Multiple sequence alignment - TraesCS6D01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G197300 chr6D 100.000 3305 0 0 1 3305 274342600 274339296 0.000000e+00 6104.0
1 TraesCS6D01G197300 chr6A 97.158 1478 32 4 852 2322 393637015 393638489 0.000000e+00 2488.0
2 TraesCS6D01G197300 chr6A 87.678 844 57 14 1 803 393636177 393637014 0.000000e+00 939.0
3 TraesCS6D01G197300 chr6B 94.333 1094 49 4 794 1874 436709963 436708870 0.000000e+00 1664.0
4 TraesCS6D01G197300 chr6B 94.190 327 19 0 1979 2305 436672253 436671927 1.770000e-137 499.0
5 TraesCS6D01G197300 chr6B 93.114 334 18 2 413 745 436710298 436709969 4.960000e-133 484.0
6 TraesCS6D01G197300 chr6B 82.824 262 43 2 93 353 436725955 436725695 1.980000e-57 233.0
7 TraesCS6D01G197300 chr6B 98.319 119 2 0 1865 1983 436708472 436708354 3.340000e-50 209.0
8 TraesCS6D01G197300 chr3D 93.763 994 54 5 2317 3305 381867079 381866089 0.000000e+00 1485.0
9 TraesCS6D01G197300 chr3D 93.461 994 58 4 2317 3305 53554590 53553599 0.000000e+00 1469.0
10 TraesCS6D01G197300 chr3D 83.854 192 23 4 15 198 397365758 397365949 3.390000e-40 176.0
11 TraesCS6D01G197300 chr5D 93.662 994 56 4 2317 3305 222075698 222074707 0.000000e+00 1480.0
12 TraesCS6D01G197300 chr5D 93.448 992 58 4 2319 3305 233082739 233083728 0.000000e+00 1465.0
13 TraesCS6D01G197300 chr7D 93.360 994 59 4 2317 3305 496319498 496320489 0.000000e+00 1463.0
14 TraesCS6D01G197300 chr7D 93.253 993 59 5 2317 3304 507442501 507443490 0.000000e+00 1456.0
15 TraesCS6D01G197300 chr4D 93.360 994 58 5 2317 3305 488524707 488523717 0.000000e+00 1463.0
16 TraesCS6D01G197300 chr4D 93.159 994 61 4 2317 3305 338325149 338326140 0.000000e+00 1452.0
17 TraesCS6D01G197300 chr2D 93.173 996 58 6 2317 3305 95263812 95264804 0.000000e+00 1454.0
18 TraesCS6D01G197300 chr2D 78.660 403 75 8 1021 1422 441872225 441871833 1.180000e-64 257.0
19 TraesCS6D01G197300 chr2D 78.509 228 34 10 51 263 376206661 376206888 5.750000e-28 135.0
20 TraesCS6D01G197300 chr2D 83.562 146 19 5 1424 1567 441871703 441871561 7.440000e-27 132.0
21 TraesCS6D01G197300 chr2A 79.167 408 64 15 1021 1422 585741992 585741600 2.530000e-66 263.0
22 TraesCS6D01G197300 chr2A 75.443 395 71 17 1030 1422 272968258 272967888 5.670000e-38 169.0
23 TraesCS6D01G197300 chr2A 84.247 146 18 5 1424 1567 585741515 585741373 1.600000e-28 137.0
24 TraesCS6D01G197300 chr2B 78.571 406 67 16 1021 1422 521518111 521517722 1.970000e-62 250.0
25 TraesCS6D01G197300 chr2B 82.877 146 20 5 1424 1567 521517594 521517452 3.460000e-25 126.0
26 TraesCS6D01G197300 chr1A 84.646 254 29 4 16 260 58194125 58194377 9.160000e-61 244.0
27 TraesCS6D01G197300 chr1A 80.392 255 29 9 22 257 520942749 520942497 1.220000e-39 174.0
28 TraesCS6D01G197300 chr1D 78.832 274 37 12 9 264 425302753 425302483 7.340000e-37 165.0
29 TraesCS6D01G197300 chr3A 88.732 71 7 1 56 125 552475999 552476069 5.880000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G197300 chr6D 274339296 274342600 3304 True 6104.000000 6104 100.000000 1 3305 1 chr6D.!!$R1 3304
1 TraesCS6D01G197300 chr6A 393636177 393638489 2312 False 1713.500000 2488 92.418000 1 2322 2 chr6A.!!$F1 2321
2 TraesCS6D01G197300 chr6B 436708354 436710298 1944 True 785.666667 1664 95.255333 413 1983 3 chr6B.!!$R3 1570
3 TraesCS6D01G197300 chr3D 381866089 381867079 990 True 1485.000000 1485 93.763000 2317 3305 1 chr3D.!!$R2 988
4 TraesCS6D01G197300 chr3D 53553599 53554590 991 True 1469.000000 1469 93.461000 2317 3305 1 chr3D.!!$R1 988
5 TraesCS6D01G197300 chr5D 222074707 222075698 991 True 1480.000000 1480 93.662000 2317 3305 1 chr5D.!!$R1 988
6 TraesCS6D01G197300 chr5D 233082739 233083728 989 False 1465.000000 1465 93.448000 2319 3305 1 chr5D.!!$F1 986
7 TraesCS6D01G197300 chr7D 496319498 496320489 991 False 1463.000000 1463 93.360000 2317 3305 1 chr7D.!!$F1 988
8 TraesCS6D01G197300 chr7D 507442501 507443490 989 False 1456.000000 1456 93.253000 2317 3304 1 chr7D.!!$F2 987
9 TraesCS6D01G197300 chr4D 488523717 488524707 990 True 1463.000000 1463 93.360000 2317 3305 1 chr4D.!!$R1 988
10 TraesCS6D01G197300 chr4D 338325149 338326140 991 False 1452.000000 1452 93.159000 2317 3305 1 chr4D.!!$F1 988
11 TraesCS6D01G197300 chr2D 95263812 95264804 992 False 1454.000000 1454 93.173000 2317 3305 1 chr2D.!!$F1 988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 199 0.028902 GACGTTTTGCTGTGGTGTCC 59.971 55.0 0.00 0.00 0.00 4.02 F
201 210 0.175073 GTGGTGTCCGGTCACTATCC 59.825 60.0 27.07 14.07 38.28 2.59 F
327 336 0.249197 CTTCCTCGCATGCTCGATCA 60.249 55.0 17.13 0.00 37.87 2.92 F
1503 1552 0.321653 GTGACCTCAAGCCGGACAAT 60.322 55.0 5.05 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1552 0.979709 CAGAGCCCTGGATGAGGACA 60.980 60.000 0.0 0.0 46.33 4.02 R
1801 1856 2.049433 CGAGTTCGACTTGGCCGT 60.049 61.111 0.0 0.0 43.02 5.68 R
2212 2674 1.512926 AACGTCTCATGCACAACCTC 58.487 50.000 0.0 0.0 0.00 3.85 R
3234 3704 1.135344 TCCGAACATCGTAATCGCACA 60.135 47.619 0.0 0.0 38.40 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.436998 GCGTGGACGGAGGAGGTG 62.437 72.222 0.71 0.00 40.23 4.00
20 21 4.083862 GTGGACGGAGGAGGTGCC 62.084 72.222 0.00 0.00 0.00 5.01
40 41 4.269523 AGCTTCCGCACTTGCCCA 62.270 61.111 0.00 0.00 39.10 5.36
49 56 1.153168 CACTTGCCCATCTACCCGG 60.153 63.158 0.00 0.00 0.00 5.73
79 86 1.218763 GTCGAGATCTCCGACGATGA 58.781 55.000 22.73 9.95 45.23 2.92
97 105 7.585573 CGACGATGAGTAGTTTTACCTATGTAC 59.414 40.741 0.00 0.00 0.00 2.90
120 128 6.488062 CGTAGTACGTAGGTTTCTATTTGC 57.512 41.667 14.62 0.00 36.74 3.68
121 129 6.029607 CGTAGTACGTAGGTTTCTATTTGCA 58.970 40.000 14.62 0.00 36.74 4.08
122 130 6.694411 CGTAGTACGTAGGTTTCTATTTGCAT 59.306 38.462 14.62 0.00 36.74 3.96
123 131 6.903883 AGTACGTAGGTTTCTATTTGCATG 57.096 37.500 0.00 0.00 0.00 4.06
124 132 5.815740 AGTACGTAGGTTTCTATTTGCATGG 59.184 40.000 0.00 0.00 0.00 3.66
126 134 3.945285 CGTAGGTTTCTATTTGCATGGGT 59.055 43.478 0.00 0.00 0.00 4.51
127 135 5.120399 CGTAGGTTTCTATTTGCATGGGTA 58.880 41.667 0.00 0.00 0.00 3.69
128 136 5.763204 CGTAGGTTTCTATTTGCATGGGTAT 59.237 40.000 0.00 0.00 0.00 2.73
129 137 6.262273 CGTAGGTTTCTATTTGCATGGGTATT 59.738 38.462 0.00 0.00 0.00 1.89
130 138 6.469782 AGGTTTCTATTTGCATGGGTATTG 57.530 37.500 0.00 0.00 0.00 1.90
135 144 6.935741 TCTATTTGCATGGGTATTGTGTAC 57.064 37.500 0.00 0.00 0.00 2.90
180 189 5.933790 TCATTATTGTGTAGGACGTTTTGC 58.066 37.500 0.00 0.00 0.00 3.68
190 199 0.028902 GACGTTTTGCTGTGGTGTCC 59.971 55.000 0.00 0.00 0.00 4.02
200 209 0.892755 TGTGGTGTCCGGTCACTATC 59.107 55.000 27.07 17.29 38.28 2.08
201 210 0.175073 GTGGTGTCCGGTCACTATCC 59.825 60.000 27.07 14.07 38.28 2.59
203 212 1.226888 GTGTCCGGTCACTATCCGC 60.227 63.158 22.40 0.00 45.71 5.54
205 214 2.124612 TCCGGTCACTATCCGCGA 60.125 61.111 8.23 0.00 45.71 5.87
206 215 2.025727 CCGGTCACTATCCGCGAC 59.974 66.667 8.23 0.00 45.71 5.19
209 218 2.408022 GTCACTATCCGCGACGCT 59.592 61.111 19.02 1.24 0.00 5.07
211 220 1.063649 TCACTATCCGCGACGCTTC 59.936 57.895 19.02 0.00 0.00 3.86
247 256 1.138671 CGGCTTTTGGGTATTGCGG 59.861 57.895 0.00 0.00 0.00 5.69
253 262 3.119280 GCTTTTGGGTATTGCGGTTGTAT 60.119 43.478 0.00 0.00 0.00 2.29
267 276 5.011227 TGCGGTTGTATATGCTCTAACCATA 59.989 40.000 10.68 0.00 40.54 2.74
274 283 0.389391 TGCTCTAACCATAGCGAGGC 59.611 55.000 0.00 0.00 41.77 4.70
280 289 4.301027 CCATAGCGAGGCGGGACC 62.301 72.222 0.00 0.00 39.61 4.46
313 322 2.721906 TCCCAAAGTTCCAATCCTTCCT 59.278 45.455 0.00 0.00 0.00 3.36
317 326 0.984230 AGTTCCAATCCTTCCTCGCA 59.016 50.000 0.00 0.00 0.00 5.10
327 336 0.249197 CTTCCTCGCATGCTCGATCA 60.249 55.000 17.13 0.00 37.87 2.92
362 373 6.039717 CCTCTCTCATCAAACACCAAAAAGAA 59.960 38.462 0.00 0.00 0.00 2.52
365 376 7.975616 TCTCTCATCAAACACCAAAAAGAAAAG 59.024 33.333 0.00 0.00 0.00 2.27
382 394 0.603065 AAGCATGAAAAGGTTCCCGC 59.397 50.000 0.00 0.00 32.28 6.13
546 559 1.490693 GCACACAGGTCACACGTGAG 61.491 60.000 25.01 15.63 40.75 3.51
554 567 2.280389 CACACGTGAGCAGGCAGT 60.280 61.111 25.01 0.00 0.00 4.40
559 572 2.746359 GTGAGCAGGCAGTCAGGT 59.254 61.111 0.00 0.00 0.00 4.00
757 799 1.269831 GCTGTCCCTGTTCGGCTATAG 60.270 57.143 0.00 0.00 33.68 1.31
763 805 4.523558 GTCCCTGTTCGGCTATAGTAGATT 59.476 45.833 0.84 0.00 0.00 2.40
844 886 2.526873 AGAGAACACGCCCCAGGT 60.527 61.111 0.00 0.00 0.00 4.00
906 948 2.735823 AGTGACGAACGTTGTAAGGTC 58.264 47.619 5.00 5.85 0.00 3.85
922 964 0.992695 GGTCCTAAACCCAAGGCTCT 59.007 55.000 0.00 0.00 42.85 4.09
923 965 1.340114 GGTCCTAAACCCAAGGCTCTG 60.340 57.143 0.00 0.00 42.85 3.35
979 1028 1.486644 GCGCTTCTCGATTCAGCTCC 61.487 60.000 0.00 0.00 41.67 4.70
1068 1117 1.229625 AGACCTCAGGGCCATGTCA 60.230 57.895 18.43 0.00 35.63 3.58
1383 1432 2.356780 CCTTAACTCCCTCCGCCGT 61.357 63.158 0.00 0.00 0.00 5.68
1467 1516 2.725312 GCTCGAGCACCTCCATGGA 61.725 63.158 31.91 15.27 41.59 3.41
1503 1552 0.321653 GTGACCTCAAGCCGGACAAT 60.322 55.000 5.05 0.00 0.00 2.71
1730 1785 1.297456 GAGTCGTCGTCGTCCTCCTT 61.297 60.000 1.33 0.00 38.33 3.36
2334 2796 3.135348 TCTGTGCCAGATTTCCTAGATGG 59.865 47.826 0.00 0.00 35.39 3.51
2337 2799 6.202439 CTGTGCCAGATTTCCTAGATGGAAG 61.202 48.000 0.00 0.00 43.75 3.46
2368 2830 8.616076 GCAACTGCTAACATAATTCTAACAGAT 58.384 33.333 0.00 0.00 38.21 2.90
2401 2865 9.632807 ATCACTATATAATTGAGAAAGTCTCGC 57.367 33.333 1.07 0.00 46.25 5.03
2420 2884 2.508526 GCCACAGTCAACTCCTTGAAT 58.491 47.619 0.00 0.00 38.17 2.57
2463 2930 4.579869 ACAAGTCGAGCTTAAATGGTGAT 58.420 39.130 0.00 0.00 35.27 3.06
2498 2965 5.864474 GCGTCTGTCTTCTTCTTAAAGATCA 59.136 40.000 0.00 0.00 41.12 2.92
2523 2990 6.463995 TTTATTCTTAATGGCTTGCCGATT 57.536 33.333 7.18 9.99 0.00 3.34
2545 3012 1.418637 TCGGGCAAGTCTACCAAAGTT 59.581 47.619 0.00 0.00 0.00 2.66
2578 3045 9.774071 TTGTTCTCATATATGGATCCTATCTCA 57.226 33.333 14.23 0.00 0.00 3.27
2579 3046 9.774071 TGTTCTCATATATGGATCCTATCTCAA 57.226 33.333 14.23 0.00 0.00 3.02
2604 3071 8.986477 AATTTCATAACTTACAGCCATTTGTC 57.014 30.769 0.00 0.00 32.56 3.18
2624 3091 3.020647 AATCCGGGCCCACCATCA 61.021 61.111 24.92 0.00 40.22 3.07
2648 3115 5.663106 ACTTCTCCATAGCTCATAGGTTCAA 59.337 40.000 0.00 0.00 0.00 2.69
2675 3142 4.582656 TGTCCAACAACATGACCTTTAAGG 59.417 41.667 9.81 9.81 42.49 2.69
2706 3173 3.431626 CCACTCAGAAGTTGTACACACCA 60.432 47.826 0.00 0.00 31.71 4.17
2761 3228 5.306114 TCTGAAGCTCCATGATCATCATT 57.694 39.130 4.86 0.00 34.28 2.57
2791 3258 3.845860 TCTCTTCAACTGAGGTAGGTGT 58.154 45.455 0.00 0.00 44.74 4.16
3026 3494 2.664698 CGCTTTGGGTTCGAGCTTTTAC 60.665 50.000 0.00 0.00 34.33 2.01
3149 3618 6.262496 GGACTTAGATGGTGCCCTATTTAAAC 59.738 42.308 0.00 0.00 0.00 2.01
3155 3624 7.582719 AGATGGTGCCCTATTTAAACTGAATA 58.417 34.615 0.00 0.00 0.00 1.75
3199 3669 3.491964 CCCAAAATGTAGCGGTAGATCGA 60.492 47.826 4.61 0.00 0.00 3.59
3234 3704 6.381133 TCATAGATCGCACCATATCCAATAGT 59.619 38.462 0.00 0.00 0.00 2.12
3266 3736 2.912690 TGTTCGGACACACCATTACA 57.087 45.000 0.00 0.00 38.90 2.41
3297 3767 1.754745 AGGTGGCGTCAACTGTGAT 59.245 52.632 6.86 0.00 39.91 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.378399 GAAGCTCCGGCACCTCCTC 62.378 68.421 0.00 0.00 41.70 3.71
70 77 4.367386 AGGTAAAACTACTCATCGTCGG 57.633 45.455 0.00 0.00 0.00 4.79
79 86 8.818057 CGTACTACGTACATAGGTAAAACTACT 58.182 37.037 0.47 0.00 38.77 2.57
109 117 6.630071 ACACAATACCCATGCAAATAGAAAC 58.370 36.000 0.00 0.00 0.00 2.78
119 127 4.261801 ACTCAAGTACACAATACCCATGC 58.738 43.478 0.00 0.00 0.00 4.06
120 128 7.768582 TCATAACTCAAGTACACAATACCCATG 59.231 37.037 0.00 0.00 0.00 3.66
121 129 7.857456 TCATAACTCAAGTACACAATACCCAT 58.143 34.615 0.00 0.00 0.00 4.00
122 130 7.247456 TCATAACTCAAGTACACAATACCCA 57.753 36.000 0.00 0.00 0.00 4.51
123 131 8.556213 TTTCATAACTCAAGTACACAATACCC 57.444 34.615 0.00 0.00 0.00 3.69
129 137 9.337396 ACTCAAATTTCATAACTCAAGTACACA 57.663 29.630 0.00 0.00 0.00 3.72
161 170 4.212425 CACAGCAAAACGTCCTACACAATA 59.788 41.667 0.00 0.00 0.00 1.90
162 171 3.003275 CACAGCAAAACGTCCTACACAAT 59.997 43.478 0.00 0.00 0.00 2.71
168 177 1.134340 ACACCACAGCAAAACGTCCTA 60.134 47.619 0.00 0.00 0.00 2.94
173 182 1.010125 CGGACACCACAGCAAAACG 60.010 57.895 0.00 0.00 0.00 3.60
180 189 0.895530 ATAGTGACCGGACACCACAG 59.104 55.000 29.30 0.00 41.12 3.66
209 218 4.323477 CCCTGAACGCCCACGGAA 62.323 66.667 0.00 0.00 46.04 4.30
218 227 1.599797 AAAAGCCGACCCCTGAACG 60.600 57.895 0.00 0.00 0.00 3.95
247 256 6.387465 TCGCTATGGTTAGAGCATATACAAC 58.613 40.000 0.87 0.00 41.16 3.32
253 262 2.231478 GCCTCGCTATGGTTAGAGCATA 59.769 50.000 0.00 0.61 41.16 3.14
280 289 1.072965 ACTTTGGGAGCAAGACCTCTG 59.927 52.381 0.00 0.00 32.43 3.35
313 322 0.744281 TAACCTGATCGAGCATGCGA 59.256 50.000 13.01 4.72 45.22 5.10
317 326 2.555199 GCAGTTAACCTGATCGAGCAT 58.445 47.619 2.72 0.00 44.49 3.79
327 336 3.445008 TGATGAGAGAGGCAGTTAACCT 58.555 45.455 0.88 0.00 41.41 3.50
341 350 6.534793 GCTTTTCTTTTTGGTGTTTGATGAGA 59.465 34.615 0.00 0.00 0.00 3.27
399 411 3.822735 GCCAAAGATAGATATGCAAGGCA 59.177 43.478 0.00 0.00 44.86 4.75
400 412 3.120060 CGCCAAAGATAGATATGCAAGGC 60.120 47.826 0.00 0.00 35.19 4.35
401 413 4.067896 ACGCCAAAGATAGATATGCAAGG 58.932 43.478 0.00 0.00 0.00 3.61
402 414 5.468072 AGAACGCCAAAGATAGATATGCAAG 59.532 40.000 0.00 0.00 0.00 4.01
520 533 2.075566 TGACCTGTGTGCCTTCCCA 61.076 57.895 0.00 0.00 0.00 4.37
547 560 3.832237 AACGCCACCTGACTGCCTG 62.832 63.158 0.00 0.00 0.00 4.85
548 561 3.560251 AACGCCACCTGACTGCCT 61.560 61.111 0.00 0.00 0.00 4.75
549 562 3.357079 CAACGCCACCTGACTGCC 61.357 66.667 0.00 0.00 0.00 4.85
554 567 2.046009 TACCTTGCAACGCCACCTGA 62.046 55.000 0.00 0.00 0.00 3.86
559 572 0.538516 ATGGTTACCTTGCAACGCCA 60.539 50.000 2.07 0.00 0.00 5.69
661 702 0.179000 GGTCCGTCTGCATCAGGATT 59.821 55.000 7.32 0.00 35.00 3.01
706 748 0.958822 GCAACAGACGTGGGGAAAAT 59.041 50.000 0.00 0.00 0.00 1.82
757 799 2.480224 TACGGCACAGCGTAATCTAC 57.520 50.000 0.00 0.00 0.00 2.59
763 805 0.388907 GAAGGTTACGGCACAGCGTA 60.389 55.000 0.00 0.00 0.00 4.42
822 864 2.266055 GGGCGTGTTCTCTCTGGG 59.734 66.667 0.00 0.00 0.00 4.45
844 886 9.983024 TTAAATTAACAAGATCATTACTGGGGA 57.017 29.630 0.00 0.00 0.00 4.81
906 948 2.437413 GAACAGAGCCTTGGGTTTAGG 58.563 52.381 0.00 0.00 35.80 2.69
917 959 3.172919 GCAGAAGCGAACAGAGCC 58.827 61.111 0.00 0.00 34.64 4.70
1464 1513 1.518056 GGTACACGACACCGAGTCCA 61.518 60.000 0.00 0.00 44.66 4.02
1503 1552 0.979709 CAGAGCCCTGGATGAGGACA 60.980 60.000 0.00 0.00 46.33 4.02
1801 1856 2.049433 CGAGTTCGACTTGGCCGT 60.049 61.111 0.00 0.00 43.02 5.68
2161 2623 2.799916 GTCGGCACTGTCGTCGTC 60.800 66.667 2.41 0.00 30.45 4.20
2212 2674 1.512926 AACGTCTCATGCACAACCTC 58.487 50.000 0.00 0.00 0.00 3.85
2314 2776 3.114606 TCCATCTAGGAAATCTGGCACA 58.885 45.455 0.00 0.00 45.65 4.57
2327 2789 2.676839 CAGTTGCTGCACTTCCATCTAG 59.323 50.000 0.00 0.00 0.00 2.43
2383 2845 4.832248 TGTGGCGAGACTTTCTCAATTAT 58.168 39.130 4.16 0.00 43.55 1.28
2384 2846 4.245660 CTGTGGCGAGACTTTCTCAATTA 58.754 43.478 4.16 0.00 43.55 1.40
2385 2847 3.070018 CTGTGGCGAGACTTTCTCAATT 58.930 45.455 4.16 0.00 43.55 2.32
2400 2864 1.967319 TTCAAGGAGTTGACTGTGGC 58.033 50.000 0.00 0.00 42.60 5.01
2401 2865 4.339247 ACAAATTCAAGGAGTTGACTGTGG 59.661 41.667 0.00 0.00 42.60 4.17
2420 2884 8.141268 ACTTGTCTCAAAGAAGTTTTCAACAAA 58.859 29.630 0.00 0.00 38.25 2.83
2463 2930 4.645136 AGAAGACAGACGCTGATGGTAATA 59.355 41.667 12.77 0.00 35.18 0.98
2498 2965 6.463995 TCGGCAAGCCATTAAGAATAAATT 57.536 33.333 12.19 0.00 35.37 1.82
2523 2990 2.835764 ACTTTGGTAGACTTGCCCGATA 59.164 45.455 0.00 0.00 0.00 2.92
2578 3045 9.423061 GACAAATGGCTGTAAGTTATGAAATTT 57.577 29.630 0.00 0.00 35.30 1.82
2579 3046 7.754924 CGACAAATGGCTGTAAGTTATGAAATT 59.245 33.333 0.00 0.00 35.30 1.82
2587 3054 3.134574 TCCGACAAATGGCTGTAAGTT 57.865 42.857 0.00 0.00 35.30 2.66
2588 3055 2.851263 TCCGACAAATGGCTGTAAGT 57.149 45.000 0.00 0.00 35.30 2.24
2592 3059 1.463674 GGATTCCGACAAATGGCTGT 58.536 50.000 0.00 0.00 0.00 4.40
2624 3091 5.211973 TGAACCTATGAGCTATGGAGAAGT 58.788 41.667 0.00 0.00 0.00 3.01
2675 3142 1.348036 ACTTCTGAGTGGTAACCCTGC 59.652 52.381 0.00 0.00 33.99 4.85
2761 3228 7.246171 ACCTCAGTTGAAGAGAAAGCTAATA 57.754 36.000 0.00 0.00 35.09 0.98
2848 3315 5.600484 GGGAGGAAGATAGAACTTGATGAGA 59.400 44.000 0.00 0.00 0.00 3.27
2916 3384 2.349532 GCAAAGTGTTTGTCGCTAGGAC 60.350 50.000 1.62 4.84 46.27 3.85
3026 3494 2.148916 TATGTCGATAGGCTTTGGCG 57.851 50.000 0.00 0.00 44.72 5.69
3155 3624 7.526041 TGGGGTTATGCATTAGAGACAATTAT 58.474 34.615 3.54 0.00 0.00 1.28
3199 3669 5.478332 TGGTGCGATCTATGATGTCTCTTAT 59.522 40.000 0.00 0.00 0.00 1.73
3234 3704 1.135344 TCCGAACATCGTAATCGCACA 60.135 47.619 0.00 0.00 38.40 4.57
3266 3736 1.610624 CGCCACCTGAAACACCATAGT 60.611 52.381 0.00 0.00 0.00 2.12
3277 3747 1.227527 CACAGTTGACGCCACCTGA 60.228 57.895 2.73 0.00 35.12 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.