Multiple sequence alignment - TraesCS6D01G196800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G196800 chr6D 100.000 2414 0 0 1 2414 273130565 273132978 0.000000e+00 4458
1 TraesCS6D01G196800 chr6D 95.297 404 19 0 1 404 185094943 185095346 2.020000e-180 641
2 TraesCS6D01G196800 chr6D 94.258 418 24 0 1 418 171792734 171793151 7.280000e-180 640
3 TraesCS6D01G196800 chr6D 93.112 421 29 0 1 421 178200295 178199875 3.410000e-173 617
4 TraesCS6D01G196800 chr2D 95.912 1908 68 8 413 2316 260387667 260385766 0.000000e+00 3083
5 TraesCS6D01G196800 chr2D 93.824 421 26 0 1 421 509588174 509587754 3.390000e-178 634
6 TraesCS6D01G196800 chr5D 95.438 1907 80 5 413 2316 249655976 249654074 0.000000e+00 3033
7 TraesCS6D01G196800 chr5D 94.326 1780 88 10 548 2316 192525642 192523865 0.000000e+00 2715
8 TraesCS6D01G196800 chr5D 93.939 99 6 0 2316 2414 428546374 428546472 1.500000e-32 150
9 TraesCS6D01G196800 chr4D 95.116 1904 82 8 413 2311 65498964 65497067 0.000000e+00 2990
10 TraesCS6D01G196800 chr4D 93.587 421 27 0 1 421 402774256 402773836 1.580000e-176 628
11 TraesCS6D01G196800 chr3D 94.803 1905 96 3 413 2315 397849800 397851703 0.000000e+00 2966
12 TraesCS6D01G196800 chr3D 94.992 1777 81 4 548 2316 349444237 349442461 0.000000e+00 2782
13 TraesCS6D01G196800 chr3D 94.062 421 25 0 1 421 403145148 403144728 7.280000e-180 640
14 TraesCS6D01G196800 chr3D 93.939 99 6 0 2316 2414 485940796 485940698 1.500000e-32 150
15 TraesCS6D01G196800 chr1D 95.819 1770 69 4 548 2315 194853924 194852158 0.000000e+00 2854
16 TraesCS6D01G196800 chr1D 93.824 421 26 0 1 421 308647894 308647474 3.390000e-178 634
17 TraesCS6D01G196800 chr1D 93.349 421 28 0 1 421 225909122 225908702 7.330000e-175 623
18 TraesCS6D01G196800 chr1D 92.929 99 7 0 2316 2414 268491010 268491108 6.960000e-31 145
19 TraesCS6D01G196800 chr5A 93.174 1919 110 10 413 2317 307496529 307498440 0.000000e+00 2798
20 TraesCS6D01G196800 chr5A 93.385 257 12 3 413 669 596227045 596227296 2.270000e-100 375
21 TraesCS6D01G196800 chr5A 92.929 99 7 0 2316 2414 497429560 497429462 6.960000e-31 145
22 TraesCS6D01G196800 chr5A 92.929 99 7 0 2316 2414 500277935 500277837 6.960000e-31 145
23 TraesCS6D01G196800 chr7D 94.633 1770 89 5 548 2316 536112800 536111036 0.000000e+00 2737
24 TraesCS6D01G196800 chr7D 94.019 418 25 0 1 418 384670758 384670341 3.390000e-178 634
25 TraesCS6D01G196800 chr7D 94.118 221 12 1 415 634 230724137 230724357 3.850000e-88 335
26 TraesCS6D01G196800 chr6B 93.694 222 13 1 413 634 569800451 569800671 4.970000e-87 331
27 TraesCS6D01G196800 chr6B 92.929 99 7 0 2316 2414 687834254 687834156 6.960000e-31 145
28 TraesCS6D01G196800 chr2B 90.272 257 18 5 413 667 415114734 415114985 1.790000e-86 329
29 TraesCS6D01G196800 chr6A 93.939 99 6 0 2316 2414 455930593 455930495 1.500000e-32 150
30 TraesCS6D01G196800 chr4A 93.939 99 6 0 2316 2414 612420735 612420637 1.500000e-32 150
31 TraesCS6D01G196800 chr1A 93.939 99 6 0 2316 2414 24832116 24832018 1.500000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G196800 chr6D 273130565 273132978 2413 False 4458 4458 100.000 1 2414 1 chr6D.!!$F3 2413
1 TraesCS6D01G196800 chr2D 260385766 260387667 1901 True 3083 3083 95.912 413 2316 1 chr2D.!!$R1 1903
2 TraesCS6D01G196800 chr5D 249654074 249655976 1902 True 3033 3033 95.438 413 2316 1 chr5D.!!$R2 1903
3 TraesCS6D01G196800 chr5D 192523865 192525642 1777 True 2715 2715 94.326 548 2316 1 chr5D.!!$R1 1768
4 TraesCS6D01G196800 chr4D 65497067 65498964 1897 True 2990 2990 95.116 413 2311 1 chr4D.!!$R1 1898
5 TraesCS6D01G196800 chr3D 397849800 397851703 1903 False 2966 2966 94.803 413 2315 1 chr3D.!!$F1 1902
6 TraesCS6D01G196800 chr3D 349442461 349444237 1776 True 2782 2782 94.992 548 2316 1 chr3D.!!$R1 1768
7 TraesCS6D01G196800 chr1D 194852158 194853924 1766 True 2854 2854 95.819 548 2315 1 chr1D.!!$R1 1767
8 TraesCS6D01G196800 chr5A 307496529 307498440 1911 False 2798 2798 93.174 413 2317 1 chr5A.!!$F1 1904
9 TraesCS6D01G196800 chr7D 536111036 536112800 1764 True 2737 2737 94.633 548 2316 1 chr7D.!!$R2 1768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.037326 GTGATGTTGGCGAGGTCTGA 60.037 55.0 0.0 0.0 0.0 3.27 F
311 312 0.247460 TGATGTTGGCGAGGTCTGAG 59.753 55.0 0.0 0.0 0.0 3.35 F
386 387 0.321122 CCTATGCGATGGAAGGAGGC 60.321 60.0 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1259 0.741915 GAGGAGGTAGAAGGCGTCAG 59.258 60.000 2.69 0.0 0.0 3.51 R
1254 1260 1.030488 CGAGGAGGTAGAAGGCGTCA 61.030 60.000 2.69 0.0 0.0 4.35 R
1429 1435 1.077625 ACCTTCTCCACCTCGCTCT 59.922 57.895 0.00 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.338710 TAGTTGTGCGGTGGGCCC 62.339 66.667 17.59 17.59 42.61 5.80
58 59 4.468829 CCAGAAGGGCTCCTGAGA 57.531 61.111 0.00 0.00 32.13 3.27
59 60 1.904032 CCAGAAGGGCTCCTGAGAC 59.096 63.158 0.00 0.00 32.13 3.36
60 61 1.515020 CAGAAGGGCTCCTGAGACG 59.485 63.158 0.00 0.00 37.31 4.18
61 62 2.185608 GAAGGGCTCCTGAGACGC 59.814 66.667 0.00 0.00 37.31 5.19
62 63 3.708220 GAAGGGCTCCTGAGACGCG 62.708 68.421 3.53 3.53 37.31 6.01
63 64 4.742649 AGGGCTCCTGAGACGCGA 62.743 66.667 15.93 0.00 37.31 5.87
64 65 4.500116 GGGCTCCTGAGACGCGAC 62.500 72.222 15.93 6.86 37.31 5.19
65 66 4.500116 GGCTCCTGAGACGCGACC 62.500 72.222 15.93 3.72 0.00 4.79
66 67 4.500116 GCTCCTGAGACGCGACCC 62.500 72.222 15.93 0.00 0.00 4.46
67 68 2.752238 CTCCTGAGACGCGACCCT 60.752 66.667 15.93 6.63 0.00 4.34
68 69 3.057547 CTCCTGAGACGCGACCCTG 62.058 68.421 15.93 0.52 0.00 4.45
69 70 3.374402 CCTGAGACGCGACCCTGT 61.374 66.667 15.93 0.00 0.00 4.00
70 71 2.651361 CTGAGACGCGACCCTGTT 59.349 61.111 15.93 0.00 0.00 3.16
71 72 1.734477 CTGAGACGCGACCCTGTTG 60.734 63.158 15.93 0.00 0.00 3.33
72 73 2.142357 CTGAGACGCGACCCTGTTGA 62.142 60.000 15.93 0.00 0.00 3.18
73 74 1.444553 GAGACGCGACCCTGTTGAG 60.445 63.158 15.93 0.00 0.00 3.02
74 75 3.112709 GACGCGACCCTGTTGAGC 61.113 66.667 15.93 0.00 0.00 4.26
75 76 4.681978 ACGCGACCCTGTTGAGCC 62.682 66.667 15.93 0.00 0.00 4.70
77 78 4.021925 GCGACCCTGTTGAGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
78 79 2.046892 CGACCCTGTTGAGCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
79 80 2.352805 GACCCTGTTGAGCCCTGG 59.647 66.667 0.00 0.00 0.00 4.45
80 81 3.260100 ACCCTGTTGAGCCCTGGG 61.260 66.667 8.86 8.86 44.38 4.45
81 82 2.935481 CCCTGTTGAGCCCTGGGA 60.935 66.667 19.27 0.00 42.15 4.37
82 83 2.352805 CCTGTTGAGCCCTGGGAC 59.647 66.667 19.27 10.20 0.00 4.46
83 84 2.046892 CTGTTGAGCCCTGGGACG 60.047 66.667 19.27 0.00 0.00 4.79
84 85 2.847234 TGTTGAGCCCTGGGACGT 60.847 61.111 19.27 0.00 0.00 4.34
85 86 2.047179 GTTGAGCCCTGGGACGTC 60.047 66.667 19.27 7.13 0.00 4.34
86 87 3.691342 TTGAGCCCTGGGACGTCG 61.691 66.667 19.27 0.00 0.00 5.12
87 88 4.671590 TGAGCCCTGGGACGTCGA 62.672 66.667 19.27 0.00 0.00 4.20
88 89 3.148279 GAGCCCTGGGACGTCGAT 61.148 66.667 19.27 0.00 0.00 3.59
89 90 3.140225 GAGCCCTGGGACGTCGATC 62.140 68.421 19.27 0.00 0.00 3.69
90 91 4.222847 GCCCTGGGACGTCGATCC 62.223 72.222 19.27 5.91 38.13 3.36
91 92 2.758327 CCCTGGGACGTCGATCCA 60.758 66.667 7.01 10.54 40.96 3.41
92 93 2.134287 CCCTGGGACGTCGATCCAT 61.134 63.158 7.01 0.00 40.96 3.41
93 94 0.826256 CCCTGGGACGTCGATCCATA 60.826 60.000 7.01 0.00 40.96 2.74
94 95 0.314302 CCTGGGACGTCGATCCATAC 59.686 60.000 9.92 0.00 40.96 2.39
95 96 0.040336 CTGGGACGTCGATCCATACG 60.040 60.000 9.92 8.01 40.96 3.06
96 97 1.371389 GGGACGTCGATCCATACGC 60.371 63.158 9.92 0.00 42.74 4.42
97 98 1.724929 GGACGTCGATCCATACGCG 60.725 63.158 9.92 3.53 42.74 6.01
98 99 1.010350 GACGTCGATCCATACGCGT 60.010 57.895 19.17 19.17 42.74 6.01
99 100 0.233074 GACGTCGATCCATACGCGTA 59.767 55.000 22.94 22.94 42.74 4.42
100 101 0.234106 ACGTCGATCCATACGCGTAG 59.766 55.000 24.78 15.51 42.74 3.51
113 114 2.028190 CGTAGCCCAGCATCCTCG 59.972 66.667 0.00 0.00 0.00 4.63
114 115 2.280457 GTAGCCCAGCATCCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
115 116 3.550431 TAGCCCAGCATCCTCGCC 61.550 66.667 0.00 0.00 0.00 5.54
118 119 4.559063 CCCAGCATCCTCGCCTGG 62.559 72.222 0.00 0.00 32.93 4.45
119 120 3.473647 CCAGCATCCTCGCCTGGA 61.474 66.667 0.00 0.00 40.82 3.86
120 121 2.815945 CCAGCATCCTCGCCTGGAT 61.816 63.158 0.00 0.00 46.91 3.41
124 125 2.286905 ATCCTCGCCTGGATGGGA 59.713 61.111 0.00 0.80 44.48 4.37
125 126 1.840650 ATCCTCGCCTGGATGGGAG 60.841 63.158 0.00 0.00 44.48 4.30
126 127 3.554342 CCTCGCCTGGATGGGAGG 61.554 72.222 9.36 9.36 42.62 4.30
131 132 4.559063 CCTGGATGGGAGGCTGCG 62.559 72.222 0.00 0.00 0.00 5.18
148 149 3.195698 GCCAGGTGAACGGCGATC 61.196 66.667 16.62 13.16 38.82 3.69
149 150 2.885644 CCAGGTGAACGGCGATCG 60.886 66.667 16.62 11.69 45.88 3.69
162 163 3.696426 GATCGTCGCGCATGGCTC 61.696 66.667 8.75 0.00 40.44 4.70
163 164 4.212913 ATCGTCGCGCATGGCTCT 62.213 61.111 8.75 0.00 40.44 4.09
164 165 4.854784 TCGTCGCGCATGGCTCTC 62.855 66.667 8.75 0.00 40.44 3.20
170 171 2.279985 CGCATGGCTCTCGCATCT 60.280 61.111 0.00 0.00 38.10 2.90
171 172 1.886313 CGCATGGCTCTCGCATCTT 60.886 57.895 0.00 0.00 38.10 2.40
172 173 1.647629 GCATGGCTCTCGCATCTTG 59.352 57.895 0.00 0.00 38.10 3.02
173 174 1.647629 CATGGCTCTCGCATCTTGC 59.352 57.895 0.00 0.00 40.69 4.01
174 175 1.093496 CATGGCTCTCGCATCTTGCA 61.093 55.000 0.00 0.00 45.36 4.08
175 176 0.814410 ATGGCTCTCGCATCTTGCAG 60.814 55.000 0.00 0.00 45.36 4.41
176 177 2.708255 GCTCTCGCATCTTGCAGC 59.292 61.111 0.00 0.00 45.36 5.25
177 178 1.814586 GCTCTCGCATCTTGCAGCT 60.815 57.895 0.00 0.00 45.36 4.24
178 179 1.764180 GCTCTCGCATCTTGCAGCTC 61.764 60.000 0.00 0.00 45.36 4.09
179 180 1.152989 CTCTCGCATCTTGCAGCTCC 61.153 60.000 0.00 0.00 45.36 4.70
180 181 1.153409 CTCGCATCTTGCAGCTCCT 60.153 57.895 0.00 0.00 45.36 3.69
181 182 1.429927 CTCGCATCTTGCAGCTCCTG 61.430 60.000 0.00 0.00 45.36 3.86
182 183 2.470362 CGCATCTTGCAGCTCCTGG 61.470 63.158 0.00 0.00 45.36 4.45
183 184 2.119655 GCATCTTGCAGCTCCTGGG 61.120 63.158 0.00 0.00 44.26 4.45
184 185 1.302285 CATCTTGCAGCTCCTGGGT 59.698 57.895 0.00 0.00 31.21 4.51
185 186 1.030488 CATCTTGCAGCTCCTGGGTG 61.030 60.000 0.00 0.00 45.31 4.61
186 187 2.207501 ATCTTGCAGCTCCTGGGTGG 62.208 60.000 0.00 0.00 43.02 4.61
187 188 3.177884 TTGCAGCTCCTGGGTGGT 61.178 61.111 0.00 0.00 43.02 4.16
188 189 3.196207 TTGCAGCTCCTGGGTGGTC 62.196 63.158 0.00 0.00 43.02 4.02
189 190 4.416738 GCAGCTCCTGGGTGGTCC 62.417 72.222 0.00 0.00 43.02 4.46
190 191 2.608988 CAGCTCCTGGGTGGTCCT 60.609 66.667 0.00 0.00 39.52 3.85
191 192 2.608988 AGCTCCTGGGTGGTCCTG 60.609 66.667 0.00 0.00 37.07 3.86
195 196 4.243550 CCTGGGTGGTCCTGGTAA 57.756 61.111 0.00 0.00 46.21 2.85
196 197 2.709992 CCTGGGTGGTCCTGGTAAT 58.290 57.895 0.00 0.00 46.21 1.89
197 198 0.255890 CCTGGGTGGTCCTGGTAATG 59.744 60.000 0.00 0.00 46.21 1.90
198 199 1.285280 CTGGGTGGTCCTGGTAATGA 58.715 55.000 0.00 0.00 36.20 2.57
199 200 1.633432 CTGGGTGGTCCTGGTAATGAA 59.367 52.381 0.00 0.00 36.20 2.57
200 201 1.353022 TGGGTGGTCCTGGTAATGAAC 59.647 52.381 0.00 0.00 36.20 3.18
201 202 1.633945 GGGTGGTCCTGGTAATGAACT 59.366 52.381 0.00 0.00 0.00 3.01
202 203 2.355818 GGGTGGTCCTGGTAATGAACTC 60.356 54.545 0.00 0.00 0.00 3.01
203 204 2.355818 GGTGGTCCTGGTAATGAACTCC 60.356 54.545 0.00 0.00 0.00 3.85
204 205 2.572104 GTGGTCCTGGTAATGAACTCCT 59.428 50.000 0.00 0.00 0.00 3.69
205 206 2.571653 TGGTCCTGGTAATGAACTCCTG 59.428 50.000 0.00 0.00 0.00 3.86
206 207 2.838202 GGTCCTGGTAATGAACTCCTGA 59.162 50.000 0.00 0.00 0.00 3.86
207 208 3.118592 GGTCCTGGTAATGAACTCCTGAG 60.119 52.174 0.00 0.00 0.00 3.35
208 209 2.501723 TCCTGGTAATGAACTCCTGAGC 59.498 50.000 0.00 0.00 0.00 4.26
209 210 2.544685 CTGGTAATGAACTCCTGAGCG 58.455 52.381 0.00 0.00 0.00 5.03
210 211 1.291132 GGTAATGAACTCCTGAGCGC 58.709 55.000 0.00 0.00 0.00 5.92
211 212 1.134670 GGTAATGAACTCCTGAGCGCT 60.135 52.381 11.27 11.27 0.00 5.92
212 213 1.929836 GTAATGAACTCCTGAGCGCTG 59.070 52.381 18.48 1.17 0.00 5.18
213 214 0.392193 AATGAACTCCTGAGCGCTGG 60.392 55.000 18.48 11.95 34.65 4.85
214 215 2.125350 GAACTCCTGAGCGCTGGG 60.125 66.667 18.48 17.62 34.17 4.45
215 216 4.400961 AACTCCTGAGCGCTGGGC 62.401 66.667 18.48 8.86 44.05 5.36
227 228 3.764466 CTGGGCGCTCCTCGTCTT 61.764 66.667 3.94 0.00 43.48 3.01
228 229 3.997064 CTGGGCGCTCCTCGTCTTG 62.997 68.421 3.94 0.00 43.48 3.02
229 230 4.070552 GGGCGCTCCTCGTCTTGT 62.071 66.667 7.64 0.00 43.48 3.16
230 231 2.811317 GGCGCTCCTCGTCTTGTG 60.811 66.667 7.64 0.00 40.20 3.33
231 232 2.049063 GCGCTCCTCGTCTTGTGT 60.049 61.111 0.00 0.00 41.07 3.72
232 233 2.089349 GCGCTCCTCGTCTTGTGTC 61.089 63.158 0.00 0.00 41.07 3.67
233 234 1.444553 CGCTCCTCGTCTTGTGTCC 60.445 63.158 0.00 0.00 0.00 4.02
234 235 1.867919 CGCTCCTCGTCTTGTGTCCT 61.868 60.000 0.00 0.00 0.00 3.85
235 236 0.109039 GCTCCTCGTCTTGTGTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
236 237 0.528470 CTCCTCGTCTTGTGTCCTCC 59.472 60.000 0.00 0.00 0.00 4.30
237 238 0.112606 TCCTCGTCTTGTGTCCTCCT 59.887 55.000 0.00 0.00 0.00 3.69
238 239 0.244994 CCTCGTCTTGTGTCCTCCTG 59.755 60.000 0.00 0.00 0.00 3.86
239 240 1.248486 CTCGTCTTGTGTCCTCCTGA 58.752 55.000 0.00 0.00 0.00 3.86
240 241 1.201181 CTCGTCTTGTGTCCTCCTGAG 59.799 57.143 0.00 0.00 0.00 3.35
250 251 1.222936 CCTCCTGAGGGTGACATGC 59.777 63.158 5.22 0.00 44.87 4.06
251 252 1.222936 CTCCTGAGGGTGACATGCC 59.777 63.158 0.00 0.00 0.00 4.40
252 253 1.538629 TCCTGAGGGTGACATGCCA 60.539 57.895 0.00 0.00 0.00 4.92
253 254 1.377725 CCTGAGGGTGACATGCCAC 60.378 63.158 3.15 3.15 36.37 5.01
254 255 1.376086 CTGAGGGTGACATGCCACA 59.624 57.895 14.42 1.08 38.74 4.17
255 256 0.250858 CTGAGGGTGACATGCCACAA 60.251 55.000 14.42 0.00 38.74 3.33
256 257 0.184692 TGAGGGTGACATGCCACAAA 59.815 50.000 14.42 0.00 38.74 2.83
257 258 0.883833 GAGGGTGACATGCCACAAAG 59.116 55.000 14.42 0.00 38.74 2.77
258 259 1.181098 AGGGTGACATGCCACAAAGC 61.181 55.000 14.42 0.00 38.74 3.51
265 266 2.832661 TGCCACAAAGCACGCCTT 60.833 55.556 0.00 0.00 38.00 4.35
266 267 2.050077 GCCACAAAGCACGCCTTC 60.050 61.111 0.00 0.00 31.99 3.46
267 268 2.844451 GCCACAAAGCACGCCTTCA 61.844 57.895 0.00 0.00 31.99 3.02
268 269 1.283793 CCACAAAGCACGCCTTCAG 59.716 57.895 0.00 0.00 31.99 3.02
269 270 1.165907 CCACAAAGCACGCCTTCAGA 61.166 55.000 0.00 0.00 31.99 3.27
270 271 0.877071 CACAAAGCACGCCTTCAGAT 59.123 50.000 0.00 0.00 31.99 2.90
271 272 0.877071 ACAAAGCACGCCTTCAGATG 59.123 50.000 0.00 0.00 31.99 2.90
272 273 0.169672 CAAAGCACGCCTTCAGATGG 59.830 55.000 0.00 0.00 31.99 3.51
273 274 0.250901 AAAGCACGCCTTCAGATGGT 60.251 50.000 4.31 0.00 31.99 3.55
274 275 0.957395 AAGCACGCCTTCAGATGGTG 60.957 55.000 13.23 13.23 40.62 4.17
275 276 3.044059 GCACGCCTTCAGATGGTGC 62.044 63.158 14.48 8.58 45.82 5.01
276 277 2.045926 ACGCCTTCAGATGGTGCC 60.046 61.111 14.48 0.00 38.55 5.01
277 278 2.825836 CGCCTTCAGATGGTGCCC 60.826 66.667 3.05 0.00 0.00 5.36
278 279 2.825836 GCCTTCAGATGGTGCCCG 60.826 66.667 4.31 0.00 0.00 6.13
279 280 2.989639 CCTTCAGATGGTGCCCGA 59.010 61.111 0.00 0.00 0.00 5.14
280 281 1.153289 CCTTCAGATGGTGCCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
281 282 1.599047 CTTCAGATGGTGCCCGAGT 59.401 57.895 0.00 0.00 0.00 4.18
282 283 0.742281 CTTCAGATGGTGCCCGAGTG 60.742 60.000 0.00 0.00 0.00 3.51
283 284 2.803155 TTCAGATGGTGCCCGAGTGC 62.803 60.000 0.00 0.00 0.00 4.40
284 285 4.101448 AGATGGTGCCCGAGTGCC 62.101 66.667 0.00 0.00 0.00 5.01
285 286 4.101448 GATGGTGCCCGAGTGCCT 62.101 66.667 0.00 0.00 0.00 4.75
286 287 4.101448 ATGGTGCCCGAGTGCCTC 62.101 66.667 0.00 0.00 0.00 4.70
294 295 3.062466 CGAGTGCCTCCCTCGTGA 61.062 66.667 1.87 0.00 45.09 4.35
295 296 2.418910 CGAGTGCCTCCCTCGTGAT 61.419 63.158 1.87 0.00 45.09 3.06
296 297 1.142748 GAGTGCCTCCCTCGTGATG 59.857 63.158 0.00 0.00 0.00 3.07
297 298 1.608717 GAGTGCCTCCCTCGTGATGT 61.609 60.000 0.00 0.00 0.00 3.06
298 299 1.194781 AGTGCCTCCCTCGTGATGTT 61.195 55.000 0.00 0.00 0.00 2.71
299 300 1.021390 GTGCCTCCCTCGTGATGTTG 61.021 60.000 0.00 0.00 0.00 3.33
300 301 1.450312 GCCTCCCTCGTGATGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
301 302 1.450312 CCTCCCTCGTGATGTTGGC 60.450 63.158 0.00 0.00 0.00 4.52
302 303 1.811266 CTCCCTCGTGATGTTGGCG 60.811 63.158 0.00 0.00 0.00 5.69
303 304 2.225791 CTCCCTCGTGATGTTGGCGA 62.226 60.000 0.00 0.00 0.00 5.54
305 306 3.786101 CTCGTGATGTTGGCGAGG 58.214 61.111 5.41 0.00 45.60 4.63
306 307 1.079819 CTCGTGATGTTGGCGAGGT 60.080 57.895 5.41 0.00 45.60 3.85
307 308 1.078759 CTCGTGATGTTGGCGAGGTC 61.079 60.000 5.41 0.00 45.60 3.85
308 309 1.079819 CGTGATGTTGGCGAGGTCT 60.080 57.895 0.00 0.00 0.00 3.85
309 310 1.354337 CGTGATGTTGGCGAGGTCTG 61.354 60.000 0.00 0.00 0.00 3.51
310 311 0.037326 GTGATGTTGGCGAGGTCTGA 60.037 55.000 0.00 0.00 0.00 3.27
311 312 0.247460 TGATGTTGGCGAGGTCTGAG 59.753 55.000 0.00 0.00 0.00 3.35
312 313 0.460987 GATGTTGGCGAGGTCTGAGG 60.461 60.000 0.00 0.00 0.00 3.86
313 314 2.435059 GTTGGCGAGGTCTGAGGC 60.435 66.667 0.00 0.00 0.00 4.70
314 315 3.706373 TTGGCGAGGTCTGAGGCC 61.706 66.667 0.00 0.00 45.76 5.19
317 318 3.844090 GCGAGGTCTGAGGCCCTC 61.844 72.222 2.98 2.98 43.20 4.30
318 319 3.151022 CGAGGTCTGAGGCCCTCC 61.151 72.222 8.62 0.00 43.65 4.30
319 320 2.039624 GAGGTCTGAGGCCCTCCA 59.960 66.667 8.62 0.00 41.22 3.86
320 321 2.040278 AGGTCTGAGGCCCTCCAG 59.960 66.667 8.62 4.95 33.74 3.86
321 322 2.039624 GGTCTGAGGCCCTCCAGA 59.960 66.667 8.62 14.05 33.74 3.86
322 323 1.613630 GGTCTGAGGCCCTCCAGAA 60.614 63.158 18.19 4.33 33.74 3.02
323 324 1.621672 GGTCTGAGGCCCTCCAGAAG 61.622 65.000 18.19 0.00 33.74 2.85
324 325 0.616111 GTCTGAGGCCCTCCAGAAGA 60.616 60.000 18.19 0.92 33.74 2.87
325 326 0.325110 TCTGAGGCCCTCCAGAAGAG 60.325 60.000 8.62 0.00 42.83 2.85
326 327 0.325110 CTGAGGCCCTCCAGAAGAGA 60.325 60.000 8.62 0.00 46.50 3.10
327 328 0.325110 TGAGGCCCTCCAGAAGAGAG 60.325 60.000 8.62 0.00 46.50 3.20
328 329 1.685355 GAGGCCCTCCAGAAGAGAGC 61.685 65.000 0.00 0.00 46.50 4.09
329 330 2.907236 GCCCTCCAGAAGAGAGCC 59.093 66.667 0.00 0.00 46.50 4.70
330 331 2.741055 GCCCTCCAGAAGAGAGCCC 61.741 68.421 0.00 0.00 46.50 5.19
331 332 2.069430 CCCTCCAGAAGAGAGCCCC 61.069 68.421 0.00 0.00 46.50 5.80
332 333 2.069430 CCTCCAGAAGAGAGCCCCC 61.069 68.421 0.00 0.00 46.50 5.40
333 334 2.364317 TCCAGAAGAGAGCCCCCG 60.364 66.667 0.00 0.00 0.00 5.73
334 335 2.364317 CCAGAAGAGAGCCCCCGA 60.364 66.667 0.00 0.00 0.00 5.14
335 336 2.430610 CCAGAAGAGAGCCCCCGAG 61.431 68.421 0.00 0.00 0.00 4.63
336 337 2.762043 AGAAGAGAGCCCCCGAGC 60.762 66.667 0.00 0.00 0.00 5.03
337 338 3.855853 GAAGAGAGCCCCCGAGCC 61.856 72.222 0.00 0.00 0.00 4.70
349 350 4.521062 CGAGCCCTGCCCGAGAAG 62.521 72.222 0.00 0.00 0.00 2.85
350 351 4.168291 GAGCCCTGCCCGAGAAGG 62.168 72.222 0.00 0.00 40.63 3.46
371 372 4.910585 CCGGGCGCGCTTTCCTAT 62.911 66.667 32.29 0.00 0.00 2.57
372 373 3.640000 CGGGCGCGCTTTCCTATG 61.640 66.667 32.29 7.44 0.00 2.23
373 374 3.953887 GGGCGCGCTTTCCTATGC 61.954 66.667 32.29 10.56 0.00 3.14
382 383 1.876156 GCTTTCCTATGCGATGGAAGG 59.124 52.381 8.48 8.48 42.46 3.46
383 384 2.485479 GCTTTCCTATGCGATGGAAGGA 60.485 50.000 14.50 2.15 42.46 3.36
384 385 3.397482 CTTTCCTATGCGATGGAAGGAG 58.603 50.000 7.45 0.23 42.46 3.69
385 386 1.342074 TCCTATGCGATGGAAGGAGG 58.658 55.000 0.00 0.00 33.18 4.30
386 387 0.321122 CCTATGCGATGGAAGGAGGC 60.321 60.000 0.00 0.00 0.00 4.70
387 388 0.668706 CTATGCGATGGAAGGAGGCG 60.669 60.000 0.00 0.00 0.00 5.52
390 391 4.918201 CGATGGAAGGAGGCGCCC 62.918 72.222 26.15 15.07 37.37 6.13
391 392 4.570874 GATGGAAGGAGGCGCCCC 62.571 72.222 26.15 23.87 37.37 5.80
690 693 3.104843 TGCAAAATGGCCACAAACTAC 57.895 42.857 8.16 0.00 0.00 2.73
842 846 5.012664 GGGGTTTGAAAATGGGTTACTTCAT 59.987 40.000 0.00 0.00 0.00 2.57
851 855 8.664669 AAAATGGGTTACTTCATATTTGACCT 57.335 30.769 0.00 0.00 0.00 3.85
919 923 2.071262 CCCTCTGCCTCTGCCATCT 61.071 63.158 0.00 0.00 36.33 2.90
946 950 0.831288 ATCTCCCATCCTCTCTGCCG 60.831 60.000 0.00 0.00 0.00 5.69
1253 1259 0.598065 GCCCACTTCACCAACACATC 59.402 55.000 0.00 0.00 0.00 3.06
1254 1260 1.819305 GCCCACTTCACCAACACATCT 60.819 52.381 0.00 0.00 0.00 2.90
1293 1299 1.755008 CCGGGTGTTTTGGTGTGGT 60.755 57.895 0.00 0.00 0.00 4.16
1447 1453 0.543174 AAGAGCGAGGTGGAGAAGGT 60.543 55.000 0.00 0.00 0.00 3.50
1511 1534 9.905713 AGTCCATGTTATGTTATGTTGTAATCT 57.094 29.630 0.00 0.00 0.00 2.40
1564 1587 4.219115 TGTTGGCCCTTTTATCAAGTTCA 58.781 39.130 0.00 0.00 0.00 3.18
1744 1768 4.022849 CCCTTCTTTTCTTACACAAGCCAG 60.023 45.833 0.00 0.00 0.00 4.85
1905 1929 1.173043 AGTGTGCGAGAAGAGAGGAG 58.827 55.000 0.00 0.00 0.00 3.69
2072 2109 3.869272 GCTTCTGTCATGGCGGCG 61.869 66.667 0.51 0.51 0.00 6.46
2073 2110 2.434884 CTTCTGTCATGGCGGCGT 60.435 61.111 9.37 0.00 0.00 5.68
2181 2218 4.038282 TCAGAGTTAACGGTCAAAGCACTA 59.962 41.667 0.00 0.00 0.00 2.74
2317 2354 4.142160 GGGCACAGATGTAAAAATCCCTTC 60.142 45.833 0.00 0.00 0.00 3.46
2318 2355 4.706962 GGCACAGATGTAAAAATCCCTTCT 59.293 41.667 0.00 0.00 0.00 2.85
2319 2356 5.163612 GGCACAGATGTAAAAATCCCTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
2320 2357 5.649831 GCACAGATGTAAAAATCCCTTCTCT 59.350 40.000 0.00 0.00 0.00 3.10
2321 2358 6.404074 GCACAGATGTAAAAATCCCTTCTCTG 60.404 42.308 0.00 0.00 35.04 3.35
2322 2359 6.881065 CACAGATGTAAAAATCCCTTCTCTGA 59.119 38.462 0.00 0.00 33.55 3.27
2323 2360 7.391554 CACAGATGTAAAAATCCCTTCTCTGAA 59.608 37.037 0.00 0.00 33.55 3.02
2324 2361 7.391833 ACAGATGTAAAAATCCCTTCTCTGAAC 59.608 37.037 0.00 0.00 33.55 3.18
2325 2362 7.609532 CAGATGTAAAAATCCCTTCTCTGAACT 59.390 37.037 0.00 0.00 31.49 3.01
2326 2363 8.826765 AGATGTAAAAATCCCTTCTCTGAACTA 58.173 33.333 0.00 0.00 0.00 2.24
2327 2364 9.103861 GATGTAAAAATCCCTTCTCTGAACTAG 57.896 37.037 0.00 0.00 0.00 2.57
2328 2365 7.974504 TGTAAAAATCCCTTCTCTGAACTAGT 58.025 34.615 0.00 0.00 0.00 2.57
2329 2366 8.437575 TGTAAAAATCCCTTCTCTGAACTAGTT 58.562 33.333 8.13 8.13 0.00 2.24
2330 2367 9.286170 GTAAAAATCCCTTCTCTGAACTAGTTT 57.714 33.333 10.02 0.00 0.00 2.66
2331 2368 7.751768 AAAATCCCTTCTCTGAACTAGTTTG 57.248 36.000 10.02 6.41 0.00 2.93
2332 2369 6.688073 AATCCCTTCTCTGAACTAGTTTGA 57.312 37.500 10.02 10.31 0.00 2.69
2333 2370 6.882768 ATCCCTTCTCTGAACTAGTTTGAT 57.117 37.500 10.02 0.00 0.00 2.57
2334 2371 6.688073 TCCCTTCTCTGAACTAGTTTGATT 57.312 37.500 10.02 0.00 0.00 2.57
2335 2372 6.702329 TCCCTTCTCTGAACTAGTTTGATTC 58.298 40.000 10.02 0.00 0.00 2.52
2336 2373 5.877564 CCCTTCTCTGAACTAGTTTGATTCC 59.122 44.000 10.02 0.00 0.00 3.01
2337 2374 5.877564 CCTTCTCTGAACTAGTTTGATTCCC 59.122 44.000 10.02 0.00 0.00 3.97
2338 2375 6.296145 CCTTCTCTGAACTAGTTTGATTCCCT 60.296 42.308 10.02 0.00 0.00 4.20
2339 2376 6.042638 TCTCTGAACTAGTTTGATTCCCTG 57.957 41.667 10.02 0.00 0.00 4.45
2340 2377 5.544176 TCTCTGAACTAGTTTGATTCCCTGT 59.456 40.000 10.02 0.00 0.00 4.00
2341 2378 6.043243 TCTCTGAACTAGTTTGATTCCCTGTT 59.957 38.462 10.02 0.00 0.00 3.16
2342 2379 5.997746 TCTGAACTAGTTTGATTCCCTGTTG 59.002 40.000 10.02 0.00 0.00 3.33
2343 2380 5.935945 TGAACTAGTTTGATTCCCTGTTGA 58.064 37.500 10.02 0.00 0.00 3.18
2344 2381 6.542821 TGAACTAGTTTGATTCCCTGTTGAT 58.457 36.000 10.02 0.00 0.00 2.57
2345 2382 6.655003 TGAACTAGTTTGATTCCCTGTTGATC 59.345 38.462 10.02 0.00 0.00 2.92
2346 2383 6.380079 ACTAGTTTGATTCCCTGTTGATCT 57.620 37.500 0.00 0.00 0.00 2.75
2347 2384 7.496346 ACTAGTTTGATTCCCTGTTGATCTA 57.504 36.000 0.00 0.00 0.00 1.98
2348 2385 7.331791 ACTAGTTTGATTCCCTGTTGATCTAC 58.668 38.462 0.00 0.00 0.00 2.59
2349 2386 6.126863 AGTTTGATTCCCTGTTGATCTACA 57.873 37.500 9.64 9.64 0.00 2.74
2350 2387 6.725364 AGTTTGATTCCCTGTTGATCTACAT 58.275 36.000 10.44 0.00 0.00 2.29
2351 2388 6.825721 AGTTTGATTCCCTGTTGATCTACATC 59.174 38.462 10.44 5.79 0.00 3.06
2352 2389 6.566079 TTGATTCCCTGTTGATCTACATCT 57.434 37.500 10.44 0.00 0.00 2.90
2353 2390 6.566079 TGATTCCCTGTTGATCTACATCTT 57.434 37.500 10.44 0.00 0.00 2.40
2354 2391 6.962182 TGATTCCCTGTTGATCTACATCTTT 58.038 36.000 10.44 0.00 0.00 2.52
2355 2392 7.405292 TGATTCCCTGTTGATCTACATCTTTT 58.595 34.615 10.44 0.00 0.00 2.27
2356 2393 8.548025 TGATTCCCTGTTGATCTACATCTTTTA 58.452 33.333 10.44 0.00 0.00 1.52
2357 2394 8.738645 ATTCCCTGTTGATCTACATCTTTTAC 57.261 34.615 10.44 0.00 0.00 2.01
2358 2395 7.496346 TCCCTGTTGATCTACATCTTTTACT 57.504 36.000 10.44 0.00 0.00 2.24
2359 2396 7.918076 TCCCTGTTGATCTACATCTTTTACTT 58.082 34.615 10.44 0.00 0.00 2.24
2360 2397 9.042450 TCCCTGTTGATCTACATCTTTTACTTA 57.958 33.333 10.44 0.00 0.00 2.24
2361 2398 9.099454 CCCTGTTGATCTACATCTTTTACTTAC 57.901 37.037 10.44 0.00 0.00 2.34
2362 2399 9.877178 CCTGTTGATCTACATCTTTTACTTACT 57.123 33.333 10.44 0.00 0.00 2.24
2370 2407 9.944376 TCTACATCTTTTACTTACTCAAATGCT 57.056 29.630 0.00 0.00 0.00 3.79
2373 2410 9.066892 ACATCTTTTACTTACTCAAATGCTTGA 57.933 29.630 0.00 0.00 39.30 3.02
2374 2411 9.334693 CATCTTTTACTTACTCAAATGCTTGAC 57.665 33.333 0.00 0.00 36.62 3.18
2375 2412 8.677148 TCTTTTACTTACTCAAATGCTTGACT 57.323 30.769 0.00 0.00 36.62 3.41
2376 2413 8.559536 TCTTTTACTTACTCAAATGCTTGACTG 58.440 33.333 0.00 0.00 36.62 3.51
2377 2414 8.445275 TTTTACTTACTCAAATGCTTGACTGA 57.555 30.769 0.00 0.00 36.62 3.41
2378 2415 8.445275 TTTACTTACTCAAATGCTTGACTGAA 57.555 30.769 0.00 0.00 36.62 3.02
2379 2416 8.621532 TTACTTACTCAAATGCTTGACTGAAT 57.378 30.769 0.00 0.00 36.62 2.57
2380 2417 7.516198 ACTTACTCAAATGCTTGACTGAATT 57.484 32.000 0.00 0.00 36.62 2.17
2381 2418 7.945134 ACTTACTCAAATGCTTGACTGAATTT 58.055 30.769 0.00 0.00 36.62 1.82
2382 2419 7.864379 ACTTACTCAAATGCTTGACTGAATTTG 59.136 33.333 0.00 0.00 41.83 2.32
2383 2420 4.986659 ACTCAAATGCTTGACTGAATTTGC 59.013 37.500 3.72 0.00 40.82 3.68
2384 2421 5.204409 TCAAATGCTTGACTGAATTTGCT 57.796 34.783 3.72 0.00 40.82 3.91
2385 2422 6.016024 ACTCAAATGCTTGACTGAATTTGCTA 60.016 34.615 3.72 0.00 40.82 3.49
2386 2423 6.151691 TCAAATGCTTGACTGAATTTGCTAC 58.848 36.000 3.72 0.00 40.82 3.58
2387 2424 5.972107 AATGCTTGACTGAATTTGCTACT 57.028 34.783 0.00 0.00 0.00 2.57
2388 2425 4.754372 TGCTTGACTGAATTTGCTACTG 57.246 40.909 0.00 0.00 0.00 2.74
2389 2426 3.058016 TGCTTGACTGAATTTGCTACTGC 60.058 43.478 0.00 0.00 40.20 4.40
2390 2427 3.190118 GCTTGACTGAATTTGCTACTGCT 59.810 43.478 0.00 0.00 40.48 4.24
2391 2428 4.720090 CTTGACTGAATTTGCTACTGCTG 58.280 43.478 0.00 0.00 40.48 4.41
2392 2429 3.743521 TGACTGAATTTGCTACTGCTGT 58.256 40.909 0.66 0.66 40.48 4.40
2393 2430 4.136796 TGACTGAATTTGCTACTGCTGTT 58.863 39.130 0.09 0.00 40.48 3.16
2394 2431 5.304778 TGACTGAATTTGCTACTGCTGTTA 58.695 37.500 0.09 0.00 40.48 2.41
2395 2432 5.179368 TGACTGAATTTGCTACTGCTGTTAC 59.821 40.000 0.09 0.00 40.48 2.50
2396 2433 5.063204 ACTGAATTTGCTACTGCTGTTACA 58.937 37.500 0.09 0.00 40.48 2.41
2397 2434 5.049405 ACTGAATTTGCTACTGCTGTTACAC 60.049 40.000 0.09 0.00 40.48 2.90
2398 2435 4.215399 TGAATTTGCTACTGCTGTTACACC 59.785 41.667 0.09 0.00 40.48 4.16
2399 2436 2.920724 TTGCTACTGCTGTTACACCA 57.079 45.000 0.09 0.00 40.48 4.17
2400 2437 2.455674 TGCTACTGCTGTTACACCAG 57.544 50.000 6.16 6.16 40.48 4.00
2401 2438 1.691976 TGCTACTGCTGTTACACCAGT 59.308 47.619 16.22 16.22 42.10 4.00
2402 2439 2.069273 GCTACTGCTGTTACACCAGTG 58.931 52.381 19.94 12.35 39.88 3.66
2403 2440 2.548067 GCTACTGCTGTTACACCAGTGT 60.548 50.000 19.94 8.71 39.88 3.55
2404 2441 2.710096 ACTGCTGTTACACCAGTGTT 57.290 45.000 11.97 0.00 41.83 3.32
2405 2442 2.288666 ACTGCTGTTACACCAGTGTTG 58.711 47.619 11.97 0.00 41.83 3.33
2406 2443 2.093181 ACTGCTGTTACACCAGTGTTGA 60.093 45.455 11.97 0.00 41.83 3.18
2407 2444 2.942376 CTGCTGTTACACCAGTGTTGAA 59.058 45.455 9.01 0.00 41.83 2.69
2408 2445 2.680841 TGCTGTTACACCAGTGTTGAAC 59.319 45.455 9.01 8.92 41.83 3.18
2409 2446 2.286184 GCTGTTACACCAGTGTTGAACG 60.286 50.000 9.01 6.45 41.83 3.95
2410 2447 3.191669 CTGTTACACCAGTGTTGAACGA 58.808 45.455 9.01 0.18 41.83 3.85
2411 2448 3.191669 TGTTACACCAGTGTTGAACGAG 58.808 45.455 9.01 0.00 41.83 4.18
2412 2449 3.119065 TGTTACACCAGTGTTGAACGAGA 60.119 43.478 9.01 0.00 41.83 4.04
2413 2450 2.910688 ACACCAGTGTTGAACGAGAT 57.089 45.000 0.00 0.00 41.83 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.338710 GGGCCCACCGCACAACTA 62.339 66.667 19.95 0.00 42.24 2.24
41 42 1.904032 GTCTCAGGAGCCCTTCTGG 59.096 63.158 3.84 0.00 37.09 3.86
42 43 1.515020 CGTCTCAGGAGCCCTTCTG 59.485 63.158 0.00 0.00 0.00 3.02
43 44 2.355193 GCGTCTCAGGAGCCCTTCT 61.355 63.158 0.00 0.00 0.00 2.85
44 45 2.185608 GCGTCTCAGGAGCCCTTC 59.814 66.667 0.00 0.00 0.00 3.46
45 46 3.764466 CGCGTCTCAGGAGCCCTT 61.764 66.667 0.00 0.00 0.00 3.95
46 47 4.742649 TCGCGTCTCAGGAGCCCT 62.743 66.667 5.77 0.00 0.00 5.19
47 48 4.500116 GTCGCGTCTCAGGAGCCC 62.500 72.222 5.77 0.00 0.00 5.19
48 49 4.500116 GGTCGCGTCTCAGGAGCC 62.500 72.222 5.77 0.00 0.00 4.70
49 50 4.500116 GGGTCGCGTCTCAGGAGC 62.500 72.222 5.77 0.00 0.00 4.70
50 51 2.752238 AGGGTCGCGTCTCAGGAG 60.752 66.667 5.77 0.00 0.00 3.69
51 52 3.062466 CAGGGTCGCGTCTCAGGA 61.062 66.667 5.77 0.00 0.00 3.86
52 53 2.932234 AACAGGGTCGCGTCTCAGG 61.932 63.158 5.77 0.00 0.00 3.86
53 54 1.734477 CAACAGGGTCGCGTCTCAG 60.734 63.158 5.77 0.00 0.00 3.35
54 55 2.142357 CTCAACAGGGTCGCGTCTCA 62.142 60.000 5.77 0.00 0.00 3.27
55 56 1.444553 CTCAACAGGGTCGCGTCTC 60.445 63.158 5.77 0.00 0.00 3.36
56 57 2.651361 CTCAACAGGGTCGCGTCT 59.349 61.111 5.77 0.00 0.00 4.18
57 58 3.112709 GCTCAACAGGGTCGCGTC 61.113 66.667 5.77 0.00 0.00 5.19
58 59 4.681978 GGCTCAACAGGGTCGCGT 62.682 66.667 5.77 0.00 0.00 6.01
60 61 4.021925 AGGGCTCAACAGGGTCGC 62.022 66.667 0.00 0.00 0.00 5.19
61 62 2.046892 CAGGGCTCAACAGGGTCG 60.047 66.667 0.00 0.00 0.00 4.79
62 63 2.352805 CCAGGGCTCAACAGGGTC 59.647 66.667 0.00 0.00 0.00 4.46
63 64 3.260100 CCCAGGGCTCAACAGGGT 61.260 66.667 0.00 0.00 34.75 4.34
64 65 2.935481 TCCCAGGGCTCAACAGGG 60.935 66.667 0.00 0.00 40.98 4.45
65 66 2.352805 GTCCCAGGGCTCAACAGG 59.647 66.667 0.00 0.00 0.00 4.00
66 67 2.046892 CGTCCCAGGGCTCAACAG 60.047 66.667 0.00 0.00 0.00 3.16
67 68 2.847234 ACGTCCCAGGGCTCAACA 60.847 61.111 0.00 0.00 0.00 3.33
68 69 2.047179 GACGTCCCAGGGCTCAAC 60.047 66.667 3.51 0.00 0.00 3.18
69 70 3.691342 CGACGTCCCAGGGCTCAA 61.691 66.667 10.58 0.00 0.00 3.02
70 71 3.957435 ATCGACGTCCCAGGGCTCA 62.957 63.158 10.58 0.00 0.00 4.26
71 72 3.140225 GATCGACGTCCCAGGGCTC 62.140 68.421 10.58 0.00 0.00 4.70
72 73 3.148279 GATCGACGTCCCAGGGCT 61.148 66.667 10.58 0.00 0.00 5.19
73 74 4.222847 GGATCGACGTCCCAGGGC 62.223 72.222 10.58 0.00 31.82 5.19
74 75 0.826256 TATGGATCGACGTCCCAGGG 60.826 60.000 15.76 0.00 37.48 4.45
75 76 0.314302 GTATGGATCGACGTCCCAGG 59.686 60.000 15.76 0.42 37.48 4.45
76 77 0.040336 CGTATGGATCGACGTCCCAG 60.040 60.000 15.76 0.77 37.48 4.45
77 78 2.027325 CGTATGGATCGACGTCCCA 58.973 57.895 13.44 13.44 37.48 4.37
78 79 1.371389 GCGTATGGATCGACGTCCC 60.371 63.158 10.58 6.16 41.13 4.46
79 80 1.724929 CGCGTATGGATCGACGTCC 60.725 63.158 10.58 8.87 41.13 4.79
80 81 0.233074 TACGCGTATGGATCGACGTC 59.767 55.000 16.41 5.18 41.13 4.34
81 82 0.234106 CTACGCGTATGGATCGACGT 59.766 55.000 20.91 0.00 41.13 4.34
82 83 1.058590 GCTACGCGTATGGATCGACG 61.059 60.000 20.91 5.70 41.97 5.12
83 84 0.728466 GGCTACGCGTATGGATCGAC 60.728 60.000 20.91 5.10 0.00 4.20
84 85 1.577922 GGCTACGCGTATGGATCGA 59.422 57.895 20.91 0.00 0.00 3.59
85 86 1.443872 GGGCTACGCGTATGGATCG 60.444 63.158 20.91 8.03 0.00 3.69
86 87 0.388649 CTGGGCTACGCGTATGGATC 60.389 60.000 20.91 8.60 0.00 3.36
87 88 1.666011 CTGGGCTACGCGTATGGAT 59.334 57.895 20.91 0.00 0.00 3.41
88 89 3.125607 CTGGGCTACGCGTATGGA 58.874 61.111 20.91 0.00 0.00 3.41
89 90 2.661866 GCTGGGCTACGCGTATGG 60.662 66.667 20.91 10.40 0.00 2.74
90 91 1.284982 GATGCTGGGCTACGCGTATG 61.285 60.000 20.91 14.56 0.00 2.39
91 92 1.006102 GATGCTGGGCTACGCGTAT 60.006 57.895 20.91 2.47 0.00 3.06
92 93 2.415843 GATGCTGGGCTACGCGTA 59.584 61.111 19.40 19.40 0.00 4.42
93 94 4.530857 GGATGCTGGGCTACGCGT 62.531 66.667 19.17 19.17 0.00 6.01
94 95 4.227134 AGGATGCTGGGCTACGCG 62.227 66.667 3.53 3.53 0.00 6.01
95 96 2.280457 GAGGATGCTGGGCTACGC 60.280 66.667 0.00 0.00 0.00 4.42
96 97 2.028190 CGAGGATGCTGGGCTACG 59.972 66.667 0.00 0.00 0.00 3.51
97 98 2.280457 GCGAGGATGCTGGGCTAC 60.280 66.667 0.00 0.00 0.00 3.58
98 99 3.550431 GGCGAGGATGCTGGGCTA 61.550 66.667 15.01 0.00 34.52 3.93
101 102 4.559063 CCAGGCGAGGATGCTGGG 62.559 72.222 0.00 0.00 32.76 4.45
102 103 2.815945 ATCCAGGCGAGGATGCTGG 61.816 63.158 12.77 2.41 46.47 4.85
103 104 2.827423 ATCCAGGCGAGGATGCTG 59.173 61.111 12.77 0.00 46.47 4.41
108 109 2.444706 CTCCCATCCAGGCGAGGA 60.445 66.667 4.21 4.21 43.01 3.71
109 110 3.554342 CCTCCCATCCAGGCGAGG 61.554 72.222 0.00 0.00 43.75 4.63
114 115 4.559063 CGCAGCCTCCCATCCAGG 62.559 72.222 0.00 0.00 37.03 4.45
132 133 2.885644 CGATCGCCGTTCACCTGG 60.886 66.667 0.26 0.00 0.00 4.45
145 146 3.696426 GAGCCATGCGCGACGATC 61.696 66.667 12.10 0.00 44.76 3.69
146 147 4.212913 AGAGCCATGCGCGACGAT 62.213 61.111 12.10 0.00 44.76 3.73
147 148 4.854784 GAGAGCCATGCGCGACGA 62.855 66.667 12.10 0.00 44.76 4.20
165 166 2.119655 CCCAGGAGCTGCAAGATGC 61.120 63.158 8.35 0.00 42.87 3.91
166 167 1.030488 CACCCAGGAGCTGCAAGATG 61.030 60.000 8.35 0.00 34.07 2.90
167 168 1.302285 CACCCAGGAGCTGCAAGAT 59.698 57.895 8.35 0.00 34.07 2.40
168 169 2.752358 CACCCAGGAGCTGCAAGA 59.248 61.111 8.35 0.00 34.07 3.02
169 170 2.360852 CCACCCAGGAGCTGCAAG 60.361 66.667 8.35 0.00 41.22 4.01
170 171 3.177884 ACCACCCAGGAGCTGCAA 61.178 61.111 8.35 0.00 41.22 4.08
171 172 3.640407 GACCACCCAGGAGCTGCA 61.640 66.667 8.35 0.00 41.22 4.41
172 173 4.416738 GGACCACCCAGGAGCTGC 62.417 72.222 0.00 0.00 41.22 5.25
173 174 2.608988 AGGACCACCCAGGAGCTG 60.609 66.667 0.00 0.00 41.22 4.24
174 175 2.608988 CAGGACCACCCAGGAGCT 60.609 66.667 0.00 0.00 41.22 4.09
175 176 3.721706 CCAGGACCACCCAGGAGC 61.722 72.222 0.00 0.00 41.22 4.70
176 177 0.546747 TTACCAGGACCACCCAGGAG 60.547 60.000 0.00 0.00 41.22 3.69
177 178 0.120377 ATTACCAGGACCACCCAGGA 59.880 55.000 0.00 0.00 41.22 3.86
178 179 0.255890 CATTACCAGGACCACCCAGG 59.744 60.000 0.00 0.00 45.67 4.45
179 180 1.285280 TCATTACCAGGACCACCCAG 58.715 55.000 0.00 0.00 37.41 4.45
180 181 1.353022 GTTCATTACCAGGACCACCCA 59.647 52.381 0.00 0.00 37.41 4.51
181 182 1.633945 AGTTCATTACCAGGACCACCC 59.366 52.381 0.00 0.00 36.73 4.61
182 183 2.355818 GGAGTTCATTACCAGGACCACC 60.356 54.545 0.00 0.00 0.00 4.61
183 184 2.572104 AGGAGTTCATTACCAGGACCAC 59.428 50.000 0.00 0.00 0.00 4.16
184 185 2.571653 CAGGAGTTCATTACCAGGACCA 59.428 50.000 0.00 0.00 0.00 4.02
185 186 2.838202 TCAGGAGTTCATTACCAGGACC 59.162 50.000 0.00 0.00 0.00 4.46
186 187 3.680196 GCTCAGGAGTTCATTACCAGGAC 60.680 52.174 0.00 0.00 0.00 3.85
187 188 2.501723 GCTCAGGAGTTCATTACCAGGA 59.498 50.000 0.00 0.00 0.00 3.86
188 189 2.739932 CGCTCAGGAGTTCATTACCAGG 60.740 54.545 0.00 0.00 0.00 4.45
189 190 2.544685 CGCTCAGGAGTTCATTACCAG 58.455 52.381 0.00 0.00 0.00 4.00
190 191 1.405526 GCGCTCAGGAGTTCATTACCA 60.406 52.381 0.00 0.00 0.00 3.25
191 192 1.134670 AGCGCTCAGGAGTTCATTACC 60.135 52.381 2.64 0.00 0.00 2.85
192 193 1.929836 CAGCGCTCAGGAGTTCATTAC 59.070 52.381 7.13 0.00 0.00 1.89
193 194 1.134699 CCAGCGCTCAGGAGTTCATTA 60.135 52.381 7.13 0.00 0.00 1.90
194 195 0.392193 CCAGCGCTCAGGAGTTCATT 60.392 55.000 7.13 0.00 0.00 2.57
195 196 1.220206 CCAGCGCTCAGGAGTTCAT 59.780 57.895 7.13 0.00 0.00 2.57
196 197 2.659016 CCAGCGCTCAGGAGTTCA 59.341 61.111 7.13 0.00 0.00 3.18
197 198 2.125350 CCCAGCGCTCAGGAGTTC 60.125 66.667 16.55 0.00 0.00 3.01
198 199 4.400961 GCCCAGCGCTCAGGAGTT 62.401 66.667 24.04 0.00 0.00 3.01
210 211 3.764466 AAGACGAGGAGCGCCCAG 61.764 66.667 15.92 11.69 46.04 4.45
211 212 4.069232 CAAGACGAGGAGCGCCCA 62.069 66.667 15.92 0.00 46.04 5.36
212 213 4.070552 ACAAGACGAGGAGCGCCC 62.071 66.667 2.29 5.07 46.04 6.13
213 214 2.811317 CACAAGACGAGGAGCGCC 60.811 66.667 2.29 0.00 46.04 6.53
214 215 2.049063 ACACAAGACGAGGAGCGC 60.049 61.111 0.00 0.00 46.04 5.92
216 217 0.109039 GAGGACACAAGACGAGGAGC 60.109 60.000 0.00 0.00 0.00 4.70
217 218 0.528470 GGAGGACACAAGACGAGGAG 59.472 60.000 0.00 0.00 0.00 3.69
218 219 0.112606 AGGAGGACACAAGACGAGGA 59.887 55.000 0.00 0.00 0.00 3.71
219 220 0.244994 CAGGAGGACACAAGACGAGG 59.755 60.000 0.00 0.00 0.00 4.63
220 221 1.201181 CTCAGGAGGACACAAGACGAG 59.799 57.143 0.00 0.00 0.00 4.18
221 222 1.248486 CTCAGGAGGACACAAGACGA 58.752 55.000 0.00 0.00 0.00 4.20
222 223 3.802613 CTCAGGAGGACACAAGACG 57.197 57.895 0.00 0.00 0.00 4.18
233 234 1.222936 GGCATGTCACCCTCAGGAG 59.777 63.158 0.00 0.00 36.73 3.69
234 235 1.538629 TGGCATGTCACCCTCAGGA 60.539 57.895 0.00 0.00 36.73 3.86
235 236 1.377725 GTGGCATGTCACCCTCAGG 60.378 63.158 19.95 0.00 40.04 3.86
236 237 0.250858 TTGTGGCATGTCACCCTCAG 60.251 55.000 26.79 0.00 36.87 3.35
237 238 0.184692 TTTGTGGCATGTCACCCTCA 59.815 50.000 26.79 6.09 36.87 3.86
238 239 0.883833 CTTTGTGGCATGTCACCCTC 59.116 55.000 26.79 3.16 36.87 4.30
239 240 1.181098 GCTTTGTGGCATGTCACCCT 61.181 55.000 26.79 0.00 36.87 4.34
240 241 1.290009 GCTTTGTGGCATGTCACCC 59.710 57.895 26.79 9.52 36.87 4.61
241 242 0.318955 GTGCTTTGTGGCATGTCACC 60.319 55.000 26.79 12.31 44.34 4.02
242 243 0.661187 CGTGCTTTGTGGCATGTCAC 60.661 55.000 23.55 23.55 44.34 3.67
243 244 1.653667 CGTGCTTTGTGGCATGTCA 59.346 52.632 0.00 0.00 44.34 3.58
244 245 4.539152 CGTGCTTTGTGGCATGTC 57.461 55.556 0.00 0.00 44.34 3.06
247 248 2.146073 GAAGGCGTGCTTTGTGGCAT 62.146 55.000 0.00 0.00 44.34 4.40
248 249 2.832661 AAGGCGTGCTTTGTGGCA 60.833 55.556 0.00 0.00 40.15 4.92
249 250 2.050077 GAAGGCGTGCTTTGTGGC 60.050 61.111 0.00 0.00 0.00 5.01
250 251 1.165907 TCTGAAGGCGTGCTTTGTGG 61.166 55.000 0.00 0.00 0.00 4.17
251 252 0.877071 ATCTGAAGGCGTGCTTTGTG 59.123 50.000 0.00 0.00 0.00 3.33
252 253 0.877071 CATCTGAAGGCGTGCTTTGT 59.123 50.000 0.00 0.00 0.00 2.83
253 254 0.169672 CCATCTGAAGGCGTGCTTTG 59.830 55.000 0.00 0.00 0.00 2.77
254 255 0.250901 ACCATCTGAAGGCGTGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
255 256 0.957395 CACCATCTGAAGGCGTGCTT 60.957 55.000 0.00 0.00 0.00 3.91
256 257 1.376424 CACCATCTGAAGGCGTGCT 60.376 57.895 0.00 0.00 0.00 4.40
257 258 3.044059 GCACCATCTGAAGGCGTGC 62.044 63.158 0.00 0.00 42.57 5.34
258 259 2.401766 GGCACCATCTGAAGGCGTG 61.402 63.158 0.00 0.00 0.00 5.34
259 260 2.045926 GGCACCATCTGAAGGCGT 60.046 61.111 0.00 0.00 0.00 5.68
280 281 1.021390 CAACATCACGAGGGAGGCAC 61.021 60.000 0.00 0.00 0.00 5.01
281 282 1.296392 CAACATCACGAGGGAGGCA 59.704 57.895 0.00 0.00 0.00 4.75
282 283 1.450312 CCAACATCACGAGGGAGGC 60.450 63.158 0.00 0.00 0.00 4.70
283 284 1.450312 GCCAACATCACGAGGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
284 285 1.811266 CGCCAACATCACGAGGGAG 60.811 63.158 0.00 0.00 0.00 4.30
285 286 2.264480 CGCCAACATCACGAGGGA 59.736 61.111 0.00 0.00 0.00 4.20
286 287 2.264480 TCGCCAACATCACGAGGG 59.736 61.111 0.00 0.00 0.00 4.30
289 290 1.080093 GACCTCGCCAACATCACGA 60.080 57.895 0.00 0.00 0.00 4.35
290 291 1.079819 AGACCTCGCCAACATCACG 60.080 57.895 0.00 0.00 0.00 4.35
291 292 0.037326 TCAGACCTCGCCAACATCAC 60.037 55.000 0.00 0.00 0.00 3.06
292 293 0.247460 CTCAGACCTCGCCAACATCA 59.753 55.000 0.00 0.00 0.00 3.07
293 294 0.460987 CCTCAGACCTCGCCAACATC 60.461 60.000 0.00 0.00 0.00 3.06
294 295 1.599047 CCTCAGACCTCGCCAACAT 59.401 57.895 0.00 0.00 0.00 2.71
295 296 3.059982 CCTCAGACCTCGCCAACA 58.940 61.111 0.00 0.00 0.00 3.33
296 297 2.435059 GCCTCAGACCTCGCCAAC 60.435 66.667 0.00 0.00 0.00 3.77
297 298 3.706373 GGCCTCAGACCTCGCCAA 61.706 66.667 0.00 0.00 41.25 4.52
300 301 3.844090 GAGGGCCTCAGACCTCGC 61.844 72.222 28.55 0.00 43.37 5.03
303 304 2.040278 CTGGAGGGCCTCAGACCT 59.960 66.667 33.27 0.00 40.54 3.85
304 305 1.613630 TTCTGGAGGGCCTCAGACC 60.614 63.158 33.27 18.40 34.31 3.85
305 306 0.616111 TCTTCTGGAGGGCCTCAGAC 60.616 60.000 33.27 17.66 34.31 3.51
306 307 0.325110 CTCTTCTGGAGGGCCTCAGA 60.325 60.000 33.27 27.56 38.35 3.27
307 308 0.325110 TCTCTTCTGGAGGGCCTCAG 60.325 60.000 33.27 25.98 42.10 3.35
308 309 0.325110 CTCTCTTCTGGAGGGCCTCA 60.325 60.000 33.27 18.74 42.10 3.86
309 310 2.515288 CTCTCTTCTGGAGGGCCTC 58.485 63.158 25.80 25.80 42.10 4.70
310 311 4.805132 CTCTCTTCTGGAGGGCCT 57.195 61.111 5.25 5.25 42.10 5.19
313 314 2.069430 GGGGCTCTCTTCTGGAGGG 61.069 68.421 0.00 0.00 45.09 4.30
314 315 2.069430 GGGGGCTCTCTTCTGGAGG 61.069 68.421 0.00 0.00 42.10 4.30
315 316 2.430610 CGGGGGCTCTCTTCTGGAG 61.431 68.421 0.00 0.00 43.12 3.86
316 317 2.364317 CGGGGGCTCTCTTCTGGA 60.364 66.667 0.00 0.00 0.00 3.86
317 318 2.364317 TCGGGGGCTCTCTTCTGG 60.364 66.667 0.00 0.00 0.00 3.86
318 319 3.087666 GCTCGGGGGCTCTCTTCTG 62.088 68.421 0.00 0.00 0.00 3.02
319 320 2.762043 GCTCGGGGGCTCTCTTCT 60.762 66.667 0.00 0.00 0.00 2.85
320 321 3.855853 GGCTCGGGGGCTCTCTTC 61.856 72.222 0.00 0.00 37.53 2.87
333 334 4.168291 CCTTCTCGGGCAGGGCTC 62.168 72.222 0.00 0.00 0.00 4.70
354 355 4.910585 ATAGGAAAGCGCGCCCGG 62.911 66.667 30.33 0.00 34.32 5.73
355 356 3.640000 CATAGGAAAGCGCGCCCG 61.640 66.667 30.33 5.65 37.57 6.13
356 357 3.953887 GCATAGGAAAGCGCGCCC 61.954 66.667 30.33 22.43 0.00 6.13
362 363 1.876156 CCTTCCATCGCATAGGAAAGC 59.124 52.381 0.00 0.00 42.91 3.51
363 364 3.397482 CTCCTTCCATCGCATAGGAAAG 58.603 50.000 0.00 0.00 42.91 2.62
364 365 2.104792 CCTCCTTCCATCGCATAGGAAA 59.895 50.000 0.00 0.00 42.91 3.13
365 366 1.694150 CCTCCTTCCATCGCATAGGAA 59.306 52.381 0.00 0.00 41.41 3.36
366 367 1.342074 CCTCCTTCCATCGCATAGGA 58.658 55.000 0.00 0.00 35.57 2.94
367 368 0.321122 GCCTCCTTCCATCGCATAGG 60.321 60.000 0.00 0.00 0.00 2.57
368 369 0.668706 CGCCTCCTTCCATCGCATAG 60.669 60.000 0.00 0.00 0.00 2.23
369 370 1.367471 CGCCTCCTTCCATCGCATA 59.633 57.895 0.00 0.00 0.00 3.14
370 371 2.109799 CGCCTCCTTCCATCGCAT 59.890 61.111 0.00 0.00 0.00 4.73
371 372 4.838152 GCGCCTCCTTCCATCGCA 62.838 66.667 0.00 0.00 44.50 5.10
373 374 4.918201 GGGCGCCTCCTTCCATCG 62.918 72.222 28.56 0.00 34.39 3.84
374 375 4.570874 GGGGCGCCTCCTTCCATC 62.571 72.222 28.56 5.59 34.39 3.51
487 488 2.370189 CCTTTTGGGCCCAATAACAACA 59.630 45.455 37.41 18.52 35.70 3.33
797 801 1.878522 GCAGCATCGGGAGTGTACG 60.879 63.158 0.00 0.00 0.00 3.67
818 822 4.345547 TGAAGTAACCCATTTTCAAACCCC 59.654 41.667 0.00 0.00 0.00 4.95
842 846 3.619483 CGTGGCAATAACGAGGTCAAATA 59.381 43.478 0.00 0.00 43.68 1.40
851 855 0.889638 TTTGGCCGTGGCAATAACGA 60.890 50.000 13.76 0.00 46.84 3.85
919 923 2.453991 AGAGGATGGGAGATGGATGAGA 59.546 50.000 0.00 0.00 0.00 3.27
946 950 1.447945 GAAGAGCAAGAAGGGCAGAC 58.552 55.000 0.00 0.00 0.00 3.51
1045 1049 0.031616 CCAGGAGGGTAGAGCCTCTT 60.032 60.000 23.37 15.74 37.43 2.85
1253 1259 0.741915 GAGGAGGTAGAAGGCGTCAG 59.258 60.000 2.69 0.00 0.00 3.51
1254 1260 1.030488 CGAGGAGGTAGAAGGCGTCA 61.030 60.000 2.69 0.00 0.00 4.35
1429 1435 1.077625 ACCTTCTCCACCTCGCTCT 59.922 57.895 0.00 0.00 0.00 4.09
1447 1453 1.551883 GGTTTAGAACCCTAGACGCCA 59.448 52.381 0.00 0.00 46.12 5.69
1501 1524 9.154847 CTCACATAGTTCAATGAGATTACAACA 57.845 33.333 0.00 0.00 40.92 3.33
1511 1534 6.231258 AGCATCTCTCACATAGTTCAATGA 57.769 37.500 0.00 0.00 0.00 2.57
1744 1768 6.159988 CACTAGCTAGGTGGCTACATATTTC 58.840 44.000 24.35 0.00 42.97 2.17
2027 2062 1.152483 ATGCACCCAACAAGCCTGT 60.152 52.632 0.00 0.00 37.39 4.00
2072 2109 2.152078 GCATTAAACGCCTGCGCAC 61.152 57.895 5.66 0.00 44.19 5.34
2073 2110 2.134968 TTGCATTAAACGCCTGCGCA 62.135 50.000 10.98 10.98 44.19 6.09
2156 2193 4.034742 GTGCTTTGACCGTTAACTCTGAAA 59.965 41.667 3.71 0.00 0.00 2.69
2157 2194 3.558418 GTGCTTTGACCGTTAACTCTGAA 59.442 43.478 3.71 0.00 0.00 3.02
2317 2354 5.799213 ACAGGGAATCAAACTAGTTCAGAG 58.201 41.667 8.95 0.01 0.00 3.35
2318 2355 5.825593 ACAGGGAATCAAACTAGTTCAGA 57.174 39.130 8.95 10.61 0.00 3.27
2319 2356 5.997746 TCAACAGGGAATCAAACTAGTTCAG 59.002 40.000 8.95 5.16 0.00 3.02
2320 2357 5.935945 TCAACAGGGAATCAAACTAGTTCA 58.064 37.500 8.95 0.00 0.00 3.18
2321 2358 6.881602 AGATCAACAGGGAATCAAACTAGTTC 59.118 38.462 8.95 0.00 0.00 3.01
2322 2359 6.784031 AGATCAACAGGGAATCAAACTAGTT 58.216 36.000 1.12 1.12 0.00 2.24
2323 2360 6.380079 AGATCAACAGGGAATCAAACTAGT 57.620 37.500 0.00 0.00 0.00 2.57
2324 2361 7.331026 TGTAGATCAACAGGGAATCAAACTAG 58.669 38.462 0.00 0.00 0.00 2.57
2325 2362 7.252612 TGTAGATCAACAGGGAATCAAACTA 57.747 36.000 0.00 0.00 0.00 2.24
2326 2363 6.126863 TGTAGATCAACAGGGAATCAAACT 57.873 37.500 0.00 0.00 0.00 2.66
2327 2364 6.825721 AGATGTAGATCAACAGGGAATCAAAC 59.174 38.462 2.30 0.00 31.70 2.93
2328 2365 6.962182 AGATGTAGATCAACAGGGAATCAAA 58.038 36.000 2.30 0.00 31.70 2.69
2329 2366 6.566079 AGATGTAGATCAACAGGGAATCAA 57.434 37.500 2.30 0.00 31.70 2.57
2330 2367 6.566079 AAGATGTAGATCAACAGGGAATCA 57.434 37.500 2.30 0.00 31.70 2.57
2331 2368 7.872113 AAAAGATGTAGATCAACAGGGAATC 57.128 36.000 2.30 0.00 31.70 2.52
2332 2369 8.552296 AGTAAAAGATGTAGATCAACAGGGAAT 58.448 33.333 2.30 0.00 31.70 3.01
2333 2370 7.918076 AGTAAAAGATGTAGATCAACAGGGAA 58.082 34.615 2.30 0.00 31.70 3.97
2334 2371 7.496346 AGTAAAAGATGTAGATCAACAGGGA 57.504 36.000 2.30 0.00 31.70 4.20
2335 2372 9.099454 GTAAGTAAAAGATGTAGATCAACAGGG 57.901 37.037 2.30 0.00 31.70 4.45
2336 2373 9.877178 AGTAAGTAAAAGATGTAGATCAACAGG 57.123 33.333 2.30 0.00 31.70 4.00
2344 2381 9.944376 AGCATTTGAGTAAGTAAAAGATGTAGA 57.056 29.630 0.00 0.00 0.00 2.59
2347 2384 9.066892 TCAAGCATTTGAGTAAGTAAAAGATGT 57.933 29.630 0.00 0.00 38.37 3.06
2348 2385 9.334693 GTCAAGCATTTGAGTAAGTAAAAGATG 57.665 33.333 0.00 0.00 43.66 2.90
2349 2386 9.289782 AGTCAAGCATTTGAGTAAGTAAAAGAT 57.710 29.630 0.00 0.00 43.48 2.40
2350 2387 8.559536 CAGTCAAGCATTTGAGTAAGTAAAAGA 58.440 33.333 0.00 0.00 43.46 2.52
2351 2388 8.559536 TCAGTCAAGCATTTGAGTAAGTAAAAG 58.440 33.333 0.00 0.00 43.46 2.27
2352 2389 8.445275 TCAGTCAAGCATTTGAGTAAGTAAAA 57.555 30.769 0.00 0.00 43.46 1.52
2353 2390 8.445275 TTCAGTCAAGCATTTGAGTAAGTAAA 57.555 30.769 0.00 0.00 43.46 2.01
2354 2391 8.621532 ATTCAGTCAAGCATTTGAGTAAGTAA 57.378 30.769 0.00 0.00 43.46 2.24
2355 2392 8.621532 AATTCAGTCAAGCATTTGAGTAAGTA 57.378 30.769 0.00 0.00 43.46 2.24
2356 2393 7.516198 AATTCAGTCAAGCATTTGAGTAAGT 57.484 32.000 0.00 0.00 43.46 2.24
2357 2394 7.148853 GCAAATTCAGTCAAGCATTTGAGTAAG 60.149 37.037 7.49 0.00 43.46 2.34
2358 2395 6.642131 GCAAATTCAGTCAAGCATTTGAGTAA 59.358 34.615 7.49 0.00 43.46 2.24
2359 2396 6.016024 AGCAAATTCAGTCAAGCATTTGAGTA 60.016 34.615 7.49 0.00 43.46 2.59
2360 2397 4.986659 GCAAATTCAGTCAAGCATTTGAGT 59.013 37.500 7.49 0.00 45.62 3.41
2361 2398 5.227908 AGCAAATTCAGTCAAGCATTTGAG 58.772 37.500 7.49 0.00 43.66 3.02
2362 2399 5.204409 AGCAAATTCAGTCAAGCATTTGA 57.796 34.783 7.49 0.00 40.92 2.69
2363 2400 6.089016 CAGTAGCAAATTCAGTCAAGCATTTG 59.911 38.462 0.00 0.00 38.91 2.32
2364 2401 6.154445 CAGTAGCAAATTCAGTCAAGCATTT 58.846 36.000 0.00 0.00 0.00 2.32
2365 2402 5.706916 CAGTAGCAAATTCAGTCAAGCATT 58.293 37.500 0.00 0.00 0.00 3.56
2366 2403 4.380233 GCAGTAGCAAATTCAGTCAAGCAT 60.380 41.667 0.00 0.00 41.58 3.79
2367 2404 3.058016 GCAGTAGCAAATTCAGTCAAGCA 60.058 43.478 0.00 0.00 41.58 3.91
2368 2405 3.190118 AGCAGTAGCAAATTCAGTCAAGC 59.810 43.478 0.00 0.00 45.49 4.01
2369 2406 4.214971 ACAGCAGTAGCAAATTCAGTCAAG 59.785 41.667 0.00 0.00 45.49 3.02
2370 2407 4.136796 ACAGCAGTAGCAAATTCAGTCAA 58.863 39.130 0.00 0.00 45.49 3.18
2371 2408 3.743521 ACAGCAGTAGCAAATTCAGTCA 58.256 40.909 0.00 0.00 45.49 3.41
2372 2409 4.756084 AACAGCAGTAGCAAATTCAGTC 57.244 40.909 0.00 0.00 45.49 3.51
2373 2410 5.049405 GTGTAACAGCAGTAGCAAATTCAGT 60.049 40.000 0.00 0.00 45.49 3.41
2374 2411 5.385617 GTGTAACAGCAGTAGCAAATTCAG 58.614 41.667 0.00 0.00 45.49 3.02
2375 2412 4.215399 GGTGTAACAGCAGTAGCAAATTCA 59.785 41.667 0.00 0.00 45.49 2.57
2376 2413 4.215399 TGGTGTAACAGCAGTAGCAAATTC 59.785 41.667 0.00 0.00 45.49 2.17
2377 2414 4.141287 TGGTGTAACAGCAGTAGCAAATT 58.859 39.130 0.00 0.00 45.49 1.82
2378 2415 3.750371 TGGTGTAACAGCAGTAGCAAAT 58.250 40.909 0.00 0.00 45.49 2.32
2379 2416 3.201353 TGGTGTAACAGCAGTAGCAAA 57.799 42.857 0.00 0.00 45.49 3.68
2380 2417 2.920724 TGGTGTAACAGCAGTAGCAA 57.079 45.000 0.00 0.00 45.49 3.91
2387 2424 2.680841 GTTCAACACTGGTGTAACAGCA 59.319 45.455 6.81 0.00 44.13 4.41
2388 2425 2.286184 CGTTCAACACTGGTGTAACAGC 60.286 50.000 15.32 0.00 44.13 4.40
2389 2426 3.191669 TCGTTCAACACTGGTGTAACAG 58.808 45.455 15.32 0.00 44.13 3.16
2390 2427 3.119065 TCTCGTTCAACACTGGTGTAACA 60.119 43.478 15.32 6.18 44.13 2.41
2391 2428 3.450578 TCTCGTTCAACACTGGTGTAAC 58.549 45.455 6.81 7.87 44.13 2.50
2392 2429 3.804786 TCTCGTTCAACACTGGTGTAA 57.195 42.857 6.81 0.00 44.13 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.