AutoCloner

Multiple sequence alignment - TraesCS6D01G196700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G196700	chr6D	100.000	4952	0	0	1	4952	273087032	273091983	0.000000e+00	9145
1	TraesCS6D01G196700	chr6A	96.858	3787	76	18	654	4422	390731038	390734799	0.000000e+00	6294
2	TraesCS6D01G196700	chr6A	96.889	450	13	1	4502	4950	390734796	390735245	0.000000e+00	752
3	TraesCS6D01G196700	chr6A	85.065	616	60	17	1	601	390729840	390730438	2.550000e-167	599
4	TraesCS6D01G196700	chr6A	92.727	110	6	2	4414	4523	553598090	553597983	1.850000e-34	158
5	TraesCS6D01G196700	chr6B	96.025	3799	74	20	668	4422	435304563	435308328	0.000000e+00	6107
6	TraesCS6D01G196700	chr6B	93.157	453	21	2	4502	4950	435308325	435308771	0.000000e+00	656
7	TraesCS6D01G196700	chr6B	85.813	289	37	3	1	286	203275779	203276066	2.240000e-78	303
8	TraesCS6D01G196700	chr6B	95.192	104	4	1	4405	4508	349967747	349967645	3.970000e-36	163
9	TraesCS6D01G196700	chr4D	81.978	627	73	28	1	600	56726405	56725792	3.440000e-136	496
10	TraesCS6D01G196700	chr2D	79.732	671	111	20	2056	2709	441527269	441527931	3.490000e-126	462
11	TraesCS6D01G196700	chr2B	79.613	672	110	19	2056	2709	519015907	519016569	1.620000e-124	457
12	TraesCS6D01G196700	chr2A	79.583	671	112	20	2056	2709	585137491	585138153	1.620000e-124	457
13	TraesCS6D01G196700	chr2A	78.859	596	88	23	21	600	707738739	707738166	7.830000e-98	368
14	TraesCS6D01G196700	chr2A	94.286	105	6	0	4415	4519	385337110	385337006	1.430000e-35	161
15	TraesCS6D01G196700	chr5A	79.445	613	100	19	4	600	244765491	244764889	1.280000e-110	411
16	TraesCS6D01G196700	chr4B	79.058	616	86	24	1	600	83308322	83307734	2.800000e-102	383
17	TraesCS6D01G196700	chr4B	93.636	110	5	2	4414	4523	373351577	373351684	3.970000e-36	163
18	TraesCS6D01G196700	chr7A	79.510	571	71	27	4	557	511509628	511509087	1.010000e-96	364
19	TraesCS6D01G196700	chr7B	76.490	621	106	29	4	600	454246764	454246160	8.060000e-78	302
20	TraesCS6D01G196700	chr3B	76.519	609	100	28	1	584	384724532	384725122	4.850000e-75	292
21	TraesCS6D01G196700	chr3A	97.000	100	2	1	4417	4516	714022260	714022162	3.070000e-37	167
22	TraesCS6D01G196700	chrUn	93.636	110	5	2	4414	4523	325927273	325927166	3.970000e-36	163
23	TraesCS6D01G196700	chr1A	93.636	110	5	2	4414	4523	272648023	272648130	3.970000e-36	163
24	TraesCS6D01G196700	chr1A	93.519	108	5	2	4411	4517	543063560	543063454	5.130000e-35	159
25	TraesCS6D01G196700	chr1D	91.892	111	7	2	4400	4510	44156375	44156267	2.390000e-33	154

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G196700	chr6D	273087032	273091983	4951	False	9145.000000	9145	100.000000	1	4952	1	chr6D.!!$F1	4951
1	TraesCS6D01G196700	chr6A	390729840	390735245	5405	False	2548.333333	6294	92.937333	1	4950	3	chr6A.!!$F1	4949
2	TraesCS6D01G196700	chr6B	435304563	435308771	4208	False	3381.500000	6107	94.591000	668	4950	2	chr6B.!!$F2	4282
3	TraesCS6D01G196700	chr4D	56725792	56726405	613	True	496.000000	496	81.978000	1	600	1	chr4D.!!$R1	599
4	TraesCS6D01G196700	chr2D	441527269	441527931	662	False	462.000000	462	79.732000	2056	2709	1	chr2D.!!$F1	653
5	TraesCS6D01G196700	chr2B	519015907	519016569	662	False	457.000000	457	79.613000	2056	2709	1	chr2B.!!$F1	653
6	TraesCS6D01G196700	chr2A	585137491	585138153	662	False	457.000000	457	79.583000	2056	2709	1	chr2A.!!$F1	653
7	TraesCS6D01G196700	chr2A	707738166	707738739	573	True	368.000000	368	78.859000	21	600	1	chr2A.!!$R2	579
8	TraesCS6D01G196700	chr5A	244764889	244765491	602	True	411.000000	411	79.445000	4	600	1	chr5A.!!$R1	596
9	TraesCS6D01G196700	chr4B	83307734	83308322	588	True	383.000000	383	79.058000	1	600	1	chr4B.!!$R1	599
10	TraesCS6D01G196700	chr7A	511509087	511509628	541	True	364.000000	364	79.510000	4	557	1	chr7A.!!$R1	553
11	TraesCS6D01G196700	chr7B	454246160	454246764	604	True	302.000000	302	76.490000	4	600	1	chr7B.!!$R1	596
12	TraesCS6D01G196700	chr3B	384724532	384725122	590	False	292.000000	292	76.519000	1	584	1	chr3B.!!$F1	583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
960	1564	0.040603	GCGCAAAGCTCCAGCATATC	60.041	55.000	0.30	0.0	45.16	1.63	F
1603	2215	0.038744	CTCCCAGATGTTGGCAACCT	59.961	55.000	26.31	17.7	46.32	3.50	F
1761	2373	0.549469	ATGGGCAGATGCTGATGACA	59.451	50.000	4.59	0.0	41.70	3.58	F
1996	2611	0.674581	TCTGCTCTTTGTGGGATGCG	60.675	55.000	0.00	0.0	0.00	4.73	F
3714	4387	1.338389	GGTTTGCTGCAGATGCCAATT	60.338	47.619	20.43	0.0	41.18	2.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2772	3404	2.032550	CCCTGCAACGATAAAGCATCAG	59.967	50.000	0.00	0.00	37.68	2.90	R
3140	3813	5.973899	TTTTGATACAAACCTAGCATGCA	57.026	34.783	21.98	5.01	0.00	3.96	R
3729	4406	0.813610	TGGAACACGTGCACTTCCAG	60.814	55.000	26.71	10.42	38.83	3.86	R
3781	4459	0.033504	GCCAGACACCAAGAAGACGA	59.966	55.000	0.00	0.00	0.00	4.20	R
4857	5536	0.394192	TCCATCAGGCAAGATAGGCG	59.606	55.000	0.00	0.00	39.37	5.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
141	145	3.589654	TTCGAGCTTGCGGTCCTGG	62.590	63.158	0.00	0.00	34.19	4.45
174	178	0.461961	CCTTCCTCTTGGCCGACTAG	59.538	60.000	0.00	0.00	0.00	2.57
390	424	4.104383	AGGAGAAATGATGGTGTGTGTT	57.896	40.909	0.00	0.00	0.00	3.32
421	458	2.368594	CCAGGGGAGGAGTAGGCA	59.631	66.667	0.00	0.00	0.00	4.75
430	467	2.697761	GGAGTAGGCAGACGTCGCA	61.698	63.158	25.67	10.27	0.00	5.10
487	524	5.583932	AGGCCTAAATTTGAGTCAGGAATT	58.416	37.500	1.29	0.00	0.00	2.17
511	551	2.539338	GCAGGCGAACAAACGGACA	61.539	57.895	0.00	0.00	0.00	4.02
609	654	4.612412	GTGTTGGACGTGGGCGGA	62.612	66.667	0.00	0.00	43.45	5.54
610	655	4.612412	TGTTGGACGTGGGCGGAC	62.612	66.667	0.00	0.00	43.45	4.79
611	656	4.612412	GTTGGACGTGGGCGGACA	62.612	66.667	0.00	0.00	43.45	4.02
612	657	3.862991	TTGGACGTGGGCGGACAA	61.863	61.111	0.00	0.00	43.45	3.18
613	658	3.402095	TTGGACGTGGGCGGACAAA	62.402	57.895	0.00	0.00	43.45	2.83
614	659	2.592287	GGACGTGGGCGGACAAAA	60.592	61.111	0.00	0.00	43.45	2.44
615	660	1.969589	GGACGTGGGCGGACAAAAT	60.970	57.895	0.00	0.00	43.45	1.82
616	661	1.520600	GGACGTGGGCGGACAAAATT	61.521	55.000	0.00	0.00	43.45	1.82
960	1564	0.040603	GCGCAAAGCTCCAGCATATC	60.041	55.000	0.30	0.00	45.16	1.63
1272	1884	4.779733	GGAGCAGGGACCGGGAGA	62.780	72.222	6.32	0.00	0.00	3.71
1325	1937	4.069232	CTGCCACCGAAGAGCCGA	62.069	66.667	0.00	0.00	0.00	5.54
1352	1964	1.541672	GAGGAGGGAGGAGAGGGAG	59.458	68.421	0.00	0.00	0.00	4.30
1603	2215	0.038744	CTCCCAGATGTTGGCAACCT	59.961	55.000	26.31	17.70	46.32	3.50
1761	2373	0.549469	ATGGGCAGATGCTGATGACA	59.451	50.000	4.59	0.00	41.70	3.58
1774	2386	4.171754	GCTGATGACAAGGAAGAAATTGC	58.828	43.478	0.00	0.00	0.00	3.56
1996	2611	0.674581	TCTGCTCTTTGTGGGATGCG	60.675	55.000	0.00	0.00	0.00	4.73
2601	3233	1.659098	CTCTTGAATAACCGCGGTGAC	59.341	52.381	34.95	22.33	0.00	3.67
2733	3365	8.336806	CAATGTTTTCAAATGTTGTGCTGTTAT	58.663	29.630	0.00	0.00	0.00	1.89
2813	3445	2.832733	GGCTCCAGAACTACTGTTAGGT	59.167	50.000	0.00	0.00	44.40	3.08
3140	3813	5.592688	ACCACTTATTGTAGCTGTGTTTTGT	59.407	36.000	0.00	0.00	0.00	2.83
3230	3903	5.625150	AGTTTCCAGCTGTATCTTTCACTT	58.375	37.500	13.81	0.00	0.00	3.16
3341	4014	2.023501	ACTAGCTGATTCTCCCCTCACT	60.024	50.000	0.00	0.00	0.00	3.41
3714	4387	1.338389	GGTTTGCTGCAGATGCCAATT	60.338	47.619	20.43	0.00	41.18	2.32
3729	4406	4.630111	TGCCAATTTTCAACATGAACCTC	58.370	39.130	0.00	0.00	35.89	3.85
3781	4459	6.493802	ACGTCCACTGGATATATGAAGTACAT	59.506	38.462	0.00	0.00	37.23	2.29
3803	4481	0.318441	TCTTCTTGGTGTCTGGCGAG	59.682	55.000	0.00	0.00	0.00	5.03
3804	4482	0.034059	CTTCTTGGTGTCTGGCGAGT	59.966	55.000	0.00	0.00	0.00	4.18
3805	4483	0.249868	TTCTTGGTGTCTGGCGAGTG	60.250	55.000	0.00	0.00	0.00	3.51
3806	4484	1.669115	CTTGGTGTCTGGCGAGTGG	60.669	63.158	0.00	0.00	0.00	4.00
3807	4485	3.825160	TTGGTGTCTGGCGAGTGGC	62.825	63.158	0.00	0.00	42.51	5.01
3809	4487	4.357947	GTGTCTGGCGAGTGGCGA	62.358	66.667	0.00	0.00	44.92	5.54
4008	4686	5.991606	GGTGTGCAAATATCTCATACAGCTA	59.008	40.000	0.00	0.00	33.68	3.32
4084	4762	8.743085	ACCGATCTTCTGTATGTAAAGTACTA	57.257	34.615	0.00	0.00	0.00	1.82
4172	4850	9.005777	AGCACATTTTATTTTGATCTTTGCATT	57.994	25.926	0.00	0.00	0.00	3.56
4280	4958	9.778741	TTGTAAGGTAATATGCTGAGGAATTAG	57.221	33.333	0.00	0.00	0.00	1.73
4319	4997	6.864165	TGTTATCGTGCTATATAAATGCGACA	59.136	34.615	0.00	0.00	0.00	4.35
4418	5096	8.379902	GGCGTTGTTTGGAAATATCTAAAATTG	58.620	33.333	0.00	0.00	37.71	2.32
4419	5097	8.921670	GCGTTGTTTGGAAATATCTAAAATTGT	58.078	29.630	0.00	0.00	37.71	2.71
4427	5105	9.847224	TGGAAATATCTAAAATTGTACTCCCTC	57.153	33.333	0.00	0.00	0.00	4.30
4434	5112	9.668497	ATCTAAAATTGTACTCCCTCTGTAAAC	57.332	33.333	0.00	0.00	0.00	2.01
4435	5113	8.877195	TCTAAAATTGTACTCCCTCTGTAAACT	58.123	33.333	0.00	0.00	0.00	2.66
4446	5124	8.862085	ACTCCCTCTGTAAACTAATATAAGAGC	58.138	37.037	0.00	0.00	0.00	4.09
4447	5125	7.883217	TCCCTCTGTAAACTAATATAAGAGCG	58.117	38.462	0.00	0.00	0.00	5.03
4448	5126	7.504911	TCCCTCTGTAAACTAATATAAGAGCGT	59.495	37.037	0.00	0.00	0.00	5.07
4449	5127	8.142551	CCCTCTGTAAACTAATATAAGAGCGTT	58.857	37.037	0.00	0.00	0.00	4.84
4450	5128	9.530633	CCTCTGTAAACTAATATAAGAGCGTTT	57.469	33.333	0.00	0.00	0.00	3.60
4498	5176	8.571461	AACGCTCTTATATTAGTTTACGAAGG	57.429	34.615	0.00	0.00	0.00	3.46
4499	5177	7.144000	ACGCTCTTATATTAGTTTACGAAGGG	58.856	38.462	0.00	0.00	0.00	3.95
4500	5178	7.013655	ACGCTCTTATATTAGTTTACGAAGGGA	59.986	37.037	0.00	0.00	0.00	4.20
4737	5416	6.925165	ACCTTCATTTCTGTTATTGTTTGCTG	59.075	34.615	0.00	0.00	0.00	4.41
4766	5445	4.861102	AACAGGAATTTGAGAGCAAAGG	57.139	40.909	0.00	0.00	46.27	3.11
4810	5489	5.561679	ACCTTTGTTCTCCCAAATCTAGAC	58.438	41.667	0.00	0.00	34.07	2.59
4950	5633	7.273659	GCTTTCATTTTGTGTTGATTACGTTC	58.726	34.615	0.00	0.00	0.00	3.95
4951	5634	7.167468	GCTTTCATTTTGTGTTGATTACGTTCT	59.833	33.333	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	122	1.021390	CAGGACCGCAAGCTCGAAAT	61.021	55.000	0.00	0.00	0.00	2.17
122	123	1.667830	CAGGACCGCAAGCTCGAAA	60.668	57.895	0.00	0.00	0.00	3.46
141	145	4.699522	AAGGGTCGAAGGCACGCC	62.700	66.667	0.00	0.00	46.31	5.68
244	255	1.600636	CTGTTGCCTCCGCCAAAGA	60.601	57.895	0.00	0.00	0.00	2.52
299	328	4.353437	GACGACGTGCCGACCCTT	62.353	66.667	4.58	0.00	0.00	3.95
368	399	4.104383	ACACACACCATCATTTCTCCTT	57.896	40.909	0.00	0.00	0.00	3.36
459	496	5.163581	CCTGACTCAAATTTAGGCCTCATTG	60.164	44.000	9.68	10.94	0.00	2.82
548	592	5.748152	CGTGTTTGTTTGGATCAAAACTGAT	59.252	36.000	23.14	0.00	40.11	2.90
601	646	0.038618	GACCAATTTTGTCCGCCCAC	60.039	55.000	0.00	0.00	0.00	4.61
602	647	1.182385	GGACCAATTTTGTCCGCCCA	61.182	55.000	7.90	0.00	0.00	5.36
603	648	1.589630	GGACCAATTTTGTCCGCCC	59.410	57.895	7.90	0.00	0.00	6.13
607	652	1.211709	CCGCGGACCAATTTTGTCC	59.788	57.895	24.07	12.16	0.00	4.02
608	653	0.168128	CTCCGCGGACCAATTTTGTC	59.832	55.000	27.28	0.00	0.00	3.18
609	654	0.536460	ACTCCGCGGACCAATTTTGT	60.536	50.000	27.28	15.58	0.00	2.83
610	655	0.596082	AACTCCGCGGACCAATTTTG	59.404	50.000	27.28	14.83	0.00	2.44
611	656	0.596082	CAACTCCGCGGACCAATTTT	59.404	50.000	27.28	7.62	0.00	1.82
612	657	1.862602	GCAACTCCGCGGACCAATTT	61.863	55.000	27.28	9.52	0.00	1.82
613	658	2.332654	GCAACTCCGCGGACCAATT	61.333	57.895	27.28	13.47	0.00	2.32
614	659	2.746277	GCAACTCCGCGGACCAAT	60.746	61.111	27.28	7.25	0.00	3.16
615	660	3.936203	AGCAACTCCGCGGACCAA	61.936	61.111	27.28	3.27	36.85	3.67
616	661	4.680237	CAGCAACTCCGCGGACCA	62.680	66.667	27.28	3.73	36.85	4.02
621	666	3.184683	GAGAGCAGCAACTCCGCG	61.185	66.667	0.00	0.00	37.39	6.46
622	667	1.809209	GAGAGAGCAGCAACTCCGC	60.809	63.158	13.65	5.57	37.39	5.54
664	1268	0.535335	GGTGAATCAGCGGTAGGACA	59.465	55.000	0.00	0.00	0.00	4.02
960	1564	2.024414	GGACTTCCGAAATTGGGGATG	58.976	52.381	8.54	8.54	34.57	3.51
1130	1742	2.163010	CGACACCTCGTAACCACTGTAT	59.837	50.000	0.00	0.00	35.00	2.29
1171	1783	2.034048	GCCCCTTCTAGAAGCCTCCG	62.034	65.000	24.58	11.89	37.11	4.63
1272	1884	3.758172	GGTGTGCCCATTTGACGT	58.242	55.556	0.00	0.00	0.00	4.34
1325	1937	3.273654	TCCCTCCTCCCTGACGGT	61.274	66.667	0.00	0.00	0.00	4.83
1352	1964	3.431725	CTTGAAACCTCGCCGGGC	61.432	66.667	9.54	9.54	36.97	6.13
1603	2215	2.159156	GCATCCAAATCAATGCTGCTCA	60.159	45.455	0.00	0.00	43.87	4.26
1761	2373	5.299279	TCTTCTTTGACGCAATTTCTTCCTT	59.701	36.000	0.00	0.00	0.00	3.36
1774	2386	3.242284	TGACACGCTTTTCTTCTTTGACG	60.242	43.478	0.00	0.00	0.00	4.35
1996	2611	3.114809	CGATGACTCTCAGAATCAGTGC	58.885	50.000	0.00	0.00	0.00	4.40
2372	2990	6.688385	CGCTTTGACTATATGGTTGTTTCATG	59.312	38.462	0.00	0.00	0.00	3.07
2601	3233	7.325694	AGAGCCCAAAATCACATATTTTCAAG	58.674	34.615	0.00	0.00	0.00	3.02
2772	3404	2.032550	CCCTGCAACGATAAAGCATCAG	59.967	50.000	0.00	0.00	37.68	2.90
3140	3813	5.973899	TTTTGATACAAACCTAGCATGCA	57.026	34.783	21.98	5.01	0.00	3.96
3341	4014	9.349713	AGACAAATATGTTCAGACAGGTAAAAA	57.650	29.630	0.00	0.00	40.74	1.94
3541	4214	7.045416	ACATTAATTGAACCATACTACGCAGA	58.955	34.615	0.00	0.00	0.00	4.26
3714	4387	4.580167	CACTTCCAGAGGTTCATGTTGAAA	59.420	41.667	0.00	0.00	38.22	2.69
3729	4406	0.813610	TGGAACACGTGCACTTCCAG	60.814	55.000	26.71	10.42	38.83	3.86
3781	4459	0.033504	GCCAGACACCAAGAAGACGA	59.966	55.000	0.00	0.00	0.00	4.20
3803	4481	3.660111	GCCACCAACTGTCGCCAC	61.660	66.667	0.00	0.00	0.00	5.01
3806	4484	2.594592	AAGGCCACCAACTGTCGC	60.595	61.111	5.01	0.00	0.00	5.19
3807	4485	0.535102	AAGAAGGCCACCAACTGTCG	60.535	55.000	5.01	0.00	0.00	4.35
3808	4486	1.692411	AAAGAAGGCCACCAACTGTC	58.308	50.000	5.01	0.00	0.00	3.51
3809	4487	2.863809	CTAAAGAAGGCCACCAACTGT	58.136	47.619	5.01	0.00	0.00	3.55
4008	4686	2.082140	TAGGCCAGACCATACGATGT	57.918	50.000	5.01	0.00	43.14	3.06
4314	4992	9.382244	GAGATACAAAAATGGTAAATATGTCGC	57.618	33.333	0.00	0.00	0.00	5.19
4334	5012	5.934625	AGAACATCCACAAACACAGAGATAC	59.065	40.000	0.00	0.00	0.00	2.24
4420	5098	8.862085	GCTCTTATATTAGTTTACAGAGGGAGT	58.138	37.037	0.00	0.00	0.00	3.85
4421	5099	8.024285	CGCTCTTATATTAGTTTACAGAGGGAG	58.976	40.741	4.76	0.00	40.49	4.30
4422	5100	7.504911	ACGCTCTTATATTAGTTTACAGAGGGA	59.495	37.037	14.96	0.00	40.49	4.20
4423	5101	7.659186	ACGCTCTTATATTAGTTTACAGAGGG	58.341	38.462	8.36	8.36	42.53	4.30
4424	5102	9.530633	AAACGCTCTTATATTAGTTTACAGAGG	57.469	33.333	0.00	0.00	31.14	3.69
4472	5150	9.028185	CCTTCGTAAACTAATATAAGAGCGTTT	57.972	33.333	0.00	0.00	0.00	3.60
4473	5151	7.650903	CCCTTCGTAAACTAATATAAGAGCGTT	59.349	37.037	0.00	0.00	0.00	4.84
4474	5152	7.013655	TCCCTTCGTAAACTAATATAAGAGCGT	59.986	37.037	0.00	0.00	0.00	5.07
4475	5153	7.365741	TCCCTTCGTAAACTAATATAAGAGCG	58.634	38.462	0.00	0.00	0.00	5.03
4476	5154	8.358895	ACTCCCTTCGTAAACTAATATAAGAGC	58.641	37.037	0.00	0.00	0.00	4.09
4483	5161	9.407380	TGTATGTACTCCCTTCGTAAACTAATA	57.593	33.333	0.00	0.00	0.00	0.98
4484	5162	8.297470	TGTATGTACTCCCTTCGTAAACTAAT	57.703	34.615	0.00	0.00	0.00	1.73
4485	5163	7.701539	TGTATGTACTCCCTTCGTAAACTAA	57.298	36.000	0.00	0.00	0.00	2.24
4486	5164	7.886629	ATGTATGTACTCCCTTCGTAAACTA	57.113	36.000	0.00	0.00	0.00	2.24
4487	5165	6.786967	ATGTATGTACTCCCTTCGTAAACT	57.213	37.500	0.00	0.00	0.00	2.66
4488	5166	9.538508	AAATATGTATGTACTCCCTTCGTAAAC	57.461	33.333	0.00	0.00	0.00	2.01
4492	5170	9.706691	CATAAAATATGTATGTACTCCCTTCGT	57.293	33.333	0.00	0.00	0.00	3.85
4493	5171	9.151471	CCATAAAATATGTATGTACTCCCTTCG	57.849	37.037	0.00	0.00	0.00	3.79
4494	5172	8.947115	GCCATAAAATATGTATGTACTCCCTTC	58.053	37.037	0.00	0.00	0.00	3.46
4495	5173	8.669571	AGCCATAAAATATGTATGTACTCCCTT	58.330	33.333	0.00	0.00	0.00	3.95
4496	5174	8.219660	AGCCATAAAATATGTATGTACTCCCT	57.780	34.615	0.00	0.00	0.00	4.20
4497	5175	8.863872	AAGCCATAAAATATGTATGTACTCCC	57.136	34.615	0.00	0.00	0.00	4.30
4648	5326	3.902261	TTAGTTGTGCTCTTACGACGA	57.098	42.857	0.00	0.00	39.45	4.20
4660	5338	7.906010	TGTGTTTTTAAGACGACATTAGTTGTG	59.094	33.333	0.00	0.00	42.47	3.33
4857	5536	0.394192	TCCATCAGGCAAGATAGGCG	59.606	55.000	0.00	0.00	39.37	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.