Multiple sequence alignment - TraesCS6D01G196400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G196400 chr6D 100.000 3503 0 0 1 3503 272645972 272649474 0.000000e+00 6469.0
1 TraesCS6D01G196400 chr6D 89.823 452 34 7 2756 3198 449666102 449665654 1.410000e-158 569.0
2 TraesCS6D01G196400 chr6A 97.191 2777 41 12 1 2758 389243744 389246502 0.000000e+00 4662.0
3 TraesCS6D01G196400 chr6A 95.031 161 7 1 3343 3503 389246500 389246659 5.800000e-63 252.0
4 TraesCS6D01G196400 chr6B 97.464 2248 29 7 524 2759 433707907 433710138 0.000000e+00 3810.0
5 TraesCS6D01G196400 chr6B 96.735 490 12 2 38 523 433707308 433707797 0.000000e+00 813.0
6 TraesCS6D01G196400 chr6B 86.905 168 7 2 3336 3503 433710138 433710290 1.290000e-39 174.0
7 TraesCS6D01G196400 chr6B 89.873 79 8 0 3425 3503 40445599 40445677 6.190000e-18 102.0
8 TraesCS6D01G196400 chr6B 88.235 85 9 1 158 242 93453116 93453033 2.220000e-17 100.0
9 TraesCS6D01G196400 chr5D 90.222 450 33 4 2757 3197 371033312 371033759 8.430000e-161 577.0
10 TraesCS6D01G196400 chr5D 88.983 472 39 7 2757 3218 435932607 435932139 3.920000e-159 571.0
11 TraesCS6D01G196400 chr3D 90.022 451 33 7 2758 3199 236666911 236667358 1.090000e-159 573.0
12 TraesCS6D01G196400 chr3D 89.556 450 35 7 2758 3198 561446225 561446671 8.490000e-156 560.0
13 TraesCS6D01G196400 chr3D 90.000 60 5 1 3290 3348 577760675 577760734 3.750000e-10 76.8
14 TraesCS6D01G196400 chr2D 90.044 452 31 9 2756 3198 113605626 113605180 1.090000e-159 573.0
15 TraesCS6D01G196400 chr2D 89.823 452 36 6 2757 3199 627064519 627064969 3.920000e-159 571.0
16 TraesCS6D01G196400 chr2D 96.703 91 3 0 3203 3293 188839673 188839583 6.060000e-33 152.0
17 TraesCS6D01G196400 chr2D 92.405 79 4 2 158 235 72781251 72781328 1.030000e-20 111.0
18 TraesCS6D01G196400 chr1D 89.579 451 36 7 2757 3199 336628459 336628012 2.360000e-156 562.0
19 TraesCS6D01G196400 chr1D 89.381 452 38 6 2757 3199 343523005 343523455 8.490000e-156 560.0
20 TraesCS6D01G196400 chr1D 88.608 79 8 1 3425 3503 219479781 219479858 1.040000e-15 95.3
21 TraesCS6D01G196400 chr1D 89.474 76 7 1 3428 3503 225704941 225704867 1.040000e-15 95.3
22 TraesCS6D01G196400 chr7A 91.250 80 7 0 156 235 168872247 168872326 3.700000e-20 110.0
23 TraesCS6D01G196400 chr7A 94.737 38 2 0 1568 1605 704907640 704907677 3.780000e-05 60.2
24 TraesCS6D01G196400 chr3B 92.308 78 4 1 158 235 654652707 654652782 3.700000e-20 110.0
25 TraesCS6D01G196400 chr3B 89.333 75 7 1 3429 3503 580353790 580353717 3.720000e-15 93.5
26 TraesCS6D01G196400 chr7D 91.250 80 6 1 156 235 167359519 167359597 1.330000e-19 108.0
27 TraesCS6D01G196400 chr4D 90.000 80 7 1 3425 3503 10930458 10930379 6.190000e-18 102.0
28 TraesCS6D01G196400 chr4B 88.608 79 8 1 3425 3503 100321399 100321322 1.040000e-15 95.3
29 TraesCS6D01G196400 chr1B 87.059 85 10 1 158 242 179866767 179866684 1.040000e-15 95.3
30 TraesCS6D01G196400 chr1B 87.342 79 8 2 158 235 523210954 523210877 4.820000e-14 89.8
31 TraesCS6D01G196400 chrUn 87.342 79 9 1 3425 3503 9876206 9876129 4.820000e-14 89.8
32 TraesCS6D01G196400 chr5A 90.566 53 5 0 3285 3337 335967616 335967668 1.740000e-08 71.3
33 TraesCS6D01G196400 chr2A 83.544 79 4 3 3197 3275 202892391 202892322 8.120000e-07 65.8
34 TraesCS6D01G196400 chr3A 92.857 42 3 0 3297 3338 294634329 294634288 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G196400 chr6D 272645972 272649474 3502 False 6469 6469 100.000000 1 3503 1 chr6D.!!$F1 3502
1 TraesCS6D01G196400 chr6A 389243744 389246659 2915 False 2457 4662 96.111000 1 3503 2 chr6A.!!$F1 3502
2 TraesCS6D01G196400 chr6B 433707308 433710290 2982 False 1599 3810 93.701333 38 3503 3 chr6B.!!$F2 3465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 675 5.277634 GGCGTTTAGTTTTCTCACTGCTAAA 60.278 40.0 0.0 0.0 31.66 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 2652 7.49692 CAGCTGACCACTAGAAAATCAATCATA 59.503 37.037 8.42 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 236 7.833786 TCAACTACAAGTATTTCGGTACAGAT 58.166 34.615 0.00 0.00 0.00 2.90
237 238 7.166691 ACTACAAGTATTTCGGTACAGATGT 57.833 36.000 0.00 0.00 0.00 3.06
239 240 8.742777 ACTACAAGTATTTCGGTACAGATGTAA 58.257 33.333 0.00 0.00 31.52 2.41
249 250 7.997107 TCGGTACAGATGTAATACAATTCAC 57.003 36.000 0.00 0.00 31.52 3.18
559 675 5.277634 GGCGTTTAGTTTTCTCACTGCTAAA 60.278 40.000 0.00 0.00 31.66 1.85
723 839 6.734137 TGATCACTAAACCAAACACATTGAC 58.266 36.000 0.00 0.00 41.85 3.18
1141 1270 2.202810 CGAAGGAGGAGGAAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
2452 2581 4.037222 ACAAAGGAAAAACATGGAGGGTT 58.963 39.130 0.00 0.00 0.00 4.11
2573 2702 4.519540 AGCGTCATTTGGCATTACTTTT 57.480 36.364 0.00 0.00 0.00 2.27
2574 2703 4.881920 AGCGTCATTTGGCATTACTTTTT 58.118 34.783 0.00 0.00 0.00 1.94
2603 2732 7.936847 TGACATTACTTTGACAACTAATGAGGT 59.063 33.333 21.35 8.06 32.93 3.85
2765 2894 4.669206 TCGTTCTCCGAGTATCTCTACT 57.331 45.455 0.00 0.00 41.60 2.57
2795 2924 2.397751 CCGAGTTGGTGATGATGGC 58.602 57.895 0.00 0.00 0.00 4.40
2796 2925 1.431488 CCGAGTTGGTGATGATGGCG 61.431 60.000 0.00 0.00 0.00 5.69
2797 2926 0.740868 CGAGTTGGTGATGATGGCGT 60.741 55.000 0.00 0.00 0.00 5.68
2798 2927 0.729116 GAGTTGGTGATGATGGCGTG 59.271 55.000 0.00 0.00 0.00 5.34
2799 2928 0.036732 AGTTGGTGATGATGGCGTGT 59.963 50.000 0.00 0.00 0.00 4.49
2800 2929 0.447801 GTTGGTGATGATGGCGTGTC 59.552 55.000 0.00 0.00 0.00 3.67
2801 2930 0.324614 TTGGTGATGATGGCGTGTCT 59.675 50.000 0.00 0.00 0.00 3.41
2802 2931 0.391528 TGGTGATGATGGCGTGTCTG 60.392 55.000 0.00 0.00 0.00 3.51
2803 2932 1.709147 GGTGATGATGGCGTGTCTGC 61.709 60.000 0.00 0.00 0.00 4.26
2812 2941 3.137484 GCGTGTCTGCCATCTTACA 57.863 52.632 0.00 0.00 0.00 2.41
2813 2942 1.438651 GCGTGTCTGCCATCTTACAA 58.561 50.000 0.00 0.00 0.00 2.41
2814 2943 2.009774 GCGTGTCTGCCATCTTACAAT 58.990 47.619 0.00 0.00 0.00 2.71
2815 2944 3.194861 GCGTGTCTGCCATCTTACAATA 58.805 45.455 0.00 0.00 0.00 1.90
2816 2945 3.809832 GCGTGTCTGCCATCTTACAATAT 59.190 43.478 0.00 0.00 0.00 1.28
2817 2946 4.988540 GCGTGTCTGCCATCTTACAATATA 59.011 41.667 0.00 0.00 0.00 0.86
2818 2947 5.119279 GCGTGTCTGCCATCTTACAATATAG 59.881 44.000 0.00 0.00 0.00 1.31
2819 2948 6.447162 CGTGTCTGCCATCTTACAATATAGA 58.553 40.000 0.00 0.00 0.00 1.98
2820 2949 6.363626 CGTGTCTGCCATCTTACAATATAGAC 59.636 42.308 0.00 0.00 34.25 2.59
2821 2950 6.647067 GTGTCTGCCATCTTACAATATAGACC 59.353 42.308 0.00 0.00 33.07 3.85
2822 2951 5.864474 GTCTGCCATCTTACAATATAGACCG 59.136 44.000 0.00 0.00 0.00 4.79
2823 2952 5.538813 TCTGCCATCTTACAATATAGACCGT 59.461 40.000 0.00 0.00 0.00 4.83
2824 2953 5.779922 TGCCATCTTACAATATAGACCGTC 58.220 41.667 0.00 0.00 0.00 4.79
2825 2954 5.538813 TGCCATCTTACAATATAGACCGTCT 59.461 40.000 6.25 6.25 0.00 4.18
2826 2955 5.864474 GCCATCTTACAATATAGACCGTCTG 59.136 44.000 11.52 0.00 0.00 3.51
2827 2956 6.294564 GCCATCTTACAATATAGACCGTCTGA 60.295 42.308 11.52 0.00 0.00 3.27
2828 2957 7.577807 GCCATCTTACAATATAGACCGTCTGAT 60.578 40.741 11.52 1.91 0.00 2.90
2829 2958 7.971168 CCATCTTACAATATAGACCGTCTGATC 59.029 40.741 11.52 0.00 0.00 2.92
2830 2959 8.735315 CATCTTACAATATAGACCGTCTGATCT 58.265 37.037 11.52 0.00 0.00 2.75
2831 2960 9.961264 ATCTTACAATATAGACCGTCTGATCTA 57.039 33.333 11.52 0.00 32.11 1.98
2832 2961 9.961264 TCTTACAATATAGACCGTCTGATCTAT 57.039 33.333 11.52 0.00 40.47 1.98
2840 2969 6.003234 AGACCGTCTGATCTATATTTGACG 57.997 41.667 0.00 0.00 44.32 4.35
2881 3010 7.518731 TGATAATTTTGCAAAAAGATACCGC 57.481 32.000 27.10 11.97 0.00 5.68
2882 3011 7.093354 TGATAATTTTGCAAAAAGATACCGCA 58.907 30.769 27.10 13.97 0.00 5.69
2883 3012 5.590104 AATTTTGCAAAAAGATACCGCAC 57.410 34.783 27.10 0.00 31.10 5.34
2884 3013 2.715737 TTGCAAAAAGATACCGCACC 57.284 45.000 0.00 0.00 31.10 5.01
2885 3014 1.904287 TGCAAAAAGATACCGCACCT 58.096 45.000 0.00 0.00 0.00 4.00
2886 3015 1.810151 TGCAAAAAGATACCGCACCTC 59.190 47.619 0.00 0.00 0.00 3.85
2887 3016 2.084546 GCAAAAAGATACCGCACCTCT 58.915 47.619 0.00 0.00 0.00 3.69
2888 3017 2.096013 GCAAAAAGATACCGCACCTCTC 59.904 50.000 0.00 0.00 0.00 3.20
2889 3018 3.600388 CAAAAAGATACCGCACCTCTCT 58.400 45.455 0.00 0.00 0.00 3.10
2890 3019 3.528597 AAAAGATACCGCACCTCTCTC 57.471 47.619 0.00 0.00 0.00 3.20
2891 3020 1.404843 AAGATACCGCACCTCTCTCC 58.595 55.000 0.00 0.00 0.00 3.71
2892 3021 0.259065 AGATACCGCACCTCTCTCCA 59.741 55.000 0.00 0.00 0.00 3.86
2893 3022 0.386113 GATACCGCACCTCTCTCCAC 59.614 60.000 0.00 0.00 0.00 4.02
2894 3023 0.324368 ATACCGCACCTCTCTCCACA 60.324 55.000 0.00 0.00 0.00 4.17
2895 3024 0.324368 TACCGCACCTCTCTCCACAT 60.324 55.000 0.00 0.00 0.00 3.21
2896 3025 1.194781 ACCGCACCTCTCTCCACATT 61.195 55.000 0.00 0.00 0.00 2.71
2897 3026 0.036010 CCGCACCTCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
2898 3027 1.081892 CGCACCTCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
2899 3028 0.807496 GCACCTCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
2900 3029 1.883638 GCACCTCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
2901 3030 2.082231 CACCTCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
2902 3031 1.980765 ACCTCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
2903 3032 2.575279 ACCTCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
2904 3033 3.776969 ACCTCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
2905 3034 4.225942 ACCTCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
2906 3035 4.815308 CCTCTCTCCACATTTGCAGATAAG 59.185 45.833 0.00 0.00 0.00 1.73
2907 3036 4.774124 TCTCTCCACATTTGCAGATAAGG 58.226 43.478 0.00 0.00 0.00 2.69
2908 3037 3.282021 TCTCCACATTTGCAGATAAGGC 58.718 45.455 0.00 0.00 0.00 4.35
2909 3038 2.360165 CTCCACATTTGCAGATAAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
2910 3039 2.025037 TCCACATTTGCAGATAAGGCCT 60.025 45.455 0.00 0.00 0.00 5.19
2911 3040 2.762327 CCACATTTGCAGATAAGGCCTT 59.238 45.455 24.18 24.18 0.00 4.35
2912 3041 3.181483 CCACATTTGCAGATAAGGCCTTC 60.181 47.826 24.49 9.18 0.00 3.46
2913 3042 3.026694 ACATTTGCAGATAAGGCCTTCC 58.973 45.455 24.49 15.44 0.00 3.46
2914 3043 2.143876 TTTGCAGATAAGGCCTTCCC 57.856 50.000 24.49 15.04 0.00 3.97
2916 3045 0.839946 TGCAGATAAGGCCTTCCCTC 59.160 55.000 24.49 17.06 45.62 4.30
2917 3046 0.250081 GCAGATAAGGCCTTCCCTCG 60.250 60.000 24.49 14.56 45.62 4.63
2918 3047 1.123928 CAGATAAGGCCTTCCCTCGT 58.876 55.000 24.49 0.00 45.62 4.18
2919 3048 1.486726 CAGATAAGGCCTTCCCTCGTT 59.513 52.381 24.49 0.00 45.62 3.85
2920 3049 2.092914 CAGATAAGGCCTTCCCTCGTTT 60.093 50.000 24.49 0.00 45.62 3.60
2921 3050 3.134081 CAGATAAGGCCTTCCCTCGTTTA 59.866 47.826 24.49 0.18 45.62 2.01
2922 3051 3.974642 AGATAAGGCCTTCCCTCGTTTAT 59.025 43.478 24.49 6.25 45.62 1.40
2923 3052 2.711978 AAGGCCTTCCCTCGTTTATC 57.288 50.000 13.78 0.00 45.62 1.75
2924 3053 1.880941 AGGCCTTCCCTCGTTTATCT 58.119 50.000 0.00 0.00 41.21 1.98
2925 3054 2.197465 AGGCCTTCCCTCGTTTATCTT 58.803 47.619 0.00 0.00 41.21 2.40
2926 3055 2.576648 AGGCCTTCCCTCGTTTATCTTT 59.423 45.455 0.00 0.00 41.21 2.52
2927 3056 3.778629 AGGCCTTCCCTCGTTTATCTTTA 59.221 43.478 0.00 0.00 41.21 1.85
2928 3057 4.412528 AGGCCTTCCCTCGTTTATCTTTAT 59.587 41.667 0.00 0.00 41.21 1.40
2929 3058 4.755629 GGCCTTCCCTCGTTTATCTTTATC 59.244 45.833 0.00 0.00 0.00 1.75
2930 3059 5.454897 GGCCTTCCCTCGTTTATCTTTATCT 60.455 44.000 0.00 0.00 0.00 1.98
2931 3060 5.697178 GCCTTCCCTCGTTTATCTTTATCTC 59.303 44.000 0.00 0.00 0.00 2.75
2932 3061 6.224584 CCTTCCCTCGTTTATCTTTATCTCC 58.775 44.000 0.00 0.00 0.00 3.71
2933 3062 5.803237 TCCCTCGTTTATCTTTATCTCCC 57.197 43.478 0.00 0.00 0.00 4.30
2934 3063 5.213519 TCCCTCGTTTATCTTTATCTCCCA 58.786 41.667 0.00 0.00 0.00 4.37
2935 3064 5.070047 TCCCTCGTTTATCTTTATCTCCCAC 59.930 44.000 0.00 0.00 0.00 4.61
2936 3065 5.163343 CCCTCGTTTATCTTTATCTCCCACA 60.163 44.000 0.00 0.00 0.00 4.17
2937 3066 6.346096 CCTCGTTTATCTTTATCTCCCACAA 58.654 40.000 0.00 0.00 0.00 3.33
2938 3067 6.258068 CCTCGTTTATCTTTATCTCCCACAAC 59.742 42.308 0.00 0.00 0.00 3.32
2939 3068 6.110707 TCGTTTATCTTTATCTCCCACAACC 58.889 40.000 0.00 0.00 0.00 3.77
2940 3069 6.070424 TCGTTTATCTTTATCTCCCACAACCT 60.070 38.462 0.00 0.00 0.00 3.50
2941 3070 6.258068 CGTTTATCTTTATCTCCCACAACCTC 59.742 42.308 0.00 0.00 0.00 3.85
2942 3071 6.884472 TTATCTTTATCTCCCACAACCTCA 57.116 37.500 0.00 0.00 0.00 3.86
2943 3072 5.983333 ATCTTTATCTCCCACAACCTCAT 57.017 39.130 0.00 0.00 0.00 2.90
2944 3073 5.779241 TCTTTATCTCCCACAACCTCATT 57.221 39.130 0.00 0.00 0.00 2.57
2945 3074 5.500234 TCTTTATCTCCCACAACCTCATTG 58.500 41.667 0.00 0.00 44.60 2.82
2959 3088 7.712264 CAACCTCATTGTTGAGCAATTAAAA 57.288 32.000 0.00 0.00 46.77 1.52
2960 3089 8.140677 CAACCTCATTGTTGAGCAATTAAAAA 57.859 30.769 0.00 0.00 46.77 1.94
2982 3111 8.837788 AAAAAGAAAGCCTTTGAATAATCTGG 57.162 30.769 0.00 0.00 43.90 3.86
2983 3112 5.588958 AGAAAGCCTTTGAATAATCTGGC 57.411 39.130 0.00 0.00 37.38 4.85
2984 3113 5.018809 AGAAAGCCTTTGAATAATCTGGCA 58.981 37.500 0.00 0.00 38.59 4.92
2985 3114 5.659971 AGAAAGCCTTTGAATAATCTGGCAT 59.340 36.000 0.00 0.00 38.59 4.40
2986 3115 4.931661 AGCCTTTGAATAATCTGGCATG 57.068 40.909 0.00 0.00 38.59 4.06
2987 3116 4.539726 AGCCTTTGAATAATCTGGCATGA 58.460 39.130 0.00 0.00 38.59 3.07
2988 3117 5.145564 AGCCTTTGAATAATCTGGCATGAT 58.854 37.500 0.00 0.00 38.59 2.45
2989 3118 5.010719 AGCCTTTGAATAATCTGGCATGATG 59.989 40.000 0.00 0.00 38.59 3.07
2990 3119 5.779922 CCTTTGAATAATCTGGCATGATGG 58.220 41.667 0.00 0.00 0.00 3.51
2991 3120 4.859304 TTGAATAATCTGGCATGATGGC 57.141 40.909 12.54 12.54 44.03 4.40
3009 3138 4.953868 CGTTGCCGGTGTCGTCCA 62.954 66.667 1.90 0.00 33.95 4.02
3010 3139 2.358247 GTTGCCGGTGTCGTCCAT 60.358 61.111 1.90 0.00 33.95 3.41
3011 3140 2.047655 TTGCCGGTGTCGTCCATC 60.048 61.111 1.90 0.00 33.95 3.51
3012 3141 3.599285 TTGCCGGTGTCGTCCATCC 62.599 63.158 1.90 0.00 33.95 3.51
3013 3142 4.832608 GCCGGTGTCGTCCATCCC 62.833 72.222 1.90 0.00 33.95 3.85
3014 3143 4.157120 CCGGTGTCGTCCATCCCC 62.157 72.222 0.00 0.00 33.95 4.81
3015 3144 3.387091 CGGTGTCGTCCATCCCCA 61.387 66.667 0.00 0.00 0.00 4.96
3016 3145 2.731571 CGGTGTCGTCCATCCCCAT 61.732 63.158 0.00 0.00 0.00 4.00
3017 3146 1.153168 GGTGTCGTCCATCCCCATG 60.153 63.158 0.00 0.00 0.00 3.66
3018 3147 1.819632 GTGTCGTCCATCCCCATGC 60.820 63.158 0.00 0.00 0.00 4.06
3019 3148 2.203209 GTCGTCCATCCCCATGCC 60.203 66.667 0.00 0.00 0.00 4.40
3020 3149 2.690510 TCGTCCATCCCCATGCCA 60.691 61.111 0.00 0.00 0.00 4.92
3021 3150 2.516930 CGTCCATCCCCATGCCAC 60.517 66.667 0.00 0.00 0.00 5.01
3022 3151 2.682846 GTCCATCCCCATGCCACA 59.317 61.111 0.00 0.00 0.00 4.17
3023 3152 1.754234 GTCCATCCCCATGCCACAC 60.754 63.158 0.00 0.00 0.00 3.82
3024 3153 1.930133 TCCATCCCCATGCCACACT 60.930 57.895 0.00 0.00 0.00 3.55
3025 3154 1.454479 CCATCCCCATGCCACACTC 60.454 63.158 0.00 0.00 0.00 3.51
3026 3155 1.454479 CATCCCCATGCCACACTCC 60.454 63.158 0.00 0.00 0.00 3.85
3027 3156 3.047807 ATCCCCATGCCACACTCCG 62.048 63.158 0.00 0.00 0.00 4.63
3028 3157 3.716195 CCCCATGCCACACTCCGA 61.716 66.667 0.00 0.00 0.00 4.55
3029 3158 2.436646 CCCATGCCACACTCCGAC 60.437 66.667 0.00 0.00 0.00 4.79
3030 3159 2.436646 CCATGCCACACTCCGACC 60.437 66.667 0.00 0.00 0.00 4.79
3031 3160 2.347114 CATGCCACACTCCGACCA 59.653 61.111 0.00 0.00 0.00 4.02
3032 3161 2.034879 CATGCCACACTCCGACCAC 61.035 63.158 0.00 0.00 0.00 4.16
3033 3162 3.254024 ATGCCACACTCCGACCACC 62.254 63.158 0.00 0.00 0.00 4.61
3034 3163 3.936203 GCCACACTCCGACCACCA 61.936 66.667 0.00 0.00 0.00 4.17
3035 3164 2.825982 CCACACTCCGACCACCAA 59.174 61.111 0.00 0.00 0.00 3.67
3036 3165 1.374947 CCACACTCCGACCACCAAT 59.625 57.895 0.00 0.00 0.00 3.16
3037 3166 0.673644 CCACACTCCGACCACCAATC 60.674 60.000 0.00 0.00 0.00 2.67
3038 3167 0.034756 CACACTCCGACCACCAATCA 59.965 55.000 0.00 0.00 0.00 2.57
3039 3168 0.984230 ACACTCCGACCACCAATCAT 59.016 50.000 0.00 0.00 0.00 2.45
3040 3169 1.066143 ACACTCCGACCACCAATCATC 60.066 52.381 0.00 0.00 0.00 2.92
3041 3170 1.066215 CACTCCGACCACCAATCATCA 60.066 52.381 0.00 0.00 0.00 3.07
3042 3171 1.066143 ACTCCGACCACCAATCATCAC 60.066 52.381 0.00 0.00 0.00 3.06
3043 3172 0.251916 TCCGACCACCAATCATCACC 59.748 55.000 0.00 0.00 0.00 4.02
3044 3173 0.035534 CCGACCACCAATCATCACCA 60.036 55.000 0.00 0.00 0.00 4.17
3045 3174 1.086696 CGACCACCAATCATCACCAC 58.913 55.000 0.00 0.00 0.00 4.16
3046 3175 1.086696 GACCACCAATCATCACCACG 58.913 55.000 0.00 0.00 0.00 4.94
3047 3176 0.960364 ACCACCAATCATCACCACGC 60.960 55.000 0.00 0.00 0.00 5.34
3048 3177 1.656818 CCACCAATCATCACCACGCC 61.657 60.000 0.00 0.00 0.00 5.68
3049 3178 1.378514 ACCAATCATCACCACGCCC 60.379 57.895 0.00 0.00 0.00 6.13
3050 3179 2.120909 CCAATCATCACCACGCCCC 61.121 63.158 0.00 0.00 0.00 5.80
3051 3180 1.378382 CAATCATCACCACGCCCCA 60.378 57.895 0.00 0.00 0.00 4.96
3052 3181 1.378514 AATCATCACCACGCCCCAC 60.379 57.895 0.00 0.00 0.00 4.61
3053 3182 1.852157 AATCATCACCACGCCCCACT 61.852 55.000 0.00 0.00 0.00 4.00
3054 3183 2.257409 ATCATCACCACGCCCCACTC 62.257 60.000 0.00 0.00 0.00 3.51
3055 3184 3.717294 ATCACCACGCCCCACTCC 61.717 66.667 0.00 0.00 0.00 3.85
3056 3185 4.954118 TCACCACGCCCCACTCCT 62.954 66.667 0.00 0.00 0.00 3.69
3057 3186 4.394712 CACCACGCCCCACTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
3060 3189 3.775654 CACGCCCCACTCCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
3061 3190 4.316823 ACGCCCCACTCCTCCTCA 62.317 66.667 0.00 0.00 0.00 3.86
3062 3191 3.775654 CGCCCCACTCCTCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
3063 3192 3.403558 GCCCCACTCCTCCTCACC 61.404 72.222 0.00 0.00 0.00 4.02
3064 3193 2.452114 CCCCACTCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
3065 3194 1.229658 CCCCACTCCTCCTCACCTT 60.230 63.158 0.00 0.00 0.00 3.50
3066 3195 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.000 0.00 0.00 0.00 2.69
3067 3196 1.344496 CCCCACTCCTCCTCACCTTAT 60.344 57.143 0.00 0.00 0.00 1.73
3068 3197 2.043227 CCCACTCCTCCTCACCTTATC 58.957 57.143 0.00 0.00 0.00 1.75
3069 3198 2.359781 CCCACTCCTCCTCACCTTATCT 60.360 54.545 0.00 0.00 0.00 1.98
3070 3199 2.962421 CCACTCCTCCTCACCTTATCTC 59.038 54.545 0.00 0.00 0.00 2.75
3071 3200 3.373658 CCACTCCTCCTCACCTTATCTCT 60.374 52.174 0.00 0.00 0.00 3.10
3072 3201 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
3073 3202 3.529734 ACTCCTCCTCACCTTATCTCTCA 59.470 47.826 0.00 0.00 0.00 3.27
3074 3203 4.169856 ACTCCTCCTCACCTTATCTCTCAT 59.830 45.833 0.00 0.00 0.00 2.90
3075 3204 5.147032 CTCCTCCTCACCTTATCTCTCATT 58.853 45.833 0.00 0.00 0.00 2.57
3076 3205 5.533112 TCCTCCTCACCTTATCTCTCATTT 58.467 41.667 0.00 0.00 0.00 2.32
3077 3206 5.966935 TCCTCCTCACCTTATCTCTCATTTT 59.033 40.000 0.00 0.00 0.00 1.82
3078 3207 6.445139 TCCTCCTCACCTTATCTCTCATTTTT 59.555 38.462 0.00 0.00 0.00 1.94
3079 3208 6.765512 CCTCCTCACCTTATCTCTCATTTTTC 59.234 42.308 0.00 0.00 0.00 2.29
3080 3209 7.365473 CCTCCTCACCTTATCTCTCATTTTTCT 60.365 40.741 0.00 0.00 0.00 2.52
3081 3210 7.560368 TCCTCACCTTATCTCTCATTTTTCTC 58.440 38.462 0.00 0.00 0.00 2.87
3082 3211 6.478344 CCTCACCTTATCTCTCATTTTTCTCG 59.522 42.308 0.00 0.00 0.00 4.04
3083 3212 7.170393 TCACCTTATCTCTCATTTTTCTCGA 57.830 36.000 0.00 0.00 0.00 4.04
3084 3213 7.261325 TCACCTTATCTCTCATTTTTCTCGAG 58.739 38.462 5.93 5.93 0.00 4.04
3085 3214 7.122799 TCACCTTATCTCTCATTTTTCTCGAGA 59.877 37.037 12.08 12.08 35.46 4.04
3086 3215 7.925483 CACCTTATCTCTCATTTTTCTCGAGAT 59.075 37.037 17.44 0.00 42.34 2.75
3087 3216 9.137459 ACCTTATCTCTCATTTTTCTCGAGATA 57.863 33.333 17.44 8.98 40.69 1.98
3093 3222 9.689976 TCTCTCATTTTTCTCGAGATATCATTC 57.310 33.333 17.44 0.00 35.35 2.67
3094 3223 8.512800 TCTCATTTTTCTCGAGATATCATTCG 57.487 34.615 17.44 6.76 38.13 3.34
3095 3224 8.138074 TCTCATTTTTCTCGAGATATCATTCGT 58.862 33.333 17.44 0.00 37.99 3.85
3096 3225 8.648557 TCATTTTTCTCGAGATATCATTCGTT 57.351 30.769 17.44 0.00 37.99 3.85
3097 3226 9.098355 TCATTTTTCTCGAGATATCATTCGTTT 57.902 29.630 17.44 0.00 37.99 3.60
3098 3227 9.708222 CATTTTTCTCGAGATATCATTCGTTTT 57.292 29.630 17.44 0.00 37.99 2.43
3102 3231 8.920509 TTCTCGAGATATCATTCGTTTTTACA 57.079 30.769 17.44 0.00 37.99 2.41
3103 3232 8.336498 TCTCGAGATATCATTCGTTTTTACAC 57.664 34.615 12.08 0.00 37.99 2.90
3104 3233 7.971722 TCTCGAGATATCATTCGTTTTTACACA 59.028 33.333 12.08 0.00 37.99 3.72
3105 3234 8.642908 TCGAGATATCATTCGTTTTTACACAT 57.357 30.769 12.49 0.00 37.99 3.21
3106 3235 8.539674 TCGAGATATCATTCGTTTTTACACATG 58.460 33.333 12.49 0.00 37.99 3.21
3107 3236 7.793888 CGAGATATCATTCGTTTTTACACATGG 59.206 37.037 5.32 0.00 32.44 3.66
3108 3237 7.930217 AGATATCATTCGTTTTTACACATGGG 58.070 34.615 5.32 0.00 0.00 4.00
3109 3238 7.773224 AGATATCATTCGTTTTTACACATGGGA 59.227 33.333 0.00 0.00 0.00 4.37
3110 3239 6.773976 ATCATTCGTTTTTACACATGGGAT 57.226 33.333 0.00 0.00 0.00 3.85
3111 3240 6.582677 TCATTCGTTTTTACACATGGGATT 57.417 33.333 0.00 0.00 0.00 3.01
3112 3241 7.689446 TCATTCGTTTTTACACATGGGATTA 57.311 32.000 0.00 0.00 0.00 1.75
3113 3242 7.531716 TCATTCGTTTTTACACATGGGATTAC 58.468 34.615 0.00 0.00 0.00 1.89
3114 3243 7.392113 TCATTCGTTTTTACACATGGGATTACT 59.608 33.333 0.00 0.00 0.00 2.24
3115 3244 6.730960 TCGTTTTTACACATGGGATTACTC 57.269 37.500 0.00 0.00 0.00 2.59
3116 3245 5.644636 TCGTTTTTACACATGGGATTACTCC 59.355 40.000 0.00 0.00 41.26 3.85
3125 3254 3.780624 GGATTACTCCCGCATGTGT 57.219 52.632 5.38 0.00 35.28 3.72
3126 3255 1.583054 GGATTACTCCCGCATGTGTC 58.417 55.000 5.38 0.00 35.28 3.67
3127 3256 1.134521 GGATTACTCCCGCATGTGTCA 60.135 52.381 5.38 0.00 35.28 3.58
3128 3257 2.627945 GATTACTCCCGCATGTGTCAA 58.372 47.619 5.38 0.00 0.00 3.18
3129 3258 2.779755 TTACTCCCGCATGTGTCAAT 57.220 45.000 5.38 0.00 0.00 2.57
3130 3259 2.309528 TACTCCCGCATGTGTCAATC 57.690 50.000 5.38 0.00 0.00 2.67
3131 3260 0.324614 ACTCCCGCATGTGTCAATCA 59.675 50.000 5.38 0.00 0.00 2.57
3132 3261 1.065199 ACTCCCGCATGTGTCAATCAT 60.065 47.619 5.38 0.00 0.00 2.45
3133 3262 2.170397 ACTCCCGCATGTGTCAATCATA 59.830 45.455 5.38 0.00 0.00 2.15
3134 3263 3.205338 CTCCCGCATGTGTCAATCATAA 58.795 45.455 5.38 0.00 0.00 1.90
3135 3264 2.942376 TCCCGCATGTGTCAATCATAAC 59.058 45.455 5.38 0.00 0.00 1.89
3136 3265 2.682352 CCCGCATGTGTCAATCATAACA 59.318 45.455 5.38 0.00 0.00 2.41
3137 3266 3.242837 CCCGCATGTGTCAATCATAACAG 60.243 47.826 5.38 0.00 0.00 3.16
3138 3267 3.242837 CCGCATGTGTCAATCATAACAGG 60.243 47.826 5.38 0.00 0.00 4.00
3139 3268 3.374988 CGCATGTGTCAATCATAACAGGT 59.625 43.478 0.00 0.00 0.00 4.00
3140 3269 4.665212 GCATGTGTCAATCATAACAGGTG 58.335 43.478 0.00 0.00 0.00 4.00
3141 3270 4.156556 GCATGTGTCAATCATAACAGGTGT 59.843 41.667 0.00 0.00 0.00 4.16
3142 3271 5.335897 GCATGTGTCAATCATAACAGGTGTT 60.336 40.000 0.24 0.24 41.73 3.32
3143 3272 6.680810 CATGTGTCAATCATAACAGGTGTTT 58.319 36.000 0.00 0.00 39.31 2.83
3144 3273 6.707440 TGTGTCAATCATAACAGGTGTTTT 57.293 33.333 0.00 0.00 39.31 2.43
3145 3274 6.502652 TGTGTCAATCATAACAGGTGTTTTG 58.497 36.000 0.00 3.94 39.31 2.44
3146 3275 6.096141 TGTGTCAATCATAACAGGTGTTTTGT 59.904 34.615 11.50 0.22 37.91 2.83
3147 3276 6.417635 GTGTCAATCATAACAGGTGTTTTGTG 59.582 38.462 11.50 5.73 37.91 3.33
3148 3277 5.402270 GTCAATCATAACAGGTGTTTTGTGC 59.598 40.000 11.50 2.07 37.91 4.57
3149 3278 5.068329 TCAATCATAACAGGTGTTTTGTGCA 59.932 36.000 11.50 0.00 37.91 4.57
3150 3279 4.991153 TCATAACAGGTGTTTTGTGCAA 57.009 36.364 11.50 0.00 37.91 4.08
3151 3280 5.330455 TCATAACAGGTGTTTTGTGCAAA 57.670 34.783 11.50 0.00 37.91 3.68
3152 3281 5.347342 TCATAACAGGTGTTTTGTGCAAAG 58.653 37.500 11.50 0.00 37.91 2.77
3153 3282 3.951775 AACAGGTGTTTTGTGCAAAGA 57.048 38.095 0.00 0.00 33.93 2.52
3154 3283 3.951775 ACAGGTGTTTTGTGCAAAGAA 57.048 38.095 0.00 0.00 0.00 2.52
3155 3284 4.264460 ACAGGTGTTTTGTGCAAAGAAA 57.736 36.364 0.00 0.00 0.00 2.52
3156 3285 4.636249 ACAGGTGTTTTGTGCAAAGAAAA 58.364 34.783 0.00 0.00 0.00 2.29
3157 3286 5.244755 ACAGGTGTTTTGTGCAAAGAAAAT 58.755 33.333 0.00 0.00 0.00 1.82
3158 3287 6.402222 ACAGGTGTTTTGTGCAAAGAAAATA 58.598 32.000 0.00 0.00 0.00 1.40
3159 3288 7.047271 ACAGGTGTTTTGTGCAAAGAAAATAT 58.953 30.769 0.00 0.00 0.00 1.28
3160 3289 7.224557 ACAGGTGTTTTGTGCAAAGAAAATATC 59.775 33.333 0.00 0.00 0.00 1.63
3161 3290 7.439056 CAGGTGTTTTGTGCAAAGAAAATATCT 59.561 33.333 0.00 0.00 41.32 1.98
3174 3303 6.124088 AGAAAATATCTTGATGTTCCGTGC 57.876 37.500 0.00 0.00 33.39 5.34
3175 3304 5.647658 AGAAAATATCTTGATGTTCCGTGCA 59.352 36.000 0.00 0.00 33.39 4.57
3176 3305 5.895636 AAATATCTTGATGTTCCGTGCAA 57.104 34.783 0.00 0.00 0.00 4.08
3177 3306 6.455360 AAATATCTTGATGTTCCGTGCAAT 57.545 33.333 0.00 0.00 0.00 3.56
3178 3307 3.770263 ATCTTGATGTTCCGTGCAATG 57.230 42.857 0.00 0.00 0.00 2.82
3179 3308 1.199789 TCTTGATGTTCCGTGCAATGC 59.800 47.619 0.00 0.00 0.00 3.56
3180 3309 0.957362 TTGATGTTCCGTGCAATGCA 59.043 45.000 2.72 2.72 35.60 3.96
3195 3324 4.792106 GCACGGGCATTTTGCTAG 57.208 55.556 3.77 0.00 44.28 3.42
3196 3325 1.883021 GCACGGGCATTTTGCTAGT 59.117 52.632 3.77 0.00 44.28 2.57
3197 3326 1.091537 GCACGGGCATTTTGCTAGTA 58.908 50.000 3.77 0.00 44.28 1.82
3198 3327 1.470890 GCACGGGCATTTTGCTAGTAA 59.529 47.619 3.77 0.00 44.28 2.24
3199 3328 2.731027 GCACGGGCATTTTGCTAGTAAC 60.731 50.000 3.77 0.00 44.28 2.50
3200 3329 2.747446 CACGGGCATTTTGCTAGTAACT 59.253 45.455 0.00 0.00 44.28 2.24
3201 3330 3.007635 ACGGGCATTTTGCTAGTAACTC 58.992 45.455 0.00 0.00 44.28 3.01
3202 3331 3.006940 CGGGCATTTTGCTAGTAACTCA 58.993 45.455 0.00 0.00 44.28 3.41
3203 3332 3.438781 CGGGCATTTTGCTAGTAACTCAA 59.561 43.478 0.00 0.00 44.28 3.02
3204 3333 4.083003 CGGGCATTTTGCTAGTAACTCAAA 60.083 41.667 0.00 0.00 44.28 2.69
3205 3334 5.563867 CGGGCATTTTGCTAGTAACTCAAAA 60.564 40.000 7.40 7.40 44.28 2.44
3206 3335 5.863935 GGGCATTTTGCTAGTAACTCAAAAG 59.136 40.000 9.89 5.27 44.28 2.27
3207 3336 6.294508 GGGCATTTTGCTAGTAACTCAAAAGA 60.295 38.462 9.89 0.00 44.28 2.52
3208 3337 7.315890 GGCATTTTGCTAGTAACTCAAAAGAT 58.684 34.615 9.89 0.00 44.28 2.40
3209 3338 7.814587 GGCATTTTGCTAGTAACTCAAAAGATT 59.185 33.333 9.89 0.00 44.28 2.40
3210 3339 8.642020 GCATTTTGCTAGTAACTCAAAAGATTG 58.358 33.333 9.89 6.07 41.23 2.67
3211 3340 9.897744 CATTTTGCTAGTAACTCAAAAGATTGA 57.102 29.630 9.89 0.00 43.18 2.57
3254 3383 6.497624 TTTTTAGCATATGGGCCATCAATT 57.502 33.333 25.07 10.35 0.00 2.32
3255 3384 5.726980 TTTAGCATATGGGCCATCAATTC 57.273 39.130 25.07 6.55 0.00 2.17
3256 3385 3.247948 AGCATATGGGCCATCAATTCA 57.752 42.857 25.07 4.23 0.00 2.57
3257 3386 3.578978 AGCATATGGGCCATCAATTCAA 58.421 40.909 25.07 3.35 0.00 2.69
3258 3387 3.968649 AGCATATGGGCCATCAATTCAAA 59.031 39.130 25.07 2.46 0.00 2.69
3259 3388 4.409574 AGCATATGGGCCATCAATTCAAAA 59.590 37.500 25.07 1.60 0.00 2.44
3260 3389 5.104444 AGCATATGGGCCATCAATTCAAAAA 60.104 36.000 25.07 0.72 0.00 1.94
3318 3447 6.810888 ACATATTAATGTTTCGTGCAATGC 57.189 33.333 0.00 0.00 44.07 3.56
3319 3448 6.328714 ACATATTAATGTTTCGTGCAATGCA 58.671 32.000 2.72 2.72 44.07 3.96
3334 3463 4.792106 GCACGGGCATTTTGCTAG 57.208 55.556 3.77 0.00 44.28 3.42
3340 3469 4.201970 GCACGGGCATTTTGCTAGTTATAA 60.202 41.667 3.77 0.00 44.28 0.98
3431 3560 2.175931 GTCATCTACTCCCTCTCCCTCA 59.824 54.545 0.00 0.00 0.00 3.86
3473 3602 9.151471 TCTTTTTAGAGATTCCAATAAGTGACG 57.849 33.333 0.00 0.00 0.00 4.35
3480 3609 6.873997 AGATTCCAATAAGTGACGACATACA 58.126 36.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.997874 GTGGCTCCTGGATCCTGGT 60.998 63.158 30.69 0.00 36.57 4.00
235 236 5.933187 AACAGCACGTGAATTGTATTACA 57.067 34.783 22.23 0.00 0.00 2.41
237 238 5.872617 AGCTAACAGCACGTGAATTGTATTA 59.127 36.000 22.23 9.10 45.56 0.98
239 240 4.093408 CAGCTAACAGCACGTGAATTGTAT 59.907 41.667 22.23 12.22 45.56 2.29
249 250 1.428448 TAACAGCAGCTAACAGCACG 58.572 50.000 0.00 0.00 45.56 5.34
298 299 6.201044 CGTGCTCTTCATTTTTATAGATCGGT 59.799 38.462 0.00 0.00 0.00 4.69
441 446 8.884124 ACTGGAATATTTCTGGATTTTTCTCA 57.116 30.769 5.69 0.00 0.00 3.27
498 505 5.714863 ACTCATTATCTCTGGATCCTGTCT 58.285 41.667 14.23 4.69 33.71 3.41
531 647 5.205565 CAGTGAGAAAACTAAACGCCTTTC 58.794 41.667 0.00 0.00 0.00 2.62
559 675 5.892348 AGAAAATGTAGGGTGGACTCAAAT 58.108 37.500 0.00 0.00 0.00 2.32
1141 1270 2.895865 CCTGATCTGCGCTGCTGG 60.896 66.667 9.73 6.21 0.00 4.85
2523 2652 7.496920 CAGCTGACCACTAGAAAATCAATCATA 59.503 37.037 8.42 0.00 0.00 2.15
2582 2711 8.726988 GCATTACCTCATTAGTTGTCAAAGTAA 58.273 33.333 0.00 0.00 36.01 2.24
2583 2712 8.100791 AGCATTACCTCATTAGTTGTCAAAGTA 58.899 33.333 0.00 0.00 0.00 2.24
2584 2713 6.942576 AGCATTACCTCATTAGTTGTCAAAGT 59.057 34.615 0.00 0.00 0.00 2.66
2585 2714 7.383102 AGCATTACCTCATTAGTTGTCAAAG 57.617 36.000 0.00 0.00 0.00 2.77
2586 2715 7.759489 AAGCATTACCTCATTAGTTGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
2587 2716 7.759489 AAAGCATTACCTCATTAGTTGTCAA 57.241 32.000 0.00 0.00 0.00 3.18
2588 2717 8.856153 TTAAAGCATTACCTCATTAGTTGTCA 57.144 30.769 0.00 0.00 0.00 3.58
2777 2906 1.431488 CGCCATCATCACCAACTCGG 61.431 60.000 0.00 0.00 42.50 4.63
2778 2907 0.740868 ACGCCATCATCACCAACTCG 60.741 55.000 0.00 0.00 0.00 4.18
2779 2908 0.729116 CACGCCATCATCACCAACTC 59.271 55.000 0.00 0.00 0.00 3.01
2780 2909 0.036732 ACACGCCATCATCACCAACT 59.963 50.000 0.00 0.00 0.00 3.16
2781 2910 0.447801 GACACGCCATCATCACCAAC 59.552 55.000 0.00 0.00 0.00 3.77
2782 2911 0.324614 AGACACGCCATCATCACCAA 59.675 50.000 0.00 0.00 0.00 3.67
2783 2912 0.391528 CAGACACGCCATCATCACCA 60.392 55.000 0.00 0.00 0.00 4.17
2784 2913 1.709147 GCAGACACGCCATCATCACC 61.709 60.000 0.00 0.00 0.00 4.02
2785 2914 1.717937 GCAGACACGCCATCATCAC 59.282 57.895 0.00 0.00 0.00 3.06
2786 2915 4.206958 GCAGACACGCCATCATCA 57.793 55.556 0.00 0.00 0.00 3.07
2794 2923 1.438651 TTGTAAGATGGCAGACACGC 58.561 50.000 0.00 0.00 0.00 5.34
2795 2924 6.363626 GTCTATATTGTAAGATGGCAGACACG 59.636 42.308 0.00 0.00 32.19 4.49
2796 2925 6.647067 GGTCTATATTGTAAGATGGCAGACAC 59.353 42.308 0.00 0.00 33.26 3.67
2797 2926 6.516693 CGGTCTATATTGTAAGATGGCAGACA 60.517 42.308 0.00 0.00 33.26 3.41
2798 2927 5.864474 CGGTCTATATTGTAAGATGGCAGAC 59.136 44.000 0.00 0.00 0.00 3.51
2799 2928 5.538813 ACGGTCTATATTGTAAGATGGCAGA 59.461 40.000 0.00 0.00 0.00 4.26
2800 2929 5.784177 ACGGTCTATATTGTAAGATGGCAG 58.216 41.667 0.00 0.00 0.00 4.85
2801 2930 5.538813 AGACGGTCTATATTGTAAGATGGCA 59.461 40.000 9.33 0.00 0.00 4.92
2802 2931 5.864474 CAGACGGTCTATATTGTAAGATGGC 59.136 44.000 10.87 0.00 0.00 4.40
2803 2932 7.215719 TCAGACGGTCTATATTGTAAGATGG 57.784 40.000 10.87 0.00 0.00 3.51
2804 2933 8.735315 AGATCAGACGGTCTATATTGTAAGATG 58.265 37.037 10.87 0.00 0.00 2.90
2805 2934 8.871629 AGATCAGACGGTCTATATTGTAAGAT 57.128 34.615 10.87 5.98 0.00 2.40
2806 2935 9.961264 ATAGATCAGACGGTCTATATTGTAAGA 57.039 33.333 10.87 0.96 36.24 2.10
2814 2943 8.880750 CGTCAAATATAGATCAGACGGTCTATA 58.119 37.037 10.87 5.26 43.44 1.31
2815 2944 7.753659 CGTCAAATATAGATCAGACGGTCTAT 58.246 38.462 10.87 3.01 43.44 1.98
2816 2945 7.130303 CGTCAAATATAGATCAGACGGTCTA 57.870 40.000 10.87 0.24 43.44 2.59
2817 2946 6.003234 CGTCAAATATAGATCAGACGGTCT 57.997 41.667 4.45 4.45 43.44 3.85
2855 2984 9.243637 GCGGTATCTTTTTGCAAAATTATCATA 57.756 29.630 24.39 12.99 0.00 2.15
2856 2985 7.763528 TGCGGTATCTTTTTGCAAAATTATCAT 59.236 29.630 24.39 13.84 31.69 2.45
2857 2986 7.062839 GTGCGGTATCTTTTTGCAAAATTATCA 59.937 33.333 24.39 9.07 37.30 2.15
2858 2987 7.391016 GTGCGGTATCTTTTTGCAAAATTATC 58.609 34.615 24.39 15.16 37.30 1.75
2859 2988 6.312672 GGTGCGGTATCTTTTTGCAAAATTAT 59.687 34.615 24.39 20.70 37.30 1.28
2860 2989 5.635700 GGTGCGGTATCTTTTTGCAAAATTA 59.364 36.000 24.39 15.75 37.30 1.40
2861 2990 4.450757 GGTGCGGTATCTTTTTGCAAAATT 59.549 37.500 24.39 14.72 37.30 1.82
2862 2991 3.993736 GGTGCGGTATCTTTTTGCAAAAT 59.006 39.130 24.39 12.94 37.30 1.82
2863 2992 3.068873 AGGTGCGGTATCTTTTTGCAAAA 59.931 39.130 20.46 20.46 37.30 2.44
2864 2993 2.625790 AGGTGCGGTATCTTTTTGCAAA 59.374 40.909 8.05 8.05 37.30 3.68
2865 2994 2.227865 GAGGTGCGGTATCTTTTTGCAA 59.772 45.455 0.00 0.00 37.30 4.08
2866 2995 1.810151 GAGGTGCGGTATCTTTTTGCA 59.190 47.619 0.00 0.00 0.00 4.08
2867 2996 2.084546 AGAGGTGCGGTATCTTTTTGC 58.915 47.619 0.00 0.00 0.00 3.68
2868 2997 3.600388 AGAGAGGTGCGGTATCTTTTTG 58.400 45.455 0.00 0.00 0.00 2.44
2869 2998 3.369576 GGAGAGAGGTGCGGTATCTTTTT 60.370 47.826 0.00 0.00 0.00 1.94
2870 2999 2.168728 GGAGAGAGGTGCGGTATCTTTT 59.831 50.000 0.00 0.00 0.00 2.27
2871 3000 1.757699 GGAGAGAGGTGCGGTATCTTT 59.242 52.381 0.00 0.00 0.00 2.52
2872 3001 1.342076 TGGAGAGAGGTGCGGTATCTT 60.342 52.381 0.00 0.00 0.00 2.40
2873 3002 0.259065 TGGAGAGAGGTGCGGTATCT 59.741 55.000 0.00 0.00 0.00 1.98
2874 3003 0.386113 GTGGAGAGAGGTGCGGTATC 59.614 60.000 0.00 0.00 0.00 2.24
2875 3004 0.324368 TGTGGAGAGAGGTGCGGTAT 60.324 55.000 0.00 0.00 0.00 2.73
2876 3005 0.324368 ATGTGGAGAGAGGTGCGGTA 60.324 55.000 0.00 0.00 0.00 4.02
2877 3006 1.194781 AATGTGGAGAGAGGTGCGGT 61.195 55.000 0.00 0.00 0.00 5.68
2878 3007 0.036010 AAATGTGGAGAGAGGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
2879 3008 1.081892 CAAATGTGGAGAGAGGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
2880 3009 0.807496 GCAAATGTGGAGAGAGGTGC 59.193 55.000 0.00 0.00 0.00 5.01
2881 3010 2.082231 CTGCAAATGTGGAGAGAGGTG 58.918 52.381 0.00 0.00 45.65 4.00
2882 3011 1.980765 TCTGCAAATGTGGAGAGAGGT 59.019 47.619 2.39 0.00 46.25 3.85
2883 3012 2.775911 TCTGCAAATGTGGAGAGAGG 57.224 50.000 2.39 0.00 46.25 3.69
2888 3017 2.360165 GGCCTTATCTGCAAATGTGGAG 59.640 50.000 0.00 0.00 44.23 3.86
2889 3018 2.025037 AGGCCTTATCTGCAAATGTGGA 60.025 45.455 0.00 0.00 0.00 4.02
2890 3019 2.381911 AGGCCTTATCTGCAAATGTGG 58.618 47.619 0.00 0.00 0.00 4.17
2891 3020 3.181483 GGAAGGCCTTATCTGCAAATGTG 60.181 47.826 20.54 0.00 0.00 3.21
2892 3021 3.026694 GGAAGGCCTTATCTGCAAATGT 58.973 45.455 20.54 0.00 0.00 2.71
2893 3022 2.363359 GGGAAGGCCTTATCTGCAAATG 59.637 50.000 20.54 0.00 0.00 2.32
2894 3023 2.245806 AGGGAAGGCCTTATCTGCAAAT 59.754 45.455 20.54 0.00 0.00 2.32
2895 3024 1.640670 AGGGAAGGCCTTATCTGCAAA 59.359 47.619 20.54 0.00 0.00 3.68
2896 3025 1.212935 GAGGGAAGGCCTTATCTGCAA 59.787 52.381 20.54 0.00 0.00 4.08
2897 3026 0.839946 GAGGGAAGGCCTTATCTGCA 59.160 55.000 20.54 0.00 0.00 4.41
2898 3027 0.250081 CGAGGGAAGGCCTTATCTGC 60.250 60.000 20.54 5.12 0.00 4.26
2899 3028 1.123928 ACGAGGGAAGGCCTTATCTG 58.876 55.000 20.54 14.43 0.00 2.90
2900 3029 1.880941 AACGAGGGAAGGCCTTATCT 58.119 50.000 20.54 18.47 0.00 1.98
2901 3030 2.711978 AAACGAGGGAAGGCCTTATC 57.288 50.000 20.54 15.67 0.00 1.75
2902 3031 3.974642 AGATAAACGAGGGAAGGCCTTAT 59.025 43.478 20.54 7.60 0.00 1.73
2903 3032 3.381335 AGATAAACGAGGGAAGGCCTTA 58.619 45.455 20.54 0.00 0.00 2.69
2904 3033 2.197465 AGATAAACGAGGGAAGGCCTT 58.803 47.619 20.65 20.65 0.00 4.35
2905 3034 1.880941 AGATAAACGAGGGAAGGCCT 58.119 50.000 0.00 0.00 0.00 5.19
2906 3035 2.711978 AAGATAAACGAGGGAAGGCC 57.288 50.000 0.00 0.00 0.00 5.19
2907 3036 5.612351 AGATAAAGATAAACGAGGGAAGGC 58.388 41.667 0.00 0.00 0.00 4.35
2908 3037 6.224584 GGAGATAAAGATAAACGAGGGAAGG 58.775 44.000 0.00 0.00 0.00 3.46
2909 3038 6.183360 TGGGAGATAAAGATAAACGAGGGAAG 60.183 42.308 0.00 0.00 0.00 3.46
2910 3039 5.664006 TGGGAGATAAAGATAAACGAGGGAA 59.336 40.000 0.00 0.00 0.00 3.97
2911 3040 5.070047 GTGGGAGATAAAGATAAACGAGGGA 59.930 44.000 0.00 0.00 0.00 4.20
2912 3041 5.163343 TGTGGGAGATAAAGATAAACGAGGG 60.163 44.000 0.00 0.00 0.00 4.30
2913 3042 5.914033 TGTGGGAGATAAAGATAAACGAGG 58.086 41.667 0.00 0.00 0.00 4.63
2914 3043 6.258068 GGTTGTGGGAGATAAAGATAAACGAG 59.742 42.308 0.00 0.00 0.00 4.18
2915 3044 6.070424 AGGTTGTGGGAGATAAAGATAAACGA 60.070 38.462 0.00 0.00 0.00 3.85
2916 3045 6.113411 AGGTTGTGGGAGATAAAGATAAACG 58.887 40.000 0.00 0.00 0.00 3.60
2917 3046 7.110155 TGAGGTTGTGGGAGATAAAGATAAAC 58.890 38.462 0.00 0.00 0.00 2.01
2918 3047 7.265599 TGAGGTTGTGGGAGATAAAGATAAA 57.734 36.000 0.00 0.00 0.00 1.40
2919 3048 6.884472 TGAGGTTGTGGGAGATAAAGATAA 57.116 37.500 0.00 0.00 0.00 1.75
2920 3049 7.282585 CAATGAGGTTGTGGGAGATAAAGATA 58.717 38.462 0.00 0.00 33.01 1.98
2921 3050 5.983333 ATGAGGTTGTGGGAGATAAAGAT 57.017 39.130 0.00 0.00 0.00 2.40
2922 3051 5.500234 CAATGAGGTTGTGGGAGATAAAGA 58.500 41.667 0.00 0.00 33.01 2.52
2923 3052 5.824904 CAATGAGGTTGTGGGAGATAAAG 57.175 43.478 0.00 0.00 33.01 1.85
2957 3086 7.388776 GCCAGATTATTCAAAGGCTTTCTTTTT 59.611 33.333 10.08 0.00 42.62 1.94
2958 3087 6.875726 GCCAGATTATTCAAAGGCTTTCTTTT 59.124 34.615 10.08 0.00 42.62 2.27
2959 3088 6.014327 TGCCAGATTATTCAAAGGCTTTCTTT 60.014 34.615 10.08 0.00 45.85 2.52
2960 3089 5.481473 TGCCAGATTATTCAAAGGCTTTCTT 59.519 36.000 10.08 0.36 42.46 2.52
2961 3090 5.018809 TGCCAGATTATTCAAAGGCTTTCT 58.981 37.500 10.08 0.00 42.46 2.52
2962 3091 5.329035 TGCCAGATTATTCAAAGGCTTTC 57.671 39.130 10.08 0.00 42.46 2.62
2963 3092 5.422970 TCATGCCAGATTATTCAAAGGCTTT 59.577 36.000 6.68 6.68 42.46 3.51
2964 3093 4.957954 TCATGCCAGATTATTCAAAGGCTT 59.042 37.500 0.00 0.00 42.46 4.35
2965 3094 4.539726 TCATGCCAGATTATTCAAAGGCT 58.460 39.130 13.36 0.00 42.46 4.58
2966 3095 4.924305 TCATGCCAGATTATTCAAAGGC 57.076 40.909 0.00 0.00 42.32 4.35
2967 3096 5.779922 CCATCATGCCAGATTATTCAAAGG 58.220 41.667 0.00 0.00 0.00 3.11
2968 3097 5.227908 GCCATCATGCCAGATTATTCAAAG 58.772 41.667 0.00 0.00 0.00 2.77
2969 3098 5.204409 GCCATCATGCCAGATTATTCAAA 57.796 39.130 0.00 0.00 0.00 2.69
2970 3099 4.859304 GCCATCATGCCAGATTATTCAA 57.141 40.909 0.00 0.00 0.00 2.69
2996 3125 4.832608 GGGATGGACGACACCGGC 62.833 72.222 0.00 0.00 44.80 6.13
2997 3126 4.157120 GGGGATGGACGACACCGG 62.157 72.222 0.00 0.00 40.78 5.28
2998 3127 2.731571 ATGGGGATGGACGACACCG 61.732 63.158 0.00 0.00 42.50 4.94
2999 3128 1.153168 CATGGGGATGGACGACACC 60.153 63.158 0.00 0.00 0.00 4.16
3000 3129 1.819632 GCATGGGGATGGACGACAC 60.820 63.158 0.00 0.00 0.00 3.67
3001 3130 2.589540 GCATGGGGATGGACGACA 59.410 61.111 0.00 0.00 0.00 4.35
3002 3131 2.203209 GGCATGGGGATGGACGAC 60.203 66.667 0.00 0.00 0.00 4.34
3003 3132 2.690510 TGGCATGGGGATGGACGA 60.691 61.111 0.00 0.00 0.00 4.20
3004 3133 2.516930 GTGGCATGGGGATGGACG 60.517 66.667 0.00 0.00 0.00 4.79
3005 3134 1.754234 GTGTGGCATGGGGATGGAC 60.754 63.158 0.00 0.00 0.00 4.02
3006 3135 1.925285 GAGTGTGGCATGGGGATGGA 61.925 60.000 0.00 0.00 0.00 3.41
3007 3136 1.454479 GAGTGTGGCATGGGGATGG 60.454 63.158 0.00 0.00 0.00 3.51
3008 3137 1.454479 GGAGTGTGGCATGGGGATG 60.454 63.158 0.00 0.00 0.00 3.51
3009 3138 3.010144 GGAGTGTGGCATGGGGAT 58.990 61.111 0.00 0.00 0.00 3.85
3010 3139 3.716195 CGGAGTGTGGCATGGGGA 61.716 66.667 0.00 0.00 0.00 4.81
3011 3140 3.716195 TCGGAGTGTGGCATGGGG 61.716 66.667 0.00 0.00 0.00 4.96
3012 3141 2.436646 GTCGGAGTGTGGCATGGG 60.437 66.667 0.00 0.00 0.00 4.00
3013 3142 2.436646 GGTCGGAGTGTGGCATGG 60.437 66.667 0.00 0.00 0.00 3.66
3014 3143 2.034879 GTGGTCGGAGTGTGGCATG 61.035 63.158 0.00 0.00 0.00 4.06
3015 3144 2.347490 GTGGTCGGAGTGTGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
3016 3145 3.936203 GGTGGTCGGAGTGTGGCA 61.936 66.667 0.00 0.00 0.00 4.92
3017 3146 2.748058 ATTGGTGGTCGGAGTGTGGC 62.748 60.000 0.00 0.00 0.00 5.01
3018 3147 0.673644 GATTGGTGGTCGGAGTGTGG 60.674 60.000 0.00 0.00 0.00 4.17
3019 3148 0.034756 TGATTGGTGGTCGGAGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
3020 3149 0.984230 ATGATTGGTGGTCGGAGTGT 59.016 50.000 0.00 0.00 0.00 3.55
3021 3150 1.066215 TGATGATTGGTGGTCGGAGTG 60.066 52.381 0.00 0.00 0.00 3.51
3022 3151 1.066143 GTGATGATTGGTGGTCGGAGT 60.066 52.381 0.00 0.00 0.00 3.85
3023 3152 1.656652 GTGATGATTGGTGGTCGGAG 58.343 55.000 0.00 0.00 0.00 4.63
3024 3153 0.251916 GGTGATGATTGGTGGTCGGA 59.748 55.000 0.00 0.00 0.00 4.55
3025 3154 0.035534 TGGTGATGATTGGTGGTCGG 60.036 55.000 0.00 0.00 0.00 4.79
3026 3155 1.086696 GTGGTGATGATTGGTGGTCG 58.913 55.000 0.00 0.00 0.00 4.79
3027 3156 1.086696 CGTGGTGATGATTGGTGGTC 58.913 55.000 0.00 0.00 0.00 4.02
3028 3157 0.960364 GCGTGGTGATGATTGGTGGT 60.960 55.000 0.00 0.00 0.00 4.16
3029 3158 1.656818 GGCGTGGTGATGATTGGTGG 61.657 60.000 0.00 0.00 0.00 4.61
3030 3159 1.656818 GGGCGTGGTGATGATTGGTG 61.657 60.000 0.00 0.00 0.00 4.17
3031 3160 1.378514 GGGCGTGGTGATGATTGGT 60.379 57.895 0.00 0.00 0.00 3.67
3032 3161 2.120909 GGGGCGTGGTGATGATTGG 61.121 63.158 0.00 0.00 0.00 3.16
3033 3162 1.378382 TGGGGCGTGGTGATGATTG 60.378 57.895 0.00 0.00 0.00 2.67
3034 3163 1.378514 GTGGGGCGTGGTGATGATT 60.379 57.895 0.00 0.00 0.00 2.57
3035 3164 2.257409 GAGTGGGGCGTGGTGATGAT 62.257 60.000 0.00 0.00 0.00 2.45
3036 3165 2.927856 AGTGGGGCGTGGTGATGA 60.928 61.111 0.00 0.00 0.00 2.92
3037 3166 2.436646 GAGTGGGGCGTGGTGATG 60.437 66.667 0.00 0.00 0.00 3.07
3038 3167 3.717294 GGAGTGGGGCGTGGTGAT 61.717 66.667 0.00 0.00 0.00 3.06
3039 3168 4.954118 AGGAGTGGGGCGTGGTGA 62.954 66.667 0.00 0.00 0.00 4.02
3040 3169 4.394712 GAGGAGTGGGGCGTGGTG 62.395 72.222 0.00 0.00 0.00 4.17
3043 3172 3.775654 GAGGAGGAGTGGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
3044 3173 4.316823 TGAGGAGGAGTGGGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
3045 3174 3.775654 GTGAGGAGGAGTGGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
3046 3175 3.403558 GGTGAGGAGGAGTGGGGC 61.404 72.222 0.00 0.00 0.00 5.80
3047 3176 0.042731 TAAGGTGAGGAGGAGTGGGG 59.957 60.000 0.00 0.00 0.00 4.96
3048 3177 2.043227 GATAAGGTGAGGAGGAGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
3049 3178 2.962421 GAGATAAGGTGAGGAGGAGTGG 59.038 54.545 0.00 0.00 0.00 4.00
3050 3179 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
3051 3180 3.529734 TGAGAGATAAGGTGAGGAGGAGT 59.470 47.826 0.00 0.00 0.00 3.85
3052 3181 4.177537 TGAGAGATAAGGTGAGGAGGAG 57.822 50.000 0.00 0.00 0.00 3.69
3053 3182 4.823364 ATGAGAGATAAGGTGAGGAGGA 57.177 45.455 0.00 0.00 0.00 3.71
3054 3183 5.885449 AAATGAGAGATAAGGTGAGGAGG 57.115 43.478 0.00 0.00 0.00 4.30
3055 3184 7.563906 AGAAAAATGAGAGATAAGGTGAGGAG 58.436 38.462 0.00 0.00 0.00 3.69
3056 3185 7.502060 AGAAAAATGAGAGATAAGGTGAGGA 57.498 36.000 0.00 0.00 0.00 3.71
3057 3186 6.478344 CGAGAAAAATGAGAGATAAGGTGAGG 59.522 42.308 0.00 0.00 0.00 3.86
3058 3187 7.261325 TCGAGAAAAATGAGAGATAAGGTGAG 58.739 38.462 0.00 0.00 0.00 3.51
3059 3188 7.122799 TCTCGAGAAAAATGAGAGATAAGGTGA 59.877 37.037 14.01 0.00 34.00 4.02
3060 3189 7.261325 TCTCGAGAAAAATGAGAGATAAGGTG 58.739 38.462 14.01 0.00 34.00 4.00
3061 3190 7.411486 TCTCGAGAAAAATGAGAGATAAGGT 57.589 36.000 14.01 0.00 34.00 3.50
3067 3196 9.689976 GAATGATATCTCGAGAAAAATGAGAGA 57.310 33.333 20.91 0.00 41.65 3.10
3068 3197 8.637704 CGAATGATATCTCGAGAAAAATGAGAG 58.362 37.037 20.91 3.70 41.65 3.20
3069 3198 8.138074 ACGAATGATATCTCGAGAAAAATGAGA 58.862 33.333 20.91 0.00 42.47 3.27
3070 3199 8.291888 ACGAATGATATCTCGAGAAAAATGAG 57.708 34.615 20.91 10.21 38.43 2.90
3071 3200 8.648557 AACGAATGATATCTCGAGAAAAATGA 57.351 30.769 20.91 8.22 38.43 2.57
3072 3201 9.708222 AAAACGAATGATATCTCGAGAAAAATG 57.292 29.630 20.91 7.38 38.43 2.32
3076 3205 9.361315 TGTAAAAACGAATGATATCTCGAGAAA 57.639 29.630 20.91 6.08 38.43 2.52
3077 3206 8.804743 GTGTAAAAACGAATGATATCTCGAGAA 58.195 33.333 20.91 9.41 38.43 2.87
3078 3207 7.971722 TGTGTAAAAACGAATGATATCTCGAGA 59.028 33.333 19.19 19.19 38.43 4.04
3079 3208 8.115491 TGTGTAAAAACGAATGATATCTCGAG 57.885 34.615 18.17 5.93 38.43 4.04
3080 3209 8.539674 CATGTGTAAAAACGAATGATATCTCGA 58.460 33.333 18.17 0.00 38.43 4.04
3081 3210 7.793888 CCATGTGTAAAAACGAATGATATCTCG 59.206 37.037 11.61 11.61 40.87 4.04
3082 3211 8.070171 CCCATGTGTAAAAACGAATGATATCTC 58.930 37.037 3.98 0.00 0.00 2.75
3083 3212 7.773224 TCCCATGTGTAAAAACGAATGATATCT 59.227 33.333 3.98 0.00 0.00 1.98
3084 3213 7.925993 TCCCATGTGTAAAAACGAATGATATC 58.074 34.615 0.00 0.00 0.00 1.63
3085 3214 7.873719 TCCCATGTGTAAAAACGAATGATAT 57.126 32.000 0.00 0.00 0.00 1.63
3086 3215 7.873719 ATCCCATGTGTAAAAACGAATGATA 57.126 32.000 0.00 0.00 0.00 2.15
3087 3216 6.773976 ATCCCATGTGTAAAAACGAATGAT 57.226 33.333 0.00 0.00 0.00 2.45
3088 3217 6.582677 AATCCCATGTGTAAAAACGAATGA 57.417 33.333 0.00 0.00 0.00 2.57
3089 3218 7.535139 AGTAATCCCATGTGTAAAAACGAATG 58.465 34.615 0.00 0.00 0.00 2.67
3090 3219 7.148137 GGAGTAATCCCATGTGTAAAAACGAAT 60.148 37.037 0.00 0.00 0.00 3.34
3091 3220 6.149807 GGAGTAATCCCATGTGTAAAAACGAA 59.850 38.462 0.00 0.00 0.00 3.85
3092 3221 5.644636 GGAGTAATCCCATGTGTAAAAACGA 59.355 40.000 0.00 0.00 0.00 3.85
3093 3222 5.875930 GGAGTAATCCCATGTGTAAAAACG 58.124 41.667 0.00 0.00 0.00 3.60
3106 3235 0.180406 ACACATGCGGGAGTAATCCC 59.820 55.000 18.69 18.69 46.43 3.85
3107 3236 1.134521 TGACACATGCGGGAGTAATCC 60.135 52.381 0.00 0.00 0.00 3.01
3108 3237 2.309528 TGACACATGCGGGAGTAATC 57.690 50.000 0.00 0.00 0.00 1.75
3109 3238 2.779755 TTGACACATGCGGGAGTAAT 57.220 45.000 0.00 0.00 0.00 1.89
3110 3239 2.027653 TGATTGACACATGCGGGAGTAA 60.028 45.455 0.00 0.00 0.00 2.24
3111 3240 1.552792 TGATTGACACATGCGGGAGTA 59.447 47.619 0.00 0.00 0.00 2.59
3112 3241 0.324614 TGATTGACACATGCGGGAGT 59.675 50.000 0.00 0.00 0.00 3.85
3113 3242 1.671979 ATGATTGACACATGCGGGAG 58.328 50.000 0.00 0.00 0.00 4.30
3114 3243 2.942376 GTTATGATTGACACATGCGGGA 59.058 45.455 0.00 0.00 0.00 5.14
3115 3244 2.682352 TGTTATGATTGACACATGCGGG 59.318 45.455 0.00 0.00 0.00 6.13
3116 3245 3.242837 CCTGTTATGATTGACACATGCGG 60.243 47.826 0.00 0.00 0.00 5.69
3117 3246 3.374988 ACCTGTTATGATTGACACATGCG 59.625 43.478 0.00 0.00 0.00 4.73
3118 3247 4.156556 ACACCTGTTATGATTGACACATGC 59.843 41.667 0.00 0.00 0.00 4.06
3119 3248 5.885230 ACACCTGTTATGATTGACACATG 57.115 39.130 0.00 0.00 0.00 3.21
3120 3249 6.899393 AAACACCTGTTATGATTGACACAT 57.101 33.333 0.00 0.00 37.25 3.21
3121 3250 6.096141 ACAAAACACCTGTTATGATTGACACA 59.904 34.615 7.13 0.00 37.25 3.72
3122 3251 6.417635 CACAAAACACCTGTTATGATTGACAC 59.582 38.462 7.13 0.00 37.25 3.67
3123 3252 6.502652 CACAAAACACCTGTTATGATTGACA 58.497 36.000 7.13 0.00 37.25 3.58
3124 3253 5.402270 GCACAAAACACCTGTTATGATTGAC 59.598 40.000 7.13 0.00 37.25 3.18
3125 3254 5.068329 TGCACAAAACACCTGTTATGATTGA 59.932 36.000 7.13 0.00 37.25 2.57
3126 3255 5.288015 TGCACAAAACACCTGTTATGATTG 58.712 37.500 0.00 0.00 37.25 2.67
3127 3256 5.528043 TGCACAAAACACCTGTTATGATT 57.472 34.783 0.00 0.00 37.25 2.57
3128 3257 5.528043 TTGCACAAAACACCTGTTATGAT 57.472 34.783 0.00 0.00 37.25 2.45
3129 3258 4.991153 TTGCACAAAACACCTGTTATGA 57.009 36.364 0.00 0.00 37.25 2.15
3130 3259 5.347342 TCTTTGCACAAAACACCTGTTATG 58.653 37.500 0.00 0.00 37.25 1.90
3131 3260 5.590530 TCTTTGCACAAAACACCTGTTAT 57.409 34.783 0.00 0.00 37.25 1.89
3132 3261 5.392767 TTCTTTGCACAAAACACCTGTTA 57.607 34.783 0.00 0.00 37.25 2.41
3133 3262 3.951775 TCTTTGCACAAAACACCTGTT 57.048 38.095 0.00 0.00 40.50 3.16
3134 3263 3.951775 TTCTTTGCACAAAACACCTGT 57.048 38.095 0.00 0.00 0.00 4.00
3135 3264 5.799681 ATTTTCTTTGCACAAAACACCTG 57.200 34.783 0.00 0.00 0.00 4.00
3136 3265 7.500141 AGATATTTTCTTTGCACAAAACACCT 58.500 30.769 0.00 0.00 0.00 4.00
3137 3266 7.713764 AGATATTTTCTTTGCACAAAACACC 57.286 32.000 0.00 0.00 0.00 4.16
3138 3267 8.816144 TCAAGATATTTTCTTTGCACAAAACAC 58.184 29.630 0.00 0.00 42.15 3.32
3139 3268 8.939201 TCAAGATATTTTCTTTGCACAAAACA 57.061 26.923 0.00 0.00 42.15 2.83
3140 3269 9.801714 CATCAAGATATTTTCTTTGCACAAAAC 57.198 29.630 0.00 0.00 42.15 2.43
3141 3270 9.545105 ACATCAAGATATTTTCTTTGCACAAAA 57.455 25.926 0.00 0.00 42.15 2.44
3142 3271 9.545105 AACATCAAGATATTTTCTTTGCACAAA 57.455 25.926 0.00 0.00 42.15 2.83
3143 3272 9.195411 GAACATCAAGATATTTTCTTTGCACAA 57.805 29.630 0.00 0.00 42.15 3.33
3144 3273 7.814107 GGAACATCAAGATATTTTCTTTGCACA 59.186 33.333 0.00 0.00 42.15 4.57
3145 3274 7.008628 CGGAACATCAAGATATTTTCTTTGCAC 59.991 37.037 0.00 0.00 42.15 4.57
3146 3275 7.028962 CGGAACATCAAGATATTTTCTTTGCA 58.971 34.615 0.00 0.00 42.15 4.08
3147 3276 7.008628 CACGGAACATCAAGATATTTTCTTTGC 59.991 37.037 0.00 0.00 42.15 3.68
3148 3277 7.008628 GCACGGAACATCAAGATATTTTCTTTG 59.991 37.037 0.00 0.00 42.15 2.77
3149 3278 7.029563 GCACGGAACATCAAGATATTTTCTTT 58.970 34.615 0.00 0.00 42.15 2.52
3150 3279 6.150976 TGCACGGAACATCAAGATATTTTCTT 59.849 34.615 0.00 0.00 45.83 2.52
3151 3280 5.647658 TGCACGGAACATCAAGATATTTTCT 59.352 36.000 0.00 0.00 35.70 2.52
3152 3281 5.879237 TGCACGGAACATCAAGATATTTTC 58.121 37.500 0.00 0.00 0.00 2.29
3153 3282 5.895636 TGCACGGAACATCAAGATATTTT 57.104 34.783 0.00 0.00 0.00 1.82
3154 3283 5.895636 TTGCACGGAACATCAAGATATTT 57.104 34.783 0.00 0.00 0.00 1.40
3155 3284 5.734220 GCATTGCACGGAACATCAAGATATT 60.734 40.000 3.15 0.00 0.00 1.28
3156 3285 4.261322 GCATTGCACGGAACATCAAGATAT 60.261 41.667 3.15 0.00 0.00 1.63
3157 3286 3.065233 GCATTGCACGGAACATCAAGATA 59.935 43.478 3.15 0.00 0.00 1.98
3158 3287 2.159338 GCATTGCACGGAACATCAAGAT 60.159 45.455 3.15 0.00 0.00 2.40
3159 3288 1.199789 GCATTGCACGGAACATCAAGA 59.800 47.619 3.15 0.00 0.00 3.02
3160 3289 1.068402 TGCATTGCACGGAACATCAAG 60.068 47.619 7.38 0.00 31.71 3.02
3161 3290 0.957362 TGCATTGCACGGAACATCAA 59.043 45.000 7.38 0.00 31.71 2.57
3162 3291 2.638744 TGCATTGCACGGAACATCA 58.361 47.368 7.38 0.00 31.71 3.07
3178 3307 1.091537 TACTAGCAAAATGCCCGTGC 58.908 50.000 0.00 0.00 46.52 5.34
3179 3308 2.747446 AGTTACTAGCAAAATGCCCGTG 59.253 45.455 0.00 0.00 46.52 4.94
3180 3309 3.007635 GAGTTACTAGCAAAATGCCCGT 58.992 45.455 0.00 0.00 46.52 5.28
3181 3310 3.006940 TGAGTTACTAGCAAAATGCCCG 58.993 45.455 0.00 0.00 46.52 6.13
3182 3311 5.385509 TTTGAGTTACTAGCAAAATGCCC 57.614 39.130 0.00 0.00 46.52 5.36
3183 3312 6.677913 TCTTTTGAGTTACTAGCAAAATGCC 58.322 36.000 10.85 0.00 46.52 4.40
3184 3313 8.642020 CAATCTTTTGAGTTACTAGCAAAATGC 58.358 33.333 10.85 0.00 39.77 3.56
3185 3314 9.897744 TCAATCTTTTGAGTTACTAGCAAAATG 57.102 29.630 10.85 8.01 39.77 2.32
3231 3360 6.099413 TGAATTGATGGCCCATATGCTAAAAA 59.901 34.615 0.00 0.00 0.00 1.94
3232 3361 5.601729 TGAATTGATGGCCCATATGCTAAAA 59.398 36.000 0.00 0.00 0.00 1.52
3233 3362 5.146298 TGAATTGATGGCCCATATGCTAAA 58.854 37.500 0.00 0.00 0.00 1.85
3234 3363 4.738685 TGAATTGATGGCCCATATGCTAA 58.261 39.130 0.00 0.00 0.00 3.09
3235 3364 4.385478 TGAATTGATGGCCCATATGCTA 57.615 40.909 0.00 0.00 0.00 3.49
3236 3365 3.247948 TGAATTGATGGCCCATATGCT 57.752 42.857 0.00 0.00 0.00 3.79
3237 3366 4.339872 TTTGAATTGATGGCCCATATGC 57.660 40.909 0.00 0.00 0.00 3.14
3294 3423 6.810676 TGCATTGCACGAAACATTAATATGTT 59.189 30.769 7.38 0.00 44.07 2.71
3295 3424 6.328714 TGCATTGCACGAAACATTAATATGT 58.671 32.000 7.38 0.00 39.14 2.29
3296 3425 6.809297 TGCATTGCACGAAACATTAATATG 57.191 33.333 7.38 0.00 33.86 1.78
3317 3446 0.243636 AACTAGCAAAATGCCCGTGC 59.756 50.000 0.00 0.00 46.52 5.34
3318 3447 5.493133 TTATAACTAGCAAAATGCCCGTG 57.507 39.130 0.00 0.00 46.52 4.94
3319 3448 4.578928 CCTTATAACTAGCAAAATGCCCGT 59.421 41.667 0.00 0.00 46.52 5.28
3320 3449 4.578928 ACCTTATAACTAGCAAAATGCCCG 59.421 41.667 0.00 0.00 46.52 6.13
3321 3450 7.576861 TTACCTTATAACTAGCAAAATGCCC 57.423 36.000 0.00 0.00 46.52 5.36
3322 3451 9.516314 CTTTTACCTTATAACTAGCAAAATGCC 57.484 33.333 0.00 0.00 46.52 4.40
3328 3457 9.832445 CCTGATCTTTTACCTTATAACTAGCAA 57.168 33.333 0.00 0.00 0.00 3.91
3329 3458 9.209048 TCCTGATCTTTTACCTTATAACTAGCA 57.791 33.333 0.00 0.00 0.00 3.49
3333 3462 8.368668 CCGATCCTGATCTTTTACCTTATAACT 58.631 37.037 5.66 0.00 35.72 2.24
3334 3463 7.603024 CCCGATCCTGATCTTTTACCTTATAAC 59.397 40.741 5.66 0.00 35.72 1.89
3340 3469 2.104963 GCCCGATCCTGATCTTTTACCT 59.895 50.000 5.66 0.00 35.72 3.08
3375 3504 2.899838 GCAGGTGACCAACGCACA 60.900 61.111 3.63 0.00 37.99 4.57
3473 3602 9.167311 AGGTTCATTCATTTTACTCTGTATGTC 57.833 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.