Multiple sequence alignment - TraesCS6D01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G194900 chr6D 100.000 9727 0 0 1 9727 270581650 270591376 0.000000e+00 17963.0
1 TraesCS6D01G194900 chr6D 99.804 5096 6 1 3774 8869 270687398 270692489 0.000000e+00 9352.0
2 TraesCS6D01G194900 chr6D 98.718 546 6 1 9182 9727 270692967 270693511 0.000000e+00 968.0
3 TraesCS6D01G194900 chr6D 97.701 174 4 0 5715 5888 392896968 392897141 5.710000e-77 300.0
4 TraesCS6D01G194900 chr6D 97.333 150 4 0 9040 9189 270692658 270692807 1.250000e-63 255.0
5 TraesCS6D01G194900 chr6D 97.345 113 1 1 8870 8980 270692529 270692641 3.590000e-44 191.0
6 TraesCS6D01G194900 chr6A 98.642 3535 47 1 886 4419 386898696 386895162 0.000000e+00 6261.0
7 TraesCS6D01G194900 chr6A 94.795 3343 95 26 5884 9189 386893863 386890563 0.000000e+00 5136.0
8 TraesCS6D01G194900 chr6A 98.294 1114 12 2 4612 5725 386894970 386893864 0.000000e+00 1945.0
9 TraesCS6D01G194900 chr6A 96.241 133 3 2 747 878 386898869 386898738 5.920000e-52 217.0
10 TraesCS6D01G194900 chr2D 96.738 1717 35 3 3287 4997 630685221 630683520 0.000000e+00 2841.0
11 TraesCS6D01G194900 chr2D 98.280 756 12 1 2546 3300 630686485 630685730 0.000000e+00 1323.0
12 TraesCS6D01G194900 chr2D 94.083 676 35 5 1 671 36580398 36579723 0.000000e+00 1022.0
13 TraesCS6D01G194900 chr2D 92.444 675 43 7 1 671 362291569 362290899 0.000000e+00 957.0
14 TraesCS6D01G194900 chr6B 96.979 1655 44 3 7182 8830 423191248 423189594 0.000000e+00 2774.0
15 TraesCS6D01G194900 chr6B 96.661 1198 29 6 6068 7254 423192451 423191254 0.000000e+00 1980.0
16 TraesCS6D01G194900 chr6B 92.075 1388 91 10 3026 4409 423201651 423200279 0.000000e+00 1936.0
17 TraesCS6D01G194900 chr6B 92.006 1251 59 16 1606 2846 423202870 423201651 0.000000e+00 1718.0
18 TraesCS6D01G194900 chr6B 92.958 923 49 12 4405 5317 423194366 423193450 0.000000e+00 1330.0
19 TraesCS6D01G194900 chr6B 95.141 638 24 2 887 1518 423204030 423203394 0.000000e+00 1000.0
20 TraesCS6D01G194900 chr6B 92.719 673 43 5 1 668 4466118 4466789 0.000000e+00 966.0
21 TraesCS6D01G194900 chr6B 92.571 673 44 5 1 668 4463084 4463755 0.000000e+00 961.0
22 TraesCS6D01G194900 chr6B 91.283 413 27 4 5319 5725 423193417 423193008 1.100000e-153 555.0
23 TraesCS6D01G194900 chr6B 86.913 298 25 5 8895 9189 423189398 423189112 1.220000e-83 322.0
24 TraesCS6D01G194900 chr6B 88.559 236 18 6 9182 9417 423188946 423188720 2.680000e-70 278.0
25 TraesCS6D01G194900 chr6B 92.784 194 9 4 5883 6071 423193013 423192820 9.620000e-70 276.0
26 TraesCS6D01G194900 chr6B 95.238 168 7 1 668 834 423204584 423204417 2.080000e-66 265.0
27 TraesCS6D01G194900 chr6B 81.959 194 22 2 9546 9727 423188701 423188509 1.690000e-32 152.0
28 TraesCS6D01G194900 chr6B 90.517 116 6 2 1506 1617 423203007 423202893 2.190000e-31 148.0
29 TraesCS6D01G194900 chr2A 94.377 1405 36 10 6068 7461 734976659 734975287 0.000000e+00 2117.0
30 TraesCS6D01G194900 chr2A 77.778 234 35 15 5203 5423 9138773 9138544 2.850000e-25 128.0
31 TraesCS6D01G194900 chr2A 89.474 57 6 0 8978 9034 191400584 191400640 1.360000e-08 73.1
32 TraesCS6D01G194900 chr2A 93.478 46 3 0 8989 9034 192541910 192541955 1.750000e-07 69.4
33 TraesCS6D01G194900 chr3D 94.776 670 30 4 1 668 100469333 100469999 0.000000e+00 1038.0
34 TraesCS6D01G194900 chr3D 89.950 398 30 5 7048 7435 419585217 419584820 1.130000e-138 505.0
35 TraesCS6D01G194900 chr3D 93.469 245 16 0 7191 7435 459884672 459884428 2.000000e-96 364.0
36 TraesCS6D01G194900 chr5D 94.469 669 35 2 1 668 133506757 133507424 0.000000e+00 1029.0
37 TraesCS6D01G194900 chr4D 93.006 672 39 7 3 668 477373710 477373041 0.000000e+00 974.0
38 TraesCS6D01G194900 chr4D 97.159 176 3 2 5722 5895 477898795 477898970 7.390000e-76 296.0
39 TraesCS6D01G194900 chr4D 98.214 168 3 0 5722 5889 75782217 75782050 2.660000e-75 294.0
40 TraesCS6D01G194900 chr4D 94.180 189 8 3 5722 5909 46028701 46028515 1.600000e-72 285.0
41 TraesCS6D01G194900 chr7D 92.719 673 43 5 1 668 133689182 133689853 0.000000e+00 966.0
42 TraesCS6D01G194900 chr7D 92.526 669 40 2 1 668 458370910 458370251 0.000000e+00 950.0
43 TraesCS6D01G194900 chrUn 93.469 245 16 0 7191 7435 425657896 425658140 2.000000e-96 364.0
44 TraesCS6D01G194900 chr1D 93.469 245 16 0 7191 7435 156283767 156284011 2.000000e-96 364.0
45 TraesCS6D01G194900 chr1D 92.653 245 18 0 7191 7435 11357652 11357896 4.320000e-93 353.0
46 TraesCS6D01G194900 chr4A 98.225 169 3 0 5718 5886 732790022 732790190 7.390000e-76 296.0
47 TraesCS6D01G194900 chr4A 87.356 87 8 3 5211 5295 533449010 533449095 8.040000e-16 97.1
48 TraesCS6D01G194900 chr2B 98.225 169 3 0 5722 5890 174794822 174794990 7.390000e-76 296.0
49 TraesCS6D01G194900 chr1B 97.661 171 4 0 5722 5892 628050851 628050681 2.660000e-75 294.0
50 TraesCS6D01G194900 chr1B 93.194 191 11 2 5719 5908 278469371 278469560 7.440000e-71 279.0
51 TraesCS6D01G194900 chr5B 88.971 136 11 4 7035 7169 509466949 509467081 2.170000e-36 165.0
52 TraesCS6D01G194900 chr5B 76.030 267 38 19 5212 5460 414830337 414830079 2.220000e-21 115.0
53 TraesCS6D01G194900 chr4B 91.379 116 8 2 6161 6275 178352851 178352965 3.640000e-34 158.0
54 TraesCS6D01G194900 chr4B 87.640 89 7 4 5209 5295 93286439 93286353 6.220000e-17 100.0
55 TraesCS6D01G194900 chr5A 79.878 164 26 7 5195 5353 314672223 314672062 7.980000e-21 113.0
56 TraesCS6D01G194900 chr7B 82.051 117 12 9 5195 5307 506016921 506017032 3.740000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G194900 chr6D 270581650 270591376 9726 False 17963.000 17963 100.0000 1 9727 1 chr6D.!!$F1 9726
1 TraesCS6D01G194900 chr6D 270687398 270693511 6113 False 2691.500 9352 98.3000 3774 9727 4 chr6D.!!$F3 5953
2 TraesCS6D01G194900 chr6A 386890563 386898869 8306 True 3389.750 6261 96.9930 747 9189 4 chr6A.!!$R1 8442
3 TraesCS6D01G194900 chr2D 630683520 630686485 2965 True 2082.000 2841 97.5090 2546 4997 2 chr2D.!!$R3 2451
4 TraesCS6D01G194900 chr2D 36579723 36580398 675 True 1022.000 1022 94.0830 1 671 1 chr2D.!!$R1 670
5 TraesCS6D01G194900 chr2D 362290899 362291569 670 True 957.000 957 92.4440 1 671 1 chr2D.!!$R2 670
6 TraesCS6D01G194900 chr6B 423200279 423204584 4305 True 1013.400 1936 92.9954 668 4409 5 chr6B.!!$R2 3741
7 TraesCS6D01G194900 chr6B 4463084 4466789 3705 False 963.500 966 92.6450 1 668 2 chr6B.!!$F1 667
8 TraesCS6D01G194900 chr6B 423188509 423194366 5857 True 958.375 2774 91.0120 4405 9727 8 chr6B.!!$R1 5322
9 TraesCS6D01G194900 chr2A 734975287 734976659 1372 True 2117.000 2117 94.3770 6068 7461 1 chr2A.!!$R2 1393
10 TraesCS6D01G194900 chr3D 100469333 100469999 666 False 1038.000 1038 94.7760 1 668 1 chr3D.!!$F1 667
11 TraesCS6D01G194900 chr5D 133506757 133507424 667 False 1029.000 1029 94.4690 1 668 1 chr5D.!!$F1 667
12 TraesCS6D01G194900 chr4D 477373041 477373710 669 True 974.000 974 93.0060 3 668 1 chr4D.!!$R3 665
13 TraesCS6D01G194900 chr7D 133689182 133689853 671 False 966.000 966 92.7190 1 668 1 chr7D.!!$F1 667
14 TraesCS6D01G194900 chr7D 458370251 458370910 659 True 950.000 950 92.5260 1 668 1 chr7D.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 3935 0.097674 CTATTCACGCTGCCAAGTGC 59.902 55.000 0.00 0.0 37.44 4.40 F
1185 4577 0.178891 TTGCTGTCCTCCTCTTCCCT 60.179 55.000 0.00 0.0 0.00 4.20 F
1967 5796 0.251354 TTCTGAGCCTCAGCCATGAC 59.749 55.000 17.08 0.0 43.95 3.06 F
2591 6420 1.332997 GCTATGCCATCACACTTGAGC 59.667 52.381 0.00 0.0 34.35 4.26 F
3302 7662 8.898761 TGATTTAGTGGAATTAACGCATATGTT 58.101 29.630 4.29 0.0 35.86 2.71 F
3747 8108 0.182061 GAATGGGAGCCTCATCTGCA 59.818 55.000 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 5796 0.391793 GCCTCCAAGACTCCCTTTCG 60.392 60.000 0.00 0.0 31.42 3.46 R
2591 6420 5.286082 CGAAAAAGTTGAACTGACACAAAGG 59.714 40.000 0.00 0.0 0.00 3.11 R
3302 7662 0.179004 ACAATGCGACCACCCTTTCA 60.179 50.000 0.00 0.0 0.00 2.69 R
3747 8108 3.863142 AAAGGATACGACGCTGTAAGT 57.137 42.857 0.00 0.0 46.39 2.24 R
8689 13597 8.192068 TGCGAATGGTATTATAATGTTATCGG 57.808 34.615 8.28 0.0 0.00 4.18 R
8933 14007 1.402259 GAAAGAGGATGTCGAGCGAGA 59.598 52.381 0.00 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 3317 3.676605 TCGCCGCCAACGAGAAGA 61.677 61.111 0.00 0.00 43.93 2.87
313 3360 1.515020 CAGAGGAGGCGGAGAAGTG 59.485 63.158 0.00 0.00 0.00 3.16
326 3373 1.131504 GAGAAGTGCGTCGATCTCTGT 59.868 52.381 0.00 0.00 36.29 3.41
382 3429 2.028484 GACGACGTCCAGTTGCCA 59.972 61.111 17.25 0.00 37.78 4.92
497 3545 5.929697 ATGCGATGAACAATGTAGTATGG 57.070 39.130 0.00 0.00 0.00 2.74
524 3573 7.275888 TGAACTATGTTTGTGCAATTTCTCT 57.724 32.000 0.00 0.00 0.00 3.10
611 3662 3.564644 TGACCCGCAAAAAGATTTTCGTA 59.435 39.130 0.00 0.00 34.08 3.43
617 3668 4.740695 CGCAAAAAGATTTTCGTAAACCCA 59.259 37.500 0.00 0.00 31.81 4.51
624 3675 4.336153 AGATTTTCGTAAACCCACAAACGT 59.664 37.500 0.00 0.00 36.73 3.99
628 3679 3.525537 TCGTAAACCCACAAACGTGTTA 58.474 40.909 0.00 0.00 35.07 2.41
650 3701 1.020333 CGGGTCGTATTTTTGCGGGA 61.020 55.000 0.00 0.00 0.00 5.14
698 3749 1.067212 GGTAGCACTACGGATCACCTG 59.933 57.143 0.00 0.00 36.94 4.00
721 3772 0.817013 GGGGCGATGCAAATCTTCAA 59.183 50.000 0.00 0.00 0.00 2.69
731 3782 3.189080 TGCAAATCTTCAACATCGGACTG 59.811 43.478 0.00 0.00 0.00 3.51
753 3804 2.049063 ACGCGCTGTCCTCAAGAC 60.049 61.111 5.73 0.00 46.51 3.01
815 3866 2.362369 CCGGCTGATCCTGGAGTGT 61.362 63.158 1.52 0.00 32.51 3.55
848 3899 4.133373 ACCTAGCGCGTCCCCCTA 62.133 66.667 8.43 0.00 0.00 3.53
849 3900 3.296054 CCTAGCGCGTCCCCCTAG 61.296 72.222 8.43 9.32 0.00 3.02
850 3901 3.979739 CTAGCGCGTCCCCCTAGC 61.980 72.222 8.43 0.00 0.00 3.42
856 3907 2.044555 GCGTCCCCCTAGCCAAAAC 61.045 63.158 0.00 0.00 0.00 2.43
857 3908 1.743995 CGTCCCCCTAGCCAAAACG 60.744 63.158 0.00 0.00 0.00 3.60
878 3929 1.009829 CAACCTCTATTCACGCTGCC 58.990 55.000 0.00 0.00 0.00 4.85
881 3932 1.293924 CCTCTATTCACGCTGCCAAG 58.706 55.000 0.00 0.00 0.00 3.61
883 3934 1.662629 CTCTATTCACGCTGCCAAGTG 59.337 52.381 0.00 0.00 39.95 3.16
884 3935 0.097674 CTATTCACGCTGCCAAGTGC 59.902 55.000 0.00 0.00 37.44 4.40
948 4334 2.163390 CAGCGCACCGTCTCATCTG 61.163 63.158 11.47 0.00 0.00 2.90
979 4365 2.189499 CCCGCCCAGCTATTTCTGC 61.189 63.158 0.00 0.00 32.87 4.26
1185 4577 0.178891 TTGCTGTCCTCCTCTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
1296 4688 2.653702 GCGCTCTCCTCTGTGTGT 59.346 61.111 0.00 0.00 0.00 3.72
1676 5504 3.958798 AGCGCTGAGGTCCTAGTTTTATA 59.041 43.478 10.39 0.00 0.00 0.98
1789 5617 9.146984 TCAAGTACAGTAATCCACTTTAAATCG 57.853 33.333 0.00 0.00 34.26 3.34
1890 5719 8.697507 ATATAAAATTGGAGTTCTAGCCCTTG 57.302 34.615 0.00 0.00 0.00 3.61
1967 5796 0.251354 TTCTGAGCCTCAGCCATGAC 59.749 55.000 17.08 0.00 43.95 3.06
2591 6420 1.332997 GCTATGCCATCACACTTGAGC 59.667 52.381 0.00 0.00 34.35 4.26
3302 7662 8.898761 TGATTTAGTGGAATTAACGCATATGTT 58.101 29.630 4.29 0.00 35.86 2.71
3747 8108 0.182061 GAATGGGAGCCTCATCTGCA 59.818 55.000 0.00 0.00 0.00 4.41
3915 8282 8.735692 AATTATTTTCCCCATTATTTGCACAG 57.264 30.769 0.00 0.00 0.00 3.66
5730 10162 7.256012 GCATAAGCATAAAGTAGTACTCCCTCT 60.256 40.741 2.58 0.00 41.58 3.69
8689 13597 1.134371 CAGGGCACTACCTTCTAAGCC 60.134 57.143 0.00 0.00 39.34 4.35
8824 13845 6.255887 GTCGTGCTATAGAATTGCTTTAGTGT 59.744 38.462 3.21 0.00 32.61 3.55
8825 13846 7.434307 GTCGTGCTATAGAATTGCTTTAGTGTA 59.566 37.037 3.21 0.00 32.61 2.90
8826 13847 8.141909 TCGTGCTATAGAATTGCTTTAGTGTAT 58.858 33.333 3.21 0.00 32.61 2.29
8827 13848 8.765219 CGTGCTATAGAATTGCTTTAGTGTATT 58.235 33.333 3.21 0.00 32.61 1.89
9431 14703 4.722700 AGCCGGCTTCAATGCGGT 62.723 61.111 27.08 0.00 0.00 5.68
9471 14743 2.048222 CGGTCGCTGTGTCCACAT 60.048 61.111 0.00 0.00 41.01 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
300 3347 2.507324 GACGCACTTCTCCGCCTC 60.507 66.667 0.00 0.00 0.00 4.70
313 3360 0.040781 GGAGCTACAGAGATCGACGC 60.041 60.000 0.00 0.00 39.11 5.19
366 3413 2.279918 GTGGCAACTGGACGTCGT 60.280 61.111 9.92 0.00 37.61 4.34
369 3416 2.279918 GTCGTGGCAACTGGACGT 60.280 61.111 0.00 0.00 34.69 4.34
395 3442 0.106167 CTAGGGGGTCGGATCTGACA 60.106 60.000 30.85 13.07 40.72 3.58
458 3505 7.830739 TCATCGCATACTACATAGTTCATCAT 58.169 34.615 0.00 0.00 37.73 2.45
497 3545 7.092716 AGAAATTGCACAAACATAGTTCATCC 58.907 34.615 0.00 0.00 0.00 3.51
617 3668 0.869730 GACCCGCATAACACGTTTGT 59.130 50.000 0.00 0.00 37.67 2.83
624 3675 3.426426 GCAAAAATACGACCCGCATAACA 60.426 43.478 0.00 0.00 0.00 2.41
628 3679 0.098025 CGCAAAAATACGACCCGCAT 59.902 50.000 0.00 0.00 0.00 4.73
650 3701 3.630168 TCTCAGAGCAACTCTAGCAGAT 58.370 45.455 0.00 0.00 38.99 2.90
698 3749 2.828549 ATTTGCATCGCCCCGGTC 60.829 61.111 0.00 0.00 0.00 4.79
753 3804 1.376424 ATCCGTGTCAAGCAGCTGG 60.376 57.895 17.12 0.00 0.00 4.85
815 3866 2.499205 GTGTCATCCGGCCGATCA 59.501 61.111 30.73 14.67 0.00 2.92
850 3901 2.817258 TGAATAGAGGTTGCCGTTTTGG 59.183 45.455 0.00 0.00 42.50 3.28
852 3903 2.482721 CGTGAATAGAGGTTGCCGTTTT 59.517 45.455 0.00 0.00 0.00 2.43
856 3907 0.460284 AGCGTGAATAGAGGTTGCCG 60.460 55.000 0.00 0.00 0.00 5.69
857 3908 1.009829 CAGCGTGAATAGAGGTTGCC 58.990 55.000 0.00 0.00 0.00 4.52
878 3929 1.659794 CGGAAACCCTTGGCACTTG 59.340 57.895 0.00 0.00 0.00 3.16
881 3932 3.680786 GCCGGAAACCCTTGGCAC 61.681 66.667 5.05 0.00 46.76 5.01
884 3935 2.361230 GGAGCCGGAAACCCTTGG 60.361 66.667 5.05 0.00 0.00 3.61
931 4317 2.182791 CAGATGAGACGGTGCGCT 59.817 61.111 9.73 0.00 0.00 5.92
1164 4556 0.687354 GGAAGAGGAGGACAGCAACA 59.313 55.000 0.00 0.00 0.00 3.33
1296 4688 4.025858 GGTGCCTGCAGGAGAGCA 62.026 66.667 37.21 23.27 43.35 4.26
1696 5524 7.352739 ACATCGACAACAAATAGAAAGAACAC 58.647 34.615 0.00 0.00 0.00 3.32
1764 5592 8.932791 ACGATTTAAAGTGGATTACTGTACTTG 58.067 33.333 0.00 0.00 40.26 3.16
1789 5617 9.543783 CAGGTCTATAAAGGATTAAAGGTGTAC 57.456 37.037 0.00 0.00 0.00 2.90
1890 5719 1.748122 CCTGCTCTGTCATGGCCAC 60.748 63.158 8.16 0.00 0.00 5.01
1967 5796 0.391793 GCCTCCAAGACTCCCTTTCG 60.392 60.000 0.00 0.00 31.42 3.46
2591 6420 5.286082 CGAAAAAGTTGAACTGACACAAAGG 59.714 40.000 0.00 0.00 0.00 3.11
3302 7662 0.179004 ACAATGCGACCACCCTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
3331 7691 0.734309 TGCTATGTTGCTTCCATGCG 59.266 50.000 0.00 0.00 35.36 4.73
3427 7787 5.413523 TGGCCTCGGTTTCTACTTTTAAATC 59.586 40.000 3.32 0.00 0.00 2.17
3747 8108 3.863142 AAAGGATACGACGCTGTAAGT 57.137 42.857 0.00 0.00 46.39 2.24
3915 8282 9.239551 AGGACTTAAAATCCAAGTGGTAAATAC 57.760 33.333 7.91 0.00 38.86 1.89
8689 13597 8.192068 TGCGAATGGTATTATAATGTTATCGG 57.808 34.615 8.28 0.00 0.00 4.18
8840 13861 9.188588 GCTGCAGTATACACTAAATCGTTATTA 57.811 33.333 16.64 0.00 32.21 0.98
8841 13862 7.709182 TGCTGCAGTATACACTAAATCGTTATT 59.291 33.333 16.64 0.00 32.21 1.40
8842 13863 7.207383 TGCTGCAGTATACACTAAATCGTTAT 58.793 34.615 16.64 0.00 32.21 1.89
8843 13864 6.566141 TGCTGCAGTATACACTAAATCGTTA 58.434 36.000 16.64 0.00 32.21 3.18
8844 13865 5.416083 TGCTGCAGTATACACTAAATCGTT 58.584 37.500 16.64 0.00 32.21 3.85
8845 13866 5.006153 TGCTGCAGTATACACTAAATCGT 57.994 39.130 16.64 0.00 32.21 3.73
8846 13867 5.043903 ACTGCTGCAGTATACACTAAATCG 58.956 41.667 32.18 3.17 43.46 3.34
8933 14007 1.402259 GAAAGAGGATGTCGAGCGAGA 59.598 52.381 0.00 0.00 0.00 4.04
9045 14119 4.007644 TGGAGCCACGTGGAGCTG 62.008 66.667 38.30 11.79 40.11 4.24
9046 14120 4.008933 GTGGAGCCACGTGGAGCT 62.009 66.667 38.30 27.44 43.55 4.09
9212 14484 4.342378 CGGATCTTCAGGGTTCAGATCTTA 59.658 45.833 0.00 0.00 41.84 2.10
9373 14645 0.462047 GGCCGCGCCTATATAAGCAT 60.462 55.000 0.00 0.00 46.69 3.79
9431 14703 2.662596 CCTACTCCAGCCGTTGCA 59.337 61.111 0.00 0.00 41.13 4.08
9471 14743 1.826340 TAGGGACAGCGCTGCTTCAA 61.826 55.000 36.28 17.16 36.40 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.