AutoCloner

Multiple sequence alignment - TraesCS6D01G193600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G193600	chr6D	100.000	3665	0	0	1	3665	267730775	267727111	0.000000e+00	6769.0
1	TraesCS6D01G193600	chr6B	92.624	3037	133	38	549	3516	416102473	416099459	0.000000e+00	4283.0
2	TraesCS6D01G193600	chr6B	92.825	446	31	1	109	553	416103112	416102667	0.000000e+00	645.0
3	TraesCS6D01G193600	chr6A	94.300	1649	72	8	549	2194	381526808	381525179	0.000000e+00	2505.0
4	TraesCS6D01G193600	chr6A	89.927	1370	79	25	2299	3665	381524775	381523462	0.000000e+00	1711.0
5	TraesCS6D01G193600	chr6A	92.553	282	20	1	1	281	381527656	381527375	1.590000e-108	403.0
6	TraesCS6D01G193600	chr6A	91.636	275	19	3	280	553	381527275	381527004	9.610000e-101	377.0
7	TraesCS6D01G193600	chr2A	90.667	225	21	0	1	225	361375210	361374986	2.140000e-77	300.0
8	TraesCS6D01G193600	chr7D	90.308	227	22	0	1	227	195655691	195655917	7.690000e-77	298.0
9	TraesCS6D01G193600	chr7D	88.797	241	25	2	1	240	242480149	242480388	9.950000e-76	294.0
10	TraesCS6D01G193600	chr4D	90.308	227	22	0	1	227	434095336	434095562	7.690000e-77	298.0
11	TraesCS6D01G193600	chr4D	92.000	125	10	0	3541	3665	82520400	82520276	3.760000e-40	176.0
12	TraesCS6D01G193600	chr4D	76.349	241	41	13	550	782	98016141	98015909	8.320000e-22	115.0
13	TraesCS6D01G193600	chr4D	94.000	50	3	0	1376	1425	403182525	403182574	3.920000e-10	76.8
14	TraesCS6D01G193600	chr4D	78.899	109	14	8	1320	1425	494877439	494877541	8.500000e-07	65.8
15	TraesCS6D01G193600	chr1D	90.351	228	21	1	1	227	109275446	109275673	7.690000e-77	298.0
16	TraesCS6D01G193600	chr1D	91.803	122	10	0	3544	3665	91014042	91014163	1.750000e-38	171.0
17	TraesCS6D01G193600	chr7A	89.912	228	21	2	1	227	310192951	310193177	3.580000e-75	292.0
18	TraesCS6D01G193600	chr2D	88.333	240	28	0	1	240	334350747	334350986	4.630000e-74	289.0
19	TraesCS6D01G193600	chr5A	82.018	228	36	4	549	774	689159411	689159635	4.830000e-44	189.0
20	TraesCS6D01G193600	chr5A	72.055	365	69	30	1320	1669	674576481	674576827	1.090000e-10	78.7
21	TraesCS6D01G193600	chr5D	81.172	239	39	5	549	785	399247086	399246852	1.740000e-43	187.0
22	TraesCS6D01G193600	chr5D	94.595	111	6	0	3555	3665	456578923	456578813	4.870000e-39	172.0
23	TraesCS6D01G193600	chr1A	92.241	116	9	0	3550	3665	347328234	347328119	8.140000e-37	165.0
24	TraesCS6D01G193600	chr3B	92.174	115	9	0	3551	3665	642863830	642863944	2.930000e-36	163.0
25	TraesCS6D01G193600	chr3B	87.288	118	15	0	3544	3661	771667299	771667416	6.380000e-28	135.0
26	TraesCS6D01G193600	chr3D	92.453	106	8	0	3558	3663	559133314	559133209	6.340000e-33	152.0
27	TraesCS6D01G193600	chr5B	90.991	111	10	0	3555	3665	641802131	641802021	2.280000e-32	150.0
28	TraesCS6D01G193600	chr5B	89.908	109	11	0	3555	3663	369688784	369688892	1.370000e-29	141.0
29	TraesCS6D01G193600	chr1B	88.060	67	7	1	554	619	45482476	45482542	1.090000e-10	78.7
30	TraesCS6D01G193600	chr1B	88.060	67	7	1	554	619	45542846	45542912	1.090000e-10	78.7
31	TraesCS6D01G193600	chr1B	88.060	67	7	1	554	619	45600125	45600191	1.090000e-10	78.7
32	TraesCS6D01G193600	chr1B	88.060	67	7	1	554	619	45624823	45624889	1.090000e-10	78.7
33	TraesCS6D01G193600	chr4B	100.000	41	0	0	1385	1425	500053200	500053240	3.920000e-10	76.8
34	TraesCS6D01G193600	chr4B	89.796	49	3	2	1379	1426	634981586	634981633	1.100000e-05	62.1
35	TraesCS6D01G193600	chr4A	94.000	50	3	0	1376	1425	60730865	60730914	3.920000e-10	76.8
36	TraesCS6D01G193600	chr4A	76.282	156	29	7	1274	1425	60880236	60880387	3.920000e-10	76.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G193600	chr6D	267727111	267730775	3664	True	6769	6769	100.0000	1	3665	1	chr6D.!!$R1	3664
1	TraesCS6D01G193600	chr6B	416099459	416103112	3653	True	2464	4283	92.7245	109	3516	2	chr6B.!!$R1	3407
2	TraesCS6D01G193600	chr6A	381523462	381527656	4194	True	1249	2505	92.1040	1	3665	4	chr6A.!!$R1	3664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
504	607	0.757188	ACCCATTGCGGTTCCAAACA	60.757	50.000	0.00	0.0	29.19	2.83	F
991	1298	1.007271	CTCTCACTCACACGCGGTT	60.007	57.895	12.47	0.0	0.00	4.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2052	2359	0.323542	AGTCCATCTTCCCGACGTCT	60.324	55.0	14.70	0.0	0.00	4.18	R
2674	3294	0.037975	GTTCAAAGCAGGGCATGGTG	60.038	55.0	4.01	0.0	40.26	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	7.532130	TCATGTCTATGGTTGGGAAACCTTAAT	60.532	37.037	8.95	0.00	42.41	1.40
68	69	6.037786	TCATCTTTGATCAACGACCTAGTT	57.962	37.500	16.07	0.00	34.15	2.24
69	70	6.100004	TCATCTTTGATCAACGACCTAGTTC	58.900	40.000	16.07	0.00	30.96	3.01
71	72	5.849510	TCTTTGATCAACGACCTAGTTCAA	58.150	37.500	7.89	0.00	30.96	2.69
76	77	7.165460	TGATCAACGACCTAGTTCAATAGAA	57.835	36.000	0.00	0.00	30.96	2.10
91	92	7.345914	AGTTCAATAGAAGCTTACTAGGGACAT	59.654	37.037	0.00	0.00	33.63	3.06
92	93	7.055667	TCAATAGAAGCTTACTAGGGACATG	57.944	40.000	0.00	0.00	0.00	3.21
95	96	3.452627	AGAAGCTTACTAGGGACATGGTG	59.547	47.826	0.00	0.00	0.00	4.17
191	192	8.690203	TCATGAACGGGAAATATGACAATAAT	57.310	30.769	0.00	0.00	0.00	1.28
192	193	9.130661	TCATGAACGGGAAATATGACAATAATT	57.869	29.630	0.00	0.00	0.00	1.40
215	216	5.959618	ATTTTATTATTGCGTCTAGGGCC	57.040	39.130	0.00	0.00	0.00	5.80
260	262	3.561725	GCTTATTAGCCGATGCAGTTTCT	59.438	43.478	0.00	0.00	41.74	2.52
269	271	2.410262	CGATGCAGTTTCTGTTGTCGTC	60.410	50.000	0.00	0.00	33.43	4.20
311	414	6.115446	TCAAGTGGATATTGAGAATCGCTTT	58.885	36.000	0.00	0.00	38.61	3.51
374	477	2.231478	AGTCACCCGTGTAGTCATCAAG	59.769	50.000	0.00	0.00	0.00	3.02
409	512	1.367471	CTCAGTGGAGCGACACCAA	59.633	57.895	9.71	0.00	42.28	3.67
504	607	0.757188	ACCCATTGCGGTTCCAAACA	60.757	50.000	0.00	0.00	29.19	2.83
508	611	2.029110	CCATTGCGGTTCCAAACATCTT	60.029	45.455	0.00	0.00	0.00	2.40
645	949	7.197071	ACGTGTACTTTGAATTTTGCATCTA	57.803	32.000	0.00	0.00	0.00	1.98
697	1001	5.856126	TGTGAACATCCGTAATTGTCTTC	57.144	39.130	0.00	0.00	0.00	2.87
836	1141	5.099575	GGTCACAAACACGATTCAAAACTT	58.900	37.500	0.00	0.00	0.00	2.66
841	1146	7.855409	TCACAAACACGATTCAAAACTTATCTG	59.145	33.333	0.00	0.00	0.00	2.90
852	1157	7.681939	TCAAAACTTATCTGGAATGTACACC	57.318	36.000	0.00	0.00	0.00	4.16
958	1263	3.637229	AGCAGCGTATACCTAACACATCT	59.363	43.478	0.00	0.00	0.00	2.90
964	1269	4.902448	CGTATACCTAACACATCTTCGTCG	59.098	45.833	0.00	0.00	0.00	5.12
965	1270	4.978083	ATACCTAACACATCTTCGTCGT	57.022	40.909	0.00	0.00	0.00	4.34
984	1291	1.878088	GTCACCGTACTCTCACTCACA	59.122	52.381	0.00	0.00	0.00	3.58
991	1298	1.007271	CTCTCACTCACACGCGGTT	60.007	57.895	12.47	0.00	0.00	4.44
992	1299	1.278172	CTCTCACTCACACGCGGTTG	61.278	60.000	12.47	7.01	0.00	3.77
1021	1328	3.751246	CGGGTAGGGCGTTCGTGA	61.751	66.667	0.00	0.00	0.00	4.35
1341	1648	3.435890	CCAACTTCTCCAACTACCCCAAA	60.436	47.826	0.00	0.00	0.00	3.28
1483	1790	2.203788	AGTTCTCGGCCAGGACCA	60.204	61.111	2.24	0.00	0.00	4.02
2281	2588	4.473520	AGCGGTGGATGAAGGGCG	62.474	66.667	0.00	0.00	0.00	6.13
2286	2593	3.407967	TGGATGAAGGGCGGGGAC	61.408	66.667	0.00	0.00	0.00	4.46
2570	3176	4.248859	CATCAACTTTCAGTCCATCTCGT	58.751	43.478	0.00	0.00	0.00	4.18
2669	3289	1.825090	ACAGCGCAAGAATGATGGAA	58.175	45.000	11.47	0.00	43.02	3.53
2670	3290	2.161855	ACAGCGCAAGAATGATGGAAA	58.838	42.857	11.47	0.00	43.02	3.13
2671	3291	2.163010	ACAGCGCAAGAATGATGGAAAG	59.837	45.455	11.47	0.00	43.02	2.62
2672	3292	1.133790	AGCGCAAGAATGATGGAAAGC	59.866	47.619	11.47	0.00	43.02	3.51
2673	3293	1.133790	GCGCAAGAATGATGGAAAGCT	59.866	47.619	0.30	0.00	43.02	3.74
2674	3294	2.793933	GCGCAAGAATGATGGAAAGCTC	60.794	50.000	0.30	0.00	43.02	4.09
2675	3295	2.421073	CGCAAGAATGATGGAAAGCTCA	59.579	45.455	0.00	0.00	43.02	4.26
2676	3296	3.730061	CGCAAGAATGATGGAAAGCTCAC	60.730	47.826	0.00	0.00	43.02	3.51
2704	3324	4.338118	CCCTGCTTTGAACAGAAGTAAACA	59.662	41.667	0.00	0.00	37.32	2.83
2771	3397	3.261580	CAGGCAATGTGATCAAGACGTA	58.738	45.455	0.00	0.00	0.00	3.57
2904	3562	0.109781	GCGTTGTGCATTCCGTCAAT	60.110	50.000	0.00	0.00	45.45	2.57
2906	3564	2.660490	CGTTGTGCATTCCGTCAATTT	58.340	42.857	0.00	0.00	0.00	1.82
2959	3617	5.289917	TGTTGTTATACATGAGTTTGGCG	57.710	39.130	0.00	0.00	0.00	5.69
3001	3659	9.489084	TGGAATTCGATTTGATTTCGATATACT	57.511	29.630	0.00	0.00	44.32	2.12
3036	3694	4.695928	GCTCGGGGTGAAGAATTATAATCC	59.304	45.833	0.00	0.00	0.00	3.01
3161	3834	4.907188	TGACGCATAAAATTACGAACGT	57.093	36.364	5.03	5.03	34.85	3.99
3249	3922	3.126831	TGCGCCAAATTTTACAAAGTGG	58.873	40.909	4.18	0.00	0.00	4.00
3383	4056	8.677300	TGAAAATGAGGCAATAACATCTTAGTC	58.323	33.333	0.00	0.00	0.00	2.59
3473	4146	5.413213	TGACCAATAACATAACCAGTTTCCG	59.587	40.000	0.00	0.00	0.00	4.30
3475	4148	6.474630	ACCAATAACATAACCAGTTTCCGTA	58.525	36.000	0.00	0.00	0.00	4.02
3521	4201	2.724273	GCATTGAATTGCCCCCGCT	61.724	57.895	0.00	0.00	36.60	5.52
3533	4213	4.101448	CCCGCTCCCCCTTGTCAG	62.101	72.222	0.00	0.00	0.00	3.51
3534	4214	4.101448	CCGCTCCCCCTTGTCAGG	62.101	72.222	0.00	0.00	40.45	3.86
3551	4231	3.098555	GGCATACAAGCCGGTTCG	58.901	61.111	1.90	0.00	46.12	3.95
3552	4232	1.448893	GGCATACAAGCCGGTTCGA	60.449	57.895	1.90	0.00	46.12	3.71
3553	4233	0.814010	GGCATACAAGCCGGTTCGAT	60.814	55.000	1.90	0.00	46.12	3.59
3556	4236	0.179056	ATACAAGCCGGTTCGATGGG	60.179	55.000	1.90	0.00	0.00	4.00
3582	4262	1.748879	GCCAGCTTGTATGCCGGAA	60.749	57.895	5.05	0.00	32.49	4.30
3587	4267	1.812571	AGCTTGTATGCCGGAAAACTG	59.187	47.619	5.05	0.00	0.00	3.16
3593	4273	1.168714	ATGCCGGAAAACTGCTCTTC	58.831	50.000	5.05	0.00	0.00	2.87
3595	4275	1.912371	GCCGGAAAACTGCTCTTCGG	61.912	60.000	5.05	0.00	0.00	4.30
3603	4283	0.107945	ACTGCTCTTCGGAAGCCATC	60.108	55.000	12.90	2.83	0.00	3.51
3605	4285	1.141881	GCTCTTCGGAAGCCATCGA	59.858	57.895	12.90	0.00	0.00	3.59
3621	4301	1.257743	TCGAAAGAGTGGTGGAGGAG	58.742	55.000	0.00	0.00	34.84	3.69
3636	4316	2.812619	GGAGGAGATTGGGGGAGCG	61.813	68.421	0.00	0.00	0.00	5.03
3638	4318	4.570874	GGAGATTGGGGGAGCGGC	62.571	72.222	0.00	0.00	0.00	6.53
3661	4341	2.983592	GGTGTGGTTCTTGCCCGG	60.984	66.667	0.00	0.00	0.00	5.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	7.645058	TGATCAAAGATGATTAAGGTTTCCC	57.355	36.000	0.00	0.00	46.30	3.97
45	46	5.661056	ACTAGGTCGTTGATCAAAGATGA	57.339	39.130	23.84	12.87	40.57	2.92
68	69	6.042093	CCATGTCCCTAGTAAGCTTCTATTGA	59.958	42.308	0.00	2.10	0.00	2.57
69	70	6.183361	ACCATGTCCCTAGTAAGCTTCTATTG	60.183	42.308	0.00	0.00	0.00	1.90
71	72	5.305644	CACCATGTCCCTAGTAAGCTTCTAT	59.694	44.000	0.00	0.00	0.00	1.98
76	77	2.834113	ACACCATGTCCCTAGTAAGCT	58.166	47.619	0.00	0.00	0.00	3.74
91	92	4.884164	TGTGTGAATACATTGACAACACCA	59.116	37.500	0.00	0.00	35.74	4.17
92	93	5.431420	TGTGTGAATACATTGACAACACC	57.569	39.130	0.00	0.00	35.74	4.16
191	192	7.228590	AGGCCCTAGACGCAATAATAAAATAA	58.771	34.615	0.00	0.00	0.00	1.40
192	193	6.775708	AGGCCCTAGACGCAATAATAAAATA	58.224	36.000	0.00	0.00	0.00	1.40
206	207	3.054655	TGTGTTGGAAATAGGCCCTAGAC	60.055	47.826	0.00	0.00	0.00	2.59
215	216	6.875195	AGCAATTTGGAATGTGTTGGAAATAG	59.125	34.615	0.00	0.00	0.00	1.73
260	262	2.168496	CTAGAGGAAGGGACGACAACA	58.832	52.381	0.00	0.00	0.00	3.33
269	271	4.714308	ACTTGAATCTGACTAGAGGAAGGG	59.286	45.833	0.00	0.00	36.14	3.95
311	414	5.344884	GTGAAATTTTTCTTCAACCGGACA	58.655	37.500	9.46	0.00	38.02	4.02
374	477	1.336887	TGAGCAAAGTGTCGGAGCTAC	60.337	52.381	0.00	0.00	35.36	3.58
405	508	3.682718	CGTCAGCTATGGGAAGAATTGGT	60.683	47.826	0.00	0.00	0.00	3.67
409	512	3.034635	AGTCGTCAGCTATGGGAAGAAT	58.965	45.455	0.00	0.00	0.00	2.40
504	607	2.149578	GCTCCGCTGCATATTCAAGAT	58.850	47.619	0.00	0.00	0.00	2.40
508	611	1.971481	ATTGCTCCGCTGCATATTCA	58.029	45.000	0.00	0.00	42.96	2.57
534	637	1.332144	ACCTACGCCCGCCAAGAATA	61.332	55.000	0.00	0.00	0.00	1.75
613	917	9.878599	CAAAATTCAAAGTACACGTAGAGAAAT	57.121	29.630	0.00	0.00	0.00	2.17
668	972	2.512485	ACGGATGTTCACAACGTACA	57.488	45.000	10.25	0.00	40.14	2.90
730	1034	4.746535	TGCTCCCGTGATACTAATTTGA	57.253	40.909	0.00	0.00	0.00	2.69
836	1141	5.104569	TGCTTCATGGTGTACATTCCAGATA	60.105	40.000	10.63	0.00	37.84	1.98
841	1146	2.095853	CGTGCTTCATGGTGTACATTCC	59.904	50.000	0.00	0.00	37.84	3.01
852	1157	2.562912	GTGTGGGCGTGCTTCATG	59.437	61.111	0.00	0.00	0.00	3.07
964	1269	1.878088	TGTGAGTGAGAGTACGGTGAC	59.122	52.381	0.00	0.00	0.00	3.67
965	1270	1.878088	GTGTGAGTGAGAGTACGGTGA	59.122	52.381	0.00	0.00	0.00	4.02
1341	1648	4.133373	TCGCGGTAGTAGGGCCCT	62.133	66.667	31.35	31.35	0.00	5.19
1437	1744	2.186384	GCCGAGTGCATCTCAGCT	59.814	61.111	13.79	0.00	41.76	4.24
2052	2359	0.323542	AGTCCATCTTCCCGACGTCT	60.324	55.000	14.70	0.00	0.00	4.18
2238	2545	1.599576	GAACTCCAGGCAGTCCTCC	59.400	63.158	0.00	0.00	41.93	4.30
2244	2551	4.785453	GGGCGGAACTCCAGGCAG	62.785	72.222	13.27	0.00	32.84	4.85
2570	3176	2.025793	TCAGTTTGTTTGGGTGGTCAGA	60.026	45.455	0.00	0.00	0.00	3.27
2642	3255	0.250684	TTCTTGCGCTGTTCCATCCA	60.251	50.000	9.73	0.00	0.00	3.41
2669	3289	2.362120	GCAGGGCATGGTGAGCTT	60.362	61.111	0.00	0.00	0.00	3.74
2670	3290	2.436596	AAAGCAGGGCATGGTGAGCT	62.437	55.000	4.01	0.00	40.26	4.09
2671	3291	1.980772	AAAGCAGGGCATGGTGAGC	60.981	57.895	4.01	0.00	40.26	4.26
2672	3292	0.609957	TCAAAGCAGGGCATGGTGAG	60.610	55.000	4.01	0.41	40.26	3.51
2673	3293	0.178967	TTCAAAGCAGGGCATGGTGA	60.179	50.000	4.01	0.00	40.26	4.02
2674	3294	0.037975	GTTCAAAGCAGGGCATGGTG	60.038	55.000	4.01	0.00	40.26	4.17
2675	3295	0.469705	TGTTCAAAGCAGGGCATGGT	60.470	50.000	0.00	0.00	42.89	3.55
2676	3296	0.245539	CTGTTCAAAGCAGGGCATGG	59.754	55.000	0.00	0.00	0.00	3.66
2704	3324	9.152327	TCAGAGATCTGTATCACATTCCTTTAT	57.848	33.333	0.00	0.00	44.12	1.40
2771	3397	5.296283	AGCAGTAATTATACACTCGTCTCGT	59.704	40.000	0.00	0.00	34.29	4.18
2993	3651	5.058613	CGAGCGATGAAAAGTCAGTATATCG	59.941	44.000	0.00	0.00	37.14	2.92
3001	3659	0.391130	CCCCGAGCGATGAAAAGTCA	60.391	55.000	0.00	0.00	38.41	3.41
3249	3922	9.988350	ATACAAATAGTCACGTTCAAATTGATC	57.012	29.630	0.00	0.00	0.00	2.92
3286	3959	5.520022	TCTTACGGCGTTTCATTAAGAAC	57.480	39.130	21.24	0.00	35.56	3.01
3340	4013	7.490840	TCATTTTCAAATTGTCTCAGCTTTGA	58.509	30.769	0.00	0.00	36.21	2.69
3492	4172	3.928375	GCAATTCAATGCCTACTTTGTGG	59.072	43.478	0.00	0.00	40.49	4.17
3527	4207	3.264574	GGCTTGTATGCCCTGACAA	57.735	52.632	0.00	0.00	46.82	3.18
3535	4215	0.304705	CATCGAACCGGCTTGTATGC	59.695	55.000	0.00	0.00	0.00	3.14
3536	4216	0.937304	CCATCGAACCGGCTTGTATG	59.063	55.000	0.00	0.00	0.00	2.39
3537	4217	0.179056	CCCATCGAACCGGCTTGTAT	60.179	55.000	0.00	0.00	0.00	2.29
3538	4218	1.219664	CCCATCGAACCGGCTTGTA	59.780	57.895	0.00	0.00	0.00	2.41
3540	4220	3.508840	GCCCATCGAACCGGCTTG	61.509	66.667	0.00	0.00	39.70	4.01
3541	4221	4.796495	GGCCCATCGAACCGGCTT	62.796	66.667	17.24	0.00	42.58	4.35
3556	4236	2.843912	ATACAAGCTGGCTGGGTGGC	62.844	60.000	1.86	0.00	42.18	5.01
3559	4239	1.379044	GCATACAAGCTGGCTGGGT	60.379	57.895	1.86	4.05	0.00	4.51
3562	4242	3.104766	CGGCATACAAGCTGGCTG	58.895	61.111	0.00	0.00	37.24	4.85
3567	4247	1.812571	CAGTTTTCCGGCATACAAGCT	59.187	47.619	0.00	0.00	34.17	3.74
3582	4262	0.108585	TGGCTTCCGAAGAGCAGTTT	59.891	50.000	12.54	0.00	41.89	2.66
3587	4267	0.460284	TTCGATGGCTTCCGAAGAGC	60.460	55.000	12.54	0.00	39.49	4.09
3593	4273	1.002366	CACTCTTTCGATGGCTTCCG	58.998	55.000	0.00	0.00	0.00	4.30
3595	4275	1.734465	CACCACTCTTTCGATGGCTTC	59.266	52.381	1.84	0.00	36.96	3.86
3603	4283	0.247736	CCTCCTCCACCACTCTTTCG	59.752	60.000	0.00	0.00	0.00	3.46
3605	4285	1.150135	TCTCCTCCTCCACCACTCTTT	59.850	52.381	0.00	0.00	0.00	2.52
3610	4290	0.543749	CCAATCTCCTCCTCCACCAC	59.456	60.000	0.00	0.00	0.00	4.16
3621	4301	4.570874	GCCGCTCCCCCAATCTCC	62.571	72.222	0.00	0.00	0.00	3.71
3638	4318	1.959226	CAAGAACCACACCCGTCCG	60.959	63.158	0.00	0.00	0.00	4.79
3642	4322	2.983592	GGGCAAGAACCACACCCG	60.984	66.667	0.00	0.00	0.00	5.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.