Multiple sequence alignment - TraesCS6D01G193300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G193300 chr6D 100.000 4981 0 0 1 4981 267520817 267515837 0.000000e+00 9199.0
1 TraesCS6D01G193300 chr6D 92.523 107 8 0 1486 1592 21035635 21035529 2.400000e-33 154.0
2 TraesCS6D01G193300 chr6D 81.651 109 14 5 3451 3556 315597954 315597849 8.880000e-13 86.1
3 TraesCS6D01G193300 chr6A 92.060 4282 221 51 35 4239 381035612 381031373 0.000000e+00 5914.0
4 TraesCS6D01G193300 chr6A 93.028 459 15 5 4528 4981 381027251 381026805 0.000000e+00 654.0
5 TraesCS6D01G193300 chr6A 92.308 299 13 4 3944 4236 381030835 381030541 2.770000e-112 416.0
6 TraesCS6D01G193300 chr6A 90.751 173 14 2 1486 1657 42133481 42133310 3.880000e-56 230.0
7 TraesCS6D01G193300 chr6A 94.805 77 4 0 3944 4020 381031333 381031257 2.440000e-23 121.0
8 TraesCS6D01G193300 chr6A 81.651 109 14 5 3451 3556 452637917 452637812 8.880000e-13 86.1
9 TraesCS6D01G193300 chr6A 100.000 30 0 0 33 62 381080034 381080005 6.970000e-04 56.5
10 TraesCS6D01G193300 chr6B 91.275 3805 182 80 1123 4844 415868649 415864912 0.000000e+00 5049.0
11 TraesCS6D01G193300 chr6B 92.409 606 21 2 524 1112 415869575 415868978 0.000000e+00 841.0
12 TraesCS6D01G193300 chr6B 91.414 396 31 2 111 503 415869954 415869559 1.580000e-149 540.0
13 TraesCS6D01G193300 chr6B 93.103 87 4 2 4894 4979 415864903 415864818 5.230000e-25 126.0
14 TraesCS6D01G193300 chr6B 81.481 108 13 6 3453 3556 511701434 511701538 1.150000e-11 82.4
15 TraesCS6D01G193300 chr1D 88.854 628 46 10 1945 2563 453793077 453793689 0.000000e+00 750.0
16 TraesCS6D01G193300 chr1D 92.523 107 8 0 1486 1592 444141877 444141771 2.400000e-33 154.0
17 TraesCS6D01G193300 chr1B 91.791 402 16 8 2175 2563 624085088 624085485 1.220000e-150 544.0
18 TraesCS6D01G193300 chr1B 87.597 258 24 7 1938 2193 624084819 624085070 4.880000e-75 292.0
19 TraesCS6D01G193300 chr1A 90.421 261 12 5 2303 2563 548529297 548529544 1.030000e-86 331.0
20 TraesCS6D01G193300 chr1A 90.751 173 14 2 1486 1657 7851827 7851998 3.880000e-56 230.0
21 TraesCS6D01G193300 chr4D 91.908 173 12 2 1486 1657 260438047 260437876 1.790000e-59 241.0
22 TraesCS6D01G193300 chr3A 91.329 173 13 2 1486 1657 750275072 750274901 8.340000e-58 235.0
23 TraesCS6D01G193300 chr5A 90.751 173 14 2 1486 1657 525732151 525731980 3.880000e-56 230.0
24 TraesCS6D01G193300 chr5A 93.651 63 4 0 2437 2499 569548287 569548225 1.480000e-15 95.3
25 TraesCS6D01G193300 chr4B 89.017 173 17 2 1486 1657 21918210 21918039 3.910000e-51 213.0
26 TraesCS6D01G193300 chr7D 92.523 107 8 0 1486 1592 5462310 5462204 2.400000e-33 154.0
27 TraesCS6D01G193300 chr5B 94.030 67 4 0 2437 2503 550228014 550227948 8.820000e-18 102.0
28 TraesCS6D01G193300 chr5D 92.537 67 5 0 2437 2503 450208435 450208369 4.100000e-16 97.1
29 TraesCS6D01G193300 chr4A 93.878 49 1 2 4703 4750 640218868 640218915 6.920000e-09 73.1
30 TraesCS6D01G193300 chr2D 97.143 35 1 0 1 35 323100842 323100808 5.380000e-05 60.2
31 TraesCS6D01G193300 chr2D 94.286 35 2 0 1 35 117250438 117250472 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G193300 chr6D 267515837 267520817 4980 True 9199.00 9199 100.00000 1 4981 1 chr6D.!!$R2 4980
1 TraesCS6D01G193300 chr6A 381026805 381035612 8807 True 1776.25 5914 93.05025 35 4981 4 chr6A.!!$R4 4946
2 TraesCS6D01G193300 chr6B 415864818 415869954 5136 True 1639.00 5049 92.05025 111 4979 4 chr6B.!!$R1 4868
3 TraesCS6D01G193300 chr1D 453793077 453793689 612 False 750.00 750 88.85400 1945 2563 1 chr1D.!!$F1 618
4 TraesCS6D01G193300 chr1B 624084819 624085485 666 False 418.00 544 89.69400 1938 2563 2 chr1B.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 307 0.109723 TTAGAAGCCCAAACCGCAGT 59.890 50.000 0.00 0.00 0.00 4.40 F
1107 1155 0.105349 TTCCTCAGGTATACCCCCGG 60.105 60.000 18.65 15.08 36.42 5.73 F
1320 1706 0.380378 CGTGGGTTGGCCGAATTATG 59.620 55.000 0.00 0.00 34.97 1.90 F
1427 1815 0.823356 ACGAGGGTTTGCATGCTGTT 60.823 50.000 20.33 0.00 0.00 3.16 F
1617 2019 0.901580 CCTCCAGTTTTGGCCATGCT 60.902 55.000 6.09 1.72 44.63 3.79 F
3256 3726 1.075659 AGTGCAAAGGCTCTTCCCC 59.924 57.895 0.00 0.00 40.78 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 1797 0.109597 GAACAGCATGCAAACCCTCG 60.110 55.000 21.98 0.0 42.53 4.63 R
2980 3449 2.656947 AACTGCAAGGCCAAGTTAGA 57.343 45.000 5.01 0.0 39.30 2.10 R
3299 3769 0.834612 TCCAAGTCCTGAACAACCGT 59.165 50.000 0.00 0.0 0.00 4.83 R
3300 3770 1.806542 CATCCAAGTCCTGAACAACCG 59.193 52.381 0.00 0.0 0.00 4.44 R
3559 4033 2.168521 ACACTGGTATGGATCAAGGACG 59.831 50.000 0.00 0.0 0.00 4.79 R
4624 8960 2.158445 AGAGGTCCGAGGCATACATAGT 60.158 50.000 0.00 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.311486 CTCTCTCAACGCTTTTCTCCT 57.689 47.619 0.00 0.00 0.00 3.69
21 22 4.442375 CTCTCTCAACGCTTTTCTCCTA 57.558 45.455 0.00 0.00 0.00 2.94
22 23 4.420168 CTCTCTCAACGCTTTTCTCCTAG 58.580 47.826 0.00 0.00 0.00 3.02
23 24 2.926838 CTCTCAACGCTTTTCTCCTAGC 59.073 50.000 0.00 0.00 0.00 3.42
24 25 2.003301 CTCAACGCTTTTCTCCTAGCC 58.997 52.381 0.00 0.00 33.86 3.93
25 26 0.721718 CAACGCTTTTCTCCTAGCCG 59.278 55.000 0.00 0.00 33.86 5.52
26 27 0.391263 AACGCTTTTCTCCTAGCCGG 60.391 55.000 0.00 0.00 33.86 6.13
27 28 1.255667 ACGCTTTTCTCCTAGCCGGA 61.256 55.000 5.05 0.00 40.30 5.14
28 29 0.806492 CGCTTTTCTCCTAGCCGGAC 60.806 60.000 5.05 0.00 36.69 4.79
29 30 0.537653 GCTTTTCTCCTAGCCGGACT 59.462 55.000 5.05 4.30 36.69 3.85
30 31 1.471851 GCTTTTCTCCTAGCCGGACTC 60.472 57.143 5.05 0.00 36.69 3.36
31 32 2.104170 CTTTTCTCCTAGCCGGACTCT 58.896 52.381 5.05 0.00 36.69 3.24
32 33 2.233305 TTTCTCCTAGCCGGACTCTT 57.767 50.000 5.05 0.00 36.69 2.85
33 34 1.765230 TTCTCCTAGCCGGACTCTTC 58.235 55.000 5.05 0.00 36.69 2.87
55 56 8.485392 TCTTCACATGTGTGGATATAAATCTCA 58.515 33.333 24.63 0.00 45.65 3.27
76 77 7.050377 TCTCATTGTGTGGAGAAGATATTTCC 58.950 38.462 0.00 0.00 37.23 3.13
91 92 3.589654 TTCCGTCTCTTGCTGGCGG 62.590 63.158 0.00 0.00 43.32 6.13
120 123 0.250513 GATGACGGGGTCTCTTGCTT 59.749 55.000 0.00 0.00 33.15 3.91
156 176 2.093181 TGGGGAATCCGATAATATGCCG 60.093 50.000 0.00 0.00 38.76 5.69
159 179 2.351726 GGAATCCGATAATATGCCGTGC 59.648 50.000 0.00 0.00 0.00 5.34
195 215 6.515035 GCCGAATATTCCTTTTCATAACCCAG 60.515 42.308 9.87 0.00 0.00 4.45
205 225 2.265367 TCATAACCCAGCTCCAACTCA 58.735 47.619 0.00 0.00 0.00 3.41
234 254 5.395646 AAAACCATACCGAGGGGTTTCGT 62.396 47.826 12.31 0.00 42.84 3.85
287 307 0.109723 TTAGAAGCCCAAACCGCAGT 59.890 50.000 0.00 0.00 0.00 4.40
296 316 3.119280 GCCCAAACCGCAGTTATATGTTT 60.119 43.478 0.00 0.00 34.19 2.83
297 317 4.619628 GCCCAAACCGCAGTTATATGTTTT 60.620 41.667 0.00 0.00 34.19 2.43
303 323 8.707839 CAAACCGCAGTTATATGTTTTCAATTT 58.292 29.630 0.00 0.00 34.19 1.82
335 355 1.672145 GCGTTCTGGAAGGTAGTCACC 60.672 57.143 5.20 0.00 46.19 4.02
362 382 3.221222 GCCATCGTAGCCTCTGGT 58.779 61.111 0.00 0.00 0.00 4.00
380 400 2.903135 TGGTCCACATGTCATACTCACA 59.097 45.455 0.00 0.00 0.00 3.58
510 541 2.104111 ACGGAAGGAAACAGTGATGTCA 59.896 45.455 0.00 0.00 0.00 3.58
511 542 3.138304 CGGAAGGAAACAGTGATGTCAA 58.862 45.455 0.00 0.00 0.00 3.18
515 546 5.979517 GGAAGGAAACAGTGATGTCAAAAAG 59.020 40.000 0.00 0.00 0.00 2.27
517 548 6.773976 AGGAAACAGTGATGTCAAAAAGAA 57.226 33.333 0.00 0.00 0.00 2.52
719 750 2.260434 CGTCTACCACACCCACCG 59.740 66.667 0.00 0.00 0.00 4.94
934 965 2.503943 CGGAATTCGTTCCTTCGTTG 57.496 50.000 0.00 0.00 38.96 4.10
936 967 1.804748 GGAATTCGTTCCTTCGTTGCT 59.195 47.619 0.00 0.00 38.09 3.91
938 969 0.517316 ATTCGTTCCTTCGTTGCTGC 59.483 50.000 0.00 0.00 0.00 5.25
939 970 1.827315 TTCGTTCCTTCGTTGCTGCG 61.827 55.000 0.00 0.00 0.00 5.18
940 971 2.127232 GTTCCTTCGTTGCTGCGC 60.127 61.111 0.00 0.00 0.00 6.09
941 972 2.590291 TTCCTTCGTTGCTGCGCA 60.590 55.556 10.98 10.98 36.47 6.09
942 973 2.892334 TTCCTTCGTTGCTGCGCAC 61.892 57.895 5.66 4.25 38.71 5.34
943 974 4.389576 CCTTCGTTGCTGCGCACC 62.390 66.667 5.66 0.00 38.71 5.01
944 975 4.724697 CTTCGTTGCTGCGCACCG 62.725 66.667 5.66 12.60 45.33 4.94
1101 1149 2.826725 CCCCGAGATTCCTCAGGTATAC 59.173 54.545 0.00 0.00 39.39 1.47
1107 1155 0.105349 TTCCTCAGGTATACCCCCGG 60.105 60.000 18.65 15.08 36.42 5.73
1112 1160 2.123295 GGTATACCCCCGGTCCGT 60.123 66.667 11.17 0.00 37.09 4.69
1173 1542 1.874872 GGTAGTGGCTTGTTTGCGTTA 59.125 47.619 0.00 0.00 0.00 3.18
1189 1558 5.773239 TGCGTTAATTAGTAGTTGCTGTC 57.227 39.130 0.00 0.00 0.00 3.51
1220 1589 6.954616 TTTCAATCGTTTCGATAGTTAGCA 57.045 33.333 5.11 0.00 46.30 3.49
1235 1604 3.056250 AGTTAGCATATGCAGATCTCCCG 60.056 47.826 28.62 0.00 45.16 5.14
1243 1612 2.950781 TGCAGATCTCCCGAAGTAGAT 58.049 47.619 0.00 0.00 35.15 1.98
1247 1616 4.148838 CAGATCTCCCGAAGTAGATCCTT 58.851 47.826 8.35 0.00 46.16 3.36
1249 1618 2.032620 TCTCCCGAAGTAGATCCTTGC 58.967 52.381 0.00 0.00 0.00 4.01
1250 1619 1.069358 CTCCCGAAGTAGATCCTTGCC 59.931 57.143 0.00 0.00 0.00 4.52
1254 1623 3.610911 CCGAAGTAGATCCTTGCCTTTT 58.389 45.455 0.00 0.00 0.00 2.27
1265 1634 8.885693 AGATCCTTGCCTTTTTACTTAGATTT 57.114 30.769 0.00 0.00 0.00 2.17
1271 1640 7.817418 TGCCTTTTTACTTAGATTTGAGTGT 57.183 32.000 0.00 0.00 0.00 3.55
1272 1641 7.648142 TGCCTTTTTACTTAGATTTGAGTGTG 58.352 34.615 0.00 0.00 0.00 3.82
1273 1642 7.500892 TGCCTTTTTACTTAGATTTGAGTGTGA 59.499 33.333 0.00 0.00 0.00 3.58
1282 1668 8.367911 ACTTAGATTTGAGTGTGATACTGTTCA 58.632 33.333 0.00 0.00 40.53 3.18
1290 1676 6.646653 TGAGTGTGATACTGTTCATCTGTTTC 59.353 38.462 0.00 0.00 40.53 2.78
1293 1679 4.929808 GTGATACTGTTCATCTGTTTCCGT 59.070 41.667 0.00 0.00 0.00 4.69
1320 1706 0.380378 CGTGGGTTGGCCGAATTATG 59.620 55.000 0.00 0.00 34.97 1.90
1326 1712 3.243401 GGGTTGGCCGAATTATGCTTTAG 60.243 47.826 0.00 0.00 34.97 1.85
1331 1717 5.406649 TGGCCGAATTATGCTTTAGTTTTG 58.593 37.500 0.00 0.00 0.00 2.44
1332 1718 4.267690 GGCCGAATTATGCTTTAGTTTTGC 59.732 41.667 0.00 0.00 0.00 3.68
1333 1719 5.102313 GCCGAATTATGCTTTAGTTTTGCT 58.898 37.500 0.00 0.00 0.00 3.91
1334 1720 5.576774 GCCGAATTATGCTTTAGTTTTGCTT 59.423 36.000 0.00 0.00 0.00 3.91
1335 1721 6.454186 GCCGAATTATGCTTTAGTTTTGCTTG 60.454 38.462 0.00 0.00 0.00 4.01
1341 1728 9.807649 ATTATGCTTTAGTTTTGCTTGGATAAG 57.192 29.630 0.00 0.00 36.97 1.73
1357 1744 9.654663 GCTTGGATAAGATTAATAATCGTAGGT 57.345 33.333 12.64 0.01 42.75 3.08
1376 1764 7.025963 CGTAGGTGTATATATTCCCGAGTTTC 58.974 42.308 0.00 0.00 0.00 2.78
1391 1779 5.335583 CCCGAGTTTCTCAATAATTTGCACA 60.336 40.000 0.00 0.00 32.61 4.57
1397 1785 5.643379 TCTCAATAATTTGCACACCCTTC 57.357 39.130 0.00 0.00 32.61 3.46
1409 1797 1.066645 ACACCCTTCGGATCCGTTTAC 60.067 52.381 32.15 0.00 40.74 2.01
1425 1813 1.164411 TTACGAGGGTTTGCATGCTG 58.836 50.000 20.33 1.16 0.00 4.41
1427 1815 0.823356 ACGAGGGTTTGCATGCTGTT 60.823 50.000 20.33 0.00 0.00 3.16
1432 1820 1.742831 GGGTTTGCATGCTGTTCGATA 59.257 47.619 20.33 0.00 0.00 2.92
1470 1858 3.684788 ACGAGGATGCAGTATGTTGTTTC 59.315 43.478 0.00 0.00 39.31 2.78
1488 1876 8.037758 TGTTGTTTCCACTTGATTTATGTTTGT 58.962 29.630 0.00 0.00 0.00 2.83
1489 1877 8.878769 GTTGTTTCCACTTGATTTATGTTTGTT 58.121 29.630 0.00 0.00 0.00 2.83
1490 1878 9.442047 TTGTTTCCACTTGATTTATGTTTGTTT 57.558 25.926 0.00 0.00 0.00 2.83
1491 1879 9.092876 TGTTTCCACTTGATTTATGTTTGTTTC 57.907 29.630 0.00 0.00 0.00 2.78
1492 1880 8.547894 GTTTCCACTTGATTTATGTTTGTTTCC 58.452 33.333 0.00 0.00 0.00 3.13
1493 1881 7.353414 TCCACTTGATTTATGTTTGTTTCCA 57.647 32.000 0.00 0.00 0.00 3.53
1494 1882 7.206687 TCCACTTGATTTATGTTTGTTTCCAC 58.793 34.615 0.00 0.00 0.00 4.02
1495 1883 7.069331 TCCACTTGATTTATGTTTGTTTCCACT 59.931 33.333 0.00 0.00 0.00 4.00
1496 1884 7.710475 CCACTTGATTTATGTTTGTTTCCACTT 59.290 33.333 0.00 0.00 0.00 3.16
1497 1885 8.542132 CACTTGATTTATGTTTGTTTCCACTTG 58.458 33.333 0.00 0.00 0.00 3.16
1498 1886 8.474025 ACTTGATTTATGTTTGTTTCCACTTGA 58.526 29.630 0.00 0.00 0.00 3.02
1499 1887 9.480053 CTTGATTTATGTTTGTTTCCACTTGAT 57.520 29.630 0.00 0.00 0.00 2.57
1500 1888 9.829507 TTGATTTATGTTTGTTTCCACTTGATT 57.170 25.926 0.00 0.00 0.00 2.57
1501 1889 9.829507 TGATTTATGTTTGTTTCCACTTGATTT 57.170 25.926 0.00 0.00 0.00 2.17
1506 1894 8.816640 ATGTTTGTTTCCACTTGATTTATGTC 57.183 30.769 0.00 0.00 0.00 3.06
1509 1897 7.447374 TTGTTTCCACTTGATTTATGTCGAT 57.553 32.000 0.00 0.00 0.00 3.59
1512 1900 7.390440 TGTTTCCACTTGATTTATGTCGATCTT 59.610 33.333 0.00 0.00 0.00 2.40
1517 1905 9.869844 CCACTTGATTTATGTCGATCTTTTATC 57.130 33.333 0.00 0.00 0.00 1.75
1569 1968 7.662604 AATTGATTGTTTCCTGAAGATTTGC 57.337 32.000 0.00 0.00 0.00 3.68
1602 2001 3.804873 GTCTAACGCAATCAGATTCCTCC 59.195 47.826 0.00 0.00 0.00 4.30
1610 2009 4.381292 GCAATCAGATTCCTCCAGTTTTGG 60.381 45.833 0.00 0.00 46.49 3.28
1611 2010 2.795329 TCAGATTCCTCCAGTTTTGGC 58.205 47.619 0.00 0.00 44.63 4.52
1613 2012 1.428912 AGATTCCTCCAGTTTTGGCCA 59.571 47.619 0.00 0.00 44.63 5.36
1617 2019 0.901580 CCTCCAGTTTTGGCCATGCT 60.902 55.000 6.09 1.72 44.63 3.79
1636 2038 4.985413 TGCTGATATTTTGTAGCAACTGC 58.015 39.130 0.00 0.00 42.60 4.40
1638 2040 5.125900 TGCTGATATTTTGTAGCAACTGCAT 59.874 36.000 4.22 0.00 42.60 3.96
1659 2062 7.874940 TGCATAATATTTTGCAGTCTGTATCC 58.125 34.615 24.17 0.00 43.54 2.59
1687 2090 7.504924 TTTATCTCCTGAATTTCGTTGTTGT 57.495 32.000 0.00 0.00 0.00 3.32
1778 2181 1.222567 AGTTGTGTGGGGAAGAGGTT 58.777 50.000 0.00 0.00 0.00 3.50
1817 2220 4.505566 GCTATGACAATGGGGCTATCTTCA 60.506 45.833 0.00 0.00 0.00 3.02
1874 2277 3.053896 CGTTTTGCGACCCCTCCC 61.054 66.667 0.00 0.00 44.77 4.30
1981 2385 9.705290 AAGTTTGTTTGTTTATTTCTCAACTGT 57.295 25.926 0.00 0.00 0.00 3.55
2112 2519 2.559698 TGTTGGAATTCTCAAGGCGA 57.440 45.000 5.23 0.00 0.00 5.54
3050 3520 6.582295 GTGTATGGTGTTTGTGCTAATTCTTG 59.418 38.462 0.00 0.00 0.00 3.02
3152 3622 3.055891 AGGTTATTGATTTTGGCAGCACC 60.056 43.478 0.00 0.00 39.84 5.01
3256 3726 1.075659 AGTGCAAAGGCTCTTCCCC 59.924 57.895 0.00 0.00 40.78 4.81
3398 3872 2.159382 ACGTCATTGGGGCTTACTTTG 58.841 47.619 0.00 0.00 0.00 2.77
3408 3882 5.437060 TGGGGCTTACTTTGATCTGTTATC 58.563 41.667 0.00 0.00 0.00 1.75
3559 4033 2.409948 AGAAGGCTGAGTATGTTGCC 57.590 50.000 0.00 0.00 45.21 4.52
3688 4162 1.612676 GAAGGGCCGTTTAAACTGGT 58.387 50.000 21.88 9.18 0.00 4.00
3777 4257 3.733727 CCTGTTGTTACCGTTCAAATTGC 59.266 43.478 0.00 0.00 0.00 3.56
4012 4492 0.602106 CCTAGCATCTGCCATGTCGG 60.602 60.000 0.00 0.00 43.38 4.79
4020 4500 3.965379 TCTGCCATGTCGGTAACTTAA 57.035 42.857 0.00 0.00 36.97 1.85
4021 4501 3.592059 TCTGCCATGTCGGTAACTTAAC 58.408 45.455 0.00 0.00 36.97 2.01
4022 4502 3.259876 TCTGCCATGTCGGTAACTTAACT 59.740 43.478 0.00 0.00 36.97 2.24
4023 4503 4.000988 CTGCCATGTCGGTAACTTAACTT 58.999 43.478 0.00 0.00 36.97 2.66
4024 4504 3.749088 TGCCATGTCGGTAACTTAACTTG 59.251 43.478 0.00 0.00 36.97 3.16
4026 4506 4.931002 GCCATGTCGGTAACTTAACTTGTA 59.069 41.667 0.00 0.00 36.97 2.41
4027 4507 5.163923 GCCATGTCGGTAACTTAACTTGTAC 60.164 44.000 0.00 0.00 36.97 2.90
4222 5540 5.459536 TGTAATCGGGATGAGATTCTCTG 57.540 43.478 14.54 0.83 38.96 3.35
4314 6949 8.511604 TTTGAATAAAATTGGGCAGTTCAAAA 57.488 26.923 7.62 0.00 39.61 2.44
4403 7083 9.826574 AAATATGTAGAAATCCGCTTAAGTACA 57.173 29.630 4.02 2.86 0.00 2.90
4404 7084 9.826574 AATATGTAGAAATCCGCTTAAGTACAA 57.173 29.630 4.02 0.00 0.00 2.41
4405 7085 9.998106 ATATGTAGAAATCCGCTTAAGTACAAT 57.002 29.630 4.02 0.00 0.00 2.71
4407 7087 6.537301 TGTAGAAATCCGCTTAAGTACAATGG 59.463 38.462 4.02 0.00 0.00 3.16
4408 7088 4.335594 AGAAATCCGCTTAAGTACAATGGC 59.664 41.667 4.02 0.00 0.00 4.40
4410 7090 3.275617 TCCGCTTAAGTACAATGGCAT 57.724 42.857 4.02 0.00 0.00 4.40
4412 7092 3.376859 TCCGCTTAAGTACAATGGCATTG 59.623 43.478 32.73 32.73 45.59 2.82
4441 7121 3.906846 AGGGAGCCTAGATATGAAACCTG 59.093 47.826 0.00 0.00 28.47 4.00
4442 7122 3.648545 GGGAGCCTAGATATGAAACCTGT 59.351 47.826 0.00 0.00 0.00 4.00
4465 8772 9.814507 CTGTACAATTGCTAACGTTTTATACAA 57.185 29.630 5.91 4.92 0.00 2.41
4518 8825 1.987855 CACCGGTGGCTCCTCCTAA 60.988 63.158 27.57 0.00 35.26 2.69
4520 8827 2.494918 CGGTGGCTCCTCCTAACG 59.505 66.667 3.83 0.00 35.26 3.18
4521 8828 2.348888 CGGTGGCTCCTCCTAACGT 61.349 63.158 3.83 0.00 35.26 3.99
4523 8830 0.323957 GGTGGCTCCTCCTAACGTTT 59.676 55.000 5.91 0.00 35.26 3.60
4525 8832 2.027837 GGTGGCTCCTCCTAACGTTTTA 60.028 50.000 5.91 0.00 35.26 1.52
4526 8833 3.370209 GGTGGCTCCTCCTAACGTTTTAT 60.370 47.826 5.91 0.00 35.26 1.40
4624 8960 4.491676 GTTATGGCTAAGAGTCACGTGAA 58.508 43.478 21.95 2.84 29.65 3.18
4665 9007 5.212532 TCTTGTTGTATTGCAATGGCTTT 57.787 34.783 22.27 0.00 41.91 3.51
4865 9211 2.462456 TGCAGCTGTAGACAAGGAAG 57.538 50.000 16.64 0.00 0.00 3.46
4869 9215 2.497675 CAGCTGTAGACAAGGAAGGCTA 59.502 50.000 5.25 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.311486 AGGAGAAAAGCGTTGAGAGAG 57.689 47.619 0.00 0.00 0.00 3.20
1 2 3.367498 GCTAGGAGAAAAGCGTTGAGAGA 60.367 47.826 0.00 0.00 0.00 3.10
2 3 2.926838 GCTAGGAGAAAAGCGTTGAGAG 59.073 50.000 0.00 0.00 0.00 3.20
3 4 2.353803 GGCTAGGAGAAAAGCGTTGAGA 60.354 50.000 0.00 0.00 39.71 3.27
4 5 2.003301 GGCTAGGAGAAAAGCGTTGAG 58.997 52.381 0.00 0.00 39.71 3.02
5 6 1.671850 CGGCTAGGAGAAAAGCGTTGA 60.672 52.381 0.00 0.00 39.71 3.18
6 7 0.721718 CGGCTAGGAGAAAAGCGTTG 59.278 55.000 0.00 0.00 39.71 4.10
7 8 0.391263 CCGGCTAGGAGAAAAGCGTT 60.391 55.000 0.00 0.00 45.00 4.84
8 9 1.218316 CCGGCTAGGAGAAAAGCGT 59.782 57.895 0.00 0.00 45.00 5.07
9 10 1.515954 TCCGGCTAGGAGAAAAGCG 59.484 57.895 0.00 0.00 45.98 4.68
18 19 1.115467 ATGTGAAGAGTCCGGCTAGG 58.885 55.000 0.00 0.00 42.97 3.02
19 20 1.478510 ACATGTGAAGAGTCCGGCTAG 59.521 52.381 0.00 0.00 0.00 3.42
20 21 1.204704 CACATGTGAAGAGTCCGGCTA 59.795 52.381 21.64 0.00 0.00 3.93
21 22 0.036952 CACATGTGAAGAGTCCGGCT 60.037 55.000 21.64 0.00 0.00 5.52
22 23 0.320771 ACACATGTGAAGAGTCCGGC 60.321 55.000 31.94 0.00 0.00 6.13
23 24 3.914984 ACACATGTGAAGAGTCCGG 57.085 52.632 31.94 0.00 0.00 5.14
33 34 8.843262 ACAATGAGATTTATATCCACACATGTG 58.157 33.333 24.25 24.25 45.23 3.21
55 56 5.745227 ACGGAAATATCTTCTCCACACAAT 58.255 37.500 0.00 0.00 0.00 2.71
76 77 1.507141 AAAACCGCCAGCAAGAGACG 61.507 55.000 0.00 0.00 0.00 4.18
120 123 0.896019 CCCCAATACAACCAACCGCA 60.896 55.000 0.00 0.00 0.00 5.69
156 176 0.800012 TTCGGCACCTAAATTCGCAC 59.200 50.000 0.00 0.00 0.00 5.34
159 179 4.755123 AGGAATATTCGGCACCTAAATTCG 59.245 41.667 9.32 0.00 0.00 3.34
195 215 4.750952 GTTTTCTAACCTGAGTTGGAGC 57.249 45.455 0.00 0.00 43.41 4.70
219 239 1.004679 GCAACGAAACCCCTCGGTA 60.005 57.895 0.00 0.00 43.71 4.02
278 298 8.825667 AAATTGAAAACATATAACTGCGGTTT 57.174 26.923 17.69 7.24 36.92 3.27
296 316 2.807967 CGCACTCTGTGGAGAAATTGAA 59.192 45.455 0.00 0.00 41.86 2.69
297 317 2.224281 ACGCACTCTGTGGAGAAATTGA 60.224 45.455 0.00 0.00 41.86 2.57
303 323 0.315251 CAGAACGCACTCTGTGGAGA 59.685 55.000 4.25 0.00 41.86 3.71
362 382 5.077134 CTCTTGTGAGTATGACATGTGGA 57.923 43.478 1.15 0.00 27.69 4.02
380 400 2.490115 CGAGAGGAAGCAGTACACTCTT 59.510 50.000 0.00 0.00 38.54 2.85
527 558 0.593128 CCTTGTGCTGTTTCCTTCCG 59.407 55.000 0.00 0.00 0.00 4.30
719 750 0.389757 GAGGCGTGGGTAGGAGAATC 59.610 60.000 0.00 0.00 0.00 2.52
936 967 4.243008 TTTGGTCTCCGGTGCGCA 62.243 61.111 5.66 5.66 0.00 6.09
938 969 3.047877 GGTTTGGTCTCCGGTGCG 61.048 66.667 0.00 0.00 0.00 5.34
939 970 0.893727 ATTGGTTTGGTCTCCGGTGC 60.894 55.000 0.00 0.00 0.00 5.01
940 971 1.269448 CAATTGGTTTGGTCTCCGGTG 59.731 52.381 0.00 0.00 0.00 4.94
941 972 1.616159 CAATTGGTTTGGTCTCCGGT 58.384 50.000 0.00 0.00 0.00 5.28
1089 1137 1.298906 ACCGGGGGTATACCTGAGGA 61.299 60.000 25.78 0.00 39.34 3.71
1126 1495 6.500684 CAGATCTGCAGGCTAAAAGTTAAA 57.499 37.500 15.13 0.00 0.00 1.52
1173 1542 5.720202 TCGACATGACAGCAACTACTAATT 58.280 37.500 0.00 0.00 0.00 1.40
1215 1584 3.165071 TCGGGAGATCTGCATATGCTAA 58.835 45.455 27.13 15.88 42.66 3.09
1220 1589 4.667573 TCTACTTCGGGAGATCTGCATAT 58.332 43.478 16.72 0.00 39.57 1.78
1235 1604 7.689446 AAGTAAAAAGGCAAGGATCTACTTC 57.311 36.000 0.00 0.00 0.00 3.01
1243 1612 7.724061 ACTCAAATCTAAGTAAAAAGGCAAGGA 59.276 33.333 0.00 0.00 0.00 3.36
1247 1616 7.500892 TCACACTCAAATCTAAGTAAAAAGGCA 59.499 33.333 0.00 0.00 0.00 4.75
1265 1634 5.728637 ACAGATGAACAGTATCACACTCA 57.271 39.130 0.00 0.00 34.26 3.41
1271 1640 5.147330 ACGGAAACAGATGAACAGTATCA 57.853 39.130 0.00 0.00 0.00 2.15
1272 1641 7.772332 AATACGGAAACAGATGAACAGTATC 57.228 36.000 0.00 0.00 0.00 2.24
1273 1642 7.926555 CCTAATACGGAAACAGATGAACAGTAT 59.073 37.037 0.00 0.00 0.00 2.12
1278 1664 4.272748 GCCCTAATACGGAAACAGATGAAC 59.727 45.833 0.00 0.00 0.00 3.18
1282 1668 2.433239 ACGCCCTAATACGGAAACAGAT 59.567 45.455 0.00 0.00 0.00 2.90
1290 1676 0.812412 CAACCCACGCCCTAATACGG 60.812 60.000 0.00 0.00 0.00 4.02
1293 1679 1.225148 GCCAACCCACGCCCTAATA 59.775 57.895 0.00 0.00 0.00 0.98
1316 1702 9.019656 TCTTATCCAAGCAAAACTAAAGCATAA 57.980 29.630 0.00 0.00 0.00 1.90
1320 1706 9.855021 TTAATCTTATCCAAGCAAAACTAAAGC 57.145 29.630 0.00 0.00 0.00 3.51
1331 1717 9.654663 ACCTACGATTATTAATCTTATCCAAGC 57.345 33.333 13.19 0.00 35.73 4.01
1350 1737 5.809001 ACTCGGGAATATATACACCTACGA 58.191 41.667 0.00 7.26 0.00 3.43
1351 1738 6.506500 AACTCGGGAATATATACACCTACG 57.493 41.667 0.00 4.24 0.00 3.51
1352 1739 8.120140 AGAAACTCGGGAATATATACACCTAC 57.880 38.462 0.00 0.00 0.00 3.18
1354 1741 6.781014 TGAGAAACTCGGGAATATATACACCT 59.219 38.462 0.00 0.00 32.35 4.00
1355 1742 6.989659 TGAGAAACTCGGGAATATATACACC 58.010 40.000 0.00 0.00 32.35 4.16
1370 1758 5.863935 GGGTGTGCAAATTATTGAGAAACTC 59.136 40.000 0.00 0.00 38.94 3.01
1376 1764 4.414852 CGAAGGGTGTGCAAATTATTGAG 58.585 43.478 0.00 0.00 38.94 3.02
1391 1779 2.227768 TCGTAAACGGATCCGAAGGGT 61.228 52.381 39.55 20.27 44.69 4.34
1397 1785 0.174162 AACCCTCGTAAACGGATCCG 59.826 55.000 32.20 32.20 46.03 4.18
1409 1797 0.109597 GAACAGCATGCAAACCCTCG 60.110 55.000 21.98 0.00 42.53 4.63
1438 1826 1.347707 TGCATCCTCGTCTGTTCCTTT 59.652 47.619 0.00 0.00 0.00 3.11
1439 1827 0.976641 TGCATCCTCGTCTGTTCCTT 59.023 50.000 0.00 0.00 0.00 3.36
1440 1828 0.534412 CTGCATCCTCGTCTGTTCCT 59.466 55.000 0.00 0.00 0.00 3.36
1441 1829 0.247736 ACTGCATCCTCGTCTGTTCC 59.752 55.000 0.00 0.00 0.00 3.62
1442 1830 2.941453 TACTGCATCCTCGTCTGTTC 57.059 50.000 0.00 0.00 0.00 3.18
1443 1831 2.497675 ACATACTGCATCCTCGTCTGTT 59.502 45.455 0.00 0.00 0.00 3.16
1444 1832 2.103373 ACATACTGCATCCTCGTCTGT 58.897 47.619 0.00 0.00 0.00 3.41
1447 1835 2.893637 ACAACATACTGCATCCTCGTC 58.106 47.619 0.00 0.00 0.00 4.20
1456 1844 4.829064 TCAAGTGGAAACAACATACTGC 57.171 40.909 0.00 0.00 46.06 4.40
1470 1858 7.209475 AGTGGAAACAAACATAAATCAAGTGG 58.791 34.615 0.00 0.00 46.06 4.00
1486 1874 6.878923 AGATCGACATAAATCAAGTGGAAACA 59.121 34.615 0.00 0.00 38.70 2.83
1488 1876 7.921786 AAGATCGACATAAATCAAGTGGAAA 57.078 32.000 0.00 0.00 0.00 3.13
1489 1877 7.921786 AAAGATCGACATAAATCAAGTGGAA 57.078 32.000 0.00 0.00 0.00 3.53
1490 1878 7.921786 AAAAGATCGACATAAATCAAGTGGA 57.078 32.000 0.00 0.00 0.00 4.02
1491 1879 9.869844 GATAAAAGATCGACATAAATCAAGTGG 57.130 33.333 0.00 0.00 0.00 4.00
1492 1880 9.573102 CGATAAAAGATCGACATAAATCAAGTG 57.427 33.333 0.68 0.00 43.59 3.16
1493 1881 9.314321 ACGATAAAAGATCGACATAAATCAAGT 57.686 29.630 13.45 0.00 43.59 3.16
1496 1884 9.308318 TGAACGATAAAAGATCGACATAAATCA 57.692 29.630 13.45 4.11 43.59 2.57
1512 1900 7.796660 GCGCAACAGATTATAATGAACGATAAA 59.203 33.333 0.30 0.00 0.00 1.40
1517 1905 5.083136 AGCGCAACAGATTATAATGAACG 57.917 39.130 11.47 0.00 0.00 3.95
1520 1908 7.786178 ACTTAAGCGCAACAGATTATAATGA 57.214 32.000 11.47 0.00 0.00 2.57
1534 1922 6.072175 AGGAAACAATCAATTACTTAAGCGCA 60.072 34.615 11.47 0.00 0.00 6.09
1536 1924 7.526608 TCAGGAAACAATCAATTACTTAAGCG 58.473 34.615 1.29 0.00 0.00 4.68
1548 1947 5.787953 TGCAAATCTTCAGGAAACAATCA 57.212 34.783 0.00 0.00 0.00 2.57
1569 1968 7.862873 TCTGATTGCGTTAGACTTAGTCATATG 59.137 37.037 15.23 8.13 34.60 1.78
1602 2001 4.395959 AATATCAGCATGGCCAAAACTG 57.604 40.909 21.17 21.17 36.16 3.16
1610 2009 4.572985 TGCTACAAAATATCAGCATGGC 57.427 40.909 0.00 0.00 39.03 4.40
1611 2010 5.975344 CAGTTGCTACAAAATATCAGCATGG 59.025 40.000 0.13 0.00 43.13 3.66
1613 2012 5.125900 TGCAGTTGCTACAAAATATCAGCAT 59.874 36.000 5.62 0.00 43.13 3.79
1647 2049 7.816995 CAGGAGATAAATTAGGATACAGACTGC 59.183 40.741 1.25 0.00 41.41 4.40
1657 2060 9.109393 CAACGAAATTCAGGAGATAAATTAGGA 57.891 33.333 0.00 0.00 0.00 2.94
1679 2082 9.980780 AAAAAGAAATTCCATTTTACAACAACG 57.019 25.926 5.61 0.00 31.47 4.10
1726 2129 7.156876 TGCACCAGAAGACAATTATAAAAGG 57.843 36.000 0.00 0.00 0.00 3.11
1760 2163 1.318576 CAACCTCTTCCCCACACAAC 58.681 55.000 0.00 0.00 0.00 3.32
1761 2164 0.467290 GCAACCTCTTCCCCACACAA 60.467 55.000 0.00 0.00 0.00 3.33
1775 2178 7.432252 GTCATAGCACTAATTACATTTGCAACC 59.568 37.037 0.00 0.00 35.57 3.77
1778 2181 7.622893 TGTCATAGCACTAATTACATTTGCA 57.377 32.000 0.00 0.00 35.57 4.08
1817 2220 3.264450 CCTGAGAGGAAACAATACCACCT 59.736 47.826 0.00 0.00 37.67 4.00
1874 2277 4.443175 CCATCCTTGTCATCTTCTCTCAGG 60.443 50.000 0.00 0.00 0.00 3.86
1975 2379 3.896648 ATGGAAAACGCTACACAGTTG 57.103 42.857 0.00 0.00 0.00 3.16
1981 2385 7.653647 AGAACAAAAATATGGAAAACGCTACA 58.346 30.769 0.00 0.00 0.00 2.74
2423 2883 5.048713 ACAACTGCAAAATAGACCAGCTTAC 60.049 40.000 0.00 0.00 0.00 2.34
2800 3260 9.593134 GTTAGATAATCCTAGCGATCATGAATT 57.407 33.333 0.00 0.00 0.00 2.17
2801 3261 7.918033 CGTTAGATAATCCTAGCGATCATGAAT 59.082 37.037 0.00 0.00 43.09 2.57
2802 3262 7.094334 ACGTTAGATAATCCTAGCGATCATGAA 60.094 37.037 12.65 0.00 43.09 2.57
2972 3441 5.105146 TGCAAGGCCAAGTTAGAAAAAGAAA 60.105 36.000 5.01 0.00 0.00 2.52
2980 3449 2.656947 AACTGCAAGGCCAAGTTAGA 57.343 45.000 5.01 0.00 39.30 2.10
3016 3485 7.229707 AGCACAAACACCATACACAATAAACTA 59.770 33.333 0.00 0.00 0.00 2.24
3032 3501 4.243007 AGCCAAGAATTAGCACAAACAC 57.757 40.909 0.00 0.00 0.00 3.32
3050 3520 5.470437 GGATGAAACCTAGCAGTTATTAGCC 59.530 44.000 0.00 0.00 0.00 3.93
3152 3622 1.210234 TGGTCCTGCTGGTCATATGTG 59.790 52.381 9.73 0.00 34.23 3.21
3256 3726 1.547372 CAACCCCAAAATCTGGCTGAG 59.453 52.381 0.00 0.00 44.90 3.35
3299 3769 0.834612 TCCAAGTCCTGAACAACCGT 59.165 50.000 0.00 0.00 0.00 4.83
3300 3770 1.806542 CATCCAAGTCCTGAACAACCG 59.193 52.381 0.00 0.00 0.00 4.44
3398 3872 6.259608 CCATCCTTGTGACTTGATAACAGATC 59.740 42.308 0.00 0.00 0.00 2.75
3408 3882 5.067674 TCAAAAACTCCATCCTTGTGACTTG 59.932 40.000 0.00 0.00 0.00 3.16
3559 4033 2.168521 ACACTGGTATGGATCAAGGACG 59.831 50.000 0.00 0.00 0.00 4.79
3777 4257 5.925969 AGCCAAACAAATCTAAAAATGGTCG 59.074 36.000 0.00 0.00 0.00 4.79
3821 4301 2.502142 TCACCAGATTCTGCTTGCAT 57.498 45.000 8.23 0.00 0.00 3.96
3866 4346 5.279106 CCCTTGCAAAAGATTGATGAAGTCA 60.279 40.000 0.00 0.00 38.94 3.41
4020 4500 3.994392 CACGGCTCAAACATAGTACAAGT 59.006 43.478 0.00 0.00 0.00 3.16
4021 4501 4.091509 GTCACGGCTCAAACATAGTACAAG 59.908 45.833 0.00 0.00 0.00 3.16
4022 4502 3.991773 GTCACGGCTCAAACATAGTACAA 59.008 43.478 0.00 0.00 0.00 2.41
4023 4503 3.257375 AGTCACGGCTCAAACATAGTACA 59.743 43.478 0.00 0.00 0.00 2.90
4024 4504 3.846360 AGTCACGGCTCAAACATAGTAC 58.154 45.455 0.00 0.00 0.00 2.73
4026 4506 3.326747 GAAGTCACGGCTCAAACATAGT 58.673 45.455 0.00 0.00 0.00 2.12
4027 4507 2.673368 GGAAGTCACGGCTCAAACATAG 59.327 50.000 0.00 0.00 0.00 2.23
4222 5540 9.754382 AGTGTTGCCATCAAAATATATTCATTC 57.246 29.630 0.00 0.00 33.37 2.67
4287 6922 8.688747 TTGAACTGCCCAATTTTATTCAAAAT 57.311 26.923 0.00 0.00 44.45 1.82
4325 6962 3.759086 TGAGTCGTATTTCTCTGCTGTCT 59.241 43.478 0.00 0.00 0.00 3.41
4386 7066 4.095782 TGCCATTGTACTTAAGCGGATTTC 59.904 41.667 1.29 0.00 0.00 2.17
4407 7087 2.883888 TAGGCTCCCTTTGGAACAATGC 60.884 50.000 0.00 0.00 41.17 3.56
4408 7088 3.019564 CTAGGCTCCCTTTGGAACAATG 58.980 50.000 0.00 0.00 41.17 2.82
4410 7090 2.344592 TCTAGGCTCCCTTTGGAACAA 58.655 47.619 0.00 0.00 41.17 2.83
4412 7092 4.348168 TCATATCTAGGCTCCCTTTGGAAC 59.652 45.833 0.00 0.00 41.17 3.62
4413 7093 4.566837 TCATATCTAGGCTCCCTTTGGAA 58.433 43.478 0.00 0.00 41.17 3.53
4465 8772 3.146104 ACAACCTAGCACAGCAAGAAT 57.854 42.857 0.00 0.00 0.00 2.40
4518 8825 6.569179 AGCCATTTGACTTGTATAAAACGT 57.431 33.333 0.00 0.00 0.00 3.99
4520 8827 8.515414 AGAGAAGCCATTTGACTTGTATAAAAC 58.485 33.333 0.00 0.00 0.00 2.43
4521 8828 8.635765 AGAGAAGCCATTTGACTTGTATAAAA 57.364 30.769 0.00 0.00 0.00 1.52
4523 8830 9.162764 GTAAGAGAAGCCATTTGACTTGTATAA 57.837 33.333 0.00 0.00 0.00 0.98
4525 8832 6.313905 CGTAAGAGAAGCCATTTGACTTGTAT 59.686 38.462 0.00 0.00 43.02 2.29
4526 8833 5.637810 CGTAAGAGAAGCCATTTGACTTGTA 59.362 40.000 0.00 0.00 43.02 2.41
4624 8960 2.158445 AGAGGTCCGAGGCATACATAGT 60.158 50.000 0.00 0.00 0.00 2.12
4665 9007 4.283678 CGACATTGAAAACGGCAGTTAAA 58.716 39.130 1.70 0.00 40.18 1.52
4677 9019 3.247173 GCAAAAACATGCCGACATTGAAA 59.753 39.130 0.00 0.00 40.49 2.69
4678 9020 2.799412 GCAAAAACATGCCGACATTGAA 59.201 40.909 0.00 0.00 40.49 2.69
4796 9138 6.857451 GCTGTTGCAAATTTTATCCCAAAAAG 59.143 34.615 0.00 0.00 39.41 2.27
4865 9211 3.274288 AGCATTTCTAGTGCAGTTAGCC 58.726 45.455 0.00 0.00 44.87 3.93
4869 9215 3.604582 GGAGAGCATTTCTAGTGCAGTT 58.395 45.455 0.00 0.00 44.87 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.