Multiple sequence alignment - TraesCS6D01G193100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G193100 chr6D 100.000 2896 0 0 1 2896 267238729 267235834 0.000000e+00 5349.0
1 TraesCS6D01G193100 chr6D 98.945 474 5 0 1422 1895 267515190 267514717 0.000000e+00 848.0
2 TraesCS6D01G193100 chr6D 88.300 453 45 6 2391 2842 9462371 9461926 1.180000e-148 536.0
3 TraesCS6D01G193100 chr6D 92.035 226 16 1 2154 2379 9462776 9462553 1.670000e-82 316.0
4 TraesCS6D01G193100 chr6D 92.593 135 10 0 1017 1151 267515402 267515268 8.190000e-46 195.0
5 TraesCS6D01G193100 chr6A 93.985 1596 59 13 510 2094 380362608 380361039 0.000000e+00 2381.0
6 TraesCS6D01G193100 chr6A 96.673 511 17 0 1413 1923 381026141 381025631 0.000000e+00 850.0
7 TraesCS6D01G193100 chr6A 92.701 137 10 0 1017 1153 381026350 381026214 6.330000e-47 198.0
8 TraesCS6D01G193100 chr6A 100.000 32 0 0 2122 2153 380361041 380361010 3.120000e-05 60.2
9 TraesCS6D01G193100 chr6B 91.995 1549 48 17 566 2098 415790344 415788856 0.000000e+00 2104.0
10 TraesCS6D01G193100 chr6B 96.477 511 18 0 1413 1923 415864166 415863656 0.000000e+00 845.0
11 TraesCS6D01G193100 chr6B 81.955 266 34 5 1 264 676484651 676484398 2.260000e-51 213.0
12 TraesCS6D01G193100 chr6B 95.312 128 6 0 1024 1151 415864360 415864233 1.360000e-48 204.0
13 TraesCS6D01G193100 chr6B 79.195 298 45 8 1 294 535772472 535772756 1.060000e-44 191.0
14 TraesCS6D01G193100 chr6B 80.591 237 40 6 62 293 615634126 615633891 8.250000e-41 178.0
15 TraesCS6D01G193100 chr6B 95.455 44 2 0 536 579 415790401 415790358 1.440000e-08 71.3
16 TraesCS6D01G193100 chr4A 93.004 486 31 2 1413 1895 640232597 640233082 0.000000e+00 706.0
17 TraesCS6D01G193100 chr4A 79.276 304 54 7 1 297 717722446 717722145 1.360000e-48 204.0
18 TraesCS6D01G193100 chr4A 79.461 297 43 9 2 294 614962973 614962691 8.190000e-46 195.0
19 TraesCS6D01G193100 chr1B 93.542 480 20 5 2391 2868 642812550 642812080 0.000000e+00 704.0
20 TraesCS6D01G193100 chr1B 91.441 222 17 2 2159 2380 174596259 174596040 1.300000e-78 303.0
21 TraesCS6D01G193100 chr1B 91.329 173 4 7 2703 2868 174595964 174595796 2.900000e-55 226.0
22 TraesCS6D01G193100 chr5D 92.798 486 32 2 1413 1895 531971717 531971232 0.000000e+00 701.0
23 TraesCS6D01G193100 chr5D 89.212 482 19 11 2391 2868 43387466 43387014 3.240000e-159 571.0
24 TraesCS6D01G193100 chr5D 86.296 467 43 11 1424 1872 531901300 531900837 3.350000e-134 488.0
25 TraesCS6D01G193100 chr5D 91.228 228 18 2 2154 2380 43387895 43387669 2.800000e-80 309.0
26 TraesCS6D01G193100 chr5D 91.971 137 11 0 1017 1153 531902146 531902010 2.940000e-45 193.0
27 TraesCS6D01G193100 chr5D 80.738 244 40 7 61 299 451618175 451618416 1.770000e-42 183.0
28 TraesCS6D01G193100 chr5D 90.511 137 13 0 1017 1153 531971915 531971779 6.370000e-42 182.0
29 TraesCS6D01G193100 chr5D 100.000 28 0 0 1 28 377856836 377856863 5.000000e-03 52.8
30 TraesCS6D01G193100 chr7B 93.111 479 18 7 2391 2865 41306445 41306912 0.000000e+00 688.0
31 TraesCS6D01G193100 chr5B 93.133 466 29 2 1433 1895 671188131 671187666 0.000000e+00 680.0
32 TraesCS6D01G193100 chr5B 86.813 273 36 0 1427 1699 671131612 671131340 3.630000e-79 305.0
33 TraesCS6D01G193100 chr5B 92.701 137 10 0 1017 1153 671138053 671137917 6.330000e-47 198.0
34 TraesCS6D01G193100 chr5B 91.852 135 11 0 1019 1153 671188342 671188208 3.810000e-44 189.0
35 TraesCS6D01G193100 chr2B 91.789 475 29 5 2393 2863 423811622 423811154 0.000000e+00 652.0
36 TraesCS6D01G193100 chr2B 91.153 373 21 4 2392 2764 641082008 641082368 2.000000e-136 496.0
37 TraesCS6D01G193100 chr7D 88.842 475 34 5 2391 2865 6882778 6882323 1.510000e-157 566.0
38 TraesCS6D01G193100 chr7D 87.076 472 49 6 2391 2862 454325285 454325744 9.190000e-145 523.0
39 TraesCS6D01G193100 chr7D 94.690 226 12 0 2154 2379 6883185 6882960 4.590000e-93 351.0
40 TraesCS6D01G193100 chr7D 94.248 226 10 2 2154 2379 454324881 454325103 2.760000e-90 342.0
41 TraesCS6D01G193100 chr2D 87.898 471 46 6 2391 2861 94457413 94456954 7.060000e-151 544.0
42 TraesCS6D01G193100 chr2D 93.805 226 12 1 2154 2379 94457822 94457599 3.570000e-89 339.0
43 TraesCS6D01G193100 chr2D 80.800 250 41 7 61 304 618294542 618294790 3.810000e-44 189.0
44 TraesCS6D01G193100 chr2A 90.155 386 20 6 2391 2772 482758973 482758602 1.210000e-133 486.0
45 TraesCS6D01G193100 chr2A 92.070 227 18 0 2154 2380 482759384 482759158 1.290000e-83 320.0
46 TraesCS6D01G193100 chr1D 86.990 392 44 5 2391 2782 28020414 28020798 4.430000e-118 435.0
47 TraesCS6D01G193100 chr1D 92.035 226 16 1 2154 2379 28020009 28020232 1.670000e-82 316.0
48 TraesCS6D01G193100 chr1D 93.258 89 2 1 2779 2867 28020925 28021009 8.420000e-26 128.0
49 TraesCS6D01G193100 chrUn 87.665 227 28 0 2154 2380 73631044 73631270 6.150000e-67 265.0
50 TraesCS6D01G193100 chrUn 80.932 236 39 6 72 302 8168795 8169029 6.370000e-42 182.0
51 TraesCS6D01G193100 chr3A 79.322 295 56 5 1 293 586567552 586567843 4.890000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G193100 chr6D 267235834 267238729 2895 True 5349.00 5349 100.0000 1 2896 1 chr6D.!!$R1 2895
1 TraesCS6D01G193100 chr6D 267514717 267515402 685 True 521.50 848 95.7690 1017 1895 2 chr6D.!!$R3 878
2 TraesCS6D01G193100 chr6D 9461926 9462776 850 True 426.00 536 90.1675 2154 2842 2 chr6D.!!$R2 688
3 TraesCS6D01G193100 chr6A 380361010 380362608 1598 True 1220.60 2381 96.9925 510 2153 2 chr6A.!!$R1 1643
4 TraesCS6D01G193100 chr6A 381025631 381026350 719 True 524.00 850 94.6870 1017 1923 2 chr6A.!!$R2 906
5 TraesCS6D01G193100 chr6B 415788856 415790401 1545 True 1087.65 2104 93.7250 536 2098 2 chr6B.!!$R3 1562
6 TraesCS6D01G193100 chr6B 415863656 415864360 704 True 524.50 845 95.8945 1024 1923 2 chr6B.!!$R4 899
7 TraesCS6D01G193100 chr5D 531971232 531971915 683 True 441.50 701 91.6545 1017 1895 2 chr5D.!!$R3 878
8 TraesCS6D01G193100 chr5D 43387014 43387895 881 True 440.00 571 90.2200 2154 2868 2 chr5D.!!$R1 714
9 TraesCS6D01G193100 chr5D 531900837 531902146 1309 True 340.50 488 89.1335 1017 1872 2 chr5D.!!$R2 855
10 TraesCS6D01G193100 chr5B 671187666 671188342 676 True 434.50 680 92.4925 1019 1895 2 chr5B.!!$R3 876
11 TraesCS6D01G193100 chr7D 6882323 6883185 862 True 458.50 566 91.7660 2154 2865 2 chr7D.!!$R1 711
12 TraesCS6D01G193100 chr7D 454324881 454325744 863 False 432.50 523 90.6620 2154 2862 2 chr7D.!!$F1 708
13 TraesCS6D01G193100 chr2D 94456954 94457822 868 True 441.50 544 90.8515 2154 2861 2 chr2D.!!$R1 707
14 TraesCS6D01G193100 chr2A 482758602 482759384 782 True 403.00 486 91.1125 2154 2772 2 chr2A.!!$R1 618
15 TraesCS6D01G193100 chr1D 28020009 28021009 1000 False 293.00 435 90.7610 2154 2867 3 chr1D.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 955 0.03309 AGAGCAAAGCCAAGCAAAGC 59.967 50.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2609 0.034337 ATCCGTACAGTTTGCACCGT 59.966 50.0 0.0 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.990066 GATGGTTAGGAGGACAGTGG 57.010 55.000 0.00 0.00 0.00 4.00
20 21 2.188817 GATGGTTAGGAGGACAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
21 22 3.371965 GATGGTTAGGAGGACAGTGGTA 58.628 50.000 0.00 0.00 0.00 3.25
22 23 2.532843 TGGTTAGGAGGACAGTGGTAC 58.467 52.381 0.00 0.00 0.00 3.34
23 24 1.829849 GGTTAGGAGGACAGTGGTACC 59.170 57.143 4.43 4.43 0.00 3.34
24 25 1.829849 GTTAGGAGGACAGTGGTACCC 59.170 57.143 10.07 0.32 0.00 3.69
25 26 0.337428 TAGGAGGACAGTGGTACCCC 59.663 60.000 10.07 2.34 0.00 4.95
26 27 1.993948 GGAGGACAGTGGTACCCCC 60.994 68.421 10.07 0.00 0.00 5.40
50 51 3.449746 CCACCAGGGTTCAAATCCTAA 57.550 47.619 0.00 0.00 37.45 2.69
51 52 3.089284 CCACCAGGGTTCAAATCCTAAC 58.911 50.000 0.00 0.00 37.45 2.34
52 53 3.089284 CACCAGGGTTCAAATCCTAACC 58.911 50.000 0.00 0.00 37.45 2.85
53 54 2.993863 ACCAGGGTTCAAATCCTAACCT 59.006 45.455 0.00 0.00 43.87 3.50
54 55 3.401342 ACCAGGGTTCAAATCCTAACCTT 59.599 43.478 0.00 0.00 43.87 3.50
55 56 3.763897 CCAGGGTTCAAATCCTAACCTTG 59.236 47.826 8.83 8.83 46.76 3.61
57 58 4.663334 AGGGTTCAAATCCTAACCTTGAC 58.337 43.478 0.00 0.00 43.87 3.18
58 59 4.105697 AGGGTTCAAATCCTAACCTTGACA 59.894 41.667 0.00 0.00 43.87 3.58
59 60 5.016831 GGGTTCAAATCCTAACCTTGACAT 58.983 41.667 0.00 0.00 43.87 3.06
60 61 5.480422 GGGTTCAAATCCTAACCTTGACATT 59.520 40.000 0.00 0.00 43.87 2.71
61 62 6.389906 GGTTCAAATCCTAACCTTGACATTG 58.610 40.000 0.00 0.00 41.63 2.82
62 63 6.208599 GGTTCAAATCCTAACCTTGACATTGA 59.791 38.462 0.00 0.00 41.63 2.57
63 64 7.093771 GGTTCAAATCCTAACCTTGACATTGAT 60.094 37.037 0.00 0.00 41.63 2.57
64 65 7.395190 TCAAATCCTAACCTTGACATTGATG 57.605 36.000 0.00 0.00 0.00 3.07
65 66 5.841957 AATCCTAACCTTGACATTGATGC 57.158 39.130 0.00 0.00 0.00 3.91
66 67 4.574674 TCCTAACCTTGACATTGATGCT 57.425 40.909 0.00 0.00 0.00 3.79
67 68 4.517285 TCCTAACCTTGACATTGATGCTC 58.483 43.478 0.00 0.00 0.00 4.26
68 69 4.019411 TCCTAACCTTGACATTGATGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
69 70 4.095483 CCTAACCTTGACATTGATGCTCAC 59.905 45.833 0.00 0.00 0.00 3.51
70 71 3.144657 ACCTTGACATTGATGCTCACA 57.855 42.857 0.00 0.00 0.00 3.58
71 72 3.693807 ACCTTGACATTGATGCTCACAT 58.306 40.909 0.00 0.00 39.98 3.21
72 73 4.084287 ACCTTGACATTGATGCTCACATT 58.916 39.130 0.00 0.00 36.35 2.71
73 74 5.255687 ACCTTGACATTGATGCTCACATTA 58.744 37.500 0.00 0.00 36.35 1.90
74 75 5.889853 ACCTTGACATTGATGCTCACATTAT 59.110 36.000 0.00 0.00 36.35 1.28
75 76 6.379133 ACCTTGACATTGATGCTCACATTATT 59.621 34.615 0.00 0.00 36.35 1.40
76 77 6.916387 CCTTGACATTGATGCTCACATTATTC 59.084 38.462 0.00 0.00 36.35 1.75
77 78 6.381481 TGACATTGATGCTCACATTATTCC 57.619 37.500 0.00 0.00 36.35 3.01
78 79 6.124340 TGACATTGATGCTCACATTATTCCT 58.876 36.000 0.00 0.00 36.35 3.36
79 80 6.038936 TGACATTGATGCTCACATTATTCCTG 59.961 38.462 0.00 0.00 36.35 3.86
80 81 5.301045 ACATTGATGCTCACATTATTCCTGG 59.699 40.000 0.00 0.00 36.35 4.45
81 82 4.776435 TGATGCTCACATTATTCCTGGA 57.224 40.909 0.00 0.00 36.35 3.86
82 83 5.314718 TGATGCTCACATTATTCCTGGAT 57.685 39.130 0.00 0.00 36.35 3.41
83 84 5.698104 TGATGCTCACATTATTCCTGGATT 58.302 37.500 0.00 0.00 36.35 3.01
84 85 6.131264 TGATGCTCACATTATTCCTGGATTT 58.869 36.000 0.00 0.00 36.35 2.17
85 86 7.289310 TGATGCTCACATTATTCCTGGATTTA 58.711 34.615 0.00 0.00 36.35 1.40
86 87 7.946219 TGATGCTCACATTATTCCTGGATTTAT 59.054 33.333 0.00 0.00 36.35 1.40
87 88 8.716674 ATGCTCACATTATTCCTGGATTTATT 57.283 30.769 0.00 0.00 30.07 1.40
88 89 8.169977 TGCTCACATTATTCCTGGATTTATTC 57.830 34.615 0.00 0.00 0.00 1.75
89 90 7.231317 TGCTCACATTATTCCTGGATTTATTCC 59.769 37.037 0.00 0.00 45.69 3.01
99 100 3.208747 GGATTTATTCCAGGCTTCCGA 57.791 47.619 0.00 0.00 44.74 4.55
100 101 2.879026 GGATTTATTCCAGGCTTCCGAC 59.121 50.000 0.00 0.00 44.74 4.79
101 102 2.018542 TTTATTCCAGGCTTCCGACG 57.981 50.000 0.00 0.00 0.00 5.12
102 103 1.187974 TTATTCCAGGCTTCCGACGA 58.812 50.000 0.00 0.00 0.00 4.20
103 104 1.410004 TATTCCAGGCTTCCGACGAT 58.590 50.000 0.00 0.00 0.00 3.73
104 105 0.179073 ATTCCAGGCTTCCGACGATG 60.179 55.000 0.00 0.00 0.00 3.84
105 106 1.541310 TTCCAGGCTTCCGACGATGT 61.541 55.000 0.00 0.00 0.00 3.06
106 107 1.079127 CCAGGCTTCCGACGATGTT 60.079 57.895 0.00 0.00 0.00 2.71
107 108 1.084370 CCAGGCTTCCGACGATGTTC 61.084 60.000 0.00 0.00 0.00 3.18
108 109 1.153823 AGGCTTCCGACGATGTTCG 60.154 57.895 0.00 0.00 46.93 3.95
120 121 3.295553 CGATGTTCGTTCAATGAGAGC 57.704 47.619 0.00 0.00 34.72 4.09
126 127 1.645034 CGTTCAATGAGAGCGGATGT 58.355 50.000 0.00 0.00 45.72 3.06
127 128 2.002586 CGTTCAATGAGAGCGGATGTT 58.997 47.619 0.00 0.00 45.72 2.71
128 129 2.416547 CGTTCAATGAGAGCGGATGTTT 59.583 45.455 0.00 0.00 45.72 2.83
129 130 3.120199 CGTTCAATGAGAGCGGATGTTTT 60.120 43.478 0.00 0.00 45.72 2.43
130 131 4.613622 CGTTCAATGAGAGCGGATGTTTTT 60.614 41.667 0.00 0.00 45.72 1.94
131 132 4.424061 TCAATGAGAGCGGATGTTTTTG 57.576 40.909 0.00 0.00 0.00 2.44
132 133 3.820467 TCAATGAGAGCGGATGTTTTTGT 59.180 39.130 0.00 0.00 0.00 2.83
133 134 4.083324 TCAATGAGAGCGGATGTTTTTGTC 60.083 41.667 0.00 0.00 0.00 3.18
134 135 1.798223 TGAGAGCGGATGTTTTTGTCG 59.202 47.619 0.00 0.00 0.00 4.35
135 136 2.066262 GAGAGCGGATGTTTTTGTCGA 58.934 47.619 0.00 0.00 0.00 4.20
136 137 1.798813 AGAGCGGATGTTTTTGTCGAC 59.201 47.619 9.11 9.11 0.00 4.20
137 138 1.529438 GAGCGGATGTTTTTGTCGACA 59.471 47.619 15.76 15.76 0.00 4.35
138 139 1.944024 AGCGGATGTTTTTGTCGACAA 59.056 42.857 26.53 26.53 0.00 3.18
139 140 2.041244 GCGGATGTTTTTGTCGACAAC 58.959 47.619 29.74 19.87 35.28 3.32
140 141 2.294829 CGGATGTTTTTGTCGACAACG 58.705 47.619 29.74 22.53 35.28 4.10
141 142 2.285950 CGGATGTTTTTGTCGACAACGT 60.286 45.455 29.74 20.41 40.69 3.99
142 143 3.033185 GGATGTTTTTGTCGACAACGTG 58.967 45.455 29.74 0.00 40.69 4.49
143 144 2.529136 TGTTTTTGTCGACAACGTGG 57.471 45.000 29.74 0.00 40.69 4.94
144 145 1.805345 TGTTTTTGTCGACAACGTGGT 59.195 42.857 29.74 0.00 40.69 4.16
145 146 2.170770 GTTTTTGTCGACAACGTGGTG 58.829 47.619 29.74 0.00 40.69 4.17
146 147 0.097325 TTTTGTCGACAACGTGGTGC 59.903 50.000 29.74 0.00 40.69 5.01
147 148 0.741574 TTTGTCGACAACGTGGTGCT 60.742 50.000 29.74 0.00 40.69 4.40
148 149 0.741574 TTGTCGACAACGTGGTGCTT 60.742 50.000 26.53 0.00 40.69 3.91
149 150 1.275657 GTCGACAACGTGGTGCTTG 59.724 57.895 11.55 0.00 40.69 4.01
150 151 1.153529 TCGACAACGTGGTGCTTGT 60.154 52.632 0.00 0.00 40.69 3.16
151 152 1.011242 CGACAACGTGGTGCTTGTG 60.011 57.895 0.00 0.00 30.59 3.33
152 153 1.355210 GACAACGTGGTGCTTGTGG 59.645 57.895 0.00 0.00 30.59 4.17
153 154 1.373590 GACAACGTGGTGCTTGTGGT 61.374 55.000 0.00 0.00 30.59 4.16
154 155 1.063972 CAACGTGGTGCTTGTGGTG 59.936 57.895 0.00 0.00 0.00 4.17
155 156 1.078072 AACGTGGTGCTTGTGGTGA 60.078 52.632 0.00 0.00 0.00 4.02
156 157 0.465460 AACGTGGTGCTTGTGGTGAT 60.465 50.000 0.00 0.00 0.00 3.06
157 158 0.465460 ACGTGGTGCTTGTGGTGATT 60.465 50.000 0.00 0.00 0.00 2.57
158 159 0.667993 CGTGGTGCTTGTGGTGATTT 59.332 50.000 0.00 0.00 0.00 2.17
159 160 1.334960 CGTGGTGCTTGTGGTGATTTC 60.335 52.381 0.00 0.00 0.00 2.17
160 161 0.950836 TGGTGCTTGTGGTGATTTCG 59.049 50.000 0.00 0.00 0.00 3.46
161 162 0.951558 GGTGCTTGTGGTGATTTCGT 59.048 50.000 0.00 0.00 0.00 3.85
162 163 2.147958 GGTGCTTGTGGTGATTTCGTA 58.852 47.619 0.00 0.00 0.00 3.43
163 164 2.550606 GGTGCTTGTGGTGATTTCGTAA 59.449 45.455 0.00 0.00 0.00 3.18
164 165 3.003897 GGTGCTTGTGGTGATTTCGTAAA 59.996 43.478 0.00 0.00 0.00 2.01
165 166 4.320935 GGTGCTTGTGGTGATTTCGTAAAT 60.321 41.667 0.00 0.00 0.00 1.40
166 167 5.219633 GTGCTTGTGGTGATTTCGTAAATT 58.780 37.500 0.00 0.00 0.00 1.82
167 168 5.342259 GTGCTTGTGGTGATTTCGTAAATTC 59.658 40.000 0.00 0.00 0.00 2.17
168 169 5.009110 TGCTTGTGGTGATTTCGTAAATTCA 59.991 36.000 0.00 0.00 0.00 2.57
169 170 5.918011 GCTTGTGGTGATTTCGTAAATTCAA 59.082 36.000 0.00 0.00 0.00 2.69
170 171 6.088085 GCTTGTGGTGATTTCGTAAATTCAAG 59.912 38.462 0.00 0.00 0.00 3.02
171 172 6.869315 TGTGGTGATTTCGTAAATTCAAGA 57.131 33.333 0.00 0.00 0.00 3.02
172 173 7.447374 TGTGGTGATTTCGTAAATTCAAGAT 57.553 32.000 0.00 0.00 0.00 2.40
173 174 7.526608 TGTGGTGATTTCGTAAATTCAAGATC 58.473 34.615 0.00 0.00 0.00 2.75
174 175 7.174080 TGTGGTGATTTCGTAAATTCAAGATCA 59.826 33.333 0.00 0.00 0.00 2.92
175 176 8.184192 GTGGTGATTTCGTAAATTCAAGATCAT 58.816 33.333 0.00 0.00 0.00 2.45
176 177 9.389755 TGGTGATTTCGTAAATTCAAGATCATA 57.610 29.630 0.00 0.00 0.00 2.15
183 184 8.407457 TCGTAAATTCAAGATCATATATCGGC 57.593 34.615 0.00 0.00 0.00 5.54
184 185 8.251026 TCGTAAATTCAAGATCATATATCGGCT 58.749 33.333 0.00 0.00 0.00 5.52
185 186 8.535592 CGTAAATTCAAGATCATATATCGGCTC 58.464 37.037 0.00 0.00 0.00 4.70
186 187 9.371136 GTAAATTCAAGATCATATATCGGCTCA 57.629 33.333 0.00 0.00 0.00 4.26
187 188 8.489990 AAATTCAAGATCATATATCGGCTCAG 57.510 34.615 0.00 0.00 0.00 3.35
188 189 6.596309 TTCAAGATCATATATCGGCTCAGT 57.404 37.500 0.00 0.00 0.00 3.41
189 190 6.201226 TCAAGATCATATATCGGCTCAGTC 57.799 41.667 0.00 0.00 0.00 3.51
190 191 5.948758 TCAAGATCATATATCGGCTCAGTCT 59.051 40.000 0.00 0.00 0.00 3.24
191 192 6.094742 TCAAGATCATATATCGGCTCAGTCTC 59.905 42.308 0.00 0.00 0.00 3.36
192 193 5.754782 AGATCATATATCGGCTCAGTCTCT 58.245 41.667 0.00 0.00 0.00 3.10
193 194 6.894682 AGATCATATATCGGCTCAGTCTCTA 58.105 40.000 0.00 0.00 0.00 2.43
194 195 6.992123 AGATCATATATCGGCTCAGTCTCTAG 59.008 42.308 0.00 0.00 0.00 2.43
195 196 5.432645 TCATATATCGGCTCAGTCTCTAGG 58.567 45.833 0.00 0.00 0.00 3.02
196 197 5.189934 TCATATATCGGCTCAGTCTCTAGGA 59.810 44.000 0.00 0.00 0.00 2.94
197 198 2.270352 ATCGGCTCAGTCTCTAGGAG 57.730 55.000 0.00 0.00 0.00 3.69
198 199 0.181587 TCGGCTCAGTCTCTAGGAGG 59.818 60.000 0.00 0.00 0.00 4.30
199 200 0.106918 CGGCTCAGTCTCTAGGAGGT 60.107 60.000 0.00 0.00 0.00 3.85
200 201 1.398692 GGCTCAGTCTCTAGGAGGTG 58.601 60.000 0.00 0.00 0.00 4.00
201 202 0.744281 GCTCAGTCTCTAGGAGGTGC 59.256 60.000 0.00 0.00 0.00 5.01
202 203 1.684869 GCTCAGTCTCTAGGAGGTGCT 60.685 57.143 0.00 0.00 0.00 4.40
203 204 2.297701 CTCAGTCTCTAGGAGGTGCTC 58.702 57.143 0.00 0.00 0.00 4.26
204 205 1.636003 TCAGTCTCTAGGAGGTGCTCA 59.364 52.381 0.00 0.00 31.08 4.26
205 206 2.243478 TCAGTCTCTAGGAGGTGCTCAT 59.757 50.000 0.00 0.00 31.08 2.90
206 207 3.459969 TCAGTCTCTAGGAGGTGCTCATA 59.540 47.826 0.00 0.00 31.08 2.15
207 208 4.079730 TCAGTCTCTAGGAGGTGCTCATAA 60.080 45.833 0.00 0.00 31.08 1.90
208 209 4.278170 CAGTCTCTAGGAGGTGCTCATAAG 59.722 50.000 0.00 0.00 31.08 1.73
219 220 1.571919 GCTCATAAGCGTAGGGTGTG 58.428 55.000 0.00 0.00 39.10 3.82
220 221 1.571919 CTCATAAGCGTAGGGTGTGC 58.428 55.000 0.00 0.00 0.00 4.57
221 222 0.179121 TCATAAGCGTAGGGTGTGCG 60.179 55.000 0.00 0.00 37.32 5.34
222 223 0.459585 CATAAGCGTAGGGTGTGCGT 60.460 55.000 0.00 0.00 36.50 5.24
223 224 0.459585 ATAAGCGTAGGGTGTGCGTG 60.460 55.000 0.00 0.00 36.50 5.34
224 225 1.808531 TAAGCGTAGGGTGTGCGTGT 61.809 55.000 0.00 0.00 36.50 4.49
225 226 3.411351 GCGTAGGGTGTGCGTGTG 61.411 66.667 0.00 0.00 36.50 3.82
226 227 2.028484 CGTAGGGTGTGCGTGTGT 59.972 61.111 0.00 0.00 0.00 3.72
227 228 2.307309 CGTAGGGTGTGCGTGTGTG 61.307 63.158 0.00 0.00 0.00 3.82
228 229 1.227438 GTAGGGTGTGCGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
229 230 1.227409 TAGGGTGTGCGTGTGTGTG 60.227 57.895 0.00 0.00 0.00 3.82
230 231 1.962321 TAGGGTGTGCGTGTGTGTGT 61.962 55.000 0.00 0.00 0.00 3.72
231 232 2.403378 GGGTGTGCGTGTGTGTGTT 61.403 57.895 0.00 0.00 0.00 3.32
232 233 1.061887 GGTGTGCGTGTGTGTGTTC 59.938 57.895 0.00 0.00 0.00 3.18
233 234 1.640210 GGTGTGCGTGTGTGTGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
234 235 0.376852 GTGTGCGTGTGTGTGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
235 236 1.595328 GTGTGCGTGTGTGTGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
236 237 1.864082 TGTGCGTGTGTGTGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
237 238 1.194547 GTGCGTGTGTGTGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
238 239 0.796312 GCGTGTGTGTGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
239 240 1.438651 CGTGTGTGTGTTCATAGGGG 58.561 55.000 0.00 0.00 0.00 4.79
240 241 1.270625 CGTGTGTGTGTTCATAGGGGT 60.271 52.381 0.00 0.00 0.00 4.95
241 242 2.151202 GTGTGTGTGTTCATAGGGGTG 58.849 52.381 0.00 0.00 0.00 4.61
242 243 2.050918 TGTGTGTGTTCATAGGGGTGA 58.949 47.619 0.00 0.00 0.00 4.02
243 244 2.439880 TGTGTGTGTTCATAGGGGTGAA 59.560 45.455 0.00 0.00 35.84 3.18
244 245 3.073798 TGTGTGTGTTCATAGGGGTGAAT 59.926 43.478 0.00 0.00 39.99 2.57
245 246 3.440173 GTGTGTGTTCATAGGGGTGAATG 59.560 47.826 0.00 0.00 39.99 2.67
246 247 3.073798 TGTGTGTTCATAGGGGTGAATGT 59.926 43.478 0.00 0.00 39.99 2.71
247 248 4.287326 TGTGTGTTCATAGGGGTGAATGTA 59.713 41.667 0.00 0.00 39.99 2.29
248 249 5.045213 TGTGTGTTCATAGGGGTGAATGTAT 60.045 40.000 0.00 0.00 39.99 2.29
249 250 5.296780 GTGTGTTCATAGGGGTGAATGTATG 59.703 44.000 0.00 0.00 39.99 2.39
250 251 4.275936 GTGTTCATAGGGGTGAATGTATGC 59.724 45.833 0.00 0.00 39.99 3.14
251 252 4.165950 TGTTCATAGGGGTGAATGTATGCT 59.834 41.667 0.00 0.00 39.99 3.79
252 253 4.623932 TCATAGGGGTGAATGTATGCTC 57.376 45.455 0.00 0.00 0.00 4.26
253 254 3.006859 TCATAGGGGTGAATGTATGCTCG 59.993 47.826 0.00 0.00 0.00 5.03
254 255 1.204146 AGGGGTGAATGTATGCTCGT 58.796 50.000 0.00 0.00 0.00 4.18
255 256 1.134401 AGGGGTGAATGTATGCTCGTG 60.134 52.381 0.00 0.00 0.00 4.35
256 257 1.406887 GGGGTGAATGTATGCTCGTGT 60.407 52.381 0.00 0.00 0.00 4.49
257 258 2.159014 GGGGTGAATGTATGCTCGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
258 259 3.494398 GGGGTGAATGTATGCTCGTGTAT 60.494 47.826 0.00 0.00 0.00 2.29
259 260 3.494626 GGGTGAATGTATGCTCGTGTATG 59.505 47.826 0.00 0.00 0.00 2.39
260 261 4.119862 GGTGAATGTATGCTCGTGTATGT 58.880 43.478 0.00 0.00 0.00 2.29
261 262 4.025730 GGTGAATGTATGCTCGTGTATGTG 60.026 45.833 0.00 0.00 0.00 3.21
262 263 4.803613 GTGAATGTATGCTCGTGTATGTGA 59.196 41.667 0.00 0.00 0.00 3.58
263 264 5.043248 TGAATGTATGCTCGTGTATGTGAG 58.957 41.667 0.00 0.00 35.30 3.51
264 265 4.655762 ATGTATGCTCGTGTATGTGAGT 57.344 40.909 0.00 0.00 34.67 3.41
265 266 3.769536 TGTATGCTCGTGTATGTGAGTG 58.230 45.455 0.00 0.00 34.67 3.51
266 267 3.442273 TGTATGCTCGTGTATGTGAGTGA 59.558 43.478 0.00 0.00 34.67 3.41
267 268 2.347697 TGCTCGTGTATGTGAGTGAC 57.652 50.000 0.00 0.00 34.67 3.67
268 269 1.886542 TGCTCGTGTATGTGAGTGACT 59.113 47.619 0.00 0.00 34.67 3.41
269 270 2.296190 TGCTCGTGTATGTGAGTGACTT 59.704 45.455 0.00 0.00 34.67 3.01
270 271 2.917971 GCTCGTGTATGTGAGTGACTTC 59.082 50.000 0.00 0.00 34.67 3.01
271 272 3.164358 CTCGTGTATGTGAGTGACTTCG 58.836 50.000 0.00 0.00 0.00 3.79
272 273 2.809696 TCGTGTATGTGAGTGACTTCGA 59.190 45.455 0.00 0.00 0.00 3.71
273 274 3.439129 TCGTGTATGTGAGTGACTTCGAT 59.561 43.478 0.00 0.00 0.00 3.59
274 275 4.082949 TCGTGTATGTGAGTGACTTCGATT 60.083 41.667 0.00 0.00 0.00 3.34
275 276 4.030641 CGTGTATGTGAGTGACTTCGATTG 59.969 45.833 0.00 0.00 0.00 2.67
276 277 4.923871 GTGTATGTGAGTGACTTCGATTGT 59.076 41.667 0.00 0.00 0.00 2.71
277 278 6.090783 GTGTATGTGAGTGACTTCGATTGTA 58.909 40.000 0.00 0.00 0.00 2.41
278 279 6.752351 GTGTATGTGAGTGACTTCGATTGTAT 59.248 38.462 0.00 0.00 0.00 2.29
279 280 7.275779 GTGTATGTGAGTGACTTCGATTGTATT 59.724 37.037 0.00 0.00 0.00 1.89
280 281 8.463607 TGTATGTGAGTGACTTCGATTGTATTA 58.536 33.333 0.00 0.00 0.00 0.98
281 282 9.464714 GTATGTGAGTGACTTCGATTGTATTAT 57.535 33.333 0.00 0.00 0.00 1.28
282 283 7.755582 TGTGAGTGACTTCGATTGTATTATG 57.244 36.000 0.00 0.00 0.00 1.90
283 284 7.320399 TGTGAGTGACTTCGATTGTATTATGT 58.680 34.615 0.00 0.00 0.00 2.29
284 285 7.817478 TGTGAGTGACTTCGATTGTATTATGTT 59.183 33.333 0.00 0.00 0.00 2.71
285 286 8.321716 GTGAGTGACTTCGATTGTATTATGTTC 58.678 37.037 0.00 0.00 0.00 3.18
286 287 8.032451 TGAGTGACTTCGATTGTATTATGTTCA 58.968 33.333 0.00 0.00 0.00 3.18
287 288 8.186178 AGTGACTTCGATTGTATTATGTTCAC 57.814 34.615 0.00 0.00 0.00 3.18
288 289 7.817478 AGTGACTTCGATTGTATTATGTTCACA 59.183 33.333 0.00 0.00 0.00 3.58
289 290 8.440059 GTGACTTCGATTGTATTATGTTCACAA 58.560 33.333 0.00 0.00 36.66 3.33
290 291 8.994170 TGACTTCGATTGTATTATGTTCACAAA 58.006 29.630 0.00 0.00 35.91 2.83
291 292 9.820229 GACTTCGATTGTATTATGTTCACAAAA 57.180 29.630 0.00 0.00 35.91 2.44
307 308 9.304731 TGTTCACAAAAATCTGAGAAGAATTTG 57.695 29.630 12.24 12.24 36.07 2.32
308 309 7.935338 TCACAAAAATCTGAGAAGAATTTGC 57.065 32.000 13.13 0.00 34.70 3.68
309 310 7.490840 TCACAAAAATCTGAGAAGAATTTGCA 58.509 30.769 13.13 0.00 34.70 4.08
310 311 7.436080 TCACAAAAATCTGAGAAGAATTTGCAC 59.564 33.333 13.13 0.00 34.70 4.57
311 312 7.223193 CACAAAAATCTGAGAAGAATTTGCACA 59.777 33.333 13.13 0.00 34.70 4.57
312 313 7.437267 ACAAAAATCTGAGAAGAATTTGCACAG 59.563 33.333 13.13 0.00 34.70 3.66
313 314 6.889301 AAATCTGAGAAGAATTTGCACAGA 57.111 33.333 0.00 0.00 37.33 3.41
314 315 7.463961 AAATCTGAGAAGAATTTGCACAGAT 57.536 32.000 0.00 0.00 42.69 2.90
315 316 6.680874 ATCTGAGAAGAATTTGCACAGATC 57.319 37.500 0.00 0.00 38.64 2.75
316 317 5.802465 TCTGAGAAGAATTTGCACAGATCT 58.198 37.500 0.00 0.00 0.00 2.75
317 318 5.873712 TCTGAGAAGAATTTGCACAGATCTC 59.126 40.000 0.00 0.00 34.19 2.75
318 319 5.554070 TGAGAAGAATTTGCACAGATCTCA 58.446 37.500 10.39 10.39 39.59 3.27
319 320 5.999600 TGAGAAGAATTTGCACAGATCTCAA 59.000 36.000 11.50 0.00 39.11 3.02
320 321 6.487668 TGAGAAGAATTTGCACAGATCTCAAA 59.512 34.615 9.70 9.70 39.11 2.69
321 322 7.176165 TGAGAAGAATTTGCACAGATCTCAAAT 59.824 33.333 12.72 12.72 39.11 2.32
322 323 7.893658 AGAAGAATTTGCACAGATCTCAAATT 58.106 30.769 23.42 23.42 46.70 1.82
323 324 9.017509 AGAAGAATTTGCACAGATCTCAAATTA 57.982 29.630 23.31 2.23 45.13 1.40
324 325 9.630098 GAAGAATTTGCACAGATCTCAAATTAA 57.370 29.630 23.31 4.95 45.13 1.40
325 326 9.635520 AAGAATTTGCACAGATCTCAAATTAAG 57.364 29.630 23.31 3.05 45.13 1.85
326 327 9.017509 AGAATTTGCACAGATCTCAAATTAAGA 57.982 29.630 23.31 1.10 45.13 2.10
327 328 9.798994 GAATTTGCACAGATCTCAAATTAAGAT 57.201 29.630 23.31 9.81 45.13 2.40
328 329 9.798994 AATTTGCACAGATCTCAAATTAAGATC 57.201 29.630 22.54 17.24 44.06 2.75
348 349 8.800370 AAGATCTCACTAATATAGCATCGAGA 57.200 34.615 0.00 0.00 33.18 4.04
349 350 8.208718 AGATCTCACTAATATAGCATCGAGAC 57.791 38.462 0.00 0.00 31.57 3.36
350 351 7.826744 AGATCTCACTAATATAGCATCGAGACA 59.173 37.037 0.00 0.00 31.57 3.41
351 352 7.929941 TCTCACTAATATAGCATCGAGACAT 57.070 36.000 0.00 0.00 0.00 3.06
352 353 9.620259 ATCTCACTAATATAGCATCGAGACATA 57.380 33.333 0.00 0.00 31.57 2.29
353 354 9.449719 TCTCACTAATATAGCATCGAGACATAA 57.550 33.333 0.00 0.00 0.00 1.90
354 355 9.497030 CTCACTAATATAGCATCGAGACATAAC 57.503 37.037 0.00 0.00 0.00 1.89
355 356 9.232473 TCACTAATATAGCATCGAGACATAACT 57.768 33.333 0.00 0.00 0.00 2.24
365 366 8.634444 AGCATCGAGACATAACTAAATCTTAGT 58.366 33.333 0.00 0.00 0.00 2.24
366 367 8.907685 GCATCGAGACATAACTAAATCTTAGTC 58.092 37.037 0.00 0.00 0.00 2.59
367 368 9.108449 CATCGAGACATAACTAAATCTTAGTCG 57.892 37.037 0.00 0.00 0.00 4.18
368 369 8.429493 TCGAGACATAACTAAATCTTAGTCGA 57.571 34.615 0.00 1.17 0.00 4.20
369 370 9.053840 TCGAGACATAACTAAATCTTAGTCGAT 57.946 33.333 0.00 0.00 0.00 3.59
370 371 9.666626 CGAGACATAACTAAATCTTAGTCGATT 57.333 33.333 0.00 0.00 35.23 3.34
407 408 8.819643 AAATATTAGTCGACTGAGATTTAGCC 57.180 34.615 30.16 0.00 33.52 3.93
408 409 5.854010 ATTAGTCGACTGAGATTTAGCCA 57.146 39.130 28.12 0.00 0.00 4.75
409 410 3.791973 AGTCGACTGAGATTTAGCCAG 57.208 47.619 19.30 0.00 0.00 4.85
410 411 3.357203 AGTCGACTGAGATTTAGCCAGA 58.643 45.455 19.30 0.00 0.00 3.86
411 412 3.129638 AGTCGACTGAGATTTAGCCAGAC 59.870 47.826 19.30 0.00 0.00 3.51
412 413 3.129638 GTCGACTGAGATTTAGCCAGACT 59.870 47.826 8.70 0.00 0.00 3.24
413 414 3.129462 TCGACTGAGATTTAGCCAGACTG 59.871 47.826 0.00 0.00 0.00 3.51
414 415 3.129462 CGACTGAGATTTAGCCAGACTGA 59.871 47.826 3.32 0.00 0.00 3.41
415 416 4.429108 GACTGAGATTTAGCCAGACTGAC 58.571 47.826 3.32 0.00 0.00 3.51
416 417 3.834813 ACTGAGATTTAGCCAGACTGACA 59.165 43.478 3.32 0.00 0.00 3.58
417 418 4.284490 ACTGAGATTTAGCCAGACTGACAA 59.716 41.667 3.32 0.00 0.00 3.18
418 419 5.221722 ACTGAGATTTAGCCAGACTGACAAA 60.222 40.000 3.32 1.57 0.00 2.83
419 420 5.809001 TGAGATTTAGCCAGACTGACAAAT 58.191 37.500 3.32 6.34 0.00 2.32
420 421 6.946340 TGAGATTTAGCCAGACTGACAAATA 58.054 36.000 3.32 0.00 0.00 1.40
421 422 7.394016 TGAGATTTAGCCAGACTGACAAATAA 58.606 34.615 3.32 0.00 0.00 1.40
422 423 8.049117 TGAGATTTAGCCAGACTGACAAATAAT 58.951 33.333 3.32 0.00 0.00 1.28
423 424 9.547753 GAGATTTAGCCAGACTGACAAATAATA 57.452 33.333 3.32 0.00 0.00 0.98
426 427 9.851686 ATTTAGCCAGACTGACAAATAATATCA 57.148 29.630 3.32 0.00 0.00 2.15
427 428 9.851686 TTTAGCCAGACTGACAAATAATATCAT 57.148 29.630 3.32 0.00 0.00 2.45
428 429 9.851686 TTAGCCAGACTGACAAATAATATCATT 57.148 29.630 3.32 0.00 0.00 2.57
530 531 4.157840 GGAAAATCAAACGCTCCCTACATT 59.842 41.667 0.00 0.00 0.00 2.71
531 532 5.336451 GGAAAATCAAACGCTCCCTACATTT 60.336 40.000 0.00 0.00 0.00 2.32
532 533 5.722021 AAATCAAACGCTCCCTACATTTT 57.278 34.783 0.00 0.00 0.00 1.82
533 534 4.701956 ATCAAACGCTCCCTACATTTTG 57.298 40.909 0.00 0.00 0.00 2.44
534 535 2.817258 TCAAACGCTCCCTACATTTTGG 59.183 45.455 0.00 0.00 0.00 3.28
584 612 5.789643 TTTAATGATGATTTAGGCTGGGC 57.210 39.130 0.00 0.00 0.00 5.36
597 625 0.250424 GCTGGGCCAATTGCAGTTTT 60.250 50.000 8.04 0.00 43.89 2.43
609 637 1.683917 TGCAGTTTTATTTGTGGCCGT 59.316 42.857 0.00 0.00 0.00 5.68
698 726 4.070552 GAGGACAAGACGCGGGCT 62.071 66.667 12.47 4.12 0.00 5.19
730 758 2.874709 GAGCGCCTAAAGTAGCTCG 58.125 57.895 2.29 0.00 45.08 5.03
842 876 1.971167 CCCACGGTCAACACCCATG 60.971 63.158 0.00 0.00 40.01 3.66
882 916 3.899052 TTAAACCCATCCGTACTCCTG 57.101 47.619 0.00 0.00 0.00 3.86
912 946 1.260544 AATCCCACAAGAGCAAAGCC 58.739 50.000 0.00 0.00 0.00 4.35
915 949 0.316204 CCCACAAGAGCAAAGCCAAG 59.684 55.000 0.00 0.00 0.00 3.61
916 950 0.319297 CCACAAGAGCAAAGCCAAGC 60.319 55.000 0.00 0.00 0.00 4.01
917 951 0.386476 CACAAGAGCAAAGCCAAGCA 59.614 50.000 0.00 0.00 0.00 3.91
918 952 1.113788 ACAAGAGCAAAGCCAAGCAA 58.886 45.000 0.00 0.00 0.00 3.91
919 953 1.481772 ACAAGAGCAAAGCCAAGCAAA 59.518 42.857 0.00 0.00 0.00 3.68
920 954 2.132762 CAAGAGCAAAGCCAAGCAAAG 58.867 47.619 0.00 0.00 0.00 2.77
921 955 0.033090 AGAGCAAAGCCAAGCAAAGC 59.967 50.000 0.00 0.00 0.00 3.51
922 956 0.249573 GAGCAAAGCCAAGCAAAGCA 60.250 50.000 0.00 0.00 0.00 3.91
923 957 0.178533 AGCAAAGCCAAGCAAAGCAA 59.821 45.000 0.00 0.00 0.00 3.91
924 958 1.015868 GCAAAGCCAAGCAAAGCAAA 58.984 45.000 0.00 0.00 0.00 3.68
925 959 1.268184 GCAAAGCCAAGCAAAGCAAAC 60.268 47.619 0.00 0.00 0.00 2.93
926 960 2.282407 CAAAGCCAAGCAAAGCAAACT 58.718 42.857 0.00 0.00 0.00 2.66
973 1007 1.476488 TCTCCGATCGATCAACAGCAA 59.524 47.619 24.40 0.97 0.00 3.91
1179 1243 3.546020 CGTATATGCTTCCTTGTTTGGCG 60.546 47.826 0.00 0.00 0.00 5.69
1256 1320 6.689554 CATATATGGCCATGTATGCAACAAA 58.310 36.000 35.46 13.11 42.70 2.83
1273 1337 5.861787 GCAACAAATTAATTAGCCTTGTCGT 59.138 36.000 0.01 0.00 30.16 4.34
1332 1397 4.504858 GGCCAGTAGAAGAATCTTCGAAA 58.495 43.478 16.35 4.76 37.10 3.46
1775 2367 4.489771 CCCGCCTCCGCCTTCAAT 62.490 66.667 0.00 0.00 0.00 2.57
1908 2500 4.950475 AGAACAACTAGATGTGGAGATCGA 59.050 41.667 6.39 0.00 32.81 3.59
1937 2529 3.785486 GCAAAGTTTGTTGGCTTTCTCT 58.215 40.909 16.70 0.00 33.19 3.10
1981 2575 4.970662 TGTAACAGTATCAGTACGGACC 57.029 45.455 0.00 0.00 35.92 4.46
2024 2636 5.793457 GTGCAAACTGTACGGATAAATGTTC 59.207 40.000 9.17 0.00 0.00 3.18
2053 2665 2.733956 ACCTCCTTTTTGTTGTGAGCA 58.266 42.857 0.00 0.00 0.00 4.26
2102 2714 8.683550 TTTGATTTCAGACAGTAGTACATACG 57.316 34.615 2.52 0.00 39.55 3.06
2103 2715 6.263344 TGATTTCAGACAGTAGTACATACGC 58.737 40.000 2.52 0.00 39.55 4.42
2104 2716 5.632244 TTTCAGACAGTAGTACATACGCA 57.368 39.130 2.52 0.00 39.55 5.24
2105 2717 5.632244 TTCAGACAGTAGTACATACGCAA 57.368 39.130 2.52 0.00 39.55 4.85
2106 2718 5.632244 TCAGACAGTAGTACATACGCAAA 57.368 39.130 2.52 0.00 39.55 3.68
2107 2719 5.637809 TCAGACAGTAGTACATACGCAAAG 58.362 41.667 2.52 0.00 39.55 2.77
2108 2720 5.182570 TCAGACAGTAGTACATACGCAAAGT 59.817 40.000 2.52 0.00 39.55 2.66
2109 2721 6.372381 TCAGACAGTAGTACATACGCAAAGTA 59.628 38.462 2.52 0.00 39.55 2.24
2110 2722 7.066645 TCAGACAGTAGTACATACGCAAAGTAT 59.933 37.037 2.52 0.00 46.37 2.12
2111 2723 7.701078 CAGACAGTAGTACATACGCAAAGTATT 59.299 37.037 2.52 0.00 43.12 1.89
2112 2724 7.914346 AGACAGTAGTACATACGCAAAGTATTC 59.086 37.037 2.52 0.00 43.12 1.75
2113 2725 7.769220 ACAGTAGTACATACGCAAAGTATTCT 58.231 34.615 2.52 0.00 43.12 2.40
2114 2726 8.896744 ACAGTAGTACATACGCAAAGTATTCTA 58.103 33.333 2.52 0.00 43.12 2.10
2115 2727 9.894783 CAGTAGTACATACGCAAAGTATTCTAT 57.105 33.333 2.52 0.00 43.12 1.98
2118 2730 8.813643 AGTACATACGCAAAGTATTCTATTCC 57.186 34.615 0.00 0.00 43.12 3.01
2119 2731 8.639761 AGTACATACGCAAAGTATTCTATTCCT 58.360 33.333 0.00 0.00 43.12 3.36
2120 2732 9.903682 GTACATACGCAAAGTATTCTATTCCTA 57.096 33.333 0.00 0.00 43.12 2.94
2180 2792 2.877097 TGCATTGGTGGTCACTACAT 57.123 45.000 0.00 0.00 0.00 2.29
2298 2910 7.148474 ACACCGTATAGCTCTGTATTTTGTTTG 60.148 37.037 0.00 0.00 0.00 2.93
2349 2963 3.006752 CCTTGTCAGCTCACTTTCTCTCT 59.993 47.826 0.00 0.00 0.00 3.10
2355 2969 3.761218 CAGCTCACTTTCTCTCTCTACCA 59.239 47.826 0.00 0.00 0.00 3.25
2383 2997 3.569873 CCACCTGTCAATGGGGTAC 57.430 57.895 0.00 0.00 31.83 3.34
2384 2998 0.392461 CCACCTGTCAATGGGGTACG 60.392 60.000 0.00 0.00 31.83 3.67
2385 2999 0.323629 CACCTGTCAATGGGGTACGT 59.676 55.000 0.00 0.00 0.00 3.57
2386 3000 0.323629 ACCTGTCAATGGGGTACGTG 59.676 55.000 0.00 0.00 0.00 4.49
2387 3001 1.024579 CCTGTCAATGGGGTACGTGC 61.025 60.000 0.00 0.00 0.00 5.34
2389 3003 0.326595 TGTCAATGGGGTACGTGCAT 59.673 50.000 5.86 0.00 0.00 3.96
2524 3337 8.526147 GGAGTAATATAATGCAGCATCCATTTT 58.474 33.333 8.77 9.09 34.87 1.82
2617 3431 9.399797 TGTGCATCTAATCATCTGTATTTTTCT 57.600 29.630 0.00 0.00 0.00 2.52
2669 3498 7.804129 TCGGTATTTTTAGTTGTTCAAATTCCG 59.196 33.333 12.62 12.62 44.49 4.30
2694 3523 1.005097 TGGACTCTAGACCGGCTGTTA 59.995 52.381 0.00 0.00 32.50 2.41
2740 3569 7.660030 ATTAGTGCTAACAATTAATGGGCTT 57.340 32.000 0.00 0.00 0.00 4.35
2758 3587 0.327924 TTCAGACCGGCCATGTGAAT 59.672 50.000 11.41 0.00 0.00 2.57
2844 3804 2.483745 CAGGCTTCGTGCATGCAG 59.516 61.111 23.41 15.31 46.51 4.41
2845 3805 2.749044 AGGCTTCGTGCATGCAGG 60.749 61.111 29.80 29.80 45.15 4.85
2869 3829 4.803426 CCAGGAGCGACGCTGGAC 62.803 72.222 29.85 16.86 39.88 4.02
2870 3830 4.056125 CAGGAGCGACGCTGGACA 62.056 66.667 29.85 0.00 39.88 4.02
2871 3831 3.753434 AGGAGCGACGCTGGACAG 61.753 66.667 29.85 0.00 39.88 3.51
2872 3832 3.749064 GGAGCGACGCTGGACAGA 61.749 66.667 29.85 0.00 39.88 3.41
2873 3833 2.258591 GAGCGACGCTGGACAGAA 59.741 61.111 29.85 0.00 39.88 3.02
2874 3834 1.153745 GAGCGACGCTGGACAGAAT 60.154 57.895 29.85 0.00 39.88 2.40
2875 3835 1.416813 GAGCGACGCTGGACAGAATG 61.417 60.000 29.85 0.00 39.88 2.67
2876 3836 3.084579 CGACGCTGGACAGAATGC 58.915 61.111 3.00 0.00 42.53 3.56
2879 3839 3.197790 CGCTGGACAGAATGCGGG 61.198 66.667 3.00 0.00 42.53 6.13
2880 3840 2.825836 GCTGGACAGAATGCGGGG 60.826 66.667 3.00 0.00 42.53 5.73
2881 3841 2.825836 CTGGACAGAATGCGGGGC 60.826 66.667 0.00 0.00 42.53 5.80
2882 3842 4.776322 TGGACAGAATGCGGGGCG 62.776 66.667 0.00 0.00 42.53 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.188817 ACCACTGTCCTCCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
1 2 2.344093 ACCACTGTCCTCCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
2 3 2.532843 GTACCACTGTCCTCCTAACCA 58.467 52.381 0.00 0.00 0.00 3.67
3 4 1.829849 GGTACCACTGTCCTCCTAACC 59.170 57.143 7.15 0.00 0.00 2.85
30 31 3.089284 GTTAGGATTTGAACCCTGGTGG 58.911 50.000 0.00 0.00 41.37 4.61
31 32 3.089284 GGTTAGGATTTGAACCCTGGTG 58.911 50.000 0.00 0.00 39.43 4.17
32 33 2.993863 AGGTTAGGATTTGAACCCTGGT 59.006 45.455 0.22 0.00 45.33 4.00
33 34 3.739401 AGGTTAGGATTTGAACCCTGG 57.261 47.619 0.22 0.00 45.33 4.45
34 35 4.459337 GTCAAGGTTAGGATTTGAACCCTG 59.541 45.833 0.22 0.00 45.33 4.45
35 36 4.105697 TGTCAAGGTTAGGATTTGAACCCT 59.894 41.667 0.22 0.00 45.33 4.34
36 37 4.403734 TGTCAAGGTTAGGATTTGAACCC 58.596 43.478 0.22 0.00 45.33 4.11
37 38 6.208599 TCAATGTCAAGGTTAGGATTTGAACC 59.791 38.462 0.00 0.00 44.68 3.62
38 39 7.214467 TCAATGTCAAGGTTAGGATTTGAAC 57.786 36.000 0.00 0.00 33.10 3.18
39 40 7.577426 GCATCAATGTCAAGGTTAGGATTTGAA 60.577 37.037 0.00 0.00 33.10 2.69
40 41 6.127647 GCATCAATGTCAAGGTTAGGATTTGA 60.128 38.462 0.00 0.00 0.00 2.69
41 42 6.038356 GCATCAATGTCAAGGTTAGGATTTG 58.962 40.000 0.00 0.00 0.00 2.32
42 43 5.954150 AGCATCAATGTCAAGGTTAGGATTT 59.046 36.000 0.00 0.00 0.00 2.17
43 44 5.513233 AGCATCAATGTCAAGGTTAGGATT 58.487 37.500 0.00 0.00 0.00 3.01
44 45 5.121380 AGCATCAATGTCAAGGTTAGGAT 57.879 39.130 0.00 0.00 0.00 3.24
45 46 4.019411 TGAGCATCAATGTCAAGGTTAGGA 60.019 41.667 0.00 0.00 45.97 2.94
46 47 4.264253 TGAGCATCAATGTCAAGGTTAGG 58.736 43.478 0.00 0.00 45.97 2.69
61 62 6.645790 AAATCCAGGAATAATGTGAGCATC 57.354 37.500 0.00 0.00 33.50 3.91
62 63 8.716674 AATAAATCCAGGAATAATGTGAGCAT 57.283 30.769 0.00 0.00 36.80 3.79
63 64 8.169977 GAATAAATCCAGGAATAATGTGAGCA 57.830 34.615 0.00 0.00 0.00 4.26
80 81 2.544267 CGTCGGAAGCCTGGAATAAATC 59.456 50.000 0.00 0.00 0.00 2.17
81 82 2.169769 TCGTCGGAAGCCTGGAATAAAT 59.830 45.455 0.00 0.00 0.00 1.40
82 83 1.551430 TCGTCGGAAGCCTGGAATAAA 59.449 47.619 0.00 0.00 0.00 1.40
83 84 1.187974 TCGTCGGAAGCCTGGAATAA 58.812 50.000 0.00 0.00 0.00 1.40
84 85 1.068588 CATCGTCGGAAGCCTGGAATA 59.931 52.381 0.00 0.00 0.00 1.75
85 86 0.179073 CATCGTCGGAAGCCTGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
86 87 1.218047 CATCGTCGGAAGCCTGGAA 59.782 57.895 0.00 0.00 0.00 3.53
87 88 1.541310 AACATCGTCGGAAGCCTGGA 61.541 55.000 0.00 0.00 0.00 3.86
88 89 1.079127 AACATCGTCGGAAGCCTGG 60.079 57.895 0.00 0.00 0.00 4.45
89 90 1.413767 CGAACATCGTCGGAAGCCTG 61.414 60.000 0.00 0.00 37.37 4.85
90 91 1.153823 CGAACATCGTCGGAAGCCT 60.154 57.895 0.00 0.00 37.37 4.58
91 92 3.384927 CGAACATCGTCGGAAGCC 58.615 61.111 0.00 0.00 37.37 4.35
100 101 2.284684 CGCTCTCATTGAACGAACATCG 60.285 50.000 0.00 0.00 46.93 3.84
101 102 2.029728 CCGCTCTCATTGAACGAACATC 59.970 50.000 0.00 0.00 36.47 3.06
102 103 2.002586 CCGCTCTCATTGAACGAACAT 58.997 47.619 0.00 0.00 36.47 2.71
103 104 1.000394 TCCGCTCTCATTGAACGAACA 60.000 47.619 0.00 0.00 36.47 3.18
104 105 1.710013 TCCGCTCTCATTGAACGAAC 58.290 50.000 0.00 0.00 36.47 3.95
105 106 2.270923 CATCCGCTCTCATTGAACGAA 58.729 47.619 0.00 0.00 36.47 3.85
106 107 1.204704 ACATCCGCTCTCATTGAACGA 59.795 47.619 0.00 0.00 36.47 3.85
107 108 1.645034 ACATCCGCTCTCATTGAACG 58.355 50.000 0.00 0.00 34.38 3.95
108 109 4.425577 AAAACATCCGCTCTCATTGAAC 57.574 40.909 0.00 0.00 0.00 3.18
109 110 4.278170 ACAAAAACATCCGCTCTCATTGAA 59.722 37.500 0.00 0.00 0.00 2.69
110 111 3.820467 ACAAAAACATCCGCTCTCATTGA 59.180 39.130 0.00 0.00 0.00 2.57
111 112 4.161333 GACAAAAACATCCGCTCTCATTG 58.839 43.478 0.00 0.00 0.00 2.82
112 113 3.120199 CGACAAAAACATCCGCTCTCATT 60.120 43.478 0.00 0.00 0.00 2.57
113 114 2.416547 CGACAAAAACATCCGCTCTCAT 59.583 45.455 0.00 0.00 0.00 2.90
114 115 1.798223 CGACAAAAACATCCGCTCTCA 59.202 47.619 0.00 0.00 0.00 3.27
115 116 2.066262 TCGACAAAAACATCCGCTCTC 58.934 47.619 0.00 0.00 0.00 3.20
116 117 1.798813 GTCGACAAAAACATCCGCTCT 59.201 47.619 11.55 0.00 0.00 4.09
117 118 1.529438 TGTCGACAAAAACATCCGCTC 59.471 47.619 17.62 0.00 0.00 5.03
118 119 1.588674 TGTCGACAAAAACATCCGCT 58.411 45.000 17.62 0.00 0.00 5.52
119 120 2.041244 GTTGTCGACAAAAACATCCGC 58.959 47.619 31.20 12.70 37.63 5.54
120 121 2.285950 ACGTTGTCGACAAAAACATCCG 60.286 45.455 31.20 27.31 37.63 4.18
121 122 3.033185 CACGTTGTCGACAAAAACATCC 58.967 45.455 31.20 16.29 37.63 3.51
122 123 3.033185 CCACGTTGTCGACAAAAACATC 58.967 45.455 31.20 16.98 37.63 3.06
123 124 2.420722 ACCACGTTGTCGACAAAAACAT 59.579 40.909 31.20 15.00 37.63 2.71
124 125 1.805345 ACCACGTTGTCGACAAAAACA 59.195 42.857 31.20 7.75 37.63 2.83
125 126 2.170770 CACCACGTTGTCGACAAAAAC 58.829 47.619 31.20 19.35 37.63 2.43
126 127 1.466024 GCACCACGTTGTCGACAAAAA 60.466 47.619 31.20 8.59 37.63 1.94
127 128 0.097325 GCACCACGTTGTCGACAAAA 59.903 50.000 31.20 9.41 37.63 2.44
128 129 0.741574 AGCACCACGTTGTCGACAAA 60.742 50.000 31.20 13.79 37.63 2.83
129 130 0.741574 AAGCACCACGTTGTCGACAA 60.742 50.000 26.53 26.53 40.62 3.18
130 131 1.153529 AAGCACCACGTTGTCGACA 60.154 52.632 15.76 15.76 40.62 4.35
131 132 1.275657 CAAGCACCACGTTGTCGAC 59.724 57.895 9.11 9.11 40.62 4.20
132 133 1.153529 ACAAGCACCACGTTGTCGA 60.154 52.632 0.00 0.00 40.62 4.20
133 134 1.011242 CACAAGCACCACGTTGTCG 60.011 57.895 0.00 0.00 43.34 4.35
134 135 1.355210 CCACAAGCACCACGTTGTC 59.645 57.895 0.00 0.00 34.62 3.18
135 136 1.377987 ACCACAAGCACCACGTTGT 60.378 52.632 0.00 0.00 37.37 3.32
136 137 1.063972 CACCACAAGCACCACGTTG 59.936 57.895 0.00 0.00 0.00 4.10
137 138 0.465460 ATCACCACAAGCACCACGTT 60.465 50.000 0.00 0.00 0.00 3.99
138 139 0.465460 AATCACCACAAGCACCACGT 60.465 50.000 0.00 0.00 0.00 4.49
139 140 0.667993 AAATCACCACAAGCACCACG 59.332 50.000 0.00 0.00 0.00 4.94
140 141 1.334960 CGAAATCACCACAAGCACCAC 60.335 52.381 0.00 0.00 0.00 4.16
141 142 0.950836 CGAAATCACCACAAGCACCA 59.049 50.000 0.00 0.00 0.00 4.17
142 143 0.951558 ACGAAATCACCACAAGCACC 59.048 50.000 0.00 0.00 0.00 5.01
143 144 3.889196 TTACGAAATCACCACAAGCAC 57.111 42.857 0.00 0.00 0.00 4.40
144 145 5.009110 TGAATTTACGAAATCACCACAAGCA 59.991 36.000 0.00 0.00 0.00 3.91
145 146 5.457140 TGAATTTACGAAATCACCACAAGC 58.543 37.500 0.00 0.00 0.00 4.01
146 147 7.359595 TCTTGAATTTACGAAATCACCACAAG 58.640 34.615 0.00 0.00 33.60 3.16
147 148 7.265647 TCTTGAATTTACGAAATCACCACAA 57.734 32.000 0.00 0.00 0.00 3.33
148 149 6.869315 TCTTGAATTTACGAAATCACCACA 57.131 33.333 0.00 0.00 0.00 4.17
149 150 7.526608 TGATCTTGAATTTACGAAATCACCAC 58.473 34.615 0.00 0.00 0.00 4.16
150 151 7.680442 TGATCTTGAATTTACGAAATCACCA 57.320 32.000 0.00 0.00 0.00 4.17
157 158 8.869897 GCCGATATATGATCTTGAATTTACGAA 58.130 33.333 0.00 0.00 0.00 3.85
158 159 8.251026 AGCCGATATATGATCTTGAATTTACGA 58.749 33.333 0.00 0.00 0.00 3.43
159 160 8.412608 AGCCGATATATGATCTTGAATTTACG 57.587 34.615 0.00 0.00 0.00 3.18
160 161 9.371136 TGAGCCGATATATGATCTTGAATTTAC 57.629 33.333 0.00 0.00 0.00 2.01
161 162 9.591792 CTGAGCCGATATATGATCTTGAATTTA 57.408 33.333 0.00 0.00 0.00 1.40
162 163 8.099537 ACTGAGCCGATATATGATCTTGAATTT 58.900 33.333 0.00 0.00 0.00 1.82
163 164 7.619050 ACTGAGCCGATATATGATCTTGAATT 58.381 34.615 0.00 0.00 0.00 2.17
164 165 7.123997 AGACTGAGCCGATATATGATCTTGAAT 59.876 37.037 0.00 0.00 0.00 2.57
165 166 6.435591 AGACTGAGCCGATATATGATCTTGAA 59.564 38.462 0.00 0.00 0.00 2.69
166 167 5.948758 AGACTGAGCCGATATATGATCTTGA 59.051 40.000 0.00 0.00 0.00 3.02
167 168 6.095300 AGAGACTGAGCCGATATATGATCTTG 59.905 42.308 0.00 0.00 0.00 3.02
168 169 6.186957 AGAGACTGAGCCGATATATGATCTT 58.813 40.000 0.00 0.00 0.00 2.40
169 170 5.754782 AGAGACTGAGCCGATATATGATCT 58.245 41.667 0.00 0.00 0.00 2.75
170 171 6.204688 CCTAGAGACTGAGCCGATATATGATC 59.795 46.154 0.00 0.00 0.00 2.92
171 172 6.061441 CCTAGAGACTGAGCCGATATATGAT 58.939 44.000 0.00 0.00 0.00 2.45
172 173 5.189934 TCCTAGAGACTGAGCCGATATATGA 59.810 44.000 0.00 0.00 0.00 2.15
173 174 5.432645 TCCTAGAGACTGAGCCGATATATG 58.567 45.833 0.00 0.00 0.00 1.78
174 175 5.397447 CCTCCTAGAGACTGAGCCGATATAT 60.397 48.000 0.00 0.00 0.00 0.86
175 176 4.080807 CCTCCTAGAGACTGAGCCGATATA 60.081 50.000 0.00 0.00 0.00 0.86
176 177 3.308117 CCTCCTAGAGACTGAGCCGATAT 60.308 52.174 0.00 0.00 0.00 1.63
177 178 2.039216 CCTCCTAGAGACTGAGCCGATA 59.961 54.545 0.00 0.00 0.00 2.92
178 179 1.202879 CCTCCTAGAGACTGAGCCGAT 60.203 57.143 0.00 0.00 0.00 4.18
179 180 0.181587 CCTCCTAGAGACTGAGCCGA 59.818 60.000 0.00 0.00 0.00 5.54
180 181 0.106918 ACCTCCTAGAGACTGAGCCG 60.107 60.000 0.00 0.00 0.00 5.52
181 182 1.398692 CACCTCCTAGAGACTGAGCC 58.601 60.000 0.00 0.00 0.00 4.70
182 183 0.744281 GCACCTCCTAGAGACTGAGC 59.256 60.000 0.00 0.00 0.00 4.26
183 184 2.297701 GAGCACCTCCTAGAGACTGAG 58.702 57.143 0.00 0.00 0.00 3.35
184 185 1.636003 TGAGCACCTCCTAGAGACTGA 59.364 52.381 0.00 0.00 0.00 3.41
185 186 2.136298 TGAGCACCTCCTAGAGACTG 57.864 55.000 0.00 0.00 0.00 3.51
186 187 4.469657 CTTATGAGCACCTCCTAGAGACT 58.530 47.826 0.00 0.00 0.00 3.24
187 188 4.846779 CTTATGAGCACCTCCTAGAGAC 57.153 50.000 0.00 0.00 0.00 3.36
200 201 1.571919 CACACCCTACGCTTATGAGC 58.428 55.000 0.00 0.00 45.65 4.26
201 202 1.571919 GCACACCCTACGCTTATGAG 58.428 55.000 0.00 0.00 0.00 2.90
202 203 0.179121 CGCACACCCTACGCTTATGA 60.179 55.000 0.00 0.00 0.00 2.15
203 204 0.459585 ACGCACACCCTACGCTTATG 60.460 55.000 0.00 0.00 0.00 1.90
204 205 0.459585 CACGCACACCCTACGCTTAT 60.460 55.000 0.00 0.00 0.00 1.73
205 206 1.080366 CACGCACACCCTACGCTTA 60.080 57.895 0.00 0.00 0.00 3.09
206 207 2.357034 CACGCACACCCTACGCTT 60.357 61.111 0.00 0.00 0.00 4.68
207 208 3.612681 ACACGCACACCCTACGCT 61.613 61.111 0.00 0.00 0.00 5.07
208 209 3.411351 CACACGCACACCCTACGC 61.411 66.667 0.00 0.00 0.00 4.42
209 210 2.028484 ACACACGCACACCCTACG 59.972 61.111 0.00 0.00 0.00 3.51
210 211 1.227438 ACACACACGCACACCCTAC 60.227 57.895 0.00 0.00 0.00 3.18
211 212 1.227409 CACACACACGCACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
212 213 2.513666 CACACACACGCACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
213 214 2.317685 GAACACACACACGCACACCC 62.318 60.000 0.00 0.00 0.00 4.61
214 215 1.061887 GAACACACACACGCACACC 59.938 57.895 0.00 0.00 0.00 4.16
215 216 0.376852 ATGAACACACACACGCACAC 59.623 50.000 0.00 0.00 0.00 3.82
216 217 1.864082 CTATGAACACACACACGCACA 59.136 47.619 0.00 0.00 0.00 4.57
217 218 1.194547 CCTATGAACACACACACGCAC 59.805 52.381 0.00 0.00 0.00 5.34
218 219 1.507562 CCTATGAACACACACACGCA 58.492 50.000 0.00 0.00 0.00 5.24
219 220 0.796312 CCCTATGAACACACACACGC 59.204 55.000 0.00 0.00 0.00 5.34
220 221 1.270625 ACCCCTATGAACACACACACG 60.271 52.381 0.00 0.00 0.00 4.49
221 222 2.151202 CACCCCTATGAACACACACAC 58.849 52.381 0.00 0.00 0.00 3.82
222 223 2.050918 TCACCCCTATGAACACACACA 58.949 47.619 0.00 0.00 0.00 3.72
223 224 2.851263 TCACCCCTATGAACACACAC 57.149 50.000 0.00 0.00 0.00 3.82
224 225 3.073798 ACATTCACCCCTATGAACACACA 59.926 43.478 0.00 0.00 41.29 3.72
225 226 3.686016 ACATTCACCCCTATGAACACAC 58.314 45.455 0.00 0.00 41.29 3.82
226 227 5.436175 CATACATTCACCCCTATGAACACA 58.564 41.667 0.00 0.00 41.29 3.72
227 228 4.275936 GCATACATTCACCCCTATGAACAC 59.724 45.833 0.00 0.00 41.29 3.32
228 229 4.165950 AGCATACATTCACCCCTATGAACA 59.834 41.667 0.00 0.00 41.29 3.18
229 230 4.718961 AGCATACATTCACCCCTATGAAC 58.281 43.478 0.00 0.00 41.29 3.18
230 231 4.503123 CGAGCATACATTCACCCCTATGAA 60.503 45.833 0.00 0.00 42.62 2.57
231 232 3.006859 CGAGCATACATTCACCCCTATGA 59.993 47.826 0.00 0.00 0.00 2.15
232 233 3.244215 ACGAGCATACATTCACCCCTATG 60.244 47.826 0.00 0.00 0.00 2.23
233 234 2.972713 ACGAGCATACATTCACCCCTAT 59.027 45.455 0.00 0.00 0.00 2.57
234 235 2.102420 CACGAGCATACATTCACCCCTA 59.898 50.000 0.00 0.00 0.00 3.53
235 236 1.134401 CACGAGCATACATTCACCCCT 60.134 52.381 0.00 0.00 0.00 4.79
236 237 1.299541 CACGAGCATACATTCACCCC 58.700 55.000 0.00 0.00 0.00 4.95
237 238 2.024176 ACACGAGCATACATTCACCC 57.976 50.000 0.00 0.00 0.00 4.61
238 239 4.025730 CACATACACGAGCATACATTCACC 60.026 45.833 0.00 0.00 0.00 4.02
239 240 4.803613 TCACATACACGAGCATACATTCAC 59.196 41.667 0.00 0.00 0.00 3.18
240 241 5.004922 TCACATACACGAGCATACATTCA 57.995 39.130 0.00 0.00 0.00 2.57
241 242 5.043903 ACTCACATACACGAGCATACATTC 58.956 41.667 0.00 0.00 32.21 2.67
242 243 4.805719 CACTCACATACACGAGCATACATT 59.194 41.667 0.00 0.00 32.21 2.71
243 244 4.097892 TCACTCACATACACGAGCATACAT 59.902 41.667 0.00 0.00 32.21 2.29
244 245 3.442273 TCACTCACATACACGAGCATACA 59.558 43.478 0.00 0.00 32.21 2.29
245 246 3.791887 GTCACTCACATACACGAGCATAC 59.208 47.826 0.00 0.00 32.21 2.39
246 247 3.694566 AGTCACTCACATACACGAGCATA 59.305 43.478 0.00 0.00 32.21 3.14
247 248 2.493675 AGTCACTCACATACACGAGCAT 59.506 45.455 0.00 0.00 32.21 3.79
248 249 1.886542 AGTCACTCACATACACGAGCA 59.113 47.619 0.00 0.00 32.21 4.26
249 250 2.638556 AGTCACTCACATACACGAGC 57.361 50.000 0.00 0.00 32.21 5.03
250 251 3.120304 TCGAAGTCACTCACATACACGAG 60.120 47.826 0.00 0.00 35.30 4.18
251 252 2.809696 TCGAAGTCACTCACATACACGA 59.190 45.455 0.00 0.00 0.00 4.35
252 253 3.197434 TCGAAGTCACTCACATACACG 57.803 47.619 0.00 0.00 0.00 4.49
253 254 4.923871 ACAATCGAAGTCACTCACATACAC 59.076 41.667 0.00 0.00 0.00 2.90
254 255 5.134202 ACAATCGAAGTCACTCACATACA 57.866 39.130 0.00 0.00 0.00 2.29
255 256 7.757097 AATACAATCGAAGTCACTCACATAC 57.243 36.000 0.00 0.00 0.00 2.39
256 257 9.463443 CATAATACAATCGAAGTCACTCACATA 57.537 33.333 0.00 0.00 0.00 2.29
257 258 7.981789 ACATAATACAATCGAAGTCACTCACAT 59.018 33.333 0.00 0.00 0.00 3.21
258 259 7.320399 ACATAATACAATCGAAGTCACTCACA 58.680 34.615 0.00 0.00 0.00 3.58
259 260 7.757097 ACATAATACAATCGAAGTCACTCAC 57.243 36.000 0.00 0.00 0.00 3.51
260 261 8.032451 TGAACATAATACAATCGAAGTCACTCA 58.968 33.333 0.00 0.00 0.00 3.41
261 262 8.321716 GTGAACATAATACAATCGAAGTCACTC 58.678 37.037 0.00 0.00 0.00 3.51
262 263 7.817478 TGTGAACATAATACAATCGAAGTCACT 59.183 33.333 0.00 0.00 0.00 3.41
263 264 7.959733 TGTGAACATAATACAATCGAAGTCAC 58.040 34.615 0.00 0.00 0.00 3.67
264 265 8.541133 TTGTGAACATAATACAATCGAAGTCA 57.459 30.769 0.00 0.00 30.06 3.41
265 266 9.820229 TTTTGTGAACATAATACAATCGAAGTC 57.180 29.630 0.00 0.00 34.63 3.01
281 282 9.304731 CAAATTCTTCTCAGATTTTTGTGAACA 57.695 29.630 0.00 0.00 32.58 3.18
282 283 8.271487 GCAAATTCTTCTCAGATTTTTGTGAAC 58.729 33.333 0.00 0.00 36.15 3.18
283 284 7.980662 TGCAAATTCTTCTCAGATTTTTGTGAA 59.019 29.630 0.00 0.00 36.15 3.18
284 285 7.436080 GTGCAAATTCTTCTCAGATTTTTGTGA 59.564 33.333 0.00 0.00 36.15 3.58
285 286 7.223193 TGTGCAAATTCTTCTCAGATTTTTGTG 59.777 33.333 0.00 0.00 36.15 3.33
286 287 7.267128 TGTGCAAATTCTTCTCAGATTTTTGT 58.733 30.769 0.00 0.00 36.15 2.83
287 288 7.650504 TCTGTGCAAATTCTTCTCAGATTTTTG 59.349 33.333 0.00 0.00 36.49 2.44
288 289 7.719483 TCTGTGCAAATTCTTCTCAGATTTTT 58.281 30.769 0.00 0.00 32.58 1.94
289 290 7.281040 TCTGTGCAAATTCTTCTCAGATTTT 57.719 32.000 0.00 0.00 34.36 1.82
290 291 6.889301 TCTGTGCAAATTCTTCTCAGATTT 57.111 33.333 0.00 0.00 0.00 2.17
291 292 6.885376 AGATCTGTGCAAATTCTTCTCAGATT 59.115 34.615 10.79 1.69 39.96 2.40
292 293 6.416415 AGATCTGTGCAAATTCTTCTCAGAT 58.584 36.000 9.62 9.62 41.69 2.90
293 294 5.802465 AGATCTGTGCAAATTCTTCTCAGA 58.198 37.500 0.00 0.00 35.47 3.27
294 295 5.642491 TGAGATCTGTGCAAATTCTTCTCAG 59.358 40.000 0.00 1.25 34.89 3.35
295 296 5.554070 TGAGATCTGTGCAAATTCTTCTCA 58.446 37.500 0.00 9.82 36.83 3.27
296 297 6.492007 TTGAGATCTGTGCAAATTCTTCTC 57.508 37.500 0.00 0.00 0.00 2.87
297 298 6.889301 TTTGAGATCTGTGCAAATTCTTCT 57.111 33.333 0.00 0.00 0.00 2.85
298 299 9.630098 TTAATTTGAGATCTGTGCAAATTCTTC 57.370 29.630 25.31 1.11 44.41 2.87
299 300 9.635520 CTTAATTTGAGATCTGTGCAAATTCTT 57.364 29.630 25.31 13.45 44.41 2.52
300 301 9.017509 TCTTAATTTGAGATCTGTGCAAATTCT 57.982 29.630 25.31 13.45 44.41 2.40
301 302 9.798994 ATCTTAATTTGAGATCTGTGCAAATTC 57.201 29.630 25.31 2.33 44.41 2.17
322 323 9.892130 TCTCGATGCTATATTAGTGAGATCTTA 57.108 33.333 0.00 0.00 0.00 2.10
323 324 8.673711 GTCTCGATGCTATATTAGTGAGATCTT 58.326 37.037 0.00 0.00 34.18 2.40
324 325 7.826744 TGTCTCGATGCTATATTAGTGAGATCT 59.173 37.037 0.00 0.00 34.18 2.75
325 326 7.980062 TGTCTCGATGCTATATTAGTGAGATC 58.020 38.462 0.00 0.00 34.18 2.75
326 327 7.929941 TGTCTCGATGCTATATTAGTGAGAT 57.070 36.000 0.00 0.00 34.18 2.75
327 328 7.929941 ATGTCTCGATGCTATATTAGTGAGA 57.070 36.000 0.00 0.00 0.00 3.27
328 329 9.497030 GTTATGTCTCGATGCTATATTAGTGAG 57.503 37.037 0.00 0.00 0.00 3.51
329 330 9.232473 AGTTATGTCTCGATGCTATATTAGTGA 57.768 33.333 0.00 0.00 0.00 3.41
339 340 8.634444 ACTAAGATTTAGTTATGTCTCGATGCT 58.366 33.333 0.00 0.00 0.00 3.79
340 341 8.804688 ACTAAGATTTAGTTATGTCTCGATGC 57.195 34.615 0.00 0.00 0.00 3.91
341 342 9.108449 CGACTAAGATTTAGTTATGTCTCGATG 57.892 37.037 3.26 0.00 0.00 3.84
342 343 9.053840 TCGACTAAGATTTAGTTATGTCTCGAT 57.946 33.333 3.26 0.00 0.00 3.59
343 344 8.429493 TCGACTAAGATTTAGTTATGTCTCGA 57.571 34.615 3.26 3.64 0.00 4.04
344 345 9.666626 AATCGACTAAGATTTAGTTATGTCTCG 57.333 33.333 3.26 1.65 37.56 4.04
381 382 9.909644 GGCTAAATCTCAGTCGACTAATATTTA 57.090 33.333 19.57 22.10 0.00 1.40
382 383 8.421784 TGGCTAAATCTCAGTCGACTAATATTT 58.578 33.333 19.57 22.16 0.00 1.40
383 384 7.952671 TGGCTAAATCTCAGTCGACTAATATT 58.047 34.615 19.57 14.16 0.00 1.28
384 385 7.448777 TCTGGCTAAATCTCAGTCGACTAATAT 59.551 37.037 19.57 8.74 0.00 1.28
385 386 6.771267 TCTGGCTAAATCTCAGTCGACTAATA 59.229 38.462 19.57 6.56 0.00 0.98
386 387 5.594725 TCTGGCTAAATCTCAGTCGACTAAT 59.405 40.000 19.57 9.49 0.00 1.73
387 388 4.948004 TCTGGCTAAATCTCAGTCGACTAA 59.052 41.667 19.57 1.94 0.00 2.24
388 389 4.335874 GTCTGGCTAAATCTCAGTCGACTA 59.664 45.833 19.57 2.81 0.00 2.59
389 390 3.129638 GTCTGGCTAAATCTCAGTCGACT 59.870 47.826 13.58 13.58 0.00 4.18
390 391 3.129638 AGTCTGGCTAAATCTCAGTCGAC 59.870 47.826 7.70 7.70 0.00 4.20
391 392 3.129462 CAGTCTGGCTAAATCTCAGTCGA 59.871 47.826 0.00 0.00 0.00 4.20
392 393 3.129462 TCAGTCTGGCTAAATCTCAGTCG 59.871 47.826 0.00 0.00 0.00 4.18
393 394 4.081972 TGTCAGTCTGGCTAAATCTCAGTC 60.082 45.833 5.94 0.00 0.00 3.51
394 395 3.834813 TGTCAGTCTGGCTAAATCTCAGT 59.165 43.478 5.94 0.00 0.00 3.41
395 396 4.462508 TGTCAGTCTGGCTAAATCTCAG 57.537 45.455 5.94 0.00 0.00 3.35
396 397 4.890158 TTGTCAGTCTGGCTAAATCTCA 57.110 40.909 5.94 0.00 0.00 3.27
397 398 7.849804 TTATTTGTCAGTCTGGCTAAATCTC 57.150 36.000 14.22 0.00 0.00 2.75
400 401 9.851686 TGATATTATTTGTCAGTCTGGCTAAAT 57.148 29.630 5.94 11.68 0.00 1.40
401 402 9.851686 ATGATATTATTTGTCAGTCTGGCTAAA 57.148 29.630 5.94 5.41 0.00 1.85
402 403 9.851686 AATGATATTATTTGTCAGTCTGGCTAA 57.148 29.630 5.94 4.81 0.00 3.09
493 494 8.859156 CGTTTGATTTTCCATTATGATTTTCGT 58.141 29.630 0.00 0.00 0.00 3.85
494 495 7.840797 GCGTTTGATTTTCCATTATGATTTTCG 59.159 33.333 0.00 0.00 0.00 3.46
495 496 8.872845 AGCGTTTGATTTTCCATTATGATTTTC 58.127 29.630 0.00 0.00 0.00 2.29
496 497 8.776376 AGCGTTTGATTTTCCATTATGATTTT 57.224 26.923 0.00 0.00 0.00 1.82
497 498 7.492344 GGAGCGTTTGATTTTCCATTATGATTT 59.508 33.333 0.00 0.00 0.00 2.17
498 499 6.980397 GGAGCGTTTGATTTTCCATTATGATT 59.020 34.615 0.00 0.00 0.00 2.57
499 500 6.461509 GGGAGCGTTTGATTTTCCATTATGAT 60.462 38.462 0.00 0.00 0.00 2.45
500 501 5.163561 GGGAGCGTTTGATTTTCCATTATGA 60.164 40.000 0.00 0.00 0.00 2.15
501 502 5.043248 GGGAGCGTTTGATTTTCCATTATG 58.957 41.667 0.00 0.00 0.00 1.90
502 503 4.956075 AGGGAGCGTTTGATTTTCCATTAT 59.044 37.500 0.00 0.00 0.00 1.28
503 504 4.340617 AGGGAGCGTTTGATTTTCCATTA 58.659 39.130 0.00 0.00 0.00 1.90
504 505 3.165071 AGGGAGCGTTTGATTTTCCATT 58.835 40.909 0.00 0.00 0.00 3.16
505 506 2.807676 AGGGAGCGTTTGATTTTCCAT 58.192 42.857 0.00 0.00 0.00 3.41
506 507 2.286365 AGGGAGCGTTTGATTTTCCA 57.714 45.000 0.00 0.00 0.00 3.53
507 508 3.078837 TGTAGGGAGCGTTTGATTTTCC 58.921 45.455 0.00 0.00 0.00 3.13
508 509 4.965119 ATGTAGGGAGCGTTTGATTTTC 57.035 40.909 0.00 0.00 0.00 2.29
530 531 8.934023 ATACTTACTCCTCAAATCAAACCAAA 57.066 30.769 0.00 0.00 0.00 3.28
531 532 8.934023 AATACTTACTCCTCAAATCAAACCAA 57.066 30.769 0.00 0.00 0.00 3.67
532 533 8.160765 TGAATACTTACTCCTCAAATCAAACCA 58.839 33.333 0.00 0.00 0.00 3.67
533 534 8.451748 GTGAATACTTACTCCTCAAATCAAACC 58.548 37.037 0.00 0.00 0.00 3.27
534 535 9.220767 AGTGAATACTTACTCCTCAAATCAAAC 57.779 33.333 0.00 0.00 31.66 2.93
581 609 4.071423 ACAAATAAAACTGCAATTGGCCC 58.929 39.130 7.72 0.00 43.89 5.80
584 612 4.083377 GGCCACAAATAAAACTGCAATTGG 60.083 41.667 7.72 0.00 0.00 3.16
586 614 3.745458 CGGCCACAAATAAAACTGCAATT 59.255 39.130 2.24 0.00 0.00 2.32
587 615 3.244044 ACGGCCACAAATAAAACTGCAAT 60.244 39.130 2.24 0.00 0.00 3.56
597 625 0.036765 AGAAGCGACGGCCACAAATA 60.037 50.000 2.24 0.00 41.24 1.40
628 656 1.069596 CAAAAGGGCAAAAGCGGCT 59.930 52.632 0.00 0.00 0.00 5.52
698 726 1.406887 GGCGCTCCCAAGTCAAATCTA 60.407 52.381 7.64 0.00 0.00 1.98
730 758 1.488527 CCGTCCGATTAAGCTACTGC 58.511 55.000 0.00 0.00 40.05 4.40
882 916 2.425143 TGTGGGATTTGGAGAGATGC 57.575 50.000 0.00 0.00 0.00 3.91
973 1007 1.817209 GCGGCTAGCTAGTCTTGGT 59.183 57.895 22.42 0.00 44.04 3.67
1131 1166 2.918802 ACGGACGTACCTTGGCCA 60.919 61.111 0.00 0.00 36.31 5.36
1179 1243 0.593128 AACAGTTTCTCACATGCGGC 59.407 50.000 0.00 0.00 0.00 6.53
1256 1320 5.373222 TGGCATACGACAAGGCTAATTAAT 58.627 37.500 0.00 0.00 0.00 1.40
1363 1428 0.512518 GCGCAAACAAAATTCCCTGC 59.487 50.000 0.30 0.00 0.00 4.85
1775 2367 2.261361 CCGGTGATGCTGACGACA 59.739 61.111 0.00 0.00 0.00 4.35
1847 2439 1.872773 AGAAGAAGAAGGCGAGGGAT 58.127 50.000 0.00 0.00 0.00 3.85
1908 2500 2.342179 CAACAAACTTTGCCACGGTTT 58.658 42.857 1.14 0.00 34.10 3.27
1937 2529 1.005394 GAGAGAAAACGACCGGCCA 60.005 57.895 0.00 0.00 0.00 5.36
1996 2608 0.672889 TCCGTACAGTTTGCACCGTA 59.327 50.000 0.00 0.00 0.00 4.02
1997 2609 0.034337 ATCCGTACAGTTTGCACCGT 59.966 50.000 0.00 0.00 0.00 4.83
1998 2610 1.999048 TATCCGTACAGTTTGCACCG 58.001 50.000 0.00 0.00 0.00 4.94
1999 2611 4.155280 ACATTTATCCGTACAGTTTGCACC 59.845 41.667 0.00 0.00 0.00 5.01
2000 2612 5.291293 ACATTTATCCGTACAGTTTGCAC 57.709 39.130 0.00 0.00 0.00 4.57
2001 2613 5.390040 CGAACATTTATCCGTACAGTTTGCA 60.390 40.000 0.00 0.00 0.00 4.08
2092 2704 9.903682 GGAATAGAATACTTTGCGTATGTACTA 57.096 33.333 0.00 0.00 38.78 1.82
2093 2705 8.639761 AGGAATAGAATACTTTGCGTATGTACT 58.360 33.333 0.00 0.00 38.78 2.73
2094 2706 8.813643 AGGAATAGAATACTTTGCGTATGTAC 57.186 34.615 0.00 0.00 38.78 2.90
2096 2708 8.639761 ACTAGGAATAGAATACTTTGCGTATGT 58.360 33.333 0.00 0.00 38.78 2.29
2099 2711 9.123902 TGTACTAGGAATAGAATACTTTGCGTA 57.876 33.333 0.00 0.00 0.00 4.42
2100 2712 8.004087 TGTACTAGGAATAGAATACTTTGCGT 57.996 34.615 0.00 0.00 0.00 5.24
2110 2722 9.982651 GTTGCTTCATATGTACTAGGAATAGAA 57.017 33.333 1.90 0.00 30.31 2.10
2111 2723 9.368416 AGTTGCTTCATATGTACTAGGAATAGA 57.632 33.333 1.90 0.00 30.31 1.98
2112 2724 9.988815 AAGTTGCTTCATATGTACTAGGAATAG 57.011 33.333 1.90 0.00 30.31 1.73
2113 2725 9.764363 CAAGTTGCTTCATATGTACTAGGAATA 57.236 33.333 1.90 0.00 30.31 1.75
2114 2726 7.716998 CCAAGTTGCTTCATATGTACTAGGAAT 59.283 37.037 1.90 0.00 30.31 3.01
2115 2727 7.047891 CCAAGTTGCTTCATATGTACTAGGAA 58.952 38.462 1.90 1.92 0.00 3.36
2116 2728 6.156256 ACCAAGTTGCTTCATATGTACTAGGA 59.844 38.462 1.90 0.00 0.00 2.94
2117 2729 6.349300 ACCAAGTTGCTTCATATGTACTAGG 58.651 40.000 1.90 0.00 0.00 3.02
2118 2730 7.334421 ACAACCAAGTTGCTTCATATGTACTAG 59.666 37.037 7.36 0.00 46.20 2.57
2119 2731 7.165485 ACAACCAAGTTGCTTCATATGTACTA 58.835 34.615 7.36 0.00 46.20 1.82
2120 2732 6.003950 ACAACCAAGTTGCTTCATATGTACT 58.996 36.000 7.36 0.00 46.20 2.73
2180 2792 3.249799 CCAAAGTGAGCGTACATGACAAA 59.750 43.478 0.00 0.00 0.00 2.83
2349 2963 1.152290 TGGGGTCCGTGTTGGTAGA 60.152 57.895 0.00 0.00 39.52 2.59
2355 2969 2.770904 ACAGGTGGGGTCCGTGTT 60.771 61.111 0.00 0.00 0.00 3.32
2386 3000 6.198687 ACACAAATATGCACGTACAATATGC 58.801 36.000 0.00 0.00 39.88 3.14
2387 3001 8.522661 CAAACACAAATATGCACGTACAATATG 58.477 33.333 0.00 0.00 0.00 1.78
2389 3003 7.535599 CACAAACACAAATATGCACGTACAATA 59.464 33.333 0.00 0.00 0.00 1.90
2645 3468 7.148705 GCCGGAATTTGAACAACTAAAAATACC 60.149 37.037 5.05 0.00 0.00 2.73
2669 3498 0.105039 CCGGTCTAGAGTCCATTGCC 59.895 60.000 0.00 0.00 0.00 4.52
2717 3546 6.661377 TGAAGCCCATTAATTGTTAGCACTAA 59.339 34.615 0.00 0.00 0.00 2.24
2740 3569 0.107703 GATTCACATGGCCGGTCTGA 60.108 55.000 7.97 0.00 0.00 3.27
2842 3802 2.045536 GCTCCTGGCTGGTTCCTG 60.046 66.667 10.44 0.00 38.06 3.86
2843 3803 3.710722 CGCTCCTGGCTGGTTCCT 61.711 66.667 10.44 0.00 39.13 3.36
2844 3804 3.706373 TCGCTCCTGGCTGGTTCC 61.706 66.667 10.44 0.00 39.13 3.62
2845 3805 2.435059 GTCGCTCCTGGCTGGTTC 60.435 66.667 10.44 2.88 39.13 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.