Multiple sequence alignment - TraesCS6D01G192300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G192300 chr6D 100.000 4585 0 0 1 4585 266250310 266254894 0.000000e+00 8468
1 TraesCS6D01G192300 chr6D 87.298 433 53 2 2 433 292337350 292337781 1.150000e-135 494
2 TraesCS6D01G192300 chr6B 94.931 3137 106 27 1386 4486 413644292 413647411 0.000000e+00 4863
3 TraesCS6D01G192300 chr6B 91.304 874 28 15 521 1384 413643423 413644258 0.000000e+00 1149
4 TraesCS6D01G192300 chr6B 83.102 432 71 2 3 433 3321136 3321566 4.300000e-105 392
5 TraesCS6D01G192300 chr6B 95.604 91 3 1 4475 4565 413647693 413647782 1.330000e-30 145
6 TraesCS6D01G192300 chr6A 95.997 2573 80 15 1386 3941 377178598 377181164 0.000000e+00 4159
7 TraesCS6D01G192300 chr6A 94.290 648 23 4 3918 4565 377181461 377182094 0.000000e+00 979
8 TraesCS6D01G192300 chr6A 94.558 588 13 5 805 1384 377177984 377178560 0.000000e+00 891
9 TraesCS6D01G192300 chr6A 81.250 432 76 2 2 433 99460210 99459784 1.220000e-90 344
10 TraesCS6D01G192300 chr6A 86.626 329 13 10 491 799 377177551 377177868 7.350000e-88 335
11 TraesCS6D01G192300 chr3D 91.224 433 38 0 1 433 3820491 3820059 1.420000e-164 590
12 TraesCS6D01G192300 chr5D 87.991 433 52 0 1 433 332207995 332208427 3.160000e-141 512
13 TraesCS6D01G192300 chr7B 85.912 433 61 0 1 433 240379869 240380301 3.230000e-126 462
14 TraesCS6D01G192300 chr2B 85.714 427 58 3 8 433 254052401 254051977 9.050000e-122 448
15 TraesCS6D01G192300 chr2B 81.609 435 76 4 1 433 412786064 412785632 1.570000e-94 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G192300 chr6D 266250310 266254894 4584 False 8468.000000 8468 100.000000 1 4585 1 chr6D.!!$F1 4584
1 TraesCS6D01G192300 chr6B 413643423 413647782 4359 False 2052.333333 4863 93.946333 521 4565 3 chr6B.!!$F2 4044
2 TraesCS6D01G192300 chr6A 377177551 377182094 4543 False 1591.000000 4159 92.867750 491 4565 4 chr6A.!!$F1 4074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.028902 CACGATGTGGATGCAGCATG 59.971 55.0 14.22 0.00 40.87 4.06 F
365 366 0.042131 AGGTAGGACGGGAACATGGA 59.958 55.0 0.00 0.00 0.00 3.41 F
771 792 0.095417 CTTTAAGAGCGTCGCAAGCC 59.905 55.0 21.09 5.44 34.64 4.35 F
1485 1662 0.309302 TTGTGTTCGCGGTTGGAATG 59.691 50.0 6.13 0.00 0.00 2.67 F
1486 1663 0.533085 TGTGTTCGCGGTTGGAATGA 60.533 50.0 6.13 0.00 0.00 2.57 F
2045 2228 1.015085 TGGTGGCCGTAAAATCGACG 61.015 55.0 0.00 0.00 40.02 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1669 1.103803 CAGGGTCCGATCGAGAAGAA 58.896 55.000 18.66 0.00 0.00 2.52 R
2000 2183 1.378531 GCCAGAACATATCAACGCCA 58.621 50.000 0.00 0.00 0.00 5.69 R
2075 2258 3.856508 GCGTAAGTCTTGAGCGCA 58.143 55.556 11.47 0.00 46.23 6.09 R
2895 3087 0.179065 CTTGCTCATCTCCGGATGCA 60.179 55.000 3.57 8.34 46.41 3.96 R
3088 3280 1.647545 GCAGCGCCTTGATGTTGCTA 61.648 55.000 2.29 0.00 38.98 3.49 R
3882 4094 2.092968 TCCCGTGGAATTTCTCATCCAG 60.093 50.000 0.00 0.00 46.01 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.767230 CCGCGCGACAACTGTCTG 61.767 66.667 34.63 6.11 42.66 3.51
37 38 4.415501 CGCGCGACAACTGTCTGC 62.416 66.667 28.94 11.12 42.66 4.26
38 39 3.038417 GCGCGACAACTGTCTGCT 61.038 61.111 12.10 0.00 42.66 4.24
39 40 2.598632 GCGCGACAACTGTCTGCTT 61.599 57.895 12.10 0.00 42.66 3.91
40 41 1.934463 CGCGACAACTGTCTGCTTT 59.066 52.632 0.00 0.00 42.66 3.51
41 42 0.111089 CGCGACAACTGTCTGCTTTC 60.111 55.000 0.00 0.17 42.66 2.62
42 43 0.235926 GCGACAACTGTCTGCTTTCC 59.764 55.000 14.96 0.00 42.66 3.13
43 44 1.871080 CGACAACTGTCTGCTTTCCT 58.129 50.000 8.16 0.00 42.66 3.36
44 45 1.528586 CGACAACTGTCTGCTTTCCTG 59.471 52.381 8.16 0.00 42.66 3.86
45 46 1.876156 GACAACTGTCTGCTTTCCTGG 59.124 52.381 2.51 0.00 41.65 4.45
46 47 1.242076 CAACTGTCTGCTTTCCTGGG 58.758 55.000 0.00 0.00 0.00 4.45
47 48 0.538287 AACTGTCTGCTTTCCTGGGC 60.538 55.000 0.00 0.00 0.00 5.36
48 49 2.032528 TGTCTGCTTTCCTGGGCG 59.967 61.111 0.00 0.00 0.00 6.13
49 50 2.347490 GTCTGCTTTCCTGGGCGA 59.653 61.111 0.00 0.00 0.00 5.54
50 51 1.078143 GTCTGCTTTCCTGGGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
51 52 1.078214 TCTGCTTTCCTGGGCGATG 60.078 57.895 0.00 0.00 0.00 3.84
52 53 1.377725 CTGCTTTCCTGGGCGATGT 60.378 57.895 0.00 0.00 0.00 3.06
53 54 1.372087 CTGCTTTCCTGGGCGATGTC 61.372 60.000 0.00 0.00 0.00 3.06
54 55 2.464459 GCTTTCCTGGGCGATGTCG 61.464 63.158 0.00 0.00 43.27 4.35
55 56 1.218047 CTTTCCTGGGCGATGTCGA 59.782 57.895 6.60 0.00 43.02 4.20
56 57 0.807667 CTTTCCTGGGCGATGTCGAG 60.808 60.000 6.60 0.00 43.02 4.04
57 58 1.254975 TTTCCTGGGCGATGTCGAGA 61.255 55.000 6.60 0.00 43.02 4.04
58 59 1.945354 TTCCTGGGCGATGTCGAGAC 61.945 60.000 6.60 0.00 43.02 3.36
59 60 2.278206 CTGGGCGATGTCGAGACG 60.278 66.667 6.60 0.00 43.02 4.18
64 65 4.765611 CGATGTCGAGACGCAGAA 57.234 55.556 0.00 0.00 43.02 3.02
65 66 3.242268 CGATGTCGAGACGCAGAAT 57.758 52.632 0.00 0.00 43.02 2.40
66 67 0.842613 CGATGTCGAGACGCAGAATG 59.157 55.000 0.00 0.00 43.02 2.67
67 68 1.531883 CGATGTCGAGACGCAGAATGA 60.532 52.381 0.00 0.00 43.02 2.57
68 69 2.736978 GATGTCGAGACGCAGAATGAT 58.263 47.619 0.00 0.00 39.69 2.45
69 70 2.194800 TGTCGAGACGCAGAATGATC 57.805 50.000 0.00 0.00 39.69 2.92
70 71 1.745653 TGTCGAGACGCAGAATGATCT 59.254 47.619 0.00 0.00 39.69 2.75
71 72 2.223363 TGTCGAGACGCAGAATGATCTC 60.223 50.000 0.00 0.00 42.87 2.75
73 74 2.483583 GAGACGCAGAATGATCTCGT 57.516 50.000 0.00 0.00 39.18 4.18
74 75 2.803451 GAGACGCAGAATGATCTCGTT 58.197 47.619 0.00 0.00 39.18 3.85
75 76 2.533535 GAGACGCAGAATGATCTCGTTG 59.466 50.000 0.00 0.00 39.18 4.10
76 77 1.590238 GACGCAGAATGATCTCGTTGG 59.410 52.381 0.00 0.00 39.69 3.77
77 78 0.302890 CGCAGAATGATCTCGTTGGC 59.697 55.000 0.00 0.00 39.69 4.52
78 79 0.659957 GCAGAATGATCTCGTTGGCC 59.340 55.000 0.00 0.00 39.69 5.36
79 80 2.013563 GCAGAATGATCTCGTTGGCCA 61.014 52.381 0.00 0.00 39.69 5.36
80 81 2.569059 CAGAATGATCTCGTTGGCCAT 58.431 47.619 6.09 0.00 39.69 4.40
81 82 2.289820 CAGAATGATCTCGTTGGCCATG 59.710 50.000 6.09 1.84 39.69 3.66
82 83 2.092753 AGAATGATCTCGTTGGCCATGT 60.093 45.455 6.09 0.00 0.00 3.21
83 84 1.671979 ATGATCTCGTTGGCCATGTG 58.328 50.000 6.09 3.51 0.00 3.21
84 85 1.026182 TGATCTCGTTGGCCATGTGC 61.026 55.000 6.09 0.00 40.16 4.57
85 86 1.002257 ATCTCGTTGGCCATGTGCA 60.002 52.632 6.09 0.00 43.89 4.57
86 87 0.394762 ATCTCGTTGGCCATGTGCAT 60.395 50.000 6.09 0.00 43.89 3.96
87 88 1.026182 TCTCGTTGGCCATGTGCATC 61.026 55.000 6.09 0.00 43.89 3.91
88 89 1.002257 TCGTTGGCCATGTGCATCT 60.002 52.632 6.09 0.00 43.89 2.90
89 90 1.138036 CGTTGGCCATGTGCATCTG 59.862 57.895 6.09 0.00 43.89 2.90
90 91 1.514087 GTTGGCCATGTGCATCTGG 59.486 57.895 6.09 12.01 43.89 3.86
91 92 0.966875 GTTGGCCATGTGCATCTGGA 60.967 55.000 18.75 0.00 43.89 3.86
92 93 0.681887 TTGGCCATGTGCATCTGGAG 60.682 55.000 18.75 0.00 43.89 3.86
93 94 2.487532 GGCCATGTGCATCTGGAGC 61.488 63.158 18.75 5.02 43.89 4.70
94 95 2.487532 GCCATGTGCATCTGGAGCC 61.488 63.158 18.75 0.97 40.77 4.70
95 96 1.226542 CCATGTGCATCTGGAGCCT 59.773 57.895 11.11 0.00 34.24 4.58
96 97 0.395311 CCATGTGCATCTGGAGCCTT 60.395 55.000 11.11 0.00 34.24 4.35
97 98 0.738975 CATGTGCATCTGGAGCCTTG 59.261 55.000 0.00 0.00 0.00 3.61
98 99 0.330604 ATGTGCATCTGGAGCCTTGT 59.669 50.000 0.00 0.00 0.00 3.16
99 100 0.321919 TGTGCATCTGGAGCCTTGTC 60.322 55.000 0.00 0.00 0.00 3.18
100 101 0.035630 GTGCATCTGGAGCCTTGTCT 60.036 55.000 0.00 0.00 0.00 3.41
101 102 0.251354 TGCATCTGGAGCCTTGTCTC 59.749 55.000 0.00 0.00 0.00 3.36
102 103 0.809241 GCATCTGGAGCCTTGTCTCG 60.809 60.000 0.00 0.00 33.98 4.04
103 104 0.809241 CATCTGGAGCCTTGTCTCGC 60.809 60.000 0.00 0.00 33.98 5.03
104 105 0.975040 ATCTGGAGCCTTGTCTCGCT 60.975 55.000 0.00 0.00 38.27 4.93
105 106 1.447489 CTGGAGCCTTGTCTCGCTG 60.447 63.158 0.00 0.00 34.84 5.18
106 107 1.881903 CTGGAGCCTTGTCTCGCTGA 61.882 60.000 0.00 0.00 34.84 4.26
107 108 1.293498 GGAGCCTTGTCTCGCTGAA 59.707 57.895 0.00 0.00 34.84 3.02
108 109 0.739112 GGAGCCTTGTCTCGCTGAAG 60.739 60.000 0.00 0.00 34.84 3.02
109 110 0.244994 GAGCCTTGTCTCGCTGAAGA 59.755 55.000 0.00 0.00 34.84 2.87
110 111 0.681733 AGCCTTGTCTCGCTGAAGAA 59.318 50.000 0.00 0.00 32.98 2.52
111 112 1.070758 AGCCTTGTCTCGCTGAAGAAA 59.929 47.619 0.00 0.00 32.98 2.52
112 113 1.195674 GCCTTGTCTCGCTGAAGAAAC 59.804 52.381 0.00 0.00 0.00 2.78
113 114 1.801178 CCTTGTCTCGCTGAAGAAACC 59.199 52.381 0.00 0.00 0.00 3.27
114 115 2.548920 CCTTGTCTCGCTGAAGAAACCT 60.549 50.000 0.00 0.00 0.00 3.50
115 116 2.910688 TGTCTCGCTGAAGAAACCTT 57.089 45.000 0.00 0.00 0.00 3.50
116 117 3.194005 TGTCTCGCTGAAGAAACCTTT 57.806 42.857 0.00 0.00 0.00 3.11
117 118 4.330944 TGTCTCGCTGAAGAAACCTTTA 57.669 40.909 0.00 0.00 0.00 1.85
118 119 4.307432 TGTCTCGCTGAAGAAACCTTTAG 58.693 43.478 0.00 0.00 32.34 1.85
119 120 3.123790 GTCTCGCTGAAGAAACCTTTAGC 59.876 47.826 10.65 10.65 44.80 3.09
120 121 2.416893 CTCGCTGAAGAAACCTTTAGCC 59.583 50.000 13.76 1.01 45.19 3.93
121 122 1.468914 CGCTGAAGAAACCTTTAGCCC 59.531 52.381 13.76 0.00 45.19 5.19
122 123 2.514803 GCTGAAGAAACCTTTAGCCCA 58.485 47.619 9.83 0.00 43.42 5.36
123 124 2.890945 GCTGAAGAAACCTTTAGCCCAA 59.109 45.455 9.83 0.00 43.42 4.12
124 125 3.320826 GCTGAAGAAACCTTTAGCCCAAA 59.679 43.478 9.83 0.00 43.42 3.28
125 126 4.021104 GCTGAAGAAACCTTTAGCCCAAAT 60.021 41.667 9.83 0.00 43.42 2.32
126 127 5.714047 CTGAAGAAACCTTTAGCCCAAATC 58.286 41.667 0.00 0.00 0.00 2.17
127 128 5.393866 TGAAGAAACCTTTAGCCCAAATCT 58.606 37.500 0.00 0.00 0.00 2.40
128 129 5.838521 TGAAGAAACCTTTAGCCCAAATCTT 59.161 36.000 0.00 0.00 28.81 2.40
129 130 5.984695 AGAAACCTTTAGCCCAAATCTTC 57.015 39.130 0.00 0.00 0.00 2.87
130 131 5.393866 AGAAACCTTTAGCCCAAATCTTCA 58.606 37.500 0.00 0.00 0.00 3.02
131 132 5.478332 AGAAACCTTTAGCCCAAATCTTCAG 59.522 40.000 0.00 0.00 0.00 3.02
132 133 3.701664 ACCTTTAGCCCAAATCTTCAGG 58.298 45.455 0.00 0.00 0.00 3.86
133 134 3.076032 ACCTTTAGCCCAAATCTTCAGGT 59.924 43.478 0.00 0.00 0.00 4.00
134 135 4.089361 CCTTTAGCCCAAATCTTCAGGTT 58.911 43.478 0.00 0.00 0.00 3.50
135 136 4.158579 CCTTTAGCCCAAATCTTCAGGTTC 59.841 45.833 0.00 0.00 0.00 3.62
136 137 4.657814 TTAGCCCAAATCTTCAGGTTCT 57.342 40.909 0.00 0.00 0.00 3.01
137 138 3.532641 AGCCCAAATCTTCAGGTTCTT 57.467 42.857 0.00 0.00 0.00 2.52
138 139 4.657814 AGCCCAAATCTTCAGGTTCTTA 57.342 40.909 0.00 0.00 0.00 2.10
139 140 4.593956 AGCCCAAATCTTCAGGTTCTTAG 58.406 43.478 0.00 0.00 0.00 2.18
140 141 3.129462 GCCCAAATCTTCAGGTTCTTAGC 59.871 47.826 0.00 0.00 0.00 3.09
141 142 3.696548 CCCAAATCTTCAGGTTCTTAGCC 59.303 47.826 0.00 0.00 0.00 3.93
142 143 3.375299 CCAAATCTTCAGGTTCTTAGCCG 59.625 47.826 0.00 0.00 0.00 5.52
143 144 2.317530 ATCTTCAGGTTCTTAGCCGC 57.682 50.000 0.00 0.00 0.00 6.53
144 145 1.267121 TCTTCAGGTTCTTAGCCGCT 58.733 50.000 0.00 0.00 0.00 5.52
145 146 1.204941 TCTTCAGGTTCTTAGCCGCTC 59.795 52.381 0.00 0.00 0.00 5.03
146 147 1.205893 CTTCAGGTTCTTAGCCGCTCT 59.794 52.381 0.00 0.00 0.00 4.09
147 148 2.139323 TCAGGTTCTTAGCCGCTCTA 57.861 50.000 0.00 0.00 0.00 2.43
148 149 2.025155 TCAGGTTCTTAGCCGCTCTAG 58.975 52.381 0.00 0.00 0.00 2.43
149 150 0.747852 AGGTTCTTAGCCGCTCTAGC 59.252 55.000 0.00 0.00 37.78 3.42
150 151 0.460311 GGTTCTTAGCCGCTCTAGCA 59.540 55.000 0.00 0.00 42.21 3.49
151 152 1.134788 GGTTCTTAGCCGCTCTAGCAA 60.135 52.381 0.00 0.00 42.21 3.91
152 153 2.197577 GTTCTTAGCCGCTCTAGCAAG 58.802 52.381 0.00 0.00 42.21 4.01
153 154 1.475403 TCTTAGCCGCTCTAGCAAGT 58.525 50.000 0.00 0.00 42.21 3.16
154 155 1.825474 TCTTAGCCGCTCTAGCAAGTT 59.175 47.619 0.00 0.00 42.21 2.66
155 156 2.233922 TCTTAGCCGCTCTAGCAAGTTT 59.766 45.455 0.00 0.00 42.21 2.66
156 157 2.295253 TAGCCGCTCTAGCAAGTTTC 57.705 50.000 0.00 0.00 42.21 2.78
157 158 0.321671 AGCCGCTCTAGCAAGTTTCA 59.678 50.000 2.44 0.00 42.21 2.69
158 159 0.444260 GCCGCTCTAGCAAGTTTCAC 59.556 55.000 2.44 0.00 42.21 3.18
159 160 0.716108 CCGCTCTAGCAAGTTTCACG 59.284 55.000 2.44 0.00 42.21 4.35
160 161 1.419374 CGCTCTAGCAAGTTTCACGT 58.581 50.000 2.44 0.00 42.21 4.49
161 162 1.792949 CGCTCTAGCAAGTTTCACGTT 59.207 47.619 2.44 0.00 42.21 3.99
162 163 2.410262 CGCTCTAGCAAGTTTCACGTTG 60.410 50.000 2.44 0.00 42.21 4.10
163 164 2.800544 GCTCTAGCAAGTTTCACGTTGA 59.199 45.455 0.00 0.00 41.59 3.18
164 165 3.120854 GCTCTAGCAAGTTTCACGTTGAG 60.121 47.826 0.00 0.00 41.59 3.02
165 166 4.299155 CTCTAGCAAGTTTCACGTTGAGA 58.701 43.478 0.00 0.00 0.00 3.27
166 167 4.049186 TCTAGCAAGTTTCACGTTGAGAC 58.951 43.478 0.00 0.00 32.26 3.36
175 176 3.862124 CGTTGAGACGCTGGAAGG 58.138 61.111 0.00 0.00 43.03 3.46
176 177 2.383527 CGTTGAGACGCTGGAAGGC 61.384 63.158 0.00 0.00 43.03 4.35
200 201 3.834799 GGAGGCGACCGGACGATT 61.835 66.667 29.83 15.98 35.09 3.34
201 202 2.278661 GAGGCGACCGGACGATTC 60.279 66.667 29.83 20.11 35.09 2.52
202 203 3.769875 GAGGCGACCGGACGATTCC 62.770 68.421 29.83 20.19 38.77 3.01
203 204 4.137872 GGCGACCGGACGATTCCA 62.138 66.667 29.83 0.00 43.00 3.53
204 205 2.884207 GCGACCGGACGATTCCAC 60.884 66.667 29.83 7.06 43.00 4.02
205 206 2.578713 CGACCGGACGATTCCACG 60.579 66.667 21.84 1.90 43.00 4.94
206 207 2.884207 GACCGGACGATTCCACGC 60.884 66.667 9.46 0.00 43.00 5.34
207 208 3.636313 GACCGGACGATTCCACGCA 62.636 63.158 9.46 0.00 43.00 5.24
208 209 2.202878 CCGGACGATTCCACGCAT 60.203 61.111 0.00 0.00 43.00 4.73
209 210 2.525248 CCGGACGATTCCACGCATG 61.525 63.158 0.00 0.00 43.00 4.06
210 211 2.709475 GGACGATTCCACGCATGC 59.291 61.111 7.91 7.91 42.30 4.06
211 212 1.815421 GGACGATTCCACGCATGCT 60.815 57.895 17.13 0.00 42.30 3.79
212 213 1.349627 GACGATTCCACGCATGCTG 59.650 57.895 17.13 12.61 36.70 4.41
213 214 2.040213 GACGATTCCACGCATGCTGG 62.040 60.000 22.81 22.81 36.70 4.85
214 215 1.815003 CGATTCCACGCATGCTGGA 60.815 57.895 25.68 25.68 35.91 3.86
215 216 1.723870 GATTCCACGCATGCTGGAC 59.276 57.895 27.90 18.46 37.54 4.02
216 217 1.718757 GATTCCACGCATGCTGGACC 61.719 60.000 27.90 21.08 37.54 4.46
217 218 4.758251 TCCACGCATGCTGGACCG 62.758 66.667 25.68 9.95 32.52 4.79
219 220 3.792047 CACGCATGCTGGACCGTG 61.792 66.667 17.13 11.26 43.83 4.94
220 221 4.002506 ACGCATGCTGGACCGTGA 62.003 61.111 17.13 0.00 32.07 4.35
221 222 2.512286 CGCATGCTGGACCGTGAT 60.512 61.111 17.13 0.00 0.00 3.06
222 223 2.816360 CGCATGCTGGACCGTGATG 61.816 63.158 17.13 0.00 0.00 3.07
223 224 1.746615 GCATGCTGGACCGTGATGT 60.747 57.895 11.37 0.00 0.00 3.06
224 225 1.985447 GCATGCTGGACCGTGATGTG 61.985 60.000 11.37 0.00 0.00 3.21
225 226 1.078214 ATGCTGGACCGTGATGTGG 60.078 57.895 0.00 0.00 0.00 4.17
226 227 1.552799 ATGCTGGACCGTGATGTGGA 61.553 55.000 0.00 0.00 0.00 4.02
227 228 1.003839 GCTGGACCGTGATGTGGAA 60.004 57.895 0.00 0.00 0.00 3.53
228 229 0.392998 GCTGGACCGTGATGTGGAAT 60.393 55.000 0.00 0.00 0.00 3.01
229 230 1.656652 CTGGACCGTGATGTGGAATC 58.343 55.000 0.00 0.00 0.00 2.52
230 231 0.108377 TGGACCGTGATGTGGAATCG 60.108 55.000 0.00 0.00 0.00 3.34
231 232 0.174845 GGACCGTGATGTGGAATCGA 59.825 55.000 0.00 0.00 0.00 3.59
232 233 1.560923 GACCGTGATGTGGAATCGAG 58.439 55.000 0.00 0.00 0.00 4.04
233 234 0.175760 ACCGTGATGTGGAATCGAGG 59.824 55.000 0.00 0.00 0.00 4.63
234 235 0.530650 CCGTGATGTGGAATCGAGGG 60.531 60.000 0.00 0.00 0.00 4.30
235 236 0.459899 CGTGATGTGGAATCGAGGGA 59.540 55.000 0.00 0.00 0.00 4.20
236 237 1.134818 CGTGATGTGGAATCGAGGGAA 60.135 52.381 0.00 0.00 0.00 3.97
237 238 2.676750 CGTGATGTGGAATCGAGGGAAA 60.677 50.000 0.00 0.00 0.00 3.13
238 239 2.939103 GTGATGTGGAATCGAGGGAAAG 59.061 50.000 0.00 0.00 0.00 2.62
239 240 2.092968 TGATGTGGAATCGAGGGAAAGG 60.093 50.000 0.00 0.00 0.00 3.11
240 241 0.035439 TGTGGAATCGAGGGAAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
241 242 1.090052 GTGGAATCGAGGGAAAGGCG 61.090 60.000 0.00 0.00 0.00 5.52
242 243 1.523938 GGAATCGAGGGAAAGGCGG 60.524 63.158 0.00 0.00 0.00 6.13
243 244 2.124695 AATCGAGGGAAAGGCGGC 60.125 61.111 0.00 0.00 0.00 6.53
244 245 2.595009 GAATCGAGGGAAAGGCGGCT 62.595 60.000 5.25 5.25 0.00 5.52
245 246 1.335132 AATCGAGGGAAAGGCGGCTA 61.335 55.000 13.71 0.00 0.00 3.93
246 247 1.749334 ATCGAGGGAAAGGCGGCTAG 61.749 60.000 13.71 0.00 0.00 3.42
247 248 2.423898 CGAGGGAAAGGCGGCTAGA 61.424 63.158 13.71 0.00 0.00 2.43
248 249 1.905512 GAGGGAAAGGCGGCTAGAA 59.094 57.895 13.71 0.00 0.00 2.10
249 250 0.179070 GAGGGAAAGGCGGCTAGAAG 60.179 60.000 13.71 0.00 0.00 2.85
250 251 1.153147 GGGAAAGGCGGCTAGAAGG 60.153 63.158 13.71 0.00 0.00 3.46
251 252 1.623542 GGGAAAGGCGGCTAGAAGGA 61.624 60.000 13.71 0.00 0.00 3.36
252 253 0.470341 GGAAAGGCGGCTAGAAGGAT 59.530 55.000 13.71 0.00 0.00 3.24
253 254 1.134068 GGAAAGGCGGCTAGAAGGATT 60.134 52.381 13.71 0.00 0.00 3.01
270 271 1.648174 TTCGAAACGAAAACGGGCC 59.352 52.632 0.00 0.00 43.00 5.80
271 272 2.103581 TTCGAAACGAAAACGGGCCG 62.104 55.000 27.06 27.06 43.00 6.13
272 273 2.427905 GAAACGAAAACGGGCCGC 60.428 61.111 28.71 8.75 0.00 6.53
273 274 4.316571 AAACGAAAACGGGCCGCG 62.317 61.111 28.71 23.41 0.00 6.46
293 294 3.512516 GCGGGGTGCAGATGCTTC 61.513 66.667 6.35 0.00 45.45 3.86
294 295 2.825836 CGGGGTGCAGATGCTTCC 60.826 66.667 6.35 8.43 42.66 3.46
295 296 2.825836 GGGGTGCAGATGCTTCCG 60.826 66.667 6.35 0.00 42.66 4.30
296 297 2.268920 GGGTGCAGATGCTTCCGA 59.731 61.111 6.35 0.00 42.66 4.55
297 298 2.109126 GGGTGCAGATGCTTCCGAC 61.109 63.158 6.35 0.00 42.66 4.79
298 299 1.375908 GGTGCAGATGCTTCCGACA 60.376 57.895 6.35 0.00 42.66 4.35
299 300 1.364626 GGTGCAGATGCTTCCGACAG 61.365 60.000 6.35 0.00 42.66 3.51
300 301 1.742880 TGCAGATGCTTCCGACAGC 60.743 57.895 6.35 0.00 42.66 4.40
305 306 2.110835 TGCTTCCGACAGCAGCAA 59.889 55.556 4.52 0.00 45.14 3.91
306 307 1.962822 TGCTTCCGACAGCAGCAAG 60.963 57.895 4.52 0.00 45.14 4.01
307 308 2.684843 GCTTCCGACAGCAGCAAGG 61.685 63.158 0.00 0.00 39.83 3.61
308 309 2.032528 TTCCGACAGCAGCAAGGG 59.967 61.111 0.00 0.00 0.00 3.95
309 310 3.551496 TTCCGACAGCAGCAAGGGG 62.551 63.158 0.00 0.00 0.00 4.79
319 320 3.451894 GCAAGGGGCAATGGTCGG 61.452 66.667 0.00 0.00 43.97 4.79
320 321 2.354729 CAAGGGGCAATGGTCGGA 59.645 61.111 0.00 0.00 0.00 4.55
321 322 1.750399 CAAGGGGCAATGGTCGGAG 60.750 63.158 0.00 0.00 0.00 4.63
322 323 3.645268 AAGGGGCAATGGTCGGAGC 62.645 63.158 0.00 0.00 0.00 4.70
323 324 4.424711 GGGGCAATGGTCGGAGCA 62.425 66.667 12.80 12.80 0.00 4.26
324 325 3.134127 GGGCAATGGTCGGAGCAC 61.134 66.667 12.67 0.00 0.00 4.40
325 326 3.499737 GGCAATGGTCGGAGCACG 61.500 66.667 12.67 7.98 46.11 5.34
335 336 3.414272 GGAGCACGATGTGGATGC 58.586 61.111 0.00 0.00 39.74 3.91
336 337 1.450134 GGAGCACGATGTGGATGCA 60.450 57.895 0.00 0.00 41.97 3.96
337 338 1.434622 GGAGCACGATGTGGATGCAG 61.435 60.000 0.00 0.00 41.97 4.41
338 339 2.044832 GAGCACGATGTGGATGCAGC 62.045 60.000 0.00 0.00 41.97 5.25
339 340 2.400962 GCACGATGTGGATGCAGCA 61.401 57.895 3.51 0.00 39.23 4.41
340 341 1.721664 GCACGATGTGGATGCAGCAT 61.722 55.000 7.91 7.91 39.23 3.79
341 342 0.028902 CACGATGTGGATGCAGCATG 59.971 55.000 14.22 0.00 40.87 4.06
342 343 1.099295 ACGATGTGGATGCAGCATGG 61.099 55.000 14.22 4.26 35.86 3.66
343 344 0.816421 CGATGTGGATGCAGCATGGA 60.816 55.000 14.22 0.00 44.23 3.41
344 345 0.952280 GATGTGGATGCAGCATGGAG 59.048 55.000 14.22 0.00 42.42 3.86
345 346 0.549469 ATGTGGATGCAGCATGGAGA 59.451 50.000 14.22 0.00 42.42 3.71
346 347 0.328926 TGTGGATGCAGCATGGAGAA 59.671 50.000 14.22 0.00 42.42 2.87
347 348 1.022735 GTGGATGCAGCATGGAGAAG 58.977 55.000 14.22 0.00 42.42 2.85
348 349 0.106868 TGGATGCAGCATGGAGAAGG 60.107 55.000 14.22 0.00 42.42 3.46
349 350 0.106819 GGATGCAGCATGGAGAAGGT 60.107 55.000 14.22 0.00 42.42 3.50
350 351 1.141657 GGATGCAGCATGGAGAAGGTA 59.858 52.381 14.22 0.00 42.42 3.08
351 352 2.492012 GATGCAGCATGGAGAAGGTAG 58.508 52.381 14.22 0.00 42.42 3.18
352 353 0.543277 TGCAGCATGGAGAAGGTAGG 59.457 55.000 0.00 0.00 35.86 3.18
353 354 0.833287 GCAGCATGGAGAAGGTAGGA 59.167 55.000 0.00 0.00 35.86 2.94
354 355 1.474143 GCAGCATGGAGAAGGTAGGAC 60.474 57.143 0.00 0.00 35.86 3.85
355 356 1.115467 AGCATGGAGAAGGTAGGACG 58.885 55.000 0.00 0.00 0.00 4.79
356 357 0.105039 GCATGGAGAAGGTAGGACGG 59.895 60.000 0.00 0.00 0.00 4.79
357 358 0.753262 CATGGAGAAGGTAGGACGGG 59.247 60.000 0.00 0.00 0.00 5.28
358 359 0.635009 ATGGAGAAGGTAGGACGGGA 59.365 55.000 0.00 0.00 0.00 5.14
359 360 0.410663 TGGAGAAGGTAGGACGGGAA 59.589 55.000 0.00 0.00 0.00 3.97
360 361 0.822811 GGAGAAGGTAGGACGGGAAC 59.177 60.000 0.00 0.00 0.00 3.62
361 362 1.553706 GAGAAGGTAGGACGGGAACA 58.446 55.000 0.00 0.00 0.00 3.18
362 363 2.108970 GAGAAGGTAGGACGGGAACAT 58.891 52.381 0.00 0.00 0.00 2.71
363 364 1.831736 AGAAGGTAGGACGGGAACATG 59.168 52.381 0.00 0.00 0.00 3.21
364 365 0.909623 AAGGTAGGACGGGAACATGG 59.090 55.000 0.00 0.00 0.00 3.66
365 366 0.042131 AGGTAGGACGGGAACATGGA 59.958 55.000 0.00 0.00 0.00 3.41
366 367 0.464452 GGTAGGACGGGAACATGGAG 59.536 60.000 0.00 0.00 0.00 3.86
367 368 0.179081 GTAGGACGGGAACATGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
368 369 0.325296 TAGGACGGGAACATGGAGCT 60.325 55.000 0.00 0.00 0.00 4.09
369 370 1.153349 GGACGGGAACATGGAGCTC 60.153 63.158 4.71 4.71 0.00 4.09
370 371 1.153349 GACGGGAACATGGAGCTCC 60.153 63.158 26.78 26.78 0.00 4.70
379 380 3.499406 TGGAGCTCCAAGCCACAT 58.501 55.556 33.41 0.00 43.77 3.21
380 381 1.769665 TGGAGCTCCAAGCCACATT 59.230 52.632 33.41 0.00 43.77 2.71
381 382 0.609957 TGGAGCTCCAAGCCACATTG 60.610 55.000 33.41 0.00 43.77 2.82
382 383 1.509923 GAGCTCCAAGCCACATTGC 59.490 57.895 0.87 0.00 43.77 3.56
383 384 1.228644 AGCTCCAAGCCACATTGCA 60.229 52.632 0.00 0.00 43.77 4.08
384 385 1.214589 GCTCCAAGCCACATTGCAG 59.785 57.895 0.00 0.00 34.48 4.41
385 386 1.246056 GCTCCAAGCCACATTGCAGA 61.246 55.000 0.00 0.00 34.48 4.26
386 387 1.250328 CTCCAAGCCACATTGCAGAA 58.750 50.000 0.00 0.00 0.00 3.02
387 388 1.201647 CTCCAAGCCACATTGCAGAAG 59.798 52.381 0.00 0.00 0.00 2.85
388 389 0.963962 CCAAGCCACATTGCAGAAGT 59.036 50.000 0.00 0.00 0.00 3.01
389 390 2.161855 CCAAGCCACATTGCAGAAGTA 58.838 47.619 0.00 0.00 0.00 2.24
390 391 2.095059 CCAAGCCACATTGCAGAAGTAC 60.095 50.000 0.00 0.00 0.00 2.73
391 392 2.816087 CAAGCCACATTGCAGAAGTACT 59.184 45.455 0.00 0.00 0.00 2.73
392 393 3.146104 AGCCACATTGCAGAAGTACTT 57.854 42.857 8.13 8.13 0.00 2.24
393 394 2.816087 AGCCACATTGCAGAAGTACTTG 59.184 45.455 14.14 0.84 0.00 3.16
394 395 2.554032 GCCACATTGCAGAAGTACTTGT 59.446 45.455 14.14 6.06 0.00 3.16
395 396 3.365364 GCCACATTGCAGAAGTACTTGTC 60.365 47.826 14.14 0.00 0.00 3.18
396 397 4.067896 CCACATTGCAGAAGTACTTGTCT 58.932 43.478 14.14 1.45 0.00 3.41
397 398 5.237815 CCACATTGCAGAAGTACTTGTCTA 58.762 41.667 14.14 0.00 0.00 2.59
398 399 5.877012 CCACATTGCAGAAGTACTTGTCTAT 59.123 40.000 14.14 3.55 0.00 1.98
399 400 6.183360 CCACATTGCAGAAGTACTTGTCTATG 60.183 42.308 14.14 15.75 0.00 2.23
400 401 5.352569 ACATTGCAGAAGTACTTGTCTATGC 59.647 40.000 14.14 14.44 0.00 3.14
401 402 4.808414 TGCAGAAGTACTTGTCTATGCT 57.192 40.909 14.14 0.00 32.58 3.79
402 403 5.914898 TGCAGAAGTACTTGTCTATGCTA 57.085 39.130 14.14 4.28 32.58 3.49
403 404 6.280855 TGCAGAAGTACTTGTCTATGCTAA 57.719 37.500 14.14 0.00 32.58 3.09
404 405 6.100004 TGCAGAAGTACTTGTCTATGCTAAC 58.900 40.000 14.14 0.00 32.58 2.34
405 406 6.071334 TGCAGAAGTACTTGTCTATGCTAACT 60.071 38.462 14.14 0.00 32.58 2.24
406 407 7.122204 TGCAGAAGTACTTGTCTATGCTAACTA 59.878 37.037 14.14 0.00 32.58 2.24
407 408 7.646130 GCAGAAGTACTTGTCTATGCTAACTAG 59.354 40.741 14.14 0.00 0.00 2.57
408 409 8.132362 CAGAAGTACTTGTCTATGCTAACTAGG 58.868 40.741 14.14 0.00 0.00 3.02
409 410 6.963083 AGTACTTGTCTATGCTAACTAGGG 57.037 41.667 0.00 0.00 0.00 3.53
410 411 6.433441 AGTACTTGTCTATGCTAACTAGGGT 58.567 40.000 0.00 0.00 0.00 4.34
411 412 6.896307 AGTACTTGTCTATGCTAACTAGGGTT 59.104 38.462 0.00 0.00 39.26 4.11
412 413 5.978814 ACTTGTCTATGCTAACTAGGGTTG 58.021 41.667 0.00 0.00 36.92 3.77
413 414 5.104900 ACTTGTCTATGCTAACTAGGGTTGG 60.105 44.000 0.00 0.00 36.92 3.77
414 415 4.616553 TGTCTATGCTAACTAGGGTTGGA 58.383 43.478 0.00 0.00 36.24 3.53
415 416 4.649674 TGTCTATGCTAACTAGGGTTGGAG 59.350 45.833 0.00 0.00 36.24 3.86
416 417 4.894114 GTCTATGCTAACTAGGGTTGGAGA 59.106 45.833 0.00 0.00 36.24 3.71
417 418 4.894114 TCTATGCTAACTAGGGTTGGAGAC 59.106 45.833 0.00 0.00 36.24 3.36
418 419 1.822990 TGCTAACTAGGGTTGGAGACG 59.177 52.381 0.00 0.00 36.24 4.18
419 420 1.823610 GCTAACTAGGGTTGGAGACGT 59.176 52.381 0.00 0.00 36.24 4.34
420 421 2.416972 GCTAACTAGGGTTGGAGACGTG 60.417 54.545 0.00 0.00 36.24 4.49
421 422 0.320697 AACTAGGGTTGGAGACGTGC 59.679 55.000 0.00 0.00 33.96 5.34
422 423 1.153823 CTAGGGTTGGAGACGTGCG 60.154 63.158 0.00 0.00 0.00 5.34
423 424 1.874345 CTAGGGTTGGAGACGTGCGT 61.874 60.000 0.00 0.00 0.00 5.24
424 425 1.466025 TAGGGTTGGAGACGTGCGTT 61.466 55.000 0.00 0.00 0.00 4.84
425 426 2.315386 GGGTTGGAGACGTGCGTTC 61.315 63.158 0.00 0.00 0.00 3.95
426 427 2.654912 GGTTGGAGACGTGCGTTCG 61.655 63.158 0.00 0.43 0.00 3.95
427 428 1.947642 GTTGGAGACGTGCGTTCGT 60.948 57.895 0.00 6.72 46.88 3.85
428 429 1.227031 TTGGAGACGTGCGTTCGTT 60.227 52.632 0.00 0.46 44.21 3.85
429 430 1.484227 TTGGAGACGTGCGTTCGTTG 61.484 55.000 0.00 0.00 44.21 4.10
430 431 2.167918 GAGACGTGCGTTCGTTGC 59.832 61.111 0.00 1.63 44.21 4.17
431 432 2.279252 AGACGTGCGTTCGTTGCT 60.279 55.556 0.00 0.60 44.21 3.91
432 433 2.167918 GACGTGCGTTCGTTGCTC 59.832 61.111 0.00 0.00 44.21 4.26
433 434 2.279252 ACGTGCGTTCGTTGCTCT 60.279 55.556 0.00 0.00 41.37 4.09
434 435 1.000233 GACGTGCGTTCGTTGCTCTA 61.000 55.000 0.00 0.00 44.21 2.43
435 436 0.595567 ACGTGCGTTCGTTGCTCTAA 60.596 50.000 0.00 0.00 41.37 2.10
436 437 0.179282 CGTGCGTTCGTTGCTCTAAC 60.179 55.000 0.00 0.00 35.90 2.34
437 438 0.163146 GTGCGTTCGTTGCTCTAACC 59.837 55.000 0.00 0.00 35.84 2.85
438 439 0.947180 TGCGTTCGTTGCTCTAACCC 60.947 55.000 0.00 0.00 35.84 4.11
439 440 1.952266 GCGTTCGTTGCTCTAACCCG 61.952 60.000 0.00 0.00 35.84 5.28
440 441 0.387622 CGTTCGTTGCTCTAACCCGA 60.388 55.000 0.00 0.00 35.84 5.14
441 442 1.347320 GTTCGTTGCTCTAACCCGAG 58.653 55.000 0.00 0.00 35.84 4.63
442 443 0.963962 TTCGTTGCTCTAACCCGAGT 59.036 50.000 0.00 0.00 35.84 4.18
443 444 0.963962 TCGTTGCTCTAACCCGAGTT 59.036 50.000 0.00 0.00 40.15 3.01
444 445 1.342174 TCGTTGCTCTAACCCGAGTTT 59.658 47.619 0.00 0.00 37.42 2.66
445 446 2.140717 CGTTGCTCTAACCCGAGTTTT 58.859 47.619 0.00 0.00 37.42 2.43
446 447 2.157085 CGTTGCTCTAACCCGAGTTTTC 59.843 50.000 0.00 0.00 37.42 2.29
447 448 2.467566 TGCTCTAACCCGAGTTTTCC 57.532 50.000 0.00 0.00 37.42 3.13
448 449 1.002773 TGCTCTAACCCGAGTTTTCCC 59.997 52.381 0.00 0.00 37.42 3.97
449 450 1.002773 GCTCTAACCCGAGTTTTCCCA 59.997 52.381 0.00 0.00 37.42 4.37
450 451 2.355818 GCTCTAACCCGAGTTTTCCCAT 60.356 50.000 0.00 0.00 37.42 4.00
451 452 3.872630 GCTCTAACCCGAGTTTTCCCATT 60.873 47.826 0.00 0.00 37.42 3.16
452 453 3.681593 TCTAACCCGAGTTTTCCCATTG 58.318 45.455 0.00 0.00 37.42 2.82
453 454 2.375014 AACCCGAGTTTTCCCATTGT 57.625 45.000 0.00 0.00 29.61 2.71
454 455 2.375014 ACCCGAGTTTTCCCATTGTT 57.625 45.000 0.00 0.00 0.00 2.83
455 456 3.512219 ACCCGAGTTTTCCCATTGTTA 57.488 42.857 0.00 0.00 0.00 2.41
456 457 4.042271 ACCCGAGTTTTCCCATTGTTAT 57.958 40.909 0.00 0.00 0.00 1.89
457 458 3.761752 ACCCGAGTTTTCCCATTGTTATG 59.238 43.478 0.00 0.00 0.00 1.90
458 459 6.790739 AACCCGAGTTTTCCCATTGTTATGG 61.791 44.000 0.00 0.00 41.42 2.74
466 467 0.455410 CCATTGTTATGGGCACGTGG 59.545 55.000 18.88 0.00 46.43 4.94
467 468 1.458398 CATTGTTATGGGCACGTGGA 58.542 50.000 18.88 0.00 0.00 4.02
468 469 1.132262 CATTGTTATGGGCACGTGGAC 59.868 52.381 18.88 0.44 0.00 4.02
469 470 0.108774 TTGTTATGGGCACGTGGACA 59.891 50.000 18.88 0.00 0.00 4.02
470 471 0.326595 TGTTATGGGCACGTGGACAT 59.673 50.000 18.88 8.75 0.00 3.06
471 472 0.732571 GTTATGGGCACGTGGACATG 59.267 55.000 18.88 0.00 0.00 3.21
472 473 0.393673 TTATGGGCACGTGGACATGG 60.394 55.000 18.88 0.00 0.00 3.66
473 474 1.268283 TATGGGCACGTGGACATGGA 61.268 55.000 18.88 0.00 0.00 3.41
474 475 2.436646 GGGCACGTGGACATGGAG 60.437 66.667 18.88 0.00 0.00 3.86
475 476 3.127533 GGCACGTGGACATGGAGC 61.128 66.667 18.88 0.00 0.00 4.70
476 477 2.046892 GCACGTGGACATGGAGCT 60.047 61.111 18.88 0.00 0.00 4.09
477 478 2.103042 GCACGTGGACATGGAGCTC 61.103 63.158 18.88 4.71 0.00 4.09
478 479 1.448540 CACGTGGACATGGAGCTCC 60.449 63.158 26.78 26.78 0.00 4.70
487 488 3.499406 TGGAGCTCCAAGCCACAT 58.501 55.556 33.41 0.00 43.77 3.21
488 489 1.769665 TGGAGCTCCAAGCCACATT 59.230 52.632 33.41 0.00 43.77 2.71
489 490 0.609957 TGGAGCTCCAAGCCACATTG 60.610 55.000 33.41 0.00 43.77 2.82
629 640 4.414986 AGCCCATCCTGCTCATCT 57.585 55.556 0.00 0.00 32.41 2.90
630 641 1.837789 AGCCCATCCTGCTCATCTG 59.162 57.895 0.00 0.00 32.41 2.90
631 642 0.693430 AGCCCATCCTGCTCATCTGA 60.693 55.000 0.00 0.00 32.41 3.27
632 643 0.400975 GCCCATCCTGCTCATCTGAT 59.599 55.000 0.00 0.00 0.00 2.90
633 644 1.611148 GCCCATCCTGCTCATCTGATC 60.611 57.143 0.00 0.00 0.00 2.92
637 648 1.301558 CCTGCTCATCTGATCCCGC 60.302 63.158 0.00 0.00 0.00 6.13
752 773 1.033574 AACCCGATCCTCATCTCGAC 58.966 55.000 0.00 0.00 37.05 4.20
755 776 1.683917 CCCGATCCTCATCTCGACTTT 59.316 52.381 0.00 0.00 37.05 2.66
771 792 0.095417 CTTTAAGAGCGTCGCAAGCC 59.905 55.000 21.09 5.44 34.64 4.35
811 942 1.533625 TGGACTGGCATAGCAAACAC 58.466 50.000 0.00 0.00 0.00 3.32
819 950 5.760253 ACTGGCATAGCAAACACTATATGTC 59.240 40.000 0.00 0.00 42.31 3.06
1044 1182 2.351244 CCTCACTCGCCTGCTGGTA 61.351 63.158 11.69 0.00 35.27 3.25
1098 1237 4.040461 CACTCAAACCTCCTTCCTCTGTTA 59.960 45.833 0.00 0.00 0.00 2.41
1099 1238 4.284746 ACTCAAACCTCCTTCCTCTGTTAG 59.715 45.833 0.00 0.00 0.00 2.34
1100 1239 4.232091 TCAAACCTCCTTCCTCTGTTAGT 58.768 43.478 0.00 0.00 0.00 2.24
1102 1241 5.842328 TCAAACCTCCTTCCTCTGTTAGTTA 59.158 40.000 0.00 0.00 0.00 2.24
1103 1242 5.741962 AACCTCCTTCCTCTGTTAGTTAC 57.258 43.478 0.00 0.00 0.00 2.50
1104 1243 5.013258 ACCTCCTTCCTCTGTTAGTTACT 57.987 43.478 0.00 0.00 0.00 2.24
1105 1244 6.150034 ACCTCCTTCCTCTGTTAGTTACTA 57.850 41.667 0.00 0.00 0.00 1.82
1106 1245 6.189133 ACCTCCTTCCTCTGTTAGTTACTAG 58.811 44.000 0.00 0.00 0.00 2.57
1384 1523 7.429374 AGAACCAGATTCATTCATGTCTCTA 57.571 36.000 0.00 0.00 40.09 2.43
1407 1584 1.564622 GCGCATGTTACGATCGCAT 59.435 52.632 16.60 7.99 44.50 4.73
1425 1602 3.309138 CGCATCCTCTGATTGTTTCTCTG 59.691 47.826 0.00 0.00 0.00 3.35
1484 1661 1.025812 TTTGTGTTCGCGGTTGGAAT 58.974 45.000 6.13 0.00 0.00 3.01
1485 1662 0.309302 TTGTGTTCGCGGTTGGAATG 59.691 50.000 6.13 0.00 0.00 2.67
1486 1663 0.533085 TGTGTTCGCGGTTGGAATGA 60.533 50.000 6.13 0.00 0.00 2.57
1492 1669 2.364632 TCGCGGTTGGAATGATGAATT 58.635 42.857 6.13 0.00 0.00 2.17
1497 1674 4.800471 GCGGTTGGAATGATGAATTTCTTC 59.200 41.667 5.56 5.56 0.00 2.87
1507 1684 5.043903 TGATGAATTTCTTCTCGATCGGAC 58.956 41.667 16.41 0.00 32.29 4.79
1513 1696 1.103803 CTTCTCGATCGGACCCTGAA 58.896 55.000 16.41 9.23 0.00 3.02
1533 1716 6.476706 CCTGAAAAGATTGTTTGTTTCCTGAC 59.523 38.462 0.00 0.00 0.00 3.51
1700 1883 3.112075 ACAATCACCGTCAGCGCG 61.112 61.111 0.00 0.00 36.67 6.86
2045 2228 1.015085 TGGTGGCCGTAAAATCGACG 61.015 55.000 0.00 0.00 40.02 5.12
2075 2258 1.280142 CGAGAAGACGATCGGCGAT 59.720 57.895 24.26 24.26 44.57 4.58
3434 3626 3.518003 GGCATTAGCAGCCCAGTG 58.482 61.111 0.00 0.00 46.50 3.66
3563 3755 0.457443 TCCTGTAGCTGCGAGTGATG 59.543 55.000 0.00 0.00 0.00 3.07
3613 3805 3.579151 AGGAACTCCACAGGTTACTTCTC 59.421 47.826 0.00 0.00 34.53 2.87
3655 3852 3.364964 CCCGCTGCTTTAGTACAACTTTG 60.365 47.826 0.00 0.00 0.00 2.77
3665 3862 9.425577 GCTTTAGTACAACTTTGAGAGAGTATT 57.574 33.333 0.00 0.00 0.00 1.89
3810 4009 4.750598 GCACTATCTTCTTTTCCGTATCCC 59.249 45.833 0.00 0.00 0.00 3.85
3845 4054 4.167268 CACTTGGCGTCTAGAAGAGTTAC 58.833 47.826 10.08 0.00 0.00 2.50
3846 4055 3.119919 ACTTGGCGTCTAGAAGAGTTACG 60.120 47.826 10.08 1.66 36.67 3.18
3847 4056 2.703416 TGGCGTCTAGAAGAGTTACGA 58.297 47.619 10.08 0.00 35.66 3.43
3851 4060 4.323070 GGCGTCTAGAAGAGTTACGAAAAC 59.677 45.833 10.08 0.00 35.66 2.43
3852 4061 4.913924 GCGTCTAGAAGAGTTACGAAAACA 59.086 41.667 10.08 0.00 35.66 2.83
3854 4063 6.398726 GCGTCTAGAAGAGTTACGAAAACAAG 60.399 42.308 10.08 0.00 35.66 3.16
3855 4064 6.854892 CGTCTAGAAGAGTTACGAAAACAAGA 59.145 38.462 0.00 0.00 35.66 3.02
3857 4066 7.326547 GTCTAGAAGAGTTACGAAAACAAGAGG 59.673 40.741 0.00 0.00 0.00 3.69
3858 4067 5.298347 AGAAGAGTTACGAAAACAAGAGGG 58.702 41.667 7.86 0.00 0.00 4.30
3873 4085 2.858644 AGAGGGGAGAGAGAGAGAGAA 58.141 52.381 0.00 0.00 0.00 2.87
3882 4094 4.210331 AGAGAGAGAGAGAAAGATGAGCC 58.790 47.826 0.00 0.00 0.00 4.70
4135 4665 3.838244 TTTTCTAGGCGCCTATGATGT 57.162 42.857 35.29 12.30 0.00 3.06
4174 4704 3.025599 ATCAGTGGCATGGGGGCT 61.026 61.111 0.00 0.00 43.83 5.19
4260 4790 5.176592 AGAAATTTCTTCGCTAGGGTACAC 58.823 41.667 15.11 0.00 32.55 2.90
4437 4967 4.621068 TTTTGAATGCCTATCGCTTCTG 57.379 40.909 0.00 0.00 38.78 3.02
4578 5403 9.338622 ACAAAATCACTATATAAGCCCACTAAC 57.661 33.333 0.00 0.00 0.00 2.34
4579 5404 9.337396 CAAAATCACTATATAAGCCCACTAACA 57.663 33.333 0.00 0.00 0.00 2.41
4580 5405 9.561069 AAAATCACTATATAAGCCCACTAACAG 57.439 33.333 0.00 0.00 0.00 3.16
4581 5406 7.857404 ATCACTATATAAGCCCACTAACAGT 57.143 36.000 0.00 0.00 0.00 3.55
4582 5407 8.951614 ATCACTATATAAGCCCACTAACAGTA 57.048 34.615 0.00 0.00 0.00 2.74
4583 5408 8.771521 TCACTATATAAGCCCACTAACAGTAA 57.228 34.615 0.00 0.00 0.00 2.24
4584 5409 9.375974 TCACTATATAAGCCCACTAACAGTAAT 57.624 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.876156 CCAGGAAAGCAGACAGTTGTC 59.124 52.381 4.09 4.09 45.08 3.18
26 27 1.477558 CCCAGGAAAGCAGACAGTTGT 60.478 52.381 0.00 0.00 0.00 3.32
27 28 1.242076 CCCAGGAAAGCAGACAGTTG 58.758 55.000 0.00 0.00 0.00 3.16
28 29 0.538287 GCCCAGGAAAGCAGACAGTT 60.538 55.000 0.00 0.00 0.00 3.16
29 30 1.073897 GCCCAGGAAAGCAGACAGT 59.926 57.895 0.00 0.00 0.00 3.55
30 31 2.037136 CGCCCAGGAAAGCAGACAG 61.037 63.158 0.00 0.00 0.00 3.51
31 32 1.841302 ATCGCCCAGGAAAGCAGACA 61.841 55.000 0.00 0.00 0.00 3.41
32 33 1.078143 ATCGCCCAGGAAAGCAGAC 60.078 57.895 0.00 0.00 0.00 3.51
33 34 1.078214 CATCGCCCAGGAAAGCAGA 60.078 57.895 0.00 0.00 0.00 4.26
34 35 1.372087 GACATCGCCCAGGAAAGCAG 61.372 60.000 0.00 0.00 0.00 4.24
35 36 1.377202 GACATCGCCCAGGAAAGCA 60.377 57.895 0.00 0.00 0.00 3.91
36 37 2.464459 CGACATCGCCCAGGAAAGC 61.464 63.158 0.00 0.00 0.00 3.51
37 38 0.807667 CTCGACATCGCCCAGGAAAG 60.808 60.000 0.00 0.00 39.60 2.62
38 39 1.218047 CTCGACATCGCCCAGGAAA 59.782 57.895 0.00 0.00 39.60 3.13
39 40 1.680989 TCTCGACATCGCCCAGGAA 60.681 57.895 0.00 0.00 39.60 3.36
40 41 2.044352 TCTCGACATCGCCCAGGA 60.044 61.111 0.00 0.00 39.60 3.86
41 42 2.105128 GTCTCGACATCGCCCAGG 59.895 66.667 0.00 0.00 39.60 4.45
42 43 2.278206 CGTCTCGACATCGCCCAG 60.278 66.667 0.00 0.00 39.60 4.45
43 44 4.492160 GCGTCTCGACATCGCCCA 62.492 66.667 11.39 0.00 43.41 5.36
47 48 0.842613 CATTCTGCGTCTCGACATCG 59.157 55.000 0.00 0.00 41.45 3.84
48 49 2.194800 TCATTCTGCGTCTCGACATC 57.805 50.000 0.00 0.00 0.00 3.06
49 50 2.360483 AGATCATTCTGCGTCTCGACAT 59.640 45.455 0.00 0.00 0.00 3.06
50 51 1.745653 AGATCATTCTGCGTCTCGACA 59.254 47.619 0.00 0.00 0.00 4.35
51 52 2.380660 GAGATCATTCTGCGTCTCGAC 58.619 52.381 0.00 0.00 30.30 4.20
52 53 2.765108 GAGATCATTCTGCGTCTCGA 57.235 50.000 0.00 0.00 30.30 4.04
54 55 2.483583 ACGAGATCATTCTGCGTCTC 57.516 50.000 0.00 0.00 33.46 3.36
55 56 2.534298 CAACGAGATCATTCTGCGTCT 58.466 47.619 0.00 0.00 35.87 4.18
56 57 1.590238 CCAACGAGATCATTCTGCGTC 59.410 52.381 0.00 0.00 35.87 5.19
57 58 1.645034 CCAACGAGATCATTCTGCGT 58.355 50.000 0.00 0.00 37.35 5.24
58 59 0.302890 GCCAACGAGATCATTCTGCG 59.697 55.000 0.00 0.00 30.30 5.18
59 60 0.659957 GGCCAACGAGATCATTCTGC 59.340 55.000 0.00 0.00 30.30 4.26
60 61 2.028420 TGGCCAACGAGATCATTCTG 57.972 50.000 0.61 0.00 30.30 3.02
61 62 2.092753 ACATGGCCAACGAGATCATTCT 60.093 45.455 10.96 0.00 33.88 2.40
62 63 2.032550 CACATGGCCAACGAGATCATTC 59.967 50.000 10.96 0.00 0.00 2.67
63 64 2.019249 CACATGGCCAACGAGATCATT 58.981 47.619 10.96 0.00 0.00 2.57
64 65 1.671979 CACATGGCCAACGAGATCAT 58.328 50.000 10.96 0.00 0.00 2.45
65 66 1.026182 GCACATGGCCAACGAGATCA 61.026 55.000 10.96 0.00 36.11 2.92
66 67 1.026182 TGCACATGGCCAACGAGATC 61.026 55.000 10.96 0.00 43.89 2.75
67 68 0.394762 ATGCACATGGCCAACGAGAT 60.395 50.000 10.96 0.00 43.89 2.75
68 69 1.002257 ATGCACATGGCCAACGAGA 60.002 52.632 10.96 0.00 43.89 4.04
69 70 1.028330 AGATGCACATGGCCAACGAG 61.028 55.000 10.96 3.76 43.89 4.18
70 71 1.002257 AGATGCACATGGCCAACGA 60.002 52.632 10.96 0.00 43.89 3.85
71 72 1.138036 CAGATGCACATGGCCAACG 59.862 57.895 10.96 6.78 43.89 4.10
72 73 0.966875 TCCAGATGCACATGGCCAAC 60.967 55.000 10.96 0.00 43.89 3.77
73 74 0.681887 CTCCAGATGCACATGGCCAA 60.682 55.000 10.96 0.00 43.89 4.52
74 75 1.077285 CTCCAGATGCACATGGCCA 60.077 57.895 8.56 8.56 43.89 5.36
75 76 2.487532 GCTCCAGATGCACATGGCC 61.488 63.158 13.14 0.00 43.89 5.36
76 77 2.487532 GGCTCCAGATGCACATGGC 61.488 63.158 13.14 0.00 45.13 4.40
77 78 0.395311 AAGGCTCCAGATGCACATGG 60.395 55.000 11.97 11.97 37.97 3.66
78 79 0.738975 CAAGGCTCCAGATGCACATG 59.261 55.000 0.00 0.00 0.00 3.21
79 80 0.330604 ACAAGGCTCCAGATGCACAT 59.669 50.000 0.00 0.00 0.00 3.21
80 81 0.321919 GACAAGGCTCCAGATGCACA 60.322 55.000 0.00 0.00 0.00 4.57
81 82 0.035630 AGACAAGGCTCCAGATGCAC 60.036 55.000 0.00 0.00 0.00 4.57
82 83 0.251354 GAGACAAGGCTCCAGATGCA 59.749 55.000 0.00 0.00 0.00 3.96
83 84 0.809241 CGAGACAAGGCTCCAGATGC 60.809 60.000 0.00 0.00 0.00 3.91
84 85 0.809241 GCGAGACAAGGCTCCAGATG 60.809 60.000 0.00 0.00 0.00 2.90
85 86 0.975040 AGCGAGACAAGGCTCCAGAT 60.975 55.000 0.00 0.00 33.32 2.90
86 87 1.607756 AGCGAGACAAGGCTCCAGA 60.608 57.895 0.00 0.00 33.32 3.86
87 88 1.447489 CAGCGAGACAAGGCTCCAG 60.447 63.158 0.00 0.00 37.41 3.86
88 89 1.471829 TTCAGCGAGACAAGGCTCCA 61.472 55.000 0.00 0.00 37.41 3.86
89 90 0.739112 CTTCAGCGAGACAAGGCTCC 60.739 60.000 0.00 0.00 37.41 4.70
90 91 0.244994 TCTTCAGCGAGACAAGGCTC 59.755 55.000 0.00 0.00 37.41 4.70
91 92 0.681733 TTCTTCAGCGAGACAAGGCT 59.318 50.000 0.00 0.00 40.90 4.58
92 93 1.195674 GTTTCTTCAGCGAGACAAGGC 59.804 52.381 0.00 0.00 0.00 4.35
93 94 1.801178 GGTTTCTTCAGCGAGACAAGG 59.199 52.381 0.00 0.00 0.00 3.61
94 95 2.760374 AGGTTTCTTCAGCGAGACAAG 58.240 47.619 0.00 0.00 0.00 3.16
95 96 2.910688 AGGTTTCTTCAGCGAGACAA 57.089 45.000 0.00 0.00 0.00 3.18
96 97 2.910688 AAGGTTTCTTCAGCGAGACA 57.089 45.000 0.00 0.00 0.00 3.41
97 98 3.123790 GCTAAAGGTTTCTTCAGCGAGAC 59.876 47.826 0.00 0.00 34.85 3.36
98 99 3.326747 GCTAAAGGTTTCTTCAGCGAGA 58.673 45.455 0.00 0.00 34.85 4.04
99 100 2.416893 GGCTAAAGGTTTCTTCAGCGAG 59.583 50.000 0.00 0.00 43.56 5.03
100 101 2.423577 GGCTAAAGGTTTCTTCAGCGA 58.576 47.619 0.00 0.00 43.56 4.93
101 102 1.468914 GGGCTAAAGGTTTCTTCAGCG 59.531 52.381 0.00 0.00 43.56 5.18
102 103 2.514803 TGGGCTAAAGGTTTCTTCAGC 58.485 47.619 0.00 0.00 42.25 4.26
103 104 5.478332 AGATTTGGGCTAAAGGTTTCTTCAG 59.522 40.000 1.72 0.00 31.82 3.02
104 105 5.393866 AGATTTGGGCTAAAGGTTTCTTCA 58.606 37.500 1.72 0.00 31.82 3.02
105 106 5.984695 AGATTTGGGCTAAAGGTTTCTTC 57.015 39.130 1.72 0.00 31.82 2.87
106 107 5.838521 TGAAGATTTGGGCTAAAGGTTTCTT 59.161 36.000 8.94 8.94 30.49 2.52
107 108 5.393866 TGAAGATTTGGGCTAAAGGTTTCT 58.606 37.500 1.72 0.00 0.00 2.52
108 109 5.336770 CCTGAAGATTTGGGCTAAAGGTTTC 60.337 44.000 1.72 6.31 0.00 2.78
109 110 4.528206 CCTGAAGATTTGGGCTAAAGGTTT 59.472 41.667 1.72 0.00 0.00 3.27
110 111 4.089361 CCTGAAGATTTGGGCTAAAGGTT 58.911 43.478 1.72 0.00 0.00 3.50
111 112 3.076032 ACCTGAAGATTTGGGCTAAAGGT 59.924 43.478 1.72 0.00 30.58 3.50
112 113 3.701664 ACCTGAAGATTTGGGCTAAAGG 58.298 45.455 1.72 0.00 0.00 3.11
113 114 5.012893 AGAACCTGAAGATTTGGGCTAAAG 58.987 41.667 1.72 0.00 0.00 1.85
114 115 4.998051 AGAACCTGAAGATTTGGGCTAAA 58.002 39.130 0.00 0.00 0.00 1.85
115 116 4.657814 AGAACCTGAAGATTTGGGCTAA 57.342 40.909 0.00 0.00 0.00 3.09
116 117 4.657814 AAGAACCTGAAGATTTGGGCTA 57.342 40.909 0.00 0.00 0.00 3.93
117 118 3.532641 AAGAACCTGAAGATTTGGGCT 57.467 42.857 0.00 0.00 0.00 5.19
118 119 3.129462 GCTAAGAACCTGAAGATTTGGGC 59.871 47.826 0.00 0.00 0.00 5.36
119 120 3.696548 GGCTAAGAACCTGAAGATTTGGG 59.303 47.826 0.00 0.00 0.00 4.12
120 121 3.375299 CGGCTAAGAACCTGAAGATTTGG 59.625 47.826 0.00 0.00 0.00 3.28
121 122 3.181506 GCGGCTAAGAACCTGAAGATTTG 60.182 47.826 0.00 0.00 0.00 2.32
122 123 3.010420 GCGGCTAAGAACCTGAAGATTT 58.990 45.455 0.00 0.00 0.00 2.17
123 124 2.237392 AGCGGCTAAGAACCTGAAGATT 59.763 45.455 0.00 0.00 0.00 2.40
124 125 1.834263 AGCGGCTAAGAACCTGAAGAT 59.166 47.619 0.00 0.00 0.00 2.40
125 126 1.204941 GAGCGGCTAAGAACCTGAAGA 59.795 52.381 0.60 0.00 0.00 2.87
126 127 1.205893 AGAGCGGCTAAGAACCTGAAG 59.794 52.381 0.60 0.00 0.00 3.02
127 128 1.267121 AGAGCGGCTAAGAACCTGAA 58.733 50.000 0.60 0.00 0.00 3.02
128 129 2.025155 CTAGAGCGGCTAAGAACCTGA 58.975 52.381 0.60 0.00 0.00 3.86
129 130 1.537135 GCTAGAGCGGCTAAGAACCTG 60.537 57.143 14.22 0.00 0.00 4.00
130 131 0.747852 GCTAGAGCGGCTAAGAACCT 59.252 55.000 14.22 4.27 0.00 3.50
131 132 0.460311 TGCTAGAGCGGCTAAGAACC 59.540 55.000 14.22 0.00 45.83 3.62
132 133 2.197577 CTTGCTAGAGCGGCTAAGAAC 58.802 52.381 14.22 0.00 45.83 3.01
133 134 1.825474 ACTTGCTAGAGCGGCTAAGAA 59.175 47.619 14.55 2.84 45.83 2.52
134 135 1.475403 ACTTGCTAGAGCGGCTAAGA 58.525 50.000 14.55 0.00 45.83 2.10
135 136 2.301577 AACTTGCTAGAGCGGCTAAG 57.698 50.000 0.60 5.12 45.83 2.18
136 137 2.028476 TGAAACTTGCTAGAGCGGCTAA 60.028 45.455 0.60 0.00 45.83 3.09
137 138 1.548719 TGAAACTTGCTAGAGCGGCTA 59.451 47.619 0.60 0.00 45.83 3.93
138 139 0.321671 TGAAACTTGCTAGAGCGGCT 59.678 50.000 0.00 0.00 45.83 5.52
139 140 0.444260 GTGAAACTTGCTAGAGCGGC 59.556 55.000 1.04 0.00 45.83 6.53
140 141 0.716108 CGTGAAACTTGCTAGAGCGG 59.284 55.000 1.04 0.00 38.36 5.52
141 142 1.419374 ACGTGAAACTTGCTAGAGCG 58.581 50.000 1.04 1.79 38.36 5.03
142 143 2.800544 TCAACGTGAAACTTGCTAGAGC 59.199 45.455 1.04 0.00 36.56 4.09
143 144 4.149046 GTCTCAACGTGAAACTTGCTAGAG 59.851 45.833 1.04 0.00 31.75 2.43
144 145 4.049186 GTCTCAACGTGAAACTTGCTAGA 58.951 43.478 1.04 0.00 31.75 2.43
145 146 3.121328 CGTCTCAACGTGAAACTTGCTAG 60.121 47.826 0.00 0.00 43.94 3.42
146 147 2.792674 CGTCTCAACGTGAAACTTGCTA 59.207 45.455 0.00 0.00 43.94 3.49
147 148 1.593006 CGTCTCAACGTGAAACTTGCT 59.407 47.619 0.00 0.00 43.94 3.91
148 149 2.005188 CGTCTCAACGTGAAACTTGC 57.995 50.000 0.00 0.00 43.94 4.01
159 160 3.567473 GCCTTCCAGCGTCTCAAC 58.433 61.111 0.00 0.00 0.00 3.18
183 184 3.769875 GAATCGTCCGGTCGCCTCC 62.770 68.421 16.54 1.98 0.00 4.30
184 185 2.278661 GAATCGTCCGGTCGCCTC 60.279 66.667 16.54 10.80 0.00 4.70
185 186 3.834799 GGAATCGTCCGGTCGCCT 61.835 66.667 16.54 5.36 33.05 5.52
193 194 1.815421 AGCATGCGTGGAATCGTCC 60.815 57.895 13.01 0.00 45.21 4.79
194 195 1.349627 CAGCATGCGTGGAATCGTC 59.650 57.895 13.01 0.00 0.00 4.20
195 196 2.108514 CCAGCATGCGTGGAATCGT 61.109 57.895 23.86 0.00 37.23 3.73
196 197 1.815003 TCCAGCATGCGTGGAATCG 60.815 57.895 26.65 9.14 41.32 3.34
197 198 1.718757 GGTCCAGCATGCGTGGAATC 61.719 60.000 28.95 22.33 45.85 2.52
198 199 1.750399 GGTCCAGCATGCGTGGAAT 60.750 57.895 28.95 4.90 45.85 3.01
199 200 2.359850 GGTCCAGCATGCGTGGAA 60.360 61.111 28.95 16.75 45.85 3.53
200 201 4.758251 CGGTCCAGCATGCGTGGA 62.758 66.667 25.68 25.68 42.06 4.02
202 203 3.792047 CACGGTCCAGCATGCGTG 61.792 66.667 13.01 9.37 41.94 5.34
203 204 3.315142 ATCACGGTCCAGCATGCGT 62.315 57.895 13.01 0.00 32.71 5.24
204 205 2.512286 ATCACGGTCCAGCATGCG 60.512 61.111 13.01 7.31 31.97 4.73
205 206 1.746615 ACATCACGGTCCAGCATGC 60.747 57.895 10.51 10.51 31.97 4.06
206 207 1.371337 CCACATCACGGTCCAGCATG 61.371 60.000 0.00 0.00 0.00 4.06
207 208 1.078214 CCACATCACGGTCCAGCAT 60.078 57.895 0.00 0.00 0.00 3.79
208 209 1.763546 TTCCACATCACGGTCCAGCA 61.764 55.000 0.00 0.00 0.00 4.41
209 210 0.392998 ATTCCACATCACGGTCCAGC 60.393 55.000 0.00 0.00 0.00 4.85
210 211 1.656652 GATTCCACATCACGGTCCAG 58.343 55.000 0.00 0.00 0.00 3.86
211 212 0.108377 CGATTCCACATCACGGTCCA 60.108 55.000 0.00 0.00 0.00 4.02
212 213 0.174845 TCGATTCCACATCACGGTCC 59.825 55.000 0.00 0.00 0.00 4.46
213 214 1.560923 CTCGATTCCACATCACGGTC 58.439 55.000 0.00 0.00 0.00 4.79
214 215 0.175760 CCTCGATTCCACATCACGGT 59.824 55.000 0.00 0.00 0.00 4.83
215 216 0.530650 CCCTCGATTCCACATCACGG 60.531 60.000 0.00 0.00 0.00 4.94
216 217 0.459899 TCCCTCGATTCCACATCACG 59.540 55.000 0.00 0.00 0.00 4.35
217 218 2.691409 TTCCCTCGATTCCACATCAC 57.309 50.000 0.00 0.00 0.00 3.06
218 219 2.092968 CCTTTCCCTCGATTCCACATCA 60.093 50.000 0.00 0.00 0.00 3.07
219 220 2.565841 CCTTTCCCTCGATTCCACATC 58.434 52.381 0.00 0.00 0.00 3.06
220 221 1.408822 GCCTTTCCCTCGATTCCACAT 60.409 52.381 0.00 0.00 0.00 3.21
221 222 0.035439 GCCTTTCCCTCGATTCCACA 60.035 55.000 0.00 0.00 0.00 4.17
222 223 1.090052 CGCCTTTCCCTCGATTCCAC 61.090 60.000 0.00 0.00 0.00 4.02
223 224 1.220749 CGCCTTTCCCTCGATTCCA 59.779 57.895 0.00 0.00 0.00 3.53
224 225 1.523938 CCGCCTTTCCCTCGATTCC 60.524 63.158 0.00 0.00 0.00 3.01
225 226 2.180862 GCCGCCTTTCCCTCGATTC 61.181 63.158 0.00 0.00 0.00 2.52
226 227 1.335132 TAGCCGCCTTTCCCTCGATT 61.335 55.000 0.00 0.00 0.00 3.34
227 228 1.749334 CTAGCCGCCTTTCCCTCGAT 61.749 60.000 0.00 0.00 0.00 3.59
228 229 2.363276 TAGCCGCCTTTCCCTCGA 60.363 61.111 0.00 0.00 0.00 4.04
229 230 1.956629 TTCTAGCCGCCTTTCCCTCG 61.957 60.000 0.00 0.00 0.00 4.63
230 231 0.179070 CTTCTAGCCGCCTTTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
231 232 1.627297 CCTTCTAGCCGCCTTTCCCT 61.627 60.000 0.00 0.00 0.00 4.20
232 233 1.153147 CCTTCTAGCCGCCTTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
233 234 0.470341 ATCCTTCTAGCCGCCTTTCC 59.530 55.000 0.00 0.00 0.00 3.13
234 235 2.214347 GAATCCTTCTAGCCGCCTTTC 58.786 52.381 0.00 0.00 0.00 2.62
235 236 1.473434 CGAATCCTTCTAGCCGCCTTT 60.473 52.381 0.00 0.00 0.00 3.11
236 237 0.105039 CGAATCCTTCTAGCCGCCTT 59.895 55.000 0.00 0.00 0.00 4.35
237 238 0.755698 TCGAATCCTTCTAGCCGCCT 60.756 55.000 0.00 0.00 0.00 5.52
238 239 0.104304 TTCGAATCCTTCTAGCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
239 240 1.593469 GTTTCGAATCCTTCTAGCCGC 59.407 52.381 0.00 0.00 0.00 6.53
240 241 1.852895 CGTTTCGAATCCTTCTAGCCG 59.147 52.381 0.00 0.00 0.00 5.52
241 242 3.160777 TCGTTTCGAATCCTTCTAGCC 57.839 47.619 0.00 0.00 31.06 3.93
242 243 5.314409 GTTTTCGTTTCGAATCCTTCTAGC 58.686 41.667 0.00 0.00 45.28 3.42
243 244 5.444218 CCGTTTTCGTTTCGAATCCTTCTAG 60.444 44.000 0.00 0.00 45.28 2.43
244 245 4.386652 CCGTTTTCGTTTCGAATCCTTCTA 59.613 41.667 0.00 0.00 45.28 2.10
245 246 3.185797 CCGTTTTCGTTTCGAATCCTTCT 59.814 43.478 0.00 0.00 45.28 2.85
246 247 3.476181 CCGTTTTCGTTTCGAATCCTTC 58.524 45.455 0.00 0.00 45.28 3.46
247 248 2.224784 CCCGTTTTCGTTTCGAATCCTT 59.775 45.455 0.00 0.00 45.28 3.36
248 249 1.802365 CCCGTTTTCGTTTCGAATCCT 59.198 47.619 0.00 0.00 45.28 3.24
249 250 1.726892 GCCCGTTTTCGTTTCGAATCC 60.727 52.381 0.00 0.00 45.28 3.01
250 251 1.598894 GCCCGTTTTCGTTTCGAATC 58.401 50.000 0.00 0.00 45.28 2.52
251 252 0.239082 GGCCCGTTTTCGTTTCGAAT 59.761 50.000 0.00 0.00 45.28 3.34
252 253 1.648174 GGCCCGTTTTCGTTTCGAA 59.352 52.632 0.00 0.00 44.28 3.71
253 254 2.596795 CGGCCCGTTTTCGTTTCGA 61.597 57.895 0.00 0.00 42.35 3.71
254 255 2.127534 CGGCCCGTTTTCGTTTCG 60.128 61.111 0.00 0.00 42.35 3.46
255 256 2.427905 GCGGCCCGTTTTCGTTTC 60.428 61.111 4.45 0.00 42.35 2.78
256 257 4.316571 CGCGGCCCGTTTTCGTTT 62.317 61.111 4.45 0.00 42.35 3.60
276 277 3.512516 GAAGCATCTGCACCCCGC 61.513 66.667 4.79 0.00 45.16 6.13
277 278 2.825836 GGAAGCATCTGCACCCCG 60.826 66.667 4.79 0.00 45.16 5.73
278 279 2.825836 CGGAAGCATCTGCACCCC 60.826 66.667 4.79 1.72 45.16 4.95
279 280 2.109126 GTCGGAAGCATCTGCACCC 61.109 63.158 4.79 4.11 45.16 4.61
280 281 1.364626 CTGTCGGAAGCATCTGCACC 61.365 60.000 4.79 6.64 45.16 5.01
281 282 1.975363 GCTGTCGGAAGCATCTGCAC 61.975 60.000 4.79 0.00 45.16 4.57
282 283 1.742880 GCTGTCGGAAGCATCTGCA 60.743 57.895 4.79 0.00 45.16 4.41
283 284 3.096791 GCTGTCGGAAGCATCTGC 58.903 61.111 5.51 0.00 43.01 4.26
289 290 2.684843 CCTTGCTGCTGTCGGAAGC 61.685 63.158 4.45 4.45 46.72 3.86
290 291 2.037136 CCCTTGCTGCTGTCGGAAG 61.037 63.158 0.00 0.00 0.00 3.46
291 292 2.032528 CCCTTGCTGCTGTCGGAA 59.967 61.111 0.00 0.00 0.00 4.30
292 293 4.020617 CCCCTTGCTGCTGTCGGA 62.021 66.667 0.00 0.00 0.00 4.55
295 296 1.980772 ATTGCCCCTTGCTGCTGTC 60.981 57.895 0.00 0.00 42.00 3.51
296 297 2.118951 ATTGCCCCTTGCTGCTGT 59.881 55.556 0.00 0.00 42.00 4.40
297 298 2.577059 CATTGCCCCTTGCTGCTG 59.423 61.111 0.00 0.00 42.00 4.41
298 299 2.682494 CCATTGCCCCTTGCTGCT 60.682 61.111 0.00 0.00 42.00 4.24
299 300 2.999063 ACCATTGCCCCTTGCTGC 60.999 61.111 0.00 0.00 42.00 5.25
300 301 2.703798 CGACCATTGCCCCTTGCTG 61.704 63.158 0.00 0.00 42.00 4.41
301 302 2.361610 CGACCATTGCCCCTTGCT 60.362 61.111 0.00 0.00 42.00 3.91
302 303 3.451894 CCGACCATTGCCCCTTGC 61.452 66.667 0.00 0.00 41.77 4.01
303 304 1.750399 CTCCGACCATTGCCCCTTG 60.750 63.158 0.00 0.00 0.00 3.61
304 305 2.677228 CTCCGACCATTGCCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
305 306 4.115199 GCTCCGACCATTGCCCCT 62.115 66.667 0.00 0.00 0.00 4.79
306 307 4.424711 TGCTCCGACCATTGCCCC 62.425 66.667 0.00 0.00 0.00 5.80
307 308 3.134127 GTGCTCCGACCATTGCCC 61.134 66.667 0.00 0.00 0.00 5.36
308 309 3.499737 CGTGCTCCGACCATTGCC 61.500 66.667 0.00 0.00 39.56 4.52
309 310 2.434185 TCGTGCTCCGACCATTGC 60.434 61.111 0.00 0.00 41.60 3.56
317 318 2.528743 GCATCCACATCGTGCTCCG 61.529 63.158 0.00 0.00 36.02 4.63
318 319 1.434622 CTGCATCCACATCGTGCTCC 61.435 60.000 0.00 0.00 39.52 4.70
319 320 2.012237 CTGCATCCACATCGTGCTC 58.988 57.895 0.00 0.00 39.52 4.26
320 321 2.110967 GCTGCATCCACATCGTGCT 61.111 57.895 0.00 0.00 39.52 4.40
321 322 1.721664 ATGCTGCATCCACATCGTGC 61.722 55.000 9.81 0.00 39.26 5.34
322 323 0.028902 CATGCTGCATCCACATCGTG 59.971 55.000 13.10 0.00 0.00 4.35
323 324 1.099295 CCATGCTGCATCCACATCGT 61.099 55.000 13.10 0.00 0.00 3.73
324 325 0.816421 TCCATGCTGCATCCACATCG 60.816 55.000 13.10 0.00 0.00 3.84
325 326 0.952280 CTCCATGCTGCATCCACATC 59.048 55.000 13.10 0.00 0.00 3.06
326 327 0.549469 TCTCCATGCTGCATCCACAT 59.451 50.000 13.10 0.00 0.00 3.21
327 328 0.328926 TTCTCCATGCTGCATCCACA 59.671 50.000 13.10 0.00 0.00 4.17
328 329 1.022735 CTTCTCCATGCTGCATCCAC 58.977 55.000 13.10 0.00 0.00 4.02
329 330 0.106868 CCTTCTCCATGCTGCATCCA 60.107 55.000 13.10 0.83 0.00 3.41
330 331 0.106819 ACCTTCTCCATGCTGCATCC 60.107 55.000 13.10 0.00 0.00 3.51
331 332 2.492012 CTACCTTCTCCATGCTGCATC 58.508 52.381 13.10 0.00 0.00 3.91
332 333 1.142465 CCTACCTTCTCCATGCTGCAT 59.858 52.381 9.81 9.81 0.00 3.96
333 334 0.543277 CCTACCTTCTCCATGCTGCA 59.457 55.000 4.13 4.13 0.00 4.41
334 335 0.833287 TCCTACCTTCTCCATGCTGC 59.167 55.000 0.00 0.00 0.00 5.25
335 336 1.202463 CGTCCTACCTTCTCCATGCTG 60.202 57.143 0.00 0.00 0.00 4.41
336 337 1.115467 CGTCCTACCTTCTCCATGCT 58.885 55.000 0.00 0.00 0.00 3.79
337 338 0.105039 CCGTCCTACCTTCTCCATGC 59.895 60.000 0.00 0.00 0.00 4.06
338 339 0.753262 CCCGTCCTACCTTCTCCATG 59.247 60.000 0.00 0.00 0.00 3.66
339 340 0.635009 TCCCGTCCTACCTTCTCCAT 59.365 55.000 0.00 0.00 0.00 3.41
340 341 0.410663 TTCCCGTCCTACCTTCTCCA 59.589 55.000 0.00 0.00 0.00 3.86
341 342 0.822811 GTTCCCGTCCTACCTTCTCC 59.177 60.000 0.00 0.00 0.00 3.71
342 343 1.553706 TGTTCCCGTCCTACCTTCTC 58.446 55.000 0.00 0.00 0.00 2.87
343 344 1.831736 CATGTTCCCGTCCTACCTTCT 59.168 52.381 0.00 0.00 0.00 2.85
344 345 1.134491 CCATGTTCCCGTCCTACCTTC 60.134 57.143 0.00 0.00 0.00 3.46
345 346 0.909623 CCATGTTCCCGTCCTACCTT 59.090 55.000 0.00 0.00 0.00 3.50
346 347 0.042131 TCCATGTTCCCGTCCTACCT 59.958 55.000 0.00 0.00 0.00 3.08
347 348 0.464452 CTCCATGTTCCCGTCCTACC 59.536 60.000 0.00 0.00 0.00 3.18
348 349 0.179081 GCTCCATGTTCCCGTCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
349 350 0.325296 AGCTCCATGTTCCCGTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
350 351 1.613630 AGCTCCATGTTCCCGTCCT 60.614 57.895 0.00 0.00 0.00 3.85
351 352 1.153349 GAGCTCCATGTTCCCGTCC 60.153 63.158 0.87 0.00 0.00 4.79
352 353 1.153349 GGAGCTCCATGTTCCCGTC 60.153 63.158 28.43 0.00 39.78 4.79
353 354 1.488705 TTGGAGCTCCATGTTCCCGT 61.489 55.000 35.42 0.00 46.97 5.28
354 355 0.745845 CTTGGAGCTCCATGTTCCCG 60.746 60.000 35.42 13.94 46.97 5.14
355 356 1.034292 GCTTGGAGCTCCATGTTCCC 61.034 60.000 36.00 22.58 46.97 3.97
356 357 1.034292 GGCTTGGAGCTCCATGTTCC 61.034 60.000 36.00 28.76 46.97 3.62
357 358 0.322816 TGGCTTGGAGCTCCATGTTC 60.323 55.000 36.00 29.54 46.97 3.18
358 359 0.610232 GTGGCTTGGAGCTCCATGTT 60.610 55.000 36.00 0.00 46.97 2.71
359 360 1.001641 GTGGCTTGGAGCTCCATGT 60.002 57.895 36.00 0.00 46.97 3.21
360 361 0.395311 ATGTGGCTTGGAGCTCCATG 60.395 55.000 35.42 34.52 46.97 3.66
361 362 0.333993 AATGTGGCTTGGAGCTCCAT 59.666 50.000 35.42 16.65 46.97 3.41
362 363 0.609957 CAATGTGGCTTGGAGCTCCA 60.610 55.000 32.00 32.00 45.94 3.86
363 364 1.941999 GCAATGTGGCTTGGAGCTCC 61.942 60.000 26.78 26.78 41.99 4.70
364 365 1.246056 TGCAATGTGGCTTGGAGCTC 61.246 55.000 4.71 4.71 41.99 4.09
365 366 1.228644 TGCAATGTGGCTTGGAGCT 60.229 52.632 0.00 0.00 41.99 4.09
366 367 1.214589 CTGCAATGTGGCTTGGAGC 59.785 57.895 0.00 0.00 37.69 4.70
367 368 1.201647 CTTCTGCAATGTGGCTTGGAG 59.798 52.381 0.85 0.85 43.58 3.86
368 369 1.250328 CTTCTGCAATGTGGCTTGGA 58.750 50.000 0.00 0.00 34.04 3.53
369 370 0.963962 ACTTCTGCAATGTGGCTTGG 59.036 50.000 0.00 0.00 34.04 3.61
370 371 2.816087 AGTACTTCTGCAATGTGGCTTG 59.184 45.455 0.00 0.00 34.04 4.01
371 372 3.146104 AGTACTTCTGCAATGTGGCTT 57.854 42.857 0.00 0.00 34.04 4.35
372 373 2.816087 CAAGTACTTCTGCAATGTGGCT 59.184 45.455 4.77 0.00 34.04 4.75
373 374 2.554032 ACAAGTACTTCTGCAATGTGGC 59.446 45.455 4.77 0.00 0.00 5.01
374 375 4.067896 AGACAAGTACTTCTGCAATGTGG 58.932 43.478 4.77 0.00 0.00 4.17
375 376 6.674037 GCATAGACAAGTACTTCTGCAATGTG 60.674 42.308 4.77 0.00 0.00 3.21
376 377 5.352569 GCATAGACAAGTACTTCTGCAATGT 59.647 40.000 4.77 0.00 0.00 2.71
377 378 5.583854 AGCATAGACAAGTACTTCTGCAATG 59.416 40.000 4.77 7.48 31.75 2.82
378 379 5.738909 AGCATAGACAAGTACTTCTGCAAT 58.261 37.500 4.77 0.00 31.75 3.56
379 380 5.152623 AGCATAGACAAGTACTTCTGCAA 57.847 39.130 4.77 0.00 31.75 4.08
380 381 4.808414 AGCATAGACAAGTACTTCTGCA 57.192 40.909 4.77 0.00 31.75 4.41
381 382 6.334202 AGTTAGCATAGACAAGTACTTCTGC 58.666 40.000 4.77 9.77 0.00 4.26
382 383 8.132362 CCTAGTTAGCATAGACAAGTACTTCTG 58.868 40.741 4.77 0.00 0.00 3.02
383 384 7.285858 CCCTAGTTAGCATAGACAAGTACTTCT 59.714 40.741 4.77 3.58 0.00 2.85
384 385 7.068470 ACCCTAGTTAGCATAGACAAGTACTTC 59.932 40.741 4.77 0.00 0.00 3.01
385 386 6.896307 ACCCTAGTTAGCATAGACAAGTACTT 59.104 38.462 1.12 1.12 0.00 2.24
386 387 6.433441 ACCCTAGTTAGCATAGACAAGTACT 58.567 40.000 0.00 0.00 0.00 2.73
387 388 6.712179 ACCCTAGTTAGCATAGACAAGTAC 57.288 41.667 0.00 0.00 0.00 2.73
388 389 6.097839 CCAACCCTAGTTAGCATAGACAAGTA 59.902 42.308 0.00 0.00 33.27 2.24
389 390 5.104900 CCAACCCTAGTTAGCATAGACAAGT 60.105 44.000 0.00 0.00 33.27 3.16
390 391 5.128827 TCCAACCCTAGTTAGCATAGACAAG 59.871 44.000 0.00 0.00 33.27 3.16
391 392 5.027460 TCCAACCCTAGTTAGCATAGACAA 58.973 41.667 0.00 0.00 33.27 3.18
392 393 4.616553 TCCAACCCTAGTTAGCATAGACA 58.383 43.478 0.00 0.00 33.27 3.41
393 394 4.894114 TCTCCAACCCTAGTTAGCATAGAC 59.106 45.833 0.00 0.00 33.27 2.59
394 395 4.894114 GTCTCCAACCCTAGTTAGCATAGA 59.106 45.833 0.00 0.00 33.27 1.98
395 396 4.261656 CGTCTCCAACCCTAGTTAGCATAG 60.262 50.000 0.00 0.00 33.27 2.23
396 397 3.635373 CGTCTCCAACCCTAGTTAGCATA 59.365 47.826 0.00 0.00 33.27 3.14
397 398 2.431057 CGTCTCCAACCCTAGTTAGCAT 59.569 50.000 0.00 0.00 33.27 3.79
398 399 1.822990 CGTCTCCAACCCTAGTTAGCA 59.177 52.381 0.00 0.00 33.27 3.49
399 400 1.823610 ACGTCTCCAACCCTAGTTAGC 59.176 52.381 0.00 0.00 33.27 3.09
400 401 2.416972 GCACGTCTCCAACCCTAGTTAG 60.417 54.545 0.00 0.00 33.27 2.34
401 402 1.547372 GCACGTCTCCAACCCTAGTTA 59.453 52.381 0.00 0.00 33.27 2.24
402 403 0.320697 GCACGTCTCCAACCCTAGTT 59.679 55.000 0.00 0.00 36.33 2.24
403 404 1.874345 CGCACGTCTCCAACCCTAGT 61.874 60.000 0.00 0.00 0.00 2.57
404 405 1.153823 CGCACGTCTCCAACCCTAG 60.154 63.158 0.00 0.00 0.00 3.02
405 406 1.466025 AACGCACGTCTCCAACCCTA 61.466 55.000 0.00 0.00 0.00 3.53
406 407 2.710724 GAACGCACGTCTCCAACCCT 62.711 60.000 0.00 0.00 0.00 4.34
407 408 2.280592 AACGCACGTCTCCAACCC 60.281 61.111 0.00 0.00 0.00 4.11
408 409 2.654912 CGAACGCACGTCTCCAACC 61.655 63.158 0.00 0.00 0.00 3.77
409 410 1.485032 AACGAACGCACGTCTCCAAC 61.485 55.000 7.84 0.00 45.83 3.77
410 411 1.227031 AACGAACGCACGTCTCCAA 60.227 52.632 7.84 0.00 45.83 3.53
411 412 1.947146 CAACGAACGCACGTCTCCA 60.947 57.895 7.84 0.00 45.83 3.86
412 413 2.844146 CAACGAACGCACGTCTCC 59.156 61.111 7.84 0.00 45.83 3.71
413 414 2.167918 GCAACGAACGCACGTCTC 59.832 61.111 7.84 0.00 45.83 3.36
414 415 2.279252 AGCAACGAACGCACGTCT 60.279 55.556 7.84 0.17 45.83 4.18
415 416 1.000233 TAGAGCAACGAACGCACGTC 61.000 55.000 7.84 0.00 45.83 4.34
417 418 0.179282 GTTAGAGCAACGAACGCACG 60.179 55.000 0.00 0.48 39.31 5.34
418 419 0.163146 GGTTAGAGCAACGAACGCAC 59.837 55.000 0.00 0.00 38.09 5.34
419 420 0.947180 GGGTTAGAGCAACGAACGCA 60.947 55.000 14.53 0.00 42.86 5.24
420 421 1.785951 GGGTTAGAGCAACGAACGC 59.214 57.895 0.00 7.73 39.00 4.84
421 422 0.387622 TCGGGTTAGAGCAACGAACG 60.388 55.000 0.00 0.00 38.09 3.95
422 423 1.336609 ACTCGGGTTAGAGCAACGAAC 60.337 52.381 0.00 0.00 41.77 3.95
423 424 0.963962 ACTCGGGTTAGAGCAACGAA 59.036 50.000 0.00 0.00 41.77 3.85
424 425 0.963962 AACTCGGGTTAGAGCAACGA 59.036 50.000 0.00 0.00 41.77 3.85
425 426 1.792006 AAACTCGGGTTAGAGCAACG 58.208 50.000 0.00 0.00 41.77 4.10
426 427 2.483106 GGAAAACTCGGGTTAGAGCAAC 59.517 50.000 0.00 0.00 41.77 4.17
427 428 2.551504 GGGAAAACTCGGGTTAGAGCAA 60.552 50.000 0.00 0.00 41.77 3.91
428 429 1.002773 GGGAAAACTCGGGTTAGAGCA 59.997 52.381 0.00 0.00 41.77 4.26
429 430 1.002773 TGGGAAAACTCGGGTTAGAGC 59.997 52.381 0.00 0.00 41.77 4.09
430 431 3.629142 ATGGGAAAACTCGGGTTAGAG 57.371 47.619 0.00 0.00 43.56 2.43
431 432 3.073356 ACAATGGGAAAACTCGGGTTAGA 59.927 43.478 0.00 0.00 34.90 2.10
432 433 3.418047 ACAATGGGAAAACTCGGGTTAG 58.582 45.455 0.00 0.00 34.90 2.34
433 434 3.512219 ACAATGGGAAAACTCGGGTTA 57.488 42.857 0.00 0.00 34.90 2.85
434 435 2.375014 ACAATGGGAAAACTCGGGTT 57.625 45.000 0.00 0.00 37.24 4.11
435 436 2.375014 AACAATGGGAAAACTCGGGT 57.625 45.000 0.00 0.00 0.00 5.28
436 437 3.130340 CCATAACAATGGGAAAACTCGGG 59.870 47.826 0.00 0.00 38.04 5.14
437 438 4.370364 CCATAACAATGGGAAAACTCGG 57.630 45.455 0.00 0.00 38.04 4.63
447 448 0.455410 CCACGTGCCCATAACAATGG 59.545 55.000 10.91 0.00 41.34 3.16
448 449 1.132262 GTCCACGTGCCCATAACAATG 59.868 52.381 10.91 0.00 0.00 2.82
449 450 1.271652 TGTCCACGTGCCCATAACAAT 60.272 47.619 10.91 0.00 0.00 2.71
450 451 0.108774 TGTCCACGTGCCCATAACAA 59.891 50.000 10.91 0.00 0.00 2.83
451 452 0.326595 ATGTCCACGTGCCCATAACA 59.673 50.000 10.91 7.24 0.00 2.41
452 453 0.732571 CATGTCCACGTGCCCATAAC 59.267 55.000 10.91 1.55 0.00 1.89
453 454 0.393673 CCATGTCCACGTGCCCATAA 60.394 55.000 10.91 0.00 0.00 1.90
454 455 1.223211 CCATGTCCACGTGCCCATA 59.777 57.895 10.91 0.00 0.00 2.74
455 456 2.045045 CCATGTCCACGTGCCCAT 60.045 61.111 10.91 11.05 0.00 4.00
456 457 3.245346 TCCATGTCCACGTGCCCA 61.245 61.111 10.91 9.00 0.00 5.36
457 458 2.436646 CTCCATGTCCACGTGCCC 60.437 66.667 10.91 2.61 0.00 5.36
458 459 3.127533 GCTCCATGTCCACGTGCC 61.128 66.667 10.91 3.02 0.00 5.01
459 460 2.046892 AGCTCCATGTCCACGTGC 60.047 61.111 10.91 0.00 0.00 5.34
460 461 1.448540 GGAGCTCCATGTCCACGTG 60.449 63.158 28.43 9.08 35.64 4.49
461 462 1.480212 TTGGAGCTCCATGTCCACGT 61.480 55.000 35.42 0.00 46.97 4.49
462 463 0.742281 CTTGGAGCTCCATGTCCACG 60.742 60.000 35.42 13.94 46.97 4.94
463 464 1.028868 GCTTGGAGCTCCATGTCCAC 61.029 60.000 36.00 22.58 46.97 4.02
464 465 1.300963 GCTTGGAGCTCCATGTCCA 59.699 57.895 36.00 22.72 46.97 4.02
465 466 1.452833 GGCTTGGAGCTCCATGTCC 60.453 63.158 36.00 32.31 46.97 4.02
466 467 1.028868 GTGGCTTGGAGCTCCATGTC 61.029 60.000 34.90 34.90 46.97 3.06
467 468 1.001641 GTGGCTTGGAGCTCCATGT 60.002 57.895 36.00 0.00 46.97 3.21
468 469 0.395311 ATGTGGCTTGGAGCTCCATG 60.395 55.000 35.42 34.52 46.97 3.66
469 470 0.333993 AATGTGGCTTGGAGCTCCAT 59.666 50.000 35.42 16.65 46.97 3.41
470 471 0.609957 CAATGTGGCTTGGAGCTCCA 60.610 55.000 32.00 32.00 45.94 3.86
471 472 0.610232 ACAATGTGGCTTGGAGCTCC 60.610 55.000 26.78 26.78 41.99 4.70
472 473 2.012673 CTACAATGTGGCTTGGAGCTC 58.987 52.381 4.71 4.71 41.99 4.09
473 474 1.630369 TCTACAATGTGGCTTGGAGCT 59.370 47.619 0.00 0.00 41.99 4.09
474 475 2.113860 TCTACAATGTGGCTTGGAGC 57.886 50.000 0.00 0.00 37.06 4.70
475 476 5.649782 AAATTCTACAATGTGGCTTGGAG 57.350 39.130 0.00 0.00 38.26 3.86
476 477 5.304101 ACAAAATTCTACAATGTGGCTTGGA 59.696 36.000 0.00 0.00 0.00 3.53
477 478 5.540911 ACAAAATTCTACAATGTGGCTTGG 58.459 37.500 0.00 0.00 0.00 3.61
478 479 8.761575 ATAACAAAATTCTACAATGTGGCTTG 57.238 30.769 0.00 0.00 0.00 4.01
592 603 1.676678 CCTCCTAGCTGCACGGCTTA 61.677 60.000 9.65 0.00 42.97 3.09
594 605 3.465403 CCTCCTAGCTGCACGGCT 61.465 66.667 9.29 9.29 45.29 5.52
595 606 3.438017 CTCCTCCTAGCTGCACGGC 62.438 68.421 1.02 0.00 0.00 5.68
598 609 2.503546 GGCTCCTCCTAGCTGCAC 59.496 66.667 1.02 0.00 42.37 4.57
630 641 4.688966 GCTGGGGATCGCGGGATC 62.689 72.222 28.94 28.94 46.85 3.36
637 648 0.611896 AGGTTTTTGGCTGGGGATCG 60.612 55.000 0.00 0.00 0.00 3.69
649 660 1.620323 GGCAGGATCTTGCAGGTTTTT 59.380 47.619 28.46 0.00 45.86 1.94
650 661 1.260544 GGCAGGATCTTGCAGGTTTT 58.739 50.000 28.46 0.00 45.86 2.43
752 773 0.095417 GGCTTGCGACGCTCTTAAAG 59.905 55.000 22.08 16.00 0.00 1.85
755 776 2.506217 CGGCTTGCGACGCTCTTA 60.506 61.111 22.08 0.00 33.20 2.10
771 792 2.842208 TTTGGTGAACTTTCAGTGCG 57.158 45.000 0.00 0.00 37.98 5.34
819 950 2.238942 TATGCAGTCCAACTATGCGG 57.761 50.000 0.00 0.00 42.92 5.69
1044 1182 5.069518 AGGTTGGTTGGTTGGTTATAACT 57.930 39.130 15.05 0.00 0.00 2.24
1098 1237 2.291153 TGGTGGCCGAGTACTAGTAACT 60.291 50.000 3.61 4.53 0.00 2.24
1099 1238 2.094675 TGGTGGCCGAGTACTAGTAAC 58.905 52.381 3.61 1.43 0.00 2.50
1100 1239 2.512692 TGGTGGCCGAGTACTAGTAA 57.487 50.000 3.61 0.00 0.00 2.24
1102 1241 1.112113 CATGGTGGCCGAGTACTAGT 58.888 55.000 0.00 0.00 0.00 2.57
1103 1242 1.399714 TCATGGTGGCCGAGTACTAG 58.600 55.000 0.00 0.00 0.00 2.57
1104 1243 1.754803 CTTCATGGTGGCCGAGTACTA 59.245 52.381 0.00 0.00 0.00 1.82
1105 1244 0.537188 CTTCATGGTGGCCGAGTACT 59.463 55.000 0.00 0.00 0.00 2.73
1106 1245 0.249398 ACTTCATGGTGGCCGAGTAC 59.751 55.000 0.00 0.00 0.00 2.73
1384 1523 1.522676 CGATCGTAACATGCGCAGAAT 59.477 47.619 18.32 6.53 0.00 2.40
1407 1584 6.617782 AAGATCAGAGAAACAATCAGAGGA 57.382 37.500 0.00 0.00 0.00 3.71
1425 1602 3.639538 CATGGCAATGCAAGCTAAGATC 58.360 45.455 7.79 0.00 0.00 2.75
1484 1661 5.043903 GTCCGATCGAGAAGAAATTCATCA 58.956 41.667 18.66 0.00 0.00 3.07
1485 1662 4.446051 GGTCCGATCGAGAAGAAATTCATC 59.554 45.833 18.66 0.00 0.00 2.92
1486 1663 4.372656 GGTCCGATCGAGAAGAAATTCAT 58.627 43.478 18.66 0.00 0.00 2.57
1492 1669 1.103803 CAGGGTCCGATCGAGAAGAA 58.896 55.000 18.66 0.00 0.00 2.52
1497 1674 1.476891 TCTTTTCAGGGTCCGATCGAG 59.523 52.381 18.66 6.99 0.00 4.04
1507 1684 5.754890 CAGGAAACAAACAATCTTTTCAGGG 59.245 40.000 0.00 0.00 30.88 4.45
1513 1696 5.124776 TGTCGTCAGGAAACAAACAATCTTT 59.875 36.000 0.00 0.00 0.00 2.52
1533 1716 1.403514 GGAGAGCAGAGGAAACTGTCG 60.404 57.143 0.00 0.00 44.43 4.35
1817 2000 3.567797 GCGAGCGCATCCTTCCAC 61.568 66.667 11.47 0.00 41.49 4.02
1944 2127 4.760047 CGTGGACTTGGCGGGGAG 62.760 72.222 0.00 0.00 0.00 4.30
2000 2183 1.378531 GCCAGAACATATCAACGCCA 58.621 50.000 0.00 0.00 0.00 5.69
2075 2258 3.856508 GCGTAAGTCTTGAGCGCA 58.143 55.556 11.47 0.00 46.23 6.09
2773 2956 4.475944 GACACAACGAATTTGAGGATTGG 58.524 43.478 0.00 0.00 38.73 3.16
2850 3038 5.441718 TGGCAGATTAGAACTCTCCATTT 57.558 39.130 0.00 0.00 0.00 2.32
2895 3087 0.179065 CTTGCTCATCTCCGGATGCA 60.179 55.000 3.57 8.34 46.41 3.96
3088 3280 1.647545 GCAGCGCCTTGATGTTGCTA 61.648 55.000 2.29 0.00 38.98 3.49
3434 3626 4.415150 TGGCTGGCTGCTAGTGGC 62.415 66.667 14.66 3.46 42.39 5.01
3598 3790 6.777213 ACAGTATAGAGAAGTAACCTGTGG 57.223 41.667 0.00 0.00 0.00 4.17
3810 4009 2.882927 CCAAGTGGATGGCAATCATG 57.117 50.000 2.85 0.00 35.97 3.07
3831 4030 7.326547 CCTCTTGTTTTCGTAACTCTTCTAGAC 59.673 40.741 0.00 0.00 0.00 2.59
3845 4054 2.563179 TCTCTCTCCCCTCTTGTTTTCG 59.437 50.000 0.00 0.00 0.00 3.46
3846 4055 3.835395 TCTCTCTCTCCCCTCTTGTTTTC 59.165 47.826 0.00 0.00 0.00 2.29
3847 4056 3.837731 CTCTCTCTCTCCCCTCTTGTTTT 59.162 47.826 0.00 0.00 0.00 2.43
3851 4060 2.509548 TCTCTCTCTCTCTCCCCTCTTG 59.490 54.545 0.00 0.00 0.00 3.02
3852 4061 2.858644 TCTCTCTCTCTCTCCCCTCTT 58.141 52.381 0.00 0.00 0.00 2.85
3854 4063 3.202151 TCTTTCTCTCTCTCTCTCCCCTC 59.798 52.174 0.00 0.00 0.00 4.30
3855 4064 3.197983 TCTTTCTCTCTCTCTCTCCCCT 58.802 50.000 0.00 0.00 0.00 4.79
3857 4066 4.792068 TCATCTTTCTCTCTCTCTCTCCC 58.208 47.826 0.00 0.00 0.00 4.30
3858 4067 4.276926 GCTCATCTTTCTCTCTCTCTCTCC 59.723 50.000 0.00 0.00 0.00 3.71
3873 4085 4.792513 ATTTCTCATCCAGGCTCATCTT 57.207 40.909 0.00 0.00 0.00 2.40
3882 4094 2.092968 TCCCGTGGAATTTCTCATCCAG 60.093 50.000 0.00 0.00 46.01 3.86
4174 4704 2.673200 GCCTGAGGTGGATGAGCCA 61.673 63.158 0.00 0.00 46.96 4.75
4176 4706 2.191641 GGCCTGAGGTGGATGAGC 59.808 66.667 0.00 0.00 0.00 4.26
4260 4790 2.895372 GGTAGATGTTGCGCCGGG 60.895 66.667 4.18 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.