Multiple sequence alignment - TraesCS6D01G190300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G190300 chr6D 100.000 3559 0 0 1 3559 263024737 263021179 0.000000e+00 6573.0
1 TraesCS6D01G190300 chr6D 92.157 306 19 4 3085 3388 114160411 114160109 9.130000e-116 427.0
2 TraesCS6D01G190300 chr6D 92.053 302 22 2 3088 3388 339681762 339681462 1.180000e-114 424.0
3 TraesCS6D01G190300 chr6B 91.943 1266 50 22 32 1284 346784742 346785968 0.000000e+00 1725.0
4 TraesCS6D01G190300 chr6B 90.759 790 37 14 1991 2746 346789293 346790080 0.000000e+00 1022.0
5 TraesCS6D01G190300 chr6B 95.000 520 18 6 1368 1883 346785995 346786510 0.000000e+00 809.0
6 TraesCS6D01G190300 chr6B 88.387 155 8 4 2763 2907 346790140 346790294 1.020000e-40 178.0
7 TraesCS6D01G190300 chr6B 96.907 97 3 0 2905 3001 346790327 346790423 2.840000e-36 163.0
8 TraesCS6D01G190300 chr6B 90.385 52 5 0 1867 1918 346786590 346786641 6.380000e-08 69.4
9 TraesCS6D01G190300 chr6A 93.135 976 44 16 1743 2702 358158830 358157862 0.000000e+00 1410.0
10 TraesCS6D01G190300 chr6A 95.840 649 17 8 245 889 358162724 358162082 0.000000e+00 1040.0
11 TraesCS6D01G190300 chr6A 95.850 506 12 2 947 1444 358160908 358160404 0.000000e+00 809.0
12 TraesCS6D01G190300 chr6A 87.340 624 14 5 2631 3229 358157890 358157307 0.000000e+00 654.0
13 TraesCS6D01G190300 chr6A 96.855 318 7 3 1433 1748 358159400 358159084 2.430000e-146 529.0
14 TraesCS6D01G190300 chr5A 93.311 299 19 1 3091 3388 662366330 662366032 1.170000e-119 440.0
15 TraesCS6D01G190300 chr1D 92.787 305 20 2 3085 3388 418572814 418572511 1.170000e-119 440.0
16 TraesCS6D01G190300 chr7D 92.384 302 21 2 3089 3388 607214422 607214723 2.540000e-116 429.0
17 TraesCS6D01G190300 chr7D 95.882 170 7 0 3390 3559 514847503 514847334 3.500000e-70 276.0
18 TraesCS6D01G190300 chr1B 92.384 302 19 3 3088 3388 592264864 592264566 9.130000e-116 427.0
19 TraesCS6D01G190300 chr1B 92.053 302 23 1 3088 3388 169692579 169692880 1.180000e-114 424.0
20 TraesCS6D01G190300 chr1B 92.053 302 20 3 3088 3388 592305995 592305697 4.250000e-114 422.0
21 TraesCS6D01G190300 chr3D 92.079 303 22 2 3088 3388 20401296 20400994 3.280000e-115 425.0
22 TraesCS6D01G190300 chr3D 93.605 172 9 2 3388 3559 433521039 433521208 4.560000e-64 255.0
23 TraesCS6D01G190300 chr4D 93.491 169 11 0 3391 3559 85167010 85167178 5.900000e-63 252.0
24 TraesCS6D01G190300 chr4D 92.982 171 10 1 3389 3559 424057370 424057538 7.630000e-62 248.0
25 TraesCS6D01G190300 chr4D 92.529 174 10 2 3389 3559 396423790 396423963 2.740000e-61 246.0
26 TraesCS6D01G190300 chr3B 92.571 175 11 1 3387 3559 404421749 404421923 2.120000e-62 250.0
27 TraesCS6D01G190300 chr3B 92.529 174 11 1 3388 3559 104645059 104644886 7.630000e-62 248.0
28 TraesCS6D01G190300 chr3B 92.486 173 11 2 3388 3559 561589562 561589391 2.740000e-61 246.0
29 TraesCS6D01G190300 chrUn 92.000 175 13 1 3385 3559 95760497 95760324 9.870000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G190300 chr6D 263021179 263024737 3558 True 6573.000000 6573 100.000000 1 3559 1 chr6D.!!$R2 3558
1 TraesCS6D01G190300 chr6B 346784742 346790423 5681 False 661.066667 1725 92.230167 32 3001 6 chr6B.!!$F1 2969
2 TraesCS6D01G190300 chr6A 358157307 358162724 5417 True 888.400000 1410 93.804000 245 3229 5 chr6A.!!$R1 2984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 387 0.044244 ACCCATAGCCACCCTGTAGT 59.956 55.000 0.00 0.0 0.00 2.73 F
594 607 1.757118 CTCAGATCTGCGGAAGGGTAA 59.243 52.381 18.36 0.0 0.00 2.85 F
2293 7428 1.457455 AAACCCTGGGTGTTGGCTG 60.457 57.895 21.38 0.0 35.34 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 7264 1.001746 CTCTCAACAGCCTGCAGAGAA 59.998 52.381 17.39 3.42 32.63 2.87 R
2416 7551 0.037326 CAGTTGCTTCTCCACGCCTA 60.037 55.000 0.00 0.00 0.00 3.93 R
3289 8563 0.039437 TCGTCAAAGTCGGAGCTGTC 60.039 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.595198 GTTGCCCTTACACTTAATCGAC 57.405 45.455 0.00 0.00 0.00 4.20
22 23 4.251268 GTTGCCCTTACACTTAATCGACT 58.749 43.478 0.00 0.00 0.00 4.18
23 24 4.546829 TGCCCTTACACTTAATCGACTT 57.453 40.909 0.00 0.00 0.00 3.01
24 25 4.250464 TGCCCTTACACTTAATCGACTTG 58.750 43.478 0.00 0.00 0.00 3.16
25 26 4.020928 TGCCCTTACACTTAATCGACTTGA 60.021 41.667 0.00 0.00 0.00 3.02
26 27 4.567159 GCCCTTACACTTAATCGACTTGAG 59.433 45.833 0.00 0.00 0.00 3.02
27 28 5.109903 CCCTTACACTTAATCGACTTGAGG 58.890 45.833 0.00 0.00 0.00 3.86
28 29 5.109903 CCTTACACTTAATCGACTTGAGGG 58.890 45.833 0.00 0.00 30.35 4.30
29 30 3.611766 ACACTTAATCGACTTGAGGGG 57.388 47.619 0.00 0.00 28.21 4.79
30 31 2.236395 ACACTTAATCGACTTGAGGGGG 59.764 50.000 0.00 0.00 28.21 5.40
48 49 5.762279 AGGGGGTTACATATTTACACTTGG 58.238 41.667 0.00 0.00 0.00 3.61
49 50 5.254501 AGGGGGTTACATATTTACACTTGGT 59.745 40.000 0.00 0.00 0.00 3.67
59 60 9.984590 ACATATTTACACTTGGTACCCTTATTT 57.015 29.630 10.07 0.00 0.00 1.40
122 132 9.062524 AGCAACGGCATAATTTTATGAACTATA 57.937 29.630 13.22 0.00 42.38 1.31
144 154 0.837272 CCAGGTCCATACACCGGAAT 59.163 55.000 9.46 0.00 41.90 3.01
154 164 1.296392 CACCGGAATGACTCTGCCA 59.704 57.895 9.46 0.00 0.00 4.92
155 165 0.107508 CACCGGAATGACTCTGCCAT 60.108 55.000 9.46 0.00 0.00 4.40
156 166 0.179000 ACCGGAATGACTCTGCCATC 59.821 55.000 9.46 0.00 0.00 3.51
157 167 0.467384 CCGGAATGACTCTGCCATCT 59.533 55.000 0.00 0.00 0.00 2.90
158 168 1.539929 CCGGAATGACTCTGCCATCTC 60.540 57.143 0.00 0.00 0.00 2.75
208 218 0.603975 GTGCTCCCTGTCCACTCAAC 60.604 60.000 0.00 0.00 0.00 3.18
209 219 1.374758 GCTCCCTGTCCACTCAACG 60.375 63.158 0.00 0.00 0.00 4.10
215 225 1.498865 CTGTCCACTCAACGCACACC 61.499 60.000 0.00 0.00 0.00 4.16
216 226 1.522806 GTCCACTCAACGCACACCA 60.523 57.895 0.00 0.00 0.00 4.17
222 232 1.139989 CTCAACGCACACCAGTACAG 58.860 55.000 0.00 0.00 0.00 2.74
255 265 5.365314 ACTTTGGCCTCCTTATTTGAAACAA 59.635 36.000 3.32 0.00 0.00 2.83
296 306 2.625087 CCTCCCCTTCCCGTTAGTTAGA 60.625 54.545 0.00 0.00 0.00 2.10
297 307 3.102204 CTCCCCTTCCCGTTAGTTAGAA 58.898 50.000 0.00 0.00 0.00 2.10
335 345 9.578439 AGAAACTTCTCATCTCAAAAACAAAAG 57.422 29.630 0.00 0.00 29.94 2.27
336 346 8.707938 AAACTTCTCATCTCAAAAACAAAAGG 57.292 30.769 0.00 0.00 0.00 3.11
372 384 0.331616 GAAACCCATAGCCACCCTGT 59.668 55.000 0.00 0.00 0.00 4.00
375 387 0.044244 ACCCATAGCCACCCTGTAGT 59.956 55.000 0.00 0.00 0.00 2.73
508 520 5.415221 TCGTGAGAAATTTTGCAGGTTTTT 58.585 33.333 11.25 0.00 37.03 1.94
594 607 1.757118 CTCAGATCTGCGGAAGGGTAA 59.243 52.381 18.36 0.00 0.00 2.85
766 780 3.363341 TTGGTTGCGAATCTTTGGAAC 57.637 42.857 6.11 6.11 40.82 3.62
806 821 4.444388 GGGTTCTTTTGTTGCGAATCTTTC 59.556 41.667 0.00 0.00 0.00 2.62
849 864 4.642885 ACCAGAAAGAGTCGGAGAATAGAG 59.357 45.833 0.00 0.00 39.69 2.43
899 1947 2.811317 GGGTGCTCTTCGTGCTCG 60.811 66.667 0.81 0.81 38.55 5.03
954 2095 3.673902 TCATCTTGGATGCGTTTCTTGA 58.326 40.909 2.95 0.00 0.00 3.02
955 2096 3.686241 TCATCTTGGATGCGTTTCTTGAG 59.314 43.478 2.95 0.00 0.00 3.02
956 2097 3.126001 TCTTGGATGCGTTTCTTGAGT 57.874 42.857 0.00 0.00 0.00 3.41
957 2098 3.476552 TCTTGGATGCGTTTCTTGAGTT 58.523 40.909 0.00 0.00 0.00 3.01
958 2099 3.498397 TCTTGGATGCGTTTCTTGAGTTC 59.502 43.478 0.00 0.00 0.00 3.01
959 2100 3.126001 TGGATGCGTTTCTTGAGTTCT 57.874 42.857 0.00 0.00 0.00 3.01
960 2101 3.476552 TGGATGCGTTTCTTGAGTTCTT 58.523 40.909 0.00 0.00 0.00 2.52
961 2102 3.882888 TGGATGCGTTTCTTGAGTTCTTT 59.117 39.130 0.00 0.00 0.00 2.52
1366 2515 4.124851 AGTCTATGGCGTCCAAAGTTAG 57.875 45.455 2.68 1.41 36.95 2.34
1563 3727 7.958088 TCCACGTTCAGTCATATATCCATTAA 58.042 34.615 0.00 0.00 0.00 1.40
1722 3888 8.960591 CATGTTCAGTTATCTACCCATCTTTTT 58.039 33.333 0.00 0.00 0.00 1.94
1807 4233 6.591935 TCTTTTCTTCCCGATTATGCTATGT 58.408 36.000 0.00 0.00 0.00 2.29
1808 4234 7.054124 TCTTTTCTTCCCGATTATGCTATGTT 58.946 34.615 0.00 0.00 0.00 2.71
1809 4235 8.208224 TCTTTTCTTCCCGATTATGCTATGTTA 58.792 33.333 0.00 0.00 0.00 2.41
2016 7125 4.142730 CCTGCTCATAGTTCTGTTTGCTTC 60.143 45.833 0.00 0.00 0.00 3.86
2128 7263 6.210078 GCAGTCTGGTGCTATACTAACTAAG 58.790 44.000 1.14 0.00 40.54 2.18
2129 7264 6.183360 GCAGTCTGGTGCTATACTAACTAAGT 60.183 42.308 1.14 0.00 40.54 2.24
2156 7291 1.538950 CAGGCTGTTGAGAGGAAAAGC 59.461 52.381 6.28 0.00 0.00 3.51
2240 7375 2.079925 GAGGATCCAGCACAAACAGAC 58.920 52.381 15.82 0.00 0.00 3.51
2293 7428 1.457455 AAACCCTGGGTGTTGGCTG 60.457 57.895 21.38 0.00 35.34 4.85
2416 7551 2.103153 TCCAGACCAAGTGGAGAAGT 57.897 50.000 3.83 0.00 39.28 3.01
2417 7552 3.254093 TCCAGACCAAGTGGAGAAGTA 57.746 47.619 3.83 0.00 39.28 2.24
2419 7554 2.234908 CCAGACCAAGTGGAGAAGTAGG 59.765 54.545 3.83 0.00 37.23 3.18
2440 7575 1.073722 TGGAGAAGCAACTGGCCAG 59.926 57.895 31.60 31.60 46.50 4.85
2448 7583 1.099879 GCAACTGGCCAGCTCCATAG 61.100 60.000 33.06 14.84 35.22 2.23
2450 7585 1.142465 CAACTGGCCAGCTCCATAGAT 59.858 52.381 33.06 6.80 35.22 1.98
2452 7587 0.605860 CTGGCCAGCTCCATAGATGC 60.606 60.000 22.33 0.00 37.82 3.91
2480 7615 1.153349 GATGGTGAGCCGGAACCTC 60.153 63.158 18.75 10.92 37.36 3.85
2496 7631 0.807667 CCTCAAGCGAACTGATCCCG 60.808 60.000 0.00 0.00 0.00 5.14
2599 7737 5.383476 TCTTAGCGGCTAGTCCTAACTAAT 58.617 41.667 9.98 0.00 37.53 1.73
2683 7869 2.440817 GGTATGGGCGGTGGTAGCT 61.441 63.158 0.00 0.00 34.52 3.32
2684 7870 1.227556 GTATGGGCGGTGGTAGCTG 60.228 63.158 0.00 0.00 34.52 4.24
2793 8022 5.721876 TTGTTGTTCCACTGTAACTAACG 57.278 39.130 0.00 0.00 0.00 3.18
3003 8277 4.852134 TGCAATTGTCAATGCACTTACT 57.148 36.364 14.69 0.00 46.87 2.24
3004 8278 5.199024 TGCAATTGTCAATGCACTTACTT 57.801 34.783 14.69 0.00 46.87 2.24
3005 8279 5.599732 TGCAATTGTCAATGCACTTACTTT 58.400 33.333 14.69 0.00 46.87 2.66
3006 8280 5.691305 TGCAATTGTCAATGCACTTACTTTC 59.309 36.000 14.69 0.00 46.87 2.62
3007 8281 5.691305 GCAATTGTCAATGCACTTACTTTCA 59.309 36.000 7.40 0.00 42.12 2.69
3008 8282 6.200665 GCAATTGTCAATGCACTTACTTTCAA 59.799 34.615 7.40 0.00 42.12 2.69
3009 8283 7.254387 GCAATTGTCAATGCACTTACTTTCAAA 60.254 33.333 7.40 0.00 42.12 2.69
3010 8284 8.602328 CAATTGTCAATGCACTTACTTTCAAAA 58.398 29.630 0.00 0.00 0.00 2.44
3011 8285 8.715191 ATTGTCAATGCACTTACTTTCAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
3062 8336 4.859629 GTGGATGTTGTTATCCTCGTTC 57.140 45.455 6.37 0.00 45.59 3.95
3116 8390 2.492019 AAACGAGGCAAAAGACTTGC 57.508 45.000 0.78 0.78 44.22 4.01
3133 8407 8.767478 AAGACTTGCCATTTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
3134 8408 8.125978 AGACTTGCCATTTTCATTGATTAAGA 57.874 30.769 0.00 0.00 0.00 2.10
3135 8409 8.587608 AGACTTGCCATTTTCATTGATTAAGAA 58.412 29.630 0.00 0.00 0.00 2.52
3137 8411 8.587608 ACTTGCCATTTTCATTGATTAAGAAGA 58.412 29.630 0.00 0.00 0.00 2.87
3138 8412 9.426837 CTTGCCATTTTCATTGATTAAGAAGAA 57.573 29.630 0.00 0.00 0.00 2.52
3139 8413 9.775854 TTGCCATTTTCATTGATTAAGAAGAAA 57.224 25.926 0.00 0.00 0.00 2.52
3140 8414 9.775854 TGCCATTTTCATTGATTAAGAAGAAAA 57.224 25.926 0.00 0.00 38.72 2.29
3156 8430 4.514781 AGAAAAGAATTGCCCGGTTAAC 57.485 40.909 0.00 0.00 0.00 2.01
3203 8477 1.748493 ACAACACAACCCACATGACAC 59.252 47.619 0.00 0.00 0.00 3.67
3233 8507 4.263572 CCAACCTGGCCACCGACA 62.264 66.667 0.00 0.00 0.00 4.35
3234 8508 2.034066 CAACCTGGCCACCGACAT 59.966 61.111 0.00 0.00 0.00 3.06
3235 8509 2.034066 AACCTGGCCACCGACATG 59.966 61.111 0.00 0.00 0.00 3.21
3236 8510 3.567579 AACCTGGCCACCGACATGG 62.568 63.158 0.00 1.37 46.41 3.66
3237 8511 3.716195 CCTGGCCACCGACATGGA 61.716 66.667 0.00 0.00 43.02 3.41
3238 8512 2.350895 CTGGCCACCGACATGGAA 59.649 61.111 0.00 0.00 43.02 3.53
3239 8513 2.033448 TGGCCACCGACATGGAAC 59.967 61.111 0.00 0.00 43.02 3.62
3252 8526 3.419793 TGGAACAGAAGCCACAAGG 57.580 52.632 0.00 0.00 38.23 3.61
3253 8527 0.178992 TGGAACAGAAGCCACAAGGG 60.179 55.000 0.00 0.00 40.85 3.95
3277 8551 3.430862 CCAACGGATGGCCACACG 61.431 66.667 24.53 24.53 43.80 4.49
3278 8552 4.101790 CAACGGATGGCCACACGC 62.102 66.667 25.66 9.14 0.00 5.34
3283 8557 4.465512 GATGGCCACACGCGCAAG 62.466 66.667 8.16 0.24 38.94 4.01
3295 8569 3.349006 CGCAAGCAACCGACAGCT 61.349 61.111 0.00 0.00 44.31 4.24
3296 8570 2.558313 GCAAGCAACCGACAGCTC 59.442 61.111 0.00 0.00 40.90 4.09
3297 8571 2.970974 GCAAGCAACCGACAGCTCC 61.971 63.158 0.00 0.00 40.90 4.70
3298 8572 2.357517 AAGCAACCGACAGCTCCG 60.358 61.111 0.00 0.00 40.90 4.63
3299 8573 2.867855 AAGCAACCGACAGCTCCGA 61.868 57.895 6.61 0.00 40.90 4.55
3300 8574 3.112709 GCAACCGACAGCTCCGAC 61.113 66.667 6.61 0.00 0.00 4.79
3301 8575 2.651361 CAACCGACAGCTCCGACT 59.349 61.111 6.61 0.00 0.00 4.18
3302 8576 1.006102 CAACCGACAGCTCCGACTT 60.006 57.895 6.61 0.00 0.00 3.01
3303 8577 0.600255 CAACCGACAGCTCCGACTTT 60.600 55.000 6.61 0.00 0.00 2.66
3304 8578 0.600255 AACCGACAGCTCCGACTTTG 60.600 55.000 6.61 0.00 0.00 2.77
3305 8579 1.289066 CCGACAGCTCCGACTTTGA 59.711 57.895 6.61 0.00 0.00 2.69
3306 8580 1.009389 CCGACAGCTCCGACTTTGAC 61.009 60.000 6.61 0.00 0.00 3.18
3307 8581 1.337817 CGACAGCTCCGACTTTGACG 61.338 60.000 0.00 0.00 0.00 4.35
3308 8582 0.039437 GACAGCTCCGACTTTGACGA 60.039 55.000 0.00 0.00 0.00 4.20
3309 8583 0.318784 ACAGCTCCGACTTTGACGAC 60.319 55.000 0.00 0.00 0.00 4.34
3310 8584 1.081376 AGCTCCGACTTTGACGACG 60.081 57.895 0.00 0.00 0.00 5.12
3311 8585 1.081641 GCTCCGACTTTGACGACGA 60.082 57.895 0.00 0.00 0.00 4.20
3312 8586 1.066114 GCTCCGACTTTGACGACGAG 61.066 60.000 0.00 0.00 0.00 4.18
3313 8587 1.066114 CTCCGACTTTGACGACGAGC 61.066 60.000 0.00 0.00 0.00 5.03
3314 8588 1.371267 CCGACTTTGACGACGAGCA 60.371 57.895 0.00 0.00 0.00 4.26
3315 8589 0.937699 CCGACTTTGACGACGAGCAA 60.938 55.000 0.00 2.62 0.00 3.91
3316 8590 0.158928 CGACTTTGACGACGAGCAAC 59.841 55.000 0.00 0.00 0.00 4.17
3317 8591 1.205657 GACTTTGACGACGAGCAACA 58.794 50.000 0.00 0.00 0.00 3.33
3318 8592 0.928229 ACTTTGACGACGAGCAACAC 59.072 50.000 0.00 0.00 0.00 3.32
3319 8593 0.927537 CTTTGACGACGAGCAACACA 59.072 50.000 0.00 0.00 0.00 3.72
3320 8594 1.326245 CTTTGACGACGAGCAACACAA 59.674 47.619 0.00 0.00 0.00 3.33
3321 8595 0.927537 TTGACGACGAGCAACACAAG 59.072 50.000 0.00 0.00 0.00 3.16
3322 8596 0.874175 TGACGACGAGCAACACAAGG 60.874 55.000 0.00 0.00 0.00 3.61
3323 8597 1.557443 GACGACGAGCAACACAAGGG 61.557 60.000 0.00 0.00 0.00 3.95
3324 8598 1.300620 CGACGAGCAACACAAGGGA 60.301 57.895 0.00 0.00 0.00 4.20
3325 8599 0.878523 CGACGAGCAACACAAGGGAA 60.879 55.000 0.00 0.00 0.00 3.97
3326 8600 1.305201 GACGAGCAACACAAGGGAAA 58.695 50.000 0.00 0.00 0.00 3.13
3327 8601 1.880027 GACGAGCAACACAAGGGAAAT 59.120 47.619 0.00 0.00 0.00 2.17
3328 8602 3.071479 GACGAGCAACACAAGGGAAATA 58.929 45.455 0.00 0.00 0.00 1.40
3329 8603 3.686016 ACGAGCAACACAAGGGAAATAT 58.314 40.909 0.00 0.00 0.00 1.28
3330 8604 3.440173 ACGAGCAACACAAGGGAAATATG 59.560 43.478 0.00 0.00 0.00 1.78
3331 8605 3.731867 CGAGCAACACAAGGGAAATATGC 60.732 47.826 0.00 0.00 0.00 3.14
3332 8606 3.164268 AGCAACACAAGGGAAATATGCA 58.836 40.909 0.00 0.00 35.11 3.96
3333 8607 3.194116 AGCAACACAAGGGAAATATGCAG 59.806 43.478 0.00 0.00 35.11 4.41
3334 8608 3.676873 GCAACACAAGGGAAATATGCAGG 60.677 47.826 0.00 0.00 33.00 4.85
3335 8609 3.737559 ACACAAGGGAAATATGCAGGA 57.262 42.857 0.00 0.00 0.00 3.86
3336 8610 3.356290 ACACAAGGGAAATATGCAGGAC 58.644 45.455 0.00 0.00 0.00 3.85
3337 8611 3.010584 ACACAAGGGAAATATGCAGGACT 59.989 43.478 0.00 0.00 0.00 3.85
3338 8612 4.019174 CACAAGGGAAATATGCAGGACTT 58.981 43.478 0.00 0.00 0.00 3.01
3339 8613 4.019174 ACAAGGGAAATATGCAGGACTTG 58.981 43.478 0.00 0.00 39.76 3.16
3348 8622 4.680237 CAGGACTTGCGCCGACCA 62.680 66.667 4.18 0.00 0.00 4.02
3349 8623 3.706373 AGGACTTGCGCCGACCAT 61.706 61.111 4.18 0.00 0.00 3.55
3350 8624 3.499737 GGACTTGCGCCGACCATG 61.500 66.667 4.18 0.00 0.00 3.66
3351 8625 4.166011 GACTTGCGCCGACCATGC 62.166 66.667 4.18 0.00 0.00 4.06
3368 8642 3.047877 CCCTCCGCAAACGACCAC 61.048 66.667 0.00 0.00 43.93 4.16
3369 8643 3.047877 CCTCCGCAAACGACCACC 61.048 66.667 0.00 0.00 43.93 4.61
3370 8644 3.411351 CTCCGCAAACGACCACCG 61.411 66.667 0.00 0.00 43.93 4.94
3371 8645 3.851845 CTCCGCAAACGACCACCGA 62.852 63.158 0.00 0.00 43.93 4.69
3372 8646 2.968156 CCGCAAACGACCACCGAA 60.968 61.111 0.00 0.00 43.93 4.30
3373 8647 2.322081 CCGCAAACGACCACCGAAT 61.322 57.895 0.00 0.00 43.93 3.34
3374 8648 1.154488 CGCAAACGACCACCGAATG 60.154 57.895 0.00 0.00 43.93 2.67
3375 8649 1.442017 GCAAACGACCACCGAATGC 60.442 57.895 0.00 0.00 42.34 3.56
3376 8650 1.852067 GCAAACGACCACCGAATGCT 61.852 55.000 0.00 0.00 43.96 3.79
3377 8651 0.110238 CAAACGACCACCGAATGCTG 60.110 55.000 0.00 0.00 41.76 4.41
3378 8652 0.534203 AAACGACCACCGAATGCTGT 60.534 50.000 0.00 0.00 41.76 4.40
3379 8653 0.949105 AACGACCACCGAATGCTGTC 60.949 55.000 0.00 0.00 41.76 3.51
3380 8654 1.374125 CGACCACCGAATGCTGTCA 60.374 57.895 0.00 0.00 41.76 3.58
3381 8655 0.740868 CGACCACCGAATGCTGTCAT 60.741 55.000 0.00 0.00 41.76 3.06
3382 8656 1.009829 GACCACCGAATGCTGTCATC 58.990 55.000 0.00 0.00 31.27 2.92
3383 8657 0.740868 ACCACCGAATGCTGTCATCG 60.741 55.000 0.00 0.00 31.27 3.84
3384 8658 0.740868 CCACCGAATGCTGTCATCGT 60.741 55.000 0.00 0.00 31.27 3.73
3385 8659 0.647410 CACCGAATGCTGTCATCGTC 59.353 55.000 0.00 0.00 31.27 4.20
3386 8660 0.246360 ACCGAATGCTGTCATCGTCA 59.754 50.000 0.00 0.00 31.27 4.35
3387 8661 0.647410 CCGAATGCTGTCATCGTCAC 59.353 55.000 0.00 0.00 31.27 3.67
3388 8662 1.633561 CGAATGCTGTCATCGTCACT 58.366 50.000 0.00 0.00 31.27 3.41
3389 8663 1.322637 CGAATGCTGTCATCGTCACTG 59.677 52.381 0.00 0.00 31.27 3.66
3390 8664 2.341257 GAATGCTGTCATCGTCACTGT 58.659 47.619 0.00 0.00 31.27 3.55
3391 8665 2.462456 ATGCTGTCATCGTCACTGTT 57.538 45.000 0.00 0.00 0.00 3.16
3392 8666 3.592898 ATGCTGTCATCGTCACTGTTA 57.407 42.857 0.00 0.00 0.00 2.41
3393 8667 2.946564 TGCTGTCATCGTCACTGTTAG 58.053 47.619 0.00 0.00 0.00 2.34
3394 8668 2.556622 TGCTGTCATCGTCACTGTTAGA 59.443 45.455 0.00 0.00 0.00 2.10
3395 8669 3.193479 TGCTGTCATCGTCACTGTTAGAT 59.807 43.478 0.00 0.00 0.00 1.98
3396 8670 3.549471 GCTGTCATCGTCACTGTTAGATG 59.451 47.826 9.36 9.36 41.14 2.90
3397 8671 4.738124 CTGTCATCGTCACTGTTAGATGT 58.262 43.478 13.19 0.00 40.75 3.06
3398 8672 4.485163 TGTCATCGTCACTGTTAGATGTG 58.515 43.478 13.19 0.00 40.75 3.21
3399 8673 4.022329 TGTCATCGTCACTGTTAGATGTGT 60.022 41.667 13.19 0.00 40.75 3.72
3400 8674 5.182380 TGTCATCGTCACTGTTAGATGTGTA 59.818 40.000 13.19 3.50 40.75 2.90
3401 8675 5.512082 GTCATCGTCACTGTTAGATGTGTAC 59.488 44.000 13.19 0.00 40.75 2.90
3402 8676 5.182380 TCATCGTCACTGTTAGATGTGTACA 59.818 40.000 13.19 0.00 40.75 2.90
3403 8677 5.043189 TCGTCACTGTTAGATGTGTACAG 57.957 43.478 0.00 0.00 43.72 2.74
3409 8683 5.407407 CTGTTAGATGTGTACAGTCCCTT 57.593 43.478 0.00 0.00 35.65 3.95
3410 8684 5.794894 CTGTTAGATGTGTACAGTCCCTTT 58.205 41.667 0.00 0.00 35.65 3.11
3411 8685 6.182507 TGTTAGATGTGTACAGTCCCTTTT 57.817 37.500 0.00 0.00 0.00 2.27
3412 8686 6.597562 TGTTAGATGTGTACAGTCCCTTTTT 58.402 36.000 0.00 0.00 0.00 1.94
3413 8687 6.485313 TGTTAGATGTGTACAGTCCCTTTTTG 59.515 38.462 0.00 0.00 0.00 2.44
3414 8688 4.398319 AGATGTGTACAGTCCCTTTTTGG 58.602 43.478 0.00 0.00 0.00 3.28
3415 8689 3.655615 TGTGTACAGTCCCTTTTTGGT 57.344 42.857 0.00 0.00 0.00 3.67
3416 8690 4.774660 TGTGTACAGTCCCTTTTTGGTA 57.225 40.909 0.00 0.00 0.00 3.25
3417 8691 5.313280 TGTGTACAGTCCCTTTTTGGTAT 57.687 39.130 0.00 0.00 0.00 2.73
3418 8692 6.436738 TGTGTACAGTCCCTTTTTGGTATA 57.563 37.500 0.00 0.00 0.00 1.47
3419 8693 7.023171 TGTGTACAGTCCCTTTTTGGTATAT 57.977 36.000 0.00 0.00 0.00 0.86
3420 8694 7.107542 TGTGTACAGTCCCTTTTTGGTATATC 58.892 38.462 0.00 0.00 0.00 1.63
3421 8695 6.541278 GTGTACAGTCCCTTTTTGGTATATCC 59.459 42.308 0.00 0.00 0.00 2.59
3422 8696 6.445786 TGTACAGTCCCTTTTTGGTATATCCT 59.554 38.462 0.00 0.00 37.07 3.24
3423 8697 6.002653 ACAGTCCCTTTTTGGTATATCCTC 57.997 41.667 0.00 0.00 37.07 3.71
3424 8698 5.491078 ACAGTCCCTTTTTGGTATATCCTCA 59.509 40.000 0.00 0.00 37.07 3.86
3425 8699 6.160459 ACAGTCCCTTTTTGGTATATCCTCAT 59.840 38.462 0.00 0.00 37.07 2.90
3426 8700 7.062957 CAGTCCCTTTTTGGTATATCCTCATT 58.937 38.462 0.00 0.00 37.07 2.57
3427 8701 7.013655 CAGTCCCTTTTTGGTATATCCTCATTG 59.986 40.741 0.00 0.00 37.07 2.82
3428 8702 6.833933 GTCCCTTTTTGGTATATCCTCATTGT 59.166 38.462 0.00 0.00 37.07 2.71
3429 8703 7.996644 GTCCCTTTTTGGTATATCCTCATTGTA 59.003 37.037 0.00 0.00 37.07 2.41
3430 8704 8.732854 TCCCTTTTTGGTATATCCTCATTGTAT 58.267 33.333 0.00 0.00 37.07 2.29
3436 8710 7.749377 TGGTATATCCTCATTGTATAAGGGG 57.251 40.000 0.00 0.00 37.07 4.79
3437 8711 7.260891 TGGTATATCCTCATTGTATAAGGGGT 58.739 38.462 0.00 0.00 37.07 4.95
3438 8712 7.742213 TGGTATATCCTCATTGTATAAGGGGTT 59.258 37.037 0.00 0.00 37.07 4.11
3439 8713 8.612145 GGTATATCCTCATTGTATAAGGGGTTT 58.388 37.037 0.00 0.00 0.00 3.27
3440 8714 9.668497 GTATATCCTCATTGTATAAGGGGTTTC 57.332 37.037 0.00 0.00 0.00 2.78
3441 8715 5.382664 TCCTCATTGTATAAGGGGTTTCC 57.617 43.478 0.00 0.00 0.00 3.13
3451 8725 2.287977 AGGGGTTTCCTGCACTTTAC 57.712 50.000 0.00 0.00 46.07 2.01
3452 8726 1.203013 AGGGGTTTCCTGCACTTTACC 60.203 52.381 0.00 0.00 46.07 2.85
3453 8727 1.479757 GGGGTTTCCTGCACTTTACCA 60.480 52.381 0.00 0.00 0.00 3.25
3454 8728 2.312390 GGGTTTCCTGCACTTTACCAA 58.688 47.619 0.00 0.00 0.00 3.67
3455 8729 2.696187 GGGTTTCCTGCACTTTACCAAA 59.304 45.455 0.00 0.00 0.00 3.28
3456 8730 3.491964 GGGTTTCCTGCACTTTACCAAAC 60.492 47.826 0.00 0.00 0.00 2.93
3457 8731 3.131400 GGTTTCCTGCACTTTACCAAACA 59.869 43.478 0.00 0.00 0.00 2.83
3458 8732 4.202212 GGTTTCCTGCACTTTACCAAACAT 60.202 41.667 0.00 0.00 0.00 2.71
3459 8733 4.582701 TTCCTGCACTTTACCAAACATG 57.417 40.909 0.00 0.00 0.00 3.21
3460 8734 3.561143 TCCTGCACTTTACCAAACATGT 58.439 40.909 0.00 0.00 0.00 3.21
3461 8735 4.720046 TCCTGCACTTTACCAAACATGTA 58.280 39.130 0.00 0.00 0.00 2.29
3462 8736 5.321102 TCCTGCACTTTACCAAACATGTAT 58.679 37.500 0.00 0.00 0.00 2.29
3463 8737 6.477253 TCCTGCACTTTACCAAACATGTATA 58.523 36.000 0.00 0.00 0.00 1.47
3464 8738 7.116075 TCCTGCACTTTACCAAACATGTATAT 58.884 34.615 0.00 0.00 0.00 0.86
3465 8739 7.066887 TCCTGCACTTTACCAAACATGTATATG 59.933 37.037 0.00 0.00 40.24 1.78
3467 8741 8.794335 TGCACTTTACCAAACATGTATATGTA 57.206 30.769 5.45 0.00 46.54 2.29
3468 8742 9.232473 TGCACTTTACCAAACATGTATATGTAA 57.768 29.630 5.45 2.61 46.54 2.41
3474 8748 6.899393 CCAAACATGTATATGTAATGGCCT 57.101 37.500 18.27 0.00 46.54 5.19
3475 8749 7.288810 CCAAACATGTATATGTAATGGCCTT 57.711 36.000 18.27 0.00 46.54 4.35
3476 8750 7.725251 CCAAACATGTATATGTAATGGCCTTT 58.275 34.615 18.27 6.72 46.54 3.11
3477 8751 7.652909 CCAAACATGTATATGTAATGGCCTTTG 59.347 37.037 18.27 11.22 46.54 2.77
3478 8752 6.899393 ACATGTATATGTAATGGCCTTTGG 57.101 37.500 13.96 0.00 45.45 3.28
3479 8753 5.243730 ACATGTATATGTAATGGCCTTTGGC 59.756 40.000 13.96 7.35 45.45 4.52
3488 8762 2.436109 GCCTTTGGCCCTCAGTGA 59.564 61.111 0.00 0.00 44.06 3.41
3489 8763 1.228552 GCCTTTGGCCCTCAGTGAA 60.229 57.895 0.00 0.00 44.06 3.18
3490 8764 0.613012 GCCTTTGGCCCTCAGTGAAT 60.613 55.000 0.00 0.00 44.06 2.57
3491 8765 1.340991 GCCTTTGGCCCTCAGTGAATA 60.341 52.381 0.00 0.00 44.06 1.75
3492 8766 2.369394 CCTTTGGCCCTCAGTGAATAC 58.631 52.381 0.00 0.00 0.00 1.89
3493 8767 2.025887 CCTTTGGCCCTCAGTGAATACT 60.026 50.000 0.00 0.00 37.75 2.12
3494 8768 3.199946 CCTTTGGCCCTCAGTGAATACTA 59.800 47.826 0.00 0.00 34.74 1.82
3495 8769 4.446371 CTTTGGCCCTCAGTGAATACTAG 58.554 47.826 0.00 0.00 34.74 2.57
3496 8770 3.116096 TGGCCCTCAGTGAATACTAGT 57.884 47.619 0.00 0.00 34.74 2.57
3497 8771 3.450904 TGGCCCTCAGTGAATACTAGTT 58.549 45.455 0.00 0.00 34.74 2.24
3498 8772 3.197766 TGGCCCTCAGTGAATACTAGTTG 59.802 47.826 0.00 0.00 34.74 3.16
3499 8773 3.198872 GCCCTCAGTGAATACTAGTTGC 58.801 50.000 0.00 0.00 34.74 4.17
3500 8774 3.118592 GCCCTCAGTGAATACTAGTTGCT 60.119 47.826 0.00 0.00 34.74 3.91
3501 8775 4.437239 CCCTCAGTGAATACTAGTTGCTG 58.563 47.826 0.00 3.37 34.74 4.41
3502 8776 4.081420 CCCTCAGTGAATACTAGTTGCTGT 60.081 45.833 0.00 0.00 34.74 4.40
3503 8777 5.482908 CCTCAGTGAATACTAGTTGCTGTT 58.517 41.667 0.00 0.00 34.74 3.16
3504 8778 5.934625 CCTCAGTGAATACTAGTTGCTGTTT 59.065 40.000 0.00 0.00 34.74 2.83
3505 8779 7.097192 CCTCAGTGAATACTAGTTGCTGTTTA 58.903 38.462 0.00 0.00 34.74 2.01
3506 8780 7.766278 CCTCAGTGAATACTAGTTGCTGTTTAT 59.234 37.037 0.00 0.00 34.74 1.40
3507 8781 8.703604 TCAGTGAATACTAGTTGCTGTTTATC 57.296 34.615 0.00 0.00 34.74 1.75
3508 8782 8.531982 TCAGTGAATACTAGTTGCTGTTTATCT 58.468 33.333 0.00 0.00 34.74 1.98
3509 8783 9.803315 CAGTGAATACTAGTTGCTGTTTATCTA 57.197 33.333 0.00 0.00 34.74 1.98
3515 8789 7.849804 ACTAGTTGCTGTTTATCTAACATGG 57.150 36.000 0.00 0.00 45.31 3.66
3516 8790 7.394816 ACTAGTTGCTGTTTATCTAACATGGT 58.605 34.615 0.00 0.00 45.31 3.55
3517 8791 8.537016 ACTAGTTGCTGTTTATCTAACATGGTA 58.463 33.333 0.00 0.00 45.31 3.25
3518 8792 9.547753 CTAGTTGCTGTTTATCTAACATGGTAT 57.452 33.333 0.00 0.00 45.31 2.73
3519 8793 8.438676 AGTTGCTGTTTATCTAACATGGTATC 57.561 34.615 0.00 0.00 45.31 2.24
3520 8794 8.046708 AGTTGCTGTTTATCTAACATGGTATCA 58.953 33.333 0.00 0.00 45.31 2.15
3521 8795 8.338259 GTTGCTGTTTATCTAACATGGTATCAG 58.662 37.037 0.00 0.00 45.31 2.90
3522 8796 7.791029 TGCTGTTTATCTAACATGGTATCAGA 58.209 34.615 0.00 0.00 45.31 3.27
3523 8797 8.432013 TGCTGTTTATCTAACATGGTATCAGAT 58.568 33.333 0.00 0.00 45.31 2.90
3524 8798 8.715998 GCTGTTTATCTAACATGGTATCAGATG 58.284 37.037 4.99 0.00 45.31 2.90
3525 8799 8.607441 TGTTTATCTAACATGGTATCAGATGC 57.393 34.615 4.99 0.00 41.73 3.91
3526 8800 8.432013 TGTTTATCTAACATGGTATCAGATGCT 58.568 33.333 4.99 0.00 41.73 3.79
3527 8801 9.929180 GTTTATCTAACATGGTATCAGATGCTA 57.071 33.333 4.99 0.00 36.71 3.49
3529 8803 6.596309 TCTAACATGGTATCAGATGCTAGG 57.404 41.667 0.00 0.00 0.00 3.02
3530 8804 6.077993 TCTAACATGGTATCAGATGCTAGGT 58.922 40.000 0.00 0.00 0.00 3.08
3531 8805 5.636903 AACATGGTATCAGATGCTAGGTT 57.363 39.130 8.71 8.71 0.00 3.50
3532 8806 6.747414 AACATGGTATCAGATGCTAGGTTA 57.253 37.500 12.11 0.00 29.92 2.85
3533 8807 6.352016 ACATGGTATCAGATGCTAGGTTAG 57.648 41.667 0.00 0.00 0.00 2.34
3543 8817 1.334160 GCTAGGTTAGCCTCTCTCCC 58.666 60.000 0.00 0.00 45.64 4.30
3544 8818 1.611519 CTAGGTTAGCCTCTCTCCCG 58.388 60.000 0.00 0.00 45.64 5.14
3545 8819 0.467659 TAGGTTAGCCTCTCTCCCGC 60.468 60.000 0.00 0.00 45.64 6.13
3546 8820 2.058595 GGTTAGCCTCTCTCCCGCA 61.059 63.158 0.00 0.00 0.00 5.69
3547 8821 1.142097 GTTAGCCTCTCTCCCGCAC 59.858 63.158 0.00 0.00 0.00 5.34
3548 8822 2.415608 TTAGCCTCTCTCCCGCACG 61.416 63.158 0.00 0.00 0.00 5.34
3549 8823 2.831894 TTAGCCTCTCTCCCGCACGA 62.832 60.000 0.00 0.00 0.00 4.35
3550 8824 2.626255 TAGCCTCTCTCCCGCACGAT 62.626 60.000 0.00 0.00 0.00 3.73
3551 8825 2.415010 CCTCTCTCCCGCACGATG 59.585 66.667 0.00 0.00 0.00 3.84
3552 8826 2.279120 CTCTCTCCCGCACGATGC 60.279 66.667 0.00 0.00 40.69 3.91
3553 8827 3.068064 TCTCTCCCGCACGATGCA 61.068 61.111 9.95 0.00 45.36 3.96
3554 8828 2.125552 CTCTCCCGCACGATGCAA 60.126 61.111 9.95 0.00 45.36 4.08
3555 8829 2.434185 TCTCCCGCACGATGCAAC 60.434 61.111 9.95 0.00 45.36 4.17
3556 8830 2.434884 CTCCCGCACGATGCAACT 60.435 61.111 9.95 0.00 45.36 3.16
3557 8831 2.434185 TCCCGCACGATGCAACTC 60.434 61.111 9.95 0.00 45.36 3.01
3558 8832 3.499737 CCCGCACGATGCAACTCC 61.500 66.667 9.95 0.00 45.36 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.251268 AGTCGATTAAGTGTAAGGGCAAC 58.749 43.478 0.00 0.00 0.00 4.17
1 2 4.546829 AGTCGATTAAGTGTAAGGGCAA 57.453 40.909 0.00 0.00 0.00 4.52
2 3 4.020928 TCAAGTCGATTAAGTGTAAGGGCA 60.021 41.667 0.00 0.00 0.00 5.36
3 4 4.501071 TCAAGTCGATTAAGTGTAAGGGC 58.499 43.478 0.00 0.00 0.00 5.19
4 5 5.109903 CCTCAAGTCGATTAAGTGTAAGGG 58.890 45.833 0.00 0.00 0.00 3.95
5 6 5.109903 CCCTCAAGTCGATTAAGTGTAAGG 58.890 45.833 0.00 0.00 0.00 2.69
6 7 5.109903 CCCCTCAAGTCGATTAAGTGTAAG 58.890 45.833 0.00 0.00 0.00 2.34
7 8 4.081309 CCCCCTCAAGTCGATTAAGTGTAA 60.081 45.833 0.00 0.00 0.00 2.41
8 9 3.449737 CCCCCTCAAGTCGATTAAGTGTA 59.550 47.826 0.00 0.00 0.00 2.90
9 10 2.236395 CCCCCTCAAGTCGATTAAGTGT 59.764 50.000 0.00 0.00 0.00 3.55
10 11 2.236395 ACCCCCTCAAGTCGATTAAGTG 59.764 50.000 0.00 0.00 0.00 3.16
11 12 2.547990 ACCCCCTCAAGTCGATTAAGT 58.452 47.619 0.00 0.00 0.00 2.24
12 13 3.629142 AACCCCCTCAAGTCGATTAAG 57.371 47.619 0.00 0.00 0.00 1.85
13 14 3.839490 TGTAACCCCCTCAAGTCGATTAA 59.161 43.478 0.00 0.00 0.00 1.40
14 15 3.443052 TGTAACCCCCTCAAGTCGATTA 58.557 45.455 0.00 0.00 0.00 1.75
15 16 2.262637 TGTAACCCCCTCAAGTCGATT 58.737 47.619 0.00 0.00 0.00 3.34
16 17 1.946984 TGTAACCCCCTCAAGTCGAT 58.053 50.000 0.00 0.00 0.00 3.59
17 18 1.946984 ATGTAACCCCCTCAAGTCGA 58.053 50.000 0.00 0.00 0.00 4.20
18 19 4.417426 AATATGTAACCCCCTCAAGTCG 57.583 45.455 0.00 0.00 0.00 4.18
19 20 6.541278 GTGTAAATATGTAACCCCCTCAAGTC 59.459 42.308 0.00 0.00 0.00 3.01
20 21 6.216868 AGTGTAAATATGTAACCCCCTCAAGT 59.783 38.462 0.00 0.00 0.00 3.16
21 22 6.659824 AGTGTAAATATGTAACCCCCTCAAG 58.340 40.000 0.00 0.00 0.00 3.02
22 23 6.645884 AGTGTAAATATGTAACCCCCTCAA 57.354 37.500 0.00 0.00 0.00 3.02
23 24 6.419791 CAAGTGTAAATATGTAACCCCCTCA 58.580 40.000 0.00 0.00 0.00 3.86
24 25 5.826208 CCAAGTGTAAATATGTAACCCCCTC 59.174 44.000 0.00 0.00 0.00 4.30
25 26 5.254501 ACCAAGTGTAAATATGTAACCCCCT 59.745 40.000 0.00 0.00 0.00 4.79
26 27 5.512298 ACCAAGTGTAAATATGTAACCCCC 58.488 41.667 0.00 0.00 0.00 5.40
27 28 6.543465 GGTACCAAGTGTAAATATGTAACCCC 59.457 42.308 7.15 0.00 0.00 4.95
28 29 7.558161 GGTACCAAGTGTAAATATGTAACCC 57.442 40.000 7.15 0.00 0.00 4.11
48 49 8.101419 TCTCTTTCCTTTCTGAAATAAGGGTAC 58.899 37.037 2.88 0.00 41.05 3.34
49 50 8.214721 TCTCTTTCCTTTCTGAAATAAGGGTA 57.785 34.615 2.88 0.00 41.05 3.69
59 60 5.604650 AGAGGTCTTTCTCTTTCCTTTCTGA 59.395 40.000 0.00 0.00 40.93 3.27
60 61 5.700373 CAGAGGTCTTTCTCTTTCCTTTCTG 59.300 44.000 0.00 0.00 41.76 3.02
61 62 5.744594 GCAGAGGTCTTTCTCTTTCCTTTCT 60.745 44.000 0.00 0.00 41.76 2.52
106 110 9.841295 GGACCTGGTGTATAGTTCATAAAATTA 57.159 33.333 2.82 0.00 0.00 1.40
110 114 6.877668 TGGACCTGGTGTATAGTTCATAAA 57.122 37.500 2.82 0.00 0.00 1.40
122 132 1.550130 CCGGTGTATGGACCTGGTGT 61.550 60.000 2.82 0.00 33.35 4.16
144 154 0.337773 AGGAGGAGATGGCAGAGTCA 59.662 55.000 0.00 0.00 0.00 3.41
154 164 0.398381 GTCTGGCTGGAGGAGGAGAT 60.398 60.000 0.00 0.00 0.00 2.75
155 165 1.000993 GTCTGGCTGGAGGAGGAGA 59.999 63.158 0.00 0.00 0.00 3.71
156 166 1.305633 TGTCTGGCTGGAGGAGGAG 60.306 63.158 0.00 0.00 0.00 3.69
157 167 1.610673 GTGTCTGGCTGGAGGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
158 168 1.915266 TGTGTCTGGCTGGAGGAGG 60.915 63.158 0.00 0.00 0.00 4.30
208 218 3.112075 CCGCTGTACTGGTGTGCG 61.112 66.667 1.65 0.00 45.22 5.34
209 219 3.423154 GCCGCTGTACTGGTGTGC 61.423 66.667 1.65 1.20 0.00 4.57
238 248 3.831911 TGGGCTTGTTTCAAATAAGGAGG 59.168 43.478 8.55 0.00 31.12 4.30
296 306 7.569599 TGAGAAGTTTCTAGGGGTCTATTTT 57.430 36.000 0.00 0.00 37.73 1.82
297 307 7.625682 AGATGAGAAGTTTCTAGGGGTCTATTT 59.374 37.037 0.00 0.00 37.73 1.40
335 345 6.183361 TGGGTTTCTATCTAAATCTGCTCTCC 60.183 42.308 0.00 0.00 0.00 3.71
336 346 6.821388 TGGGTTTCTATCTAAATCTGCTCTC 58.179 40.000 0.00 0.00 0.00 3.20
594 607 0.749454 GAATCCTGCACGCCAATCCT 60.749 55.000 0.00 0.00 0.00 3.24
806 821 6.423905 TCTGGTCAGAATCTGTAAAAACTTCG 59.576 38.462 10.36 0.00 33.91 3.79
899 1947 4.287766 ACAAATTCCTGGTACACTCCTC 57.712 45.455 0.00 0.00 0.00 3.71
954 2095 4.024556 CAGATCAGCAACAACGAAAGAACT 60.025 41.667 0.00 0.00 0.00 3.01
955 2096 4.214437 CAGATCAGCAACAACGAAAGAAC 58.786 43.478 0.00 0.00 0.00 3.01
956 2097 3.303990 GCAGATCAGCAACAACGAAAGAA 60.304 43.478 5.05 0.00 0.00 2.52
957 2098 2.224079 GCAGATCAGCAACAACGAAAGA 59.776 45.455 5.05 0.00 0.00 2.52
958 2099 2.225019 AGCAGATCAGCAACAACGAAAG 59.775 45.455 13.03 0.00 36.85 2.62
959 2100 2.221169 AGCAGATCAGCAACAACGAAA 58.779 42.857 13.03 0.00 36.85 3.46
960 2101 1.882912 AGCAGATCAGCAACAACGAA 58.117 45.000 13.03 0.00 36.85 3.85
961 2102 2.288763 TGTAGCAGATCAGCAACAACGA 60.289 45.455 13.03 0.00 36.85 3.85
1183 2324 2.045536 CCTCCTCTTGGGTGCAGC 60.046 66.667 7.55 7.55 36.25 5.25
1366 2515 8.879342 AAGCTAGATCATACTGTTGTGAATAC 57.121 34.615 0.00 0.00 0.00 1.89
1563 3727 8.665685 GTGTCGTTCCAAAATATGAGAGTTTAT 58.334 33.333 0.00 0.00 0.00 1.40
1734 3901 8.553459 ACAGAACAAACTGGAGTATAATTCTG 57.447 34.615 15.00 15.00 43.83 3.02
1807 4233 8.713971 TGAAAGAGAGCATCCAGGTTATAATAA 58.286 33.333 0.00 0.00 33.66 1.40
1808 4234 8.262601 TGAAAGAGAGCATCCAGGTTATAATA 57.737 34.615 0.00 0.00 33.66 0.98
1809 4235 7.141758 TGAAAGAGAGCATCCAGGTTATAAT 57.858 36.000 0.00 0.00 33.66 1.28
1918 4440 3.529533 CATACTCAAGGGAAGCAGTGAG 58.470 50.000 0.00 0.00 42.60 3.51
1950 4548 7.555554 AGCTAACTATTTCAGAGATGTTGCATT 59.444 33.333 0.00 0.00 0.00 3.56
2016 7125 5.053145 GTCTACAAGCAGATATCAACCCTG 58.947 45.833 5.32 0.00 0.00 4.45
2128 7263 1.155042 CTCAACAGCCTGCAGAGAAC 58.845 55.000 17.39 1.25 0.00 3.01
2129 7264 1.001746 CTCTCAACAGCCTGCAGAGAA 59.998 52.381 17.39 3.42 32.63 2.87
2240 7375 2.213499 GTGCTTCCATGAATACCCTCG 58.787 52.381 0.00 0.00 0.00 4.63
2293 7428 3.491964 GGTGGTTTCAACAACTTTAGCCC 60.492 47.826 0.00 0.00 33.27 5.19
2394 7529 2.030027 TCTCCACTTGGTCTGGATGT 57.970 50.000 0.00 0.00 37.18 3.06
2416 7551 0.037326 CAGTTGCTTCTCCACGCCTA 60.037 55.000 0.00 0.00 0.00 3.93
2417 7552 1.302033 CAGTTGCTTCTCCACGCCT 60.302 57.895 0.00 0.00 0.00 5.52
2419 7554 2.970974 GCCAGTTGCTTCTCCACGC 61.971 63.158 0.00 0.00 36.87 5.34
2440 7575 3.309961 TCTCAATCGCATCTATGGAGC 57.690 47.619 0.00 0.00 0.00 4.70
2448 7583 3.461061 TCACCATCTTCTCAATCGCATC 58.539 45.455 0.00 0.00 0.00 3.91
2450 7585 2.897436 CTCACCATCTTCTCAATCGCA 58.103 47.619 0.00 0.00 0.00 5.10
2452 7587 2.208431 GGCTCACCATCTTCTCAATCG 58.792 52.381 0.00 0.00 35.26 3.34
2480 7615 0.807667 CCTCGGGATCAGTTCGCTTG 60.808 60.000 0.00 0.00 35.21 4.01
2599 7737 0.247460 CAGAGAACCGAGCACCATGA 59.753 55.000 0.00 0.00 0.00 3.07
2952 8226 2.948979 TGGCAGCAATATAAAGTTCCGG 59.051 45.455 0.00 0.00 0.00 5.14
3009 8283 7.067251 ACAATTCCAAGTGCATTGACAATTTTT 59.933 29.630 0.00 0.00 41.83 1.94
3010 8284 6.543100 ACAATTCCAAGTGCATTGACAATTTT 59.457 30.769 0.00 5.45 41.83 1.82
3011 8285 6.056884 ACAATTCCAAGTGCATTGACAATTT 58.943 32.000 0.00 0.00 41.83 1.82
3012 8286 5.613329 ACAATTCCAAGTGCATTGACAATT 58.387 33.333 0.00 9.78 41.83 2.32
3013 8287 5.217978 ACAATTCCAAGTGCATTGACAAT 57.782 34.783 9.56 0.00 41.83 2.71
3014 8288 4.669206 ACAATTCCAAGTGCATTGACAA 57.331 36.364 9.56 0.00 41.83 3.18
3015 8289 4.669206 AACAATTCCAAGTGCATTGACA 57.331 36.364 9.56 0.00 41.83 3.58
3016 8290 6.033831 CGAATAACAATTCCAAGTGCATTGAC 59.966 38.462 9.56 0.00 41.83 3.18
3017 8291 6.092092 CGAATAACAATTCCAAGTGCATTGA 58.908 36.000 9.56 0.00 41.83 2.57
3018 8292 5.863397 ACGAATAACAATTCCAAGTGCATTG 59.137 36.000 0.00 0.00 38.74 2.82
3019 8293 5.863397 CACGAATAACAATTCCAAGTGCATT 59.137 36.000 0.00 0.00 0.00 3.56
3020 8294 5.401550 CACGAATAACAATTCCAAGTGCAT 58.598 37.500 0.00 0.00 0.00 3.96
3062 8336 3.119173 TGCTCTTGTTGTTGGTTTCTTGG 60.119 43.478 0.00 0.00 0.00 3.61
3096 8370 3.619233 GCAAGTCTTTTGCCTCGTTTA 57.381 42.857 0.54 0.00 39.38 2.01
3133 8407 3.660501 AACCGGGCAATTCTTTTCTTC 57.339 42.857 6.32 0.00 0.00 2.87
3134 8408 4.587262 AGTTAACCGGGCAATTCTTTTCTT 59.413 37.500 6.32 0.00 0.00 2.52
3135 8409 4.022329 CAGTTAACCGGGCAATTCTTTTCT 60.022 41.667 6.32 0.00 0.00 2.52
3137 8411 3.892588 TCAGTTAACCGGGCAATTCTTTT 59.107 39.130 6.32 0.00 0.00 2.27
3138 8412 3.254903 GTCAGTTAACCGGGCAATTCTTT 59.745 43.478 6.32 0.00 0.00 2.52
3139 8413 2.817844 GTCAGTTAACCGGGCAATTCTT 59.182 45.455 6.32 0.00 0.00 2.52
3140 8414 2.433436 GTCAGTTAACCGGGCAATTCT 58.567 47.619 6.32 0.00 0.00 2.40
3141 8415 1.129811 CGTCAGTTAACCGGGCAATTC 59.870 52.381 6.32 0.00 0.00 2.17
3142 8416 1.161843 CGTCAGTTAACCGGGCAATT 58.838 50.000 6.32 0.00 0.00 2.32
3143 8417 0.322322 TCGTCAGTTAACCGGGCAAT 59.678 50.000 6.32 0.00 0.00 3.56
3144 8418 0.106335 TTCGTCAGTTAACCGGGCAA 59.894 50.000 6.32 0.00 0.00 4.52
3145 8419 0.106335 TTTCGTCAGTTAACCGGGCA 59.894 50.000 6.32 0.00 0.00 5.36
3146 8420 1.228533 TTTTCGTCAGTTAACCGGGC 58.771 50.000 6.32 0.00 0.00 6.13
3147 8421 2.031769 GGTTTTTCGTCAGTTAACCGGG 60.032 50.000 6.32 0.00 0.00 5.73
3156 8430 4.209112 GTTTTAGCTCGGTTTTTCGTCAG 58.791 43.478 0.00 0.00 0.00 3.51
3169 8443 5.379827 GTTGTGTTGTATCGGTTTTAGCTC 58.620 41.667 0.00 0.00 0.00 4.09
3170 8444 4.214758 GGTTGTGTTGTATCGGTTTTAGCT 59.785 41.667 0.00 0.00 0.00 3.32
3229 8503 0.798776 GTGGCTTCTGTTCCATGTCG 59.201 55.000 0.00 0.00 34.47 4.35
3230 8504 1.896220 TGTGGCTTCTGTTCCATGTC 58.104 50.000 0.00 0.00 34.47 3.06
3231 8505 2.233271 CTTGTGGCTTCTGTTCCATGT 58.767 47.619 0.00 0.00 34.47 3.21
3232 8506 1.542915 CCTTGTGGCTTCTGTTCCATG 59.457 52.381 0.00 0.00 34.47 3.66
3233 8507 1.548582 CCCTTGTGGCTTCTGTTCCAT 60.549 52.381 0.00 0.00 34.47 3.41
3234 8508 0.178992 CCCTTGTGGCTTCTGTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
3235 8509 2.646121 CCCTTGTGGCTTCTGTTCC 58.354 57.895 0.00 0.00 0.00 3.62
3253 8527 4.500396 CCATCCGTTGGCATTTGC 57.500 55.556 0.00 0.00 39.09 3.68
3261 8535 4.101790 GCGTGTGGCCATCCGTTG 62.102 66.667 22.85 7.28 34.80 4.10
3266 8540 4.465512 CTTGCGCGTGTGGCCATC 62.466 66.667 9.72 4.56 38.94 3.51
3271 8545 4.980903 GGTTGCTTGCGCGTGTGG 62.981 66.667 8.43 0.00 39.65 4.17
3276 8550 4.724697 CTGTCGGTTGCTTGCGCG 62.725 66.667 0.00 0.00 39.65 6.86
3278 8552 3.300667 GAGCTGTCGGTTGCTTGCG 62.301 63.158 0.00 0.00 39.91 4.85
3279 8553 2.558313 GAGCTGTCGGTTGCTTGC 59.442 61.111 0.00 0.00 39.91 4.01
3280 8554 2.671177 CGGAGCTGTCGGTTGCTTG 61.671 63.158 0.00 0.00 39.91 4.01
3281 8555 2.357517 CGGAGCTGTCGGTTGCTT 60.358 61.111 0.00 0.00 39.91 3.91
3282 8556 3.303135 TCGGAGCTGTCGGTTGCT 61.303 61.111 0.00 0.00 42.82 3.91
3283 8557 3.112709 GTCGGAGCTGTCGGTTGC 61.113 66.667 0.00 0.00 0.00 4.17
3284 8558 0.600255 AAAGTCGGAGCTGTCGGTTG 60.600 55.000 0.00 0.00 0.00 3.77
3285 8559 0.600255 CAAAGTCGGAGCTGTCGGTT 60.600 55.000 0.00 0.00 0.00 4.44
3286 8560 1.006102 CAAAGTCGGAGCTGTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
3287 8561 1.009389 GTCAAAGTCGGAGCTGTCGG 61.009 60.000 0.00 0.00 0.00 4.79
3288 8562 1.337817 CGTCAAAGTCGGAGCTGTCG 61.338 60.000 0.00 0.00 0.00 4.35
3289 8563 0.039437 TCGTCAAAGTCGGAGCTGTC 60.039 55.000 0.00 0.00 0.00 3.51
3290 8564 0.318784 GTCGTCAAAGTCGGAGCTGT 60.319 55.000 0.00 0.00 0.00 4.40
3291 8565 1.337817 CGTCGTCAAAGTCGGAGCTG 61.338 60.000 0.00 0.00 0.00 4.24
3292 8566 1.081376 CGTCGTCAAAGTCGGAGCT 60.081 57.895 0.00 0.00 0.00 4.09
3293 8567 1.066114 CTCGTCGTCAAAGTCGGAGC 61.066 60.000 0.00 0.00 0.00 4.70
3294 8568 1.066114 GCTCGTCGTCAAAGTCGGAG 61.066 60.000 0.00 0.00 0.00 4.63
3295 8569 1.081641 GCTCGTCGTCAAAGTCGGA 60.082 57.895 0.00 0.00 0.00 4.55
3296 8570 0.937699 TTGCTCGTCGTCAAAGTCGG 60.938 55.000 0.00 0.00 0.00 4.79
3297 8571 0.158928 GTTGCTCGTCGTCAAAGTCG 59.841 55.000 4.73 0.00 0.00 4.18
3298 8572 1.071436 GTGTTGCTCGTCGTCAAAGTC 60.071 52.381 4.73 0.00 0.00 3.01
3299 8573 0.928229 GTGTTGCTCGTCGTCAAAGT 59.072 50.000 4.73 0.00 0.00 2.66
3300 8574 0.927537 TGTGTTGCTCGTCGTCAAAG 59.072 50.000 4.73 0.00 0.00 2.77
3301 8575 1.326245 CTTGTGTTGCTCGTCGTCAAA 59.674 47.619 4.73 0.00 0.00 2.69
3302 8576 0.927537 CTTGTGTTGCTCGTCGTCAA 59.072 50.000 0.00 0.00 0.00 3.18
3303 8577 0.874175 CCTTGTGTTGCTCGTCGTCA 60.874 55.000 0.00 0.00 0.00 4.35
3304 8578 1.557443 CCCTTGTGTTGCTCGTCGTC 61.557 60.000 0.00 0.00 0.00 4.20
3305 8579 1.594293 CCCTTGTGTTGCTCGTCGT 60.594 57.895 0.00 0.00 0.00 4.34
3306 8580 0.878523 TTCCCTTGTGTTGCTCGTCG 60.879 55.000 0.00 0.00 0.00 5.12
3307 8581 1.305201 TTTCCCTTGTGTTGCTCGTC 58.695 50.000 0.00 0.00 0.00 4.20
3308 8582 1.981256 ATTTCCCTTGTGTTGCTCGT 58.019 45.000 0.00 0.00 0.00 4.18
3309 8583 3.731867 GCATATTTCCCTTGTGTTGCTCG 60.732 47.826 0.00 0.00 0.00 5.03
3310 8584 3.193267 TGCATATTTCCCTTGTGTTGCTC 59.807 43.478 0.00 0.00 0.00 4.26
3311 8585 3.164268 TGCATATTTCCCTTGTGTTGCT 58.836 40.909 0.00 0.00 0.00 3.91
3312 8586 3.514645 CTGCATATTTCCCTTGTGTTGC 58.485 45.455 0.00 0.00 0.00 4.17
3313 8587 3.763360 TCCTGCATATTTCCCTTGTGTTG 59.237 43.478 0.00 0.00 0.00 3.33
3314 8588 3.763897 GTCCTGCATATTTCCCTTGTGTT 59.236 43.478 0.00 0.00 0.00 3.32
3315 8589 3.010584 AGTCCTGCATATTTCCCTTGTGT 59.989 43.478 0.00 0.00 0.00 3.72
3316 8590 3.624777 AGTCCTGCATATTTCCCTTGTG 58.375 45.455 0.00 0.00 0.00 3.33
3317 8591 4.019174 CAAGTCCTGCATATTTCCCTTGT 58.981 43.478 0.00 0.00 0.00 3.16
3318 8592 4.644103 CAAGTCCTGCATATTTCCCTTG 57.356 45.455 0.00 0.00 0.00 3.61
3331 8605 3.958147 ATGGTCGGCGCAAGTCCTG 62.958 63.158 10.83 0.00 40.39 3.86
3332 8606 3.706373 ATGGTCGGCGCAAGTCCT 61.706 61.111 10.83 0.00 40.39 3.85
3333 8607 3.499737 CATGGTCGGCGCAAGTCC 61.500 66.667 10.83 10.59 40.39 3.85
3334 8608 4.166011 GCATGGTCGGCGCAAGTC 62.166 66.667 10.83 0.00 41.68 3.01
3351 8625 3.047877 GTGGTCGTTTGCGGAGGG 61.048 66.667 0.00 0.00 38.89 4.30
3352 8626 3.047877 GGTGGTCGTTTGCGGAGG 61.048 66.667 0.00 0.00 38.89 4.30
3353 8627 3.411351 CGGTGGTCGTTTGCGGAG 61.411 66.667 0.00 0.00 38.89 4.63
3354 8628 2.718747 ATTCGGTGGTCGTTTGCGGA 62.719 55.000 0.00 0.00 40.32 5.54
3355 8629 2.322081 ATTCGGTGGTCGTTTGCGG 61.322 57.895 0.00 0.00 40.32 5.69
3356 8630 1.154488 CATTCGGTGGTCGTTTGCG 60.154 57.895 0.00 0.00 40.32 4.85
3357 8631 1.442017 GCATTCGGTGGTCGTTTGC 60.442 57.895 0.00 0.00 39.22 3.68
3358 8632 0.110238 CAGCATTCGGTGGTCGTTTG 60.110 55.000 0.00 0.00 36.12 2.93
3359 8633 0.534203 ACAGCATTCGGTGGTCGTTT 60.534 50.000 0.00 0.00 45.16 3.60
3360 8634 0.949105 GACAGCATTCGGTGGTCGTT 60.949 55.000 0.00 0.00 45.16 3.85
3361 8635 1.374252 GACAGCATTCGGTGGTCGT 60.374 57.895 0.00 0.00 45.16 4.34
3362 8636 0.740868 ATGACAGCATTCGGTGGTCG 60.741 55.000 0.00 0.00 45.16 4.79
3363 8637 1.009829 GATGACAGCATTCGGTGGTC 58.990 55.000 0.00 0.00 45.16 4.02
3364 8638 0.740868 CGATGACAGCATTCGGTGGT 60.741 55.000 0.00 0.00 45.16 4.16
3365 8639 0.740868 ACGATGACAGCATTCGGTGG 60.741 55.000 0.00 0.00 45.16 4.61
3366 8640 0.647410 GACGATGACAGCATTCGGTG 59.353 55.000 0.00 0.00 46.34 4.94
3367 8641 0.246360 TGACGATGACAGCATTCGGT 59.754 50.000 0.00 0.00 34.11 4.69
3368 8642 0.647410 GTGACGATGACAGCATTCGG 59.353 55.000 0.00 0.00 34.11 4.30
3369 8643 1.322637 CAGTGACGATGACAGCATTCG 59.677 52.381 0.00 0.00 34.11 3.34
3370 8644 2.341257 ACAGTGACGATGACAGCATTC 58.659 47.619 0.00 0.00 34.11 2.67
3371 8645 2.462456 ACAGTGACGATGACAGCATT 57.538 45.000 0.00 0.00 34.11 3.56
3372 8646 2.462456 AACAGTGACGATGACAGCAT 57.538 45.000 0.00 0.00 37.47 3.79
3373 8647 2.556622 TCTAACAGTGACGATGACAGCA 59.443 45.455 0.00 0.00 0.00 4.41
3374 8648 3.217599 TCTAACAGTGACGATGACAGC 57.782 47.619 0.00 0.00 0.00 4.40
3375 8649 4.560427 CACATCTAACAGTGACGATGACAG 59.440 45.833 19.93 10.49 37.97 3.51
3376 8650 4.022329 ACACATCTAACAGTGACGATGACA 60.022 41.667 19.93 0.00 39.03 3.58
3377 8651 4.486090 ACACATCTAACAGTGACGATGAC 58.514 43.478 19.93 0.00 39.03 3.06
3378 8652 4.783764 ACACATCTAACAGTGACGATGA 57.216 40.909 19.93 4.21 39.03 2.92
3379 8653 5.399013 TGTACACATCTAACAGTGACGATG 58.601 41.667 14.79 14.79 39.03 3.84
3380 8654 5.638596 TGTACACATCTAACAGTGACGAT 57.361 39.130 0.00 0.00 39.03 3.73
3381 8655 5.043189 CTGTACACATCTAACAGTGACGA 57.957 43.478 0.00 0.00 39.03 4.20
3387 8661 5.407407 AAGGGACTGTACACATCTAACAG 57.593 43.478 0.00 0.37 44.89 3.16
3388 8662 5.818678 AAAGGGACTGTACACATCTAACA 57.181 39.130 0.00 0.00 40.86 2.41
3389 8663 6.072673 CCAAAAAGGGACTGTACACATCTAAC 60.073 42.308 0.00 0.00 40.86 2.34
3390 8664 6.001460 CCAAAAAGGGACTGTACACATCTAA 58.999 40.000 0.00 0.00 40.86 2.10
3391 8665 5.072600 ACCAAAAAGGGACTGTACACATCTA 59.927 40.000 0.00 0.00 43.89 1.98
3392 8666 4.141251 ACCAAAAAGGGACTGTACACATCT 60.141 41.667 0.00 0.00 43.89 2.90
3393 8667 4.142038 ACCAAAAAGGGACTGTACACATC 58.858 43.478 0.00 0.00 43.89 3.06
3394 8668 4.178956 ACCAAAAAGGGACTGTACACAT 57.821 40.909 0.00 0.00 43.89 3.21
3395 8669 3.655615 ACCAAAAAGGGACTGTACACA 57.344 42.857 0.00 0.00 43.89 3.72
3396 8670 6.541278 GGATATACCAAAAAGGGACTGTACAC 59.459 42.308 0.00 0.00 43.89 2.90
3397 8671 6.445786 AGGATATACCAAAAAGGGACTGTACA 59.554 38.462 0.00 0.00 43.89 2.90
3398 8672 6.896883 AGGATATACCAAAAAGGGACTGTAC 58.103 40.000 0.00 0.00 43.89 2.90
3399 8673 6.674861 TGAGGATATACCAAAAAGGGACTGTA 59.325 38.462 0.00 0.00 43.89 2.74
3400 8674 5.491078 TGAGGATATACCAAAAAGGGACTGT 59.509 40.000 0.00 0.00 43.89 3.55
3401 8675 6.001449 TGAGGATATACCAAAAAGGGACTG 57.999 41.667 0.00 0.00 43.89 3.51
3402 8676 6.848562 ATGAGGATATACCAAAAAGGGACT 57.151 37.500 0.00 0.00 43.89 3.85
3403 8677 6.833933 ACAATGAGGATATACCAAAAAGGGAC 59.166 38.462 0.00 0.00 43.89 4.46
3404 8678 6.980577 ACAATGAGGATATACCAAAAAGGGA 58.019 36.000 0.00 0.00 43.89 4.20
3405 8679 8.940397 ATACAATGAGGATATACCAAAAAGGG 57.060 34.615 0.00 0.00 43.89 3.95
3410 8684 8.611257 CCCCTTATACAATGAGGATATACCAAA 58.389 37.037 0.00 0.00 38.24 3.28
3411 8685 7.742213 ACCCCTTATACAATGAGGATATACCAA 59.258 37.037 0.00 0.00 38.24 3.67
3412 8686 7.260891 ACCCCTTATACAATGAGGATATACCA 58.739 38.462 0.00 0.00 38.24 3.25
3413 8687 7.750947 ACCCCTTATACAATGAGGATATACC 57.249 40.000 0.00 0.00 38.24 2.73
3414 8688 9.668497 GAAACCCCTTATACAATGAGGATATAC 57.332 37.037 0.00 0.00 38.24 1.47
3415 8689 8.832735 GGAAACCCCTTATACAATGAGGATATA 58.167 37.037 0.00 0.00 38.24 0.86
3416 8690 7.521115 AGGAAACCCCTTATACAATGAGGATAT 59.479 37.037 0.00 0.00 44.85 1.63
3417 8691 6.855061 AGGAAACCCCTTATACAATGAGGATA 59.145 38.462 0.00 0.00 44.85 2.59
3418 8692 5.676811 AGGAAACCCCTTATACAATGAGGAT 59.323 40.000 0.00 0.00 44.85 3.24
3419 8693 5.043762 AGGAAACCCCTTATACAATGAGGA 58.956 41.667 0.00 0.00 44.85 3.71
3420 8694 5.133221 CAGGAAACCCCTTATACAATGAGG 58.867 45.833 0.00 0.00 44.85 3.86
3421 8695 4.580580 GCAGGAAACCCCTTATACAATGAG 59.419 45.833 0.00 0.00 44.85 2.90
3422 8696 4.017958 TGCAGGAAACCCCTTATACAATGA 60.018 41.667 0.00 0.00 44.85 2.57
3423 8697 4.097892 GTGCAGGAAACCCCTTATACAATG 59.902 45.833 0.00 0.00 44.85 2.82
3424 8698 4.017499 AGTGCAGGAAACCCCTTATACAAT 60.017 41.667 0.00 0.00 44.85 2.71
3425 8699 3.332485 AGTGCAGGAAACCCCTTATACAA 59.668 43.478 0.00 0.00 44.85 2.41
3426 8700 2.916934 AGTGCAGGAAACCCCTTATACA 59.083 45.455 0.00 0.00 44.85 2.29
3427 8701 3.646736 AGTGCAGGAAACCCCTTATAC 57.353 47.619 0.00 0.00 44.85 1.47
3428 8702 4.668138 AAAGTGCAGGAAACCCCTTATA 57.332 40.909 0.00 0.00 44.85 0.98
3429 8703 3.542969 AAAGTGCAGGAAACCCCTTAT 57.457 42.857 0.00 0.00 44.85 1.73
3430 8704 3.499021 GGTAAAGTGCAGGAAACCCCTTA 60.499 47.826 0.00 0.00 44.85 2.69
3431 8705 2.594131 GTAAAGTGCAGGAAACCCCTT 58.406 47.619 0.00 0.00 44.85 3.95
3433 8707 1.254026 GGTAAAGTGCAGGAAACCCC 58.746 55.000 0.00 0.00 0.00 4.95
3434 8708 1.989706 TGGTAAAGTGCAGGAAACCC 58.010 50.000 5.93 0.00 0.00 4.11
3435 8709 3.131400 TGTTTGGTAAAGTGCAGGAAACC 59.869 43.478 0.00 0.00 0.00 3.27
3436 8710 4.379339 TGTTTGGTAAAGTGCAGGAAAC 57.621 40.909 0.00 0.00 0.00 2.78
3437 8711 4.404073 ACATGTTTGGTAAAGTGCAGGAAA 59.596 37.500 0.00 0.00 0.00 3.13
3438 8712 3.957497 ACATGTTTGGTAAAGTGCAGGAA 59.043 39.130 0.00 0.00 0.00 3.36
3439 8713 3.561143 ACATGTTTGGTAAAGTGCAGGA 58.439 40.909 0.00 0.00 0.00 3.86
3440 8714 5.643379 ATACATGTTTGGTAAAGTGCAGG 57.357 39.130 2.30 0.00 0.00 4.85
3441 8715 7.761409 ACATATACATGTTTGGTAAAGTGCAG 58.239 34.615 2.30 0.00 42.98 4.41
3442 8716 7.695480 ACATATACATGTTTGGTAAAGTGCA 57.305 32.000 2.30 0.00 42.98 4.57
3446 8720 9.677567 GCCATTACATATACATGTTTGGTAAAG 57.322 33.333 2.30 7.18 42.98 1.85
3447 8721 8.634444 GGCCATTACATATACATGTTTGGTAAA 58.366 33.333 2.30 0.00 42.98 2.01
3448 8722 8.001875 AGGCCATTACATATACATGTTTGGTAA 58.998 33.333 5.01 10.21 42.98 2.85
3449 8723 7.522542 AGGCCATTACATATACATGTTTGGTA 58.477 34.615 5.01 1.24 42.98 3.25
3450 8724 6.372931 AGGCCATTACATATACATGTTTGGT 58.627 36.000 5.01 2.23 42.98 3.67
3451 8725 6.899393 AGGCCATTACATATACATGTTTGG 57.101 37.500 5.01 10.11 42.98 3.28
3452 8726 7.652909 CCAAAGGCCATTACATATACATGTTTG 59.347 37.037 5.01 2.49 42.98 2.93
3453 8727 7.686615 GCCAAAGGCCATTACATATACATGTTT 60.687 37.037 5.01 0.00 41.91 2.83
3454 8728 6.239289 GCCAAAGGCCATTACATATACATGTT 60.239 38.462 5.01 0.00 41.91 2.71
3455 8729 5.243730 GCCAAAGGCCATTACATATACATGT 59.756 40.000 5.01 2.69 44.58 3.21
3456 8730 5.713025 GCCAAAGGCCATTACATATACATG 58.287 41.667 5.01 0.00 44.06 3.21
3457 8731 5.982890 GCCAAAGGCCATTACATATACAT 57.017 39.130 5.01 0.00 44.06 2.29
3471 8745 5.772274 AGTATTCACTGAGGGCCAAAGGC 62.772 52.174 6.18 0.00 40.09 4.35
3472 8746 2.025887 AGTATTCACTGAGGGCCAAAGG 60.026 50.000 6.18 0.00 32.25 3.11
3473 8747 3.356529 AGTATTCACTGAGGGCCAAAG 57.643 47.619 6.18 4.93 32.25 2.77
3474 8748 3.844211 ACTAGTATTCACTGAGGGCCAAA 59.156 43.478 6.18 0.00 36.14 3.28
3475 8749 3.450904 ACTAGTATTCACTGAGGGCCAA 58.549 45.455 6.18 0.00 36.14 4.52
3476 8750 3.116096 ACTAGTATTCACTGAGGGCCA 57.884 47.619 6.18 0.00 36.14 5.36
3477 8751 3.798202 CAACTAGTATTCACTGAGGGCC 58.202 50.000 0.00 0.00 36.14 5.80
3478 8752 3.118592 AGCAACTAGTATTCACTGAGGGC 60.119 47.826 0.00 0.00 36.14 5.19
3479 8753 4.081420 ACAGCAACTAGTATTCACTGAGGG 60.081 45.833 14.00 0.00 36.14 4.30
3480 8754 5.078411 ACAGCAACTAGTATTCACTGAGG 57.922 43.478 14.00 0.79 36.14 3.86
3481 8755 8.709386 ATAAACAGCAACTAGTATTCACTGAG 57.291 34.615 14.00 1.37 36.14 3.35
3482 8756 8.531982 AGATAAACAGCAACTAGTATTCACTGA 58.468 33.333 14.00 0.00 36.14 3.41
3483 8757 8.709386 AGATAAACAGCAACTAGTATTCACTG 57.291 34.615 0.00 2.58 36.14 3.66
3501 8775 8.839310 AGCATCTGATACCATGTTAGATAAAC 57.161 34.615 0.00 0.00 38.67 2.01
3503 8777 8.753133 CCTAGCATCTGATACCATGTTAGATAA 58.247 37.037 4.82 0.00 36.44 1.75
3504 8778 7.895962 ACCTAGCATCTGATACCATGTTAGATA 59.104 37.037 4.82 0.00 36.44 1.98
3505 8779 6.728164 ACCTAGCATCTGATACCATGTTAGAT 59.272 38.462 4.82 0.00 36.44 1.98
3506 8780 6.077993 ACCTAGCATCTGATACCATGTTAGA 58.922 40.000 4.82 0.00 36.44 2.10
3507 8781 6.352016 ACCTAGCATCTGATACCATGTTAG 57.648 41.667 0.00 0.00 34.97 2.34
3508 8782 6.747414 AACCTAGCATCTGATACCATGTTA 57.253 37.500 0.00 0.00 0.00 2.41
3509 8783 5.636903 AACCTAGCATCTGATACCATGTT 57.363 39.130 0.00 0.00 0.00 2.71
3510 8784 6.352016 CTAACCTAGCATCTGATACCATGT 57.648 41.667 0.00 0.00 0.00 3.21
3528 8802 2.058595 TGCGGGAGAGAGGCTAACC 61.059 63.158 0.00 0.00 0.00 2.85
3529 8803 1.142097 GTGCGGGAGAGAGGCTAAC 59.858 63.158 0.00 0.00 0.00 2.34
3530 8804 2.415608 CGTGCGGGAGAGAGGCTAA 61.416 63.158 0.00 0.00 0.00 3.09
3531 8805 2.626255 ATCGTGCGGGAGAGAGGCTA 62.626 60.000 0.00 0.00 0.00 3.93
3532 8806 4.742649 TCGTGCGGGAGAGAGGCT 62.743 66.667 0.00 0.00 0.00 4.58
3533 8807 3.532155 ATCGTGCGGGAGAGAGGC 61.532 66.667 0.00 0.00 0.00 4.70
3534 8808 2.415010 CATCGTGCGGGAGAGAGG 59.585 66.667 0.00 0.00 0.00 3.69
3535 8809 2.279120 GCATCGTGCGGGAGAGAG 60.279 66.667 0.00 0.00 31.71 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.