Multiple sequence alignment - TraesCS6D01G189100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G189100 chr6D 100.000 5292 0 0 1 5292 262014261 262019552 0.000000e+00 9773.0
1 TraesCS6D01G189100 chr6D 95.517 290 10 3 193 481 433331422 433331709 1.340000e-125 460.0
2 TraesCS6D01G189100 chr6B 96.273 4347 107 24 527 4856 374327826 374332134 0.000000e+00 7079.0
3 TraesCS6D01G189100 chr6B 92.157 153 5 5 4852 5003 374332167 374332313 5.370000e-50 209.0
4 TraesCS6D01G189100 chr6B 88.696 115 8 1 5003 5112 374332431 374332545 9.240000e-28 135.0
5 TraesCS6D01G189100 chr6B 97.674 43 1 0 493 535 374314464 374314506 2.040000e-09 75.0
6 TraesCS6D01G189100 chr6A 96.787 3392 59 12 518 3881 367769326 367772695 0.000000e+00 5614.0
7 TraesCS6D01G189100 chr6A 93.516 910 16 14 3871 4766 367773019 367773899 0.000000e+00 1314.0
8 TraesCS6D01G189100 chr6A 87.529 433 29 4 4755 5182 367786170 367786582 1.330000e-130 477.0
9 TraesCS6D01G189100 chr6A 91.129 248 18 2 5046 5291 367786581 367786826 3.050000e-87 333.0
10 TraesCS6D01G189100 chr6A 90.270 185 15 3 7 190 367762102 367762284 6.850000e-59 239.0
11 TraesCS6D01G189100 chr6A 79.602 201 30 8 4660 4858 362945487 362945678 3.320000e-27 134.0
12 TraesCS6D01G189100 chr2D 95.502 289 11 1 193 481 14707851 14708137 1.340000e-125 460.0
13 TraesCS6D01G189100 chr2D 93.939 297 14 4 191 487 629372283 629372575 3.760000e-121 446.0
14 TraesCS6D01G189100 chr2D 92.929 297 19 1 189 485 627328250 627328544 1.050000e-116 431.0
15 TraesCS6D01G189100 chr2D 90.370 135 12 1 5113 5247 485643819 485643686 5.450000e-40 176.0
16 TraesCS6D01G189100 chr2D 90.000 130 12 1 5113 5242 485600616 485600488 3.280000e-37 167.0
17 TraesCS6D01G189100 chr2D 88.321 137 13 3 5113 5247 485578310 485578175 1.530000e-35 161.0
18 TraesCS6D01G189100 chr2D 80.986 142 21 4 5113 5252 485492132 485491995 2.020000e-19 108.0
19 TraesCS6D01G189100 chr4D 94.539 293 12 4 193 485 45285392 45285680 2.910000e-122 449.0
20 TraesCS6D01G189100 chr4D 93.772 289 16 2 193 481 52769257 52769543 2.930000e-117 433.0
21 TraesCS6D01G189100 chr7B 93.493 292 17 2 190 481 14010255 14010544 2.930000e-117 433.0
22 TraesCS6D01G189100 chr1D 93.772 289 15 3 193 481 318132714 318132429 1.050000e-116 431.0
23 TraesCS6D01G189100 chr1D 92.333 300 20 3 187 486 142341426 142341722 1.760000e-114 424.0
24 TraesCS6D01G189100 chr1D 100.000 182 0 0 2523 2704 254865969 254866150 2.360000e-88 337.0
25 TraesCS6D01G189100 chr1D 76.020 196 36 10 4660 4852 342824913 342824726 2.030000e-14 91.6
26 TraesCS6D01G189100 chr2A 78.235 170 23 10 4671 4836 5000014 5000173 4.360000e-16 97.1
27 TraesCS6D01G189100 chr3B 80.769 104 12 6 4736 4838 383486819 383486723 2.040000e-09 75.0
28 TraesCS6D01G189100 chr5A 90.909 44 3 1 4736 4778 692048999 692049042 2.060000e-04 58.4
29 TraesCS6D01G189100 chr2B 100.000 30 0 0 4736 4765 536624836 536624865 7.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G189100 chr6D 262014261 262019552 5291 False 9773.000000 9773 100.000000 1 5292 1 chr6D.!!$F1 5291
1 TraesCS6D01G189100 chr6B 374327826 374332545 4719 False 2474.333333 7079 92.375333 527 5112 3 chr6B.!!$F2 4585
2 TraesCS6D01G189100 chr6A 367769326 367773899 4573 False 3464.000000 5614 95.151500 518 4766 2 chr6A.!!$F3 4248
3 TraesCS6D01G189100 chr6A 367786170 367786826 656 False 405.000000 477 89.329000 4755 5291 2 chr6A.!!$F4 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.032952 AGCTACGTTGTTGCGGAAGA 59.967 50.000 0.00 0.00 39.09 2.87 F
321 322 0.035458 AAGAGCCAGCTTTAGCACGT 59.965 50.000 4.33 0.00 45.16 4.49 F
516 517 0.037697 TGACATCAGTTCGGTTCCGG 60.038 55.000 11.37 0.00 0.00 5.14 F
1235 1257 0.179150 CAGCGTCTCTAGTGTGGAGC 60.179 60.000 0.00 0.00 0.00 4.70 F
2416 2462 1.024271 TCTGAGCAACTTGTTGGCAC 58.976 50.000 14.30 6.91 0.00 5.01 F
3120 3166 4.098807 GCCTTGAGGGTTTTTGTTACTTGA 59.901 41.667 0.00 0.00 37.43 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1493 1.073897 GCCTCCCAAGAACTGCACT 59.926 57.895 0.00 0.0 0.00 4.40 R
1703 1730 1.337703 GCTGCAACAACAGAATCCACA 59.662 47.619 0.00 0.0 40.25 4.17 R
1705 1732 1.610038 CTGCTGCAACAACAGAATCCA 59.390 47.619 3.02 0.0 40.25 3.41 R
2853 2899 0.107831 CTCGTTTGAGAACACCCCCA 59.892 55.000 0.00 0.0 45.57 4.96 R
3760 3806 1.464376 CCTCCACAGTGTCACGTCCT 61.464 60.000 0.00 0.0 0.00 3.85 R
4574 4962 0.178990 AACCTCCTTTGGCAGTGGTC 60.179 55.000 7.54 0.0 29.80 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.394712 AGGGGCGGCGTTCTTGAG 62.395 66.667 9.37 0.00 0.00 3.02
22 23 3.702048 CGGCGTTCTTGAGGGGGA 61.702 66.667 0.00 0.00 0.00 4.81
23 24 2.754375 GGCGTTCTTGAGGGGGAA 59.246 61.111 0.00 0.00 0.00 3.97
24 25 1.303282 GGCGTTCTTGAGGGGGAAT 59.697 57.895 0.00 0.00 0.00 3.01
25 26 0.323451 GGCGTTCTTGAGGGGGAATT 60.323 55.000 0.00 0.00 0.00 2.17
26 27 0.811281 GCGTTCTTGAGGGGGAATTG 59.189 55.000 0.00 0.00 0.00 2.32
27 28 0.811281 CGTTCTTGAGGGGGAATTGC 59.189 55.000 0.00 0.00 0.00 3.56
28 29 0.811281 GTTCTTGAGGGGGAATTGCG 59.189 55.000 0.00 0.00 0.00 4.85
29 30 0.404040 TTCTTGAGGGGGAATTGCGT 59.596 50.000 0.00 0.00 0.00 5.24
30 31 0.035439 TCTTGAGGGGGAATTGCGTC 60.035 55.000 0.00 0.00 0.00 5.19
31 32 1.369091 CTTGAGGGGGAATTGCGTCG 61.369 60.000 0.00 0.00 0.00 5.12
32 33 2.119484 TTGAGGGGGAATTGCGTCGT 62.119 55.000 0.00 0.00 0.00 4.34
33 34 1.376812 GAGGGGGAATTGCGTCGTT 60.377 57.895 0.00 0.00 0.00 3.85
34 35 0.958876 GAGGGGGAATTGCGTCGTTT 60.959 55.000 0.00 0.00 0.00 3.60
35 36 0.538746 AGGGGGAATTGCGTCGTTTT 60.539 50.000 0.00 0.00 0.00 2.43
36 37 0.315886 GGGGGAATTGCGTCGTTTTT 59.684 50.000 0.00 0.00 0.00 1.94
51 52 2.034607 TTTTTCTTTGACCGGCGGG 58.965 52.632 31.78 12.18 40.11 6.13
52 53 0.465824 TTTTTCTTTGACCGGCGGGA 60.466 50.000 31.78 14.63 36.97 5.14
53 54 0.465824 TTTTCTTTGACCGGCGGGAA 60.466 50.000 31.78 19.92 36.97 3.97
54 55 0.887387 TTTCTTTGACCGGCGGGAAG 60.887 55.000 31.78 27.07 36.97 3.46
64 65 3.961729 GCGGGAAGCTACGTTGTT 58.038 55.556 0.00 0.00 44.04 2.83
65 66 1.495951 GCGGGAAGCTACGTTGTTG 59.504 57.895 0.00 0.00 44.04 3.33
66 67 1.495951 CGGGAAGCTACGTTGTTGC 59.504 57.895 0.00 0.00 34.77 4.17
67 68 1.495951 GGGAAGCTACGTTGTTGCG 59.504 57.895 0.00 0.00 39.09 4.85
68 69 1.495951 GGAAGCTACGTTGTTGCGG 59.504 57.895 0.00 0.00 39.09 5.69
69 70 0.947180 GGAAGCTACGTTGTTGCGGA 60.947 55.000 0.00 0.00 39.09 5.54
70 71 0.863144 GAAGCTACGTTGTTGCGGAA 59.137 50.000 0.00 0.00 39.09 4.30
71 72 0.865769 AAGCTACGTTGTTGCGGAAG 59.134 50.000 0.00 0.00 39.09 3.46
72 73 0.032952 AGCTACGTTGTTGCGGAAGA 59.967 50.000 0.00 0.00 39.09 2.87
73 74 0.163146 GCTACGTTGTTGCGGAAGAC 59.837 55.000 0.00 0.00 35.98 3.01
74 75 1.493772 CTACGTTGTTGCGGAAGACA 58.506 50.000 0.00 0.00 35.98 3.41
75 76 1.862201 CTACGTTGTTGCGGAAGACAA 59.138 47.619 0.00 0.00 35.98 3.18
76 77 0.655733 ACGTTGTTGCGGAAGACAAG 59.344 50.000 0.00 0.00 36.52 3.16
77 78 0.934496 CGTTGTTGCGGAAGACAAGA 59.066 50.000 0.00 0.00 36.52 3.02
78 79 1.329292 CGTTGTTGCGGAAGACAAGAA 59.671 47.619 0.00 0.00 36.52 2.52
79 80 2.599848 CGTTGTTGCGGAAGACAAGAAG 60.600 50.000 0.00 0.00 36.52 2.85
80 81 0.944386 TGTTGCGGAAGACAAGAAGC 59.056 50.000 0.00 0.00 0.00 3.86
81 82 0.944386 GTTGCGGAAGACAAGAAGCA 59.056 50.000 0.00 0.00 0.00 3.91
82 83 0.944386 TTGCGGAAGACAAGAAGCAC 59.056 50.000 0.00 0.00 34.13 4.40
83 84 0.179059 TGCGGAAGACAAGAAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
84 85 0.235926 GCGGAAGACAAGAAGCACAC 59.764 55.000 0.00 0.00 0.00 3.82
85 86 0.508641 CGGAAGACAAGAAGCACACG 59.491 55.000 0.00 0.00 0.00 4.49
86 87 0.868406 GGAAGACAAGAAGCACACGG 59.132 55.000 0.00 0.00 0.00 4.94
87 88 0.868406 GAAGACAAGAAGCACACGGG 59.132 55.000 0.00 0.00 0.00 5.28
88 89 0.468226 AAGACAAGAAGCACACGGGA 59.532 50.000 0.00 0.00 0.00 5.14
89 90 0.249911 AGACAAGAAGCACACGGGAC 60.250 55.000 0.00 0.00 0.00 4.46
90 91 1.227853 ACAAGAAGCACACGGGACC 60.228 57.895 0.00 0.00 0.00 4.46
91 92 1.227823 CAAGAAGCACACGGGACCA 60.228 57.895 0.00 0.00 0.00 4.02
92 93 1.071471 AAGAAGCACACGGGACCAG 59.929 57.895 0.00 0.00 0.00 4.00
93 94 1.407656 AAGAAGCACACGGGACCAGA 61.408 55.000 0.00 0.00 0.00 3.86
94 95 1.194781 AGAAGCACACGGGACCAGAT 61.195 55.000 0.00 0.00 0.00 2.90
95 96 0.741221 GAAGCACACGGGACCAGATC 60.741 60.000 0.00 0.00 0.00 2.75
96 97 2.507110 AAGCACACGGGACCAGATCG 62.507 60.000 0.00 0.00 0.00 3.69
97 98 3.001902 GCACACGGGACCAGATCGA 62.002 63.158 0.00 0.00 0.00 3.59
98 99 1.589630 CACACGGGACCAGATCGAA 59.410 57.895 0.00 0.00 0.00 3.71
99 100 0.736325 CACACGGGACCAGATCGAAC 60.736 60.000 0.00 0.00 0.00 3.95
100 101 1.516386 CACGGGACCAGATCGAACG 60.516 63.158 0.00 0.00 0.00 3.95
101 102 2.104331 CGGGACCAGATCGAACGG 59.896 66.667 0.00 0.00 0.00 4.44
102 103 2.202892 GGGACCAGATCGAACGGC 60.203 66.667 0.00 0.00 0.00 5.68
103 104 2.722201 GGGACCAGATCGAACGGCT 61.722 63.158 0.00 0.00 0.00 5.52
104 105 1.519455 GGACCAGATCGAACGGCTG 60.519 63.158 0.00 0.00 0.00 4.85
105 106 1.511305 GACCAGATCGAACGGCTGA 59.489 57.895 0.00 0.00 0.00 4.26
106 107 0.103208 GACCAGATCGAACGGCTGAT 59.897 55.000 0.00 0.00 0.00 2.90
107 108 0.537188 ACCAGATCGAACGGCTGATT 59.463 50.000 0.00 0.00 0.00 2.57
108 109 0.933097 CCAGATCGAACGGCTGATTG 59.067 55.000 0.00 0.00 0.00 2.67
109 110 0.302890 CAGATCGAACGGCTGATTGC 59.697 55.000 0.00 0.00 41.94 3.56
110 111 0.108186 AGATCGAACGGCTGATTGCA 60.108 50.000 0.00 0.00 45.15 4.08
111 112 0.302890 GATCGAACGGCTGATTGCAG 59.697 55.000 0.00 0.00 45.15 4.41
121 122 1.376543 CTGATTGCAGCCGAATCAGT 58.623 50.000 20.29 0.00 46.33 3.41
122 123 1.329906 CTGATTGCAGCCGAATCAGTC 59.670 52.381 20.29 0.00 46.33 3.51
123 124 4.176059 CTGATTGCAGCCGAATCAGTCG 62.176 54.545 20.29 0.00 46.33 4.18
130 131 3.918220 CGAATCAGTCGGCTGCGC 61.918 66.667 13.43 0.00 46.45 6.09
131 132 2.510238 GAATCAGTCGGCTGCGCT 60.510 61.111 13.43 0.00 42.29 5.92
132 133 2.510238 AATCAGTCGGCTGCGCTC 60.510 61.111 13.43 0.00 42.29 5.03
133 134 4.521062 ATCAGTCGGCTGCGCTCC 62.521 66.667 13.43 9.22 42.29 4.70
142 143 4.933064 CTGCGCTCCGATCGACCC 62.933 72.222 18.66 2.67 0.00 4.46
144 145 4.508128 GCGCTCCGATCGACCCAA 62.508 66.667 18.66 0.00 0.00 4.12
145 146 2.183300 CGCTCCGATCGACCCAAA 59.817 61.111 18.66 0.00 0.00 3.28
146 147 1.227263 CGCTCCGATCGACCCAAAT 60.227 57.895 18.66 0.00 0.00 2.32
147 148 0.810031 CGCTCCGATCGACCCAAATT 60.810 55.000 18.66 0.00 0.00 1.82
148 149 1.379527 GCTCCGATCGACCCAAATTT 58.620 50.000 18.66 0.00 0.00 1.82
149 150 1.064060 GCTCCGATCGACCCAAATTTG 59.936 52.381 18.66 11.40 0.00 2.32
158 159 2.571231 CCAAATTTGGGTCGGCCG 59.429 61.111 26.87 22.12 44.70 6.13
159 160 1.974343 CCAAATTTGGGTCGGCCGA 60.974 57.895 27.28 27.28 44.70 5.54
160 161 1.211709 CAAATTTGGGTCGGCCGAC 59.788 57.895 43.30 43.30 43.87 4.79
175 176 2.668550 GACCGGCGCTGTCCTTTT 60.669 61.111 16.49 0.00 0.00 2.27
176 177 2.668550 ACCGGCGCTGTCCTTTTC 60.669 61.111 16.49 0.00 0.00 2.29
177 178 3.788766 CCGGCGCTGTCCTTTTCG 61.789 66.667 16.49 2.43 0.00 3.46
178 179 3.041940 CGGCGCTGTCCTTTTCGT 61.042 61.111 8.45 0.00 0.00 3.85
179 180 2.604174 CGGCGCTGTCCTTTTCGTT 61.604 57.895 8.45 0.00 0.00 3.85
180 181 1.206831 GGCGCTGTCCTTTTCGTTC 59.793 57.895 7.64 0.00 0.00 3.95
181 182 1.154654 GCGCTGTCCTTTTCGTTCG 60.155 57.895 0.00 0.00 0.00 3.95
182 183 1.828331 GCGCTGTCCTTTTCGTTCGT 61.828 55.000 0.00 0.00 0.00 3.85
183 184 0.111266 CGCTGTCCTTTTCGTTCGTG 60.111 55.000 0.00 0.00 0.00 4.35
184 185 0.384353 GCTGTCCTTTTCGTTCGTGC 60.384 55.000 0.00 0.00 0.00 5.34
185 186 1.217882 CTGTCCTTTTCGTTCGTGCT 58.782 50.000 0.00 0.00 0.00 4.40
186 187 1.597663 CTGTCCTTTTCGTTCGTGCTT 59.402 47.619 0.00 0.00 0.00 3.91
187 188 2.011222 TGTCCTTTTCGTTCGTGCTTT 58.989 42.857 0.00 0.00 0.00 3.51
188 189 2.031191 TGTCCTTTTCGTTCGTGCTTTC 59.969 45.455 0.00 0.00 0.00 2.62
189 190 1.600485 TCCTTTTCGTTCGTGCTTTCC 59.400 47.619 0.00 0.00 0.00 3.13
190 191 1.602377 CCTTTTCGTTCGTGCTTTCCT 59.398 47.619 0.00 0.00 0.00 3.36
191 192 2.602217 CCTTTTCGTTCGTGCTTTCCTG 60.602 50.000 0.00 0.00 0.00 3.86
192 193 1.942677 TTTCGTTCGTGCTTTCCTGA 58.057 45.000 0.00 0.00 0.00 3.86
193 194 1.497991 TTCGTTCGTGCTTTCCTGAG 58.502 50.000 0.00 0.00 0.00 3.35
194 195 0.671796 TCGTTCGTGCTTTCCTGAGA 59.328 50.000 0.00 0.00 0.00 3.27
195 196 1.063806 CGTTCGTGCTTTCCTGAGAG 58.936 55.000 0.00 0.00 0.00 3.20
196 197 0.793250 GTTCGTGCTTTCCTGAGAGC 59.207 55.000 2.90 2.90 39.33 4.09
197 198 0.392706 TTCGTGCTTTCCTGAGAGCA 59.607 50.000 8.17 8.17 45.91 4.26
202 203 3.988976 TGCTTTCCTGAGAGCAAGTAT 57.011 42.857 9.66 0.00 45.19 2.12
204 205 5.420725 TGCTTTCCTGAGAGCAAGTATAA 57.579 39.130 9.66 0.00 45.19 0.98
205 206 5.994250 TGCTTTCCTGAGAGCAAGTATAAT 58.006 37.500 9.66 0.00 45.19 1.28
206 207 7.124573 TGCTTTCCTGAGAGCAAGTATAATA 57.875 36.000 9.66 0.00 45.19 0.98
207 208 7.212976 TGCTTTCCTGAGAGCAAGTATAATAG 58.787 38.462 9.66 0.00 45.19 1.73
208 209 7.069950 TGCTTTCCTGAGAGCAAGTATAATAGA 59.930 37.037 9.66 0.00 45.19 1.98
209 210 7.598493 GCTTTCCTGAGAGCAAGTATAATAGAG 59.402 40.741 4.92 0.00 38.73 2.43
210 211 6.582677 TCCTGAGAGCAAGTATAATAGAGC 57.417 41.667 0.00 0.00 0.00 4.09
211 212 6.310941 TCCTGAGAGCAAGTATAATAGAGCT 58.689 40.000 0.00 0.00 34.61 4.09
212 213 6.208402 TCCTGAGAGCAAGTATAATAGAGCTG 59.792 42.308 0.00 0.00 31.61 4.24
213 214 6.208402 CCTGAGAGCAAGTATAATAGAGCTGA 59.792 42.308 0.00 0.00 31.61 4.26
214 215 6.976088 TGAGAGCAAGTATAATAGAGCTGAC 58.024 40.000 0.00 0.00 31.61 3.51
215 216 6.775142 TGAGAGCAAGTATAATAGAGCTGACT 59.225 38.462 0.00 0.00 31.61 3.41
216 217 7.040755 TGAGAGCAAGTATAATAGAGCTGACTC 60.041 40.741 0.00 0.00 43.82 3.36
217 218 6.775142 AGAGCAAGTATAATAGAGCTGACTCA 59.225 38.462 0.00 0.00 46.09 3.41
218 219 6.980593 AGCAAGTATAATAGAGCTGACTCAG 58.019 40.000 1.21 1.21 46.09 3.35
229 230 2.430546 CTGACTCAGCGGGCTATAAG 57.569 55.000 0.00 0.00 0.00 1.73
230 231 1.000283 CTGACTCAGCGGGCTATAAGG 60.000 57.143 0.00 0.00 0.00 2.69
231 232 1.329256 GACTCAGCGGGCTATAAGGA 58.671 55.000 0.00 0.00 0.00 3.36
232 233 1.687123 GACTCAGCGGGCTATAAGGAA 59.313 52.381 0.00 0.00 0.00 3.36
233 234 2.300437 GACTCAGCGGGCTATAAGGAAT 59.700 50.000 0.00 0.00 0.00 3.01
234 235 3.507411 ACTCAGCGGGCTATAAGGAATA 58.493 45.455 0.00 0.00 0.00 1.75
235 236 3.901844 ACTCAGCGGGCTATAAGGAATAA 59.098 43.478 0.00 0.00 0.00 1.40
236 237 4.347000 ACTCAGCGGGCTATAAGGAATAAA 59.653 41.667 0.00 0.00 0.00 1.40
237 238 4.638304 TCAGCGGGCTATAAGGAATAAAC 58.362 43.478 0.00 0.00 0.00 2.01
238 239 4.347000 TCAGCGGGCTATAAGGAATAAACT 59.653 41.667 0.00 0.00 0.00 2.66
239 240 5.541101 TCAGCGGGCTATAAGGAATAAACTA 59.459 40.000 0.00 0.00 0.00 2.24
240 241 5.869888 CAGCGGGCTATAAGGAATAAACTAG 59.130 44.000 0.00 0.00 0.00 2.57
241 242 5.543020 AGCGGGCTATAAGGAATAAACTAGT 59.457 40.000 0.00 0.00 0.00 2.57
242 243 6.723052 AGCGGGCTATAAGGAATAAACTAGTA 59.277 38.462 0.00 0.00 0.00 1.82
243 244 7.399478 AGCGGGCTATAAGGAATAAACTAGTAT 59.601 37.037 0.00 0.00 0.00 2.12
244 245 8.689972 GCGGGCTATAAGGAATAAACTAGTATA 58.310 37.037 0.00 0.00 0.00 1.47
262 263 8.643324 ACTAGTATATTTCTGCTTAGTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
263 264 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
264 265 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
265 266 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
266 267 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
267 268 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
268 269 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
269 270 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
270 271 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
271 272 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
272 273 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
273 274 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
274 275 5.729510 CTTAGTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
275 276 3.863086 AGTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
276 277 3.837731 AGTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
277 278 3.835395 GTTGGAGGAAAGAGAAGAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
278 279 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
279 280 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
280 281 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
281 282 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
282 283 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
283 284 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
284 285 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
285 286 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
286 287 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
287 288 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
288 289 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
289 290 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
290 291 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
291 292 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
292 293 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
293 294 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
294 295 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
295 296 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
296 297 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
297 298 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
298 299 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
299 300 0.249398 GAAGGTAAGCGGGCTCTTCA 59.751 55.000 12.90 0.00 35.31 3.02
300 301 0.912486 AAGGTAAGCGGGCTCTTCAT 59.088 50.000 0.00 0.00 0.00 2.57
301 302 0.179000 AGGTAAGCGGGCTCTTCATG 59.821 55.000 0.00 0.00 0.00 3.07
302 303 0.178068 GGTAAGCGGGCTCTTCATGA 59.822 55.000 0.00 0.00 0.00 3.07
303 304 1.406887 GGTAAGCGGGCTCTTCATGAA 60.407 52.381 8.12 8.12 0.00 2.57
304 305 1.936547 GTAAGCGGGCTCTTCATGAAG 59.063 52.381 26.56 26.56 39.71 3.02
305 306 0.615331 AAGCGGGCTCTTCATGAAGA 59.385 50.000 31.10 31.10 44.47 2.87
314 315 3.430042 TCTTCATGAAGAGCCAGCTTT 57.570 42.857 30.05 0.00 42.06 3.51
315 316 4.558226 TCTTCATGAAGAGCCAGCTTTA 57.442 40.909 30.05 7.92 42.06 1.85
316 317 4.511527 TCTTCATGAAGAGCCAGCTTTAG 58.488 43.478 30.05 5.05 42.06 1.85
317 318 2.636830 TCATGAAGAGCCAGCTTTAGC 58.363 47.619 0.00 0.00 42.49 3.09
318 319 2.026915 TCATGAAGAGCCAGCTTTAGCA 60.027 45.455 4.33 0.00 45.16 3.49
319 320 1.813513 TGAAGAGCCAGCTTTAGCAC 58.186 50.000 4.33 0.00 45.16 4.40
320 321 0.723981 GAAGAGCCAGCTTTAGCACG 59.276 55.000 4.33 0.00 45.16 5.34
321 322 0.035458 AAGAGCCAGCTTTAGCACGT 59.965 50.000 4.33 0.00 45.16 4.49
322 323 0.671781 AGAGCCAGCTTTAGCACGTG 60.672 55.000 12.28 12.28 45.16 4.49
323 324 2.176792 GCCAGCTTTAGCACGTGC 59.823 61.111 32.79 32.79 45.16 5.34
333 334 4.170723 GCACGTGCTCCTAGTCAC 57.829 61.111 32.55 0.00 38.21 3.67
334 335 1.587054 GCACGTGCTCCTAGTCACT 59.413 57.895 32.55 0.00 38.21 3.41
335 336 0.038159 GCACGTGCTCCTAGTCACTT 60.038 55.000 32.55 0.00 38.21 3.16
336 337 1.605712 GCACGTGCTCCTAGTCACTTT 60.606 52.381 32.55 0.00 38.21 2.66
337 338 2.061773 CACGTGCTCCTAGTCACTTTG 58.938 52.381 0.82 0.92 0.00 2.77
338 339 1.687123 ACGTGCTCCTAGTCACTTTGT 59.313 47.619 0.00 0.00 0.00 2.83
339 340 2.061773 CGTGCTCCTAGTCACTTTGTG 58.938 52.381 0.00 0.00 34.45 3.33
340 341 2.288213 CGTGCTCCTAGTCACTTTGTGA 60.288 50.000 0.00 0.00 40.50 3.58
341 342 3.321497 GTGCTCCTAGTCACTTTGTGAG 58.679 50.000 0.20 0.00 43.57 3.51
342 343 3.005897 GTGCTCCTAGTCACTTTGTGAGA 59.994 47.826 0.20 0.00 43.57 3.27
343 344 3.641436 TGCTCCTAGTCACTTTGTGAGAA 59.359 43.478 0.20 0.00 43.57 2.87
344 345 4.284490 TGCTCCTAGTCACTTTGTGAGAAT 59.716 41.667 0.20 0.00 43.57 2.40
345 346 4.629200 GCTCCTAGTCACTTTGTGAGAATG 59.371 45.833 0.20 0.00 43.57 2.67
346 347 5.567623 GCTCCTAGTCACTTTGTGAGAATGA 60.568 44.000 0.20 0.00 43.57 2.57
347 348 6.419484 TCCTAGTCACTTTGTGAGAATGAA 57.581 37.500 0.20 0.00 43.57 2.57
348 349 6.826668 TCCTAGTCACTTTGTGAGAATGAAA 58.173 36.000 0.20 0.00 43.57 2.69
349 350 6.931281 TCCTAGTCACTTTGTGAGAATGAAAG 59.069 38.462 0.20 0.00 43.57 2.62
350 351 6.148480 CCTAGTCACTTTGTGAGAATGAAAGG 59.852 42.308 0.20 0.00 43.57 3.11
351 352 5.440610 AGTCACTTTGTGAGAATGAAAGGT 58.559 37.500 0.20 0.00 43.57 3.50
352 353 5.297776 AGTCACTTTGTGAGAATGAAAGGTG 59.702 40.000 0.20 0.00 43.57 4.00
353 354 4.580167 TCACTTTGTGAGAATGAAAGGTGG 59.420 41.667 0.00 0.00 37.67 4.61
354 355 3.891366 ACTTTGTGAGAATGAAAGGTGGG 59.109 43.478 0.00 0.00 0.00 4.61
355 356 3.593442 TTGTGAGAATGAAAGGTGGGT 57.407 42.857 0.00 0.00 0.00 4.51
356 357 3.140325 TGTGAGAATGAAAGGTGGGTC 57.860 47.619 0.00 0.00 0.00 4.46
357 358 2.441375 TGTGAGAATGAAAGGTGGGTCA 59.559 45.455 0.00 0.00 0.00 4.02
358 359 2.814336 GTGAGAATGAAAGGTGGGTCAC 59.186 50.000 0.00 0.00 0.00 3.67
359 360 2.441375 TGAGAATGAAAGGTGGGTCACA 59.559 45.455 0.38 0.00 35.86 3.58
360 361 3.074390 TGAGAATGAAAGGTGGGTCACAT 59.926 43.478 0.38 0.00 35.86 3.21
361 362 4.288366 TGAGAATGAAAGGTGGGTCACATA 59.712 41.667 0.38 0.00 35.86 2.29
362 363 5.222027 TGAGAATGAAAGGTGGGTCACATAA 60.222 40.000 0.38 0.00 35.86 1.90
363 364 5.831103 AGAATGAAAGGTGGGTCACATAAT 58.169 37.500 0.38 0.00 35.86 1.28
364 365 6.969043 AGAATGAAAGGTGGGTCACATAATA 58.031 36.000 0.38 0.00 35.86 0.98
365 366 7.410174 AGAATGAAAGGTGGGTCACATAATAA 58.590 34.615 0.38 0.00 35.86 1.40
366 367 8.061304 AGAATGAAAGGTGGGTCACATAATAAT 58.939 33.333 0.38 0.00 35.86 1.28
367 368 9.349713 GAATGAAAGGTGGGTCACATAATAATA 57.650 33.333 0.38 0.00 35.86 0.98
368 369 9.707957 AATGAAAGGTGGGTCACATAATAATAA 57.292 29.630 0.38 0.00 35.86 1.40
369 370 9.707957 ATGAAAGGTGGGTCACATAATAATAAA 57.292 29.630 0.38 0.00 35.86 1.40
370 371 9.535170 TGAAAGGTGGGTCACATAATAATAAAA 57.465 29.630 0.38 0.00 35.86 1.52
409 410 7.786178 TTGATCTACTATTGTACATGTTGGC 57.214 36.000 2.30 0.00 0.00 4.52
410 411 7.124573 TGATCTACTATTGTACATGTTGGCT 57.875 36.000 2.30 0.00 0.00 4.75
411 412 8.245195 TGATCTACTATTGTACATGTTGGCTA 57.755 34.615 2.30 0.00 0.00 3.93
412 413 8.870116 TGATCTACTATTGTACATGTTGGCTAT 58.130 33.333 2.30 0.64 0.00 2.97
418 419 9.494271 ACTATTGTACATGTTGGCTATAAGATG 57.506 33.333 2.30 0.00 37.35 2.90
419 420 7.750229 ATTGTACATGTTGGCTATAAGATGG 57.250 36.000 2.30 0.00 36.09 3.51
420 421 5.620206 TGTACATGTTGGCTATAAGATGGG 58.380 41.667 2.30 0.00 36.09 4.00
421 422 3.490348 ACATGTTGGCTATAAGATGGGC 58.510 45.455 0.00 0.00 36.09 5.36
422 423 3.139025 ACATGTTGGCTATAAGATGGGCT 59.861 43.478 0.00 0.00 36.09 5.19
423 424 3.213206 TGTTGGCTATAAGATGGGCTG 57.787 47.619 0.00 0.00 37.22 4.85
424 425 2.509548 TGTTGGCTATAAGATGGGCTGT 59.490 45.455 0.00 0.00 37.22 4.40
425 426 3.714280 TGTTGGCTATAAGATGGGCTGTA 59.286 43.478 0.00 0.00 37.22 2.74
426 427 4.202357 TGTTGGCTATAAGATGGGCTGTAG 60.202 45.833 0.00 0.00 37.22 2.74
427 428 3.856900 TGGCTATAAGATGGGCTGTAGA 58.143 45.455 0.00 0.00 37.22 2.59
428 429 4.429505 TGGCTATAAGATGGGCTGTAGAT 58.570 43.478 0.00 0.00 37.22 1.98
429 430 4.223700 TGGCTATAAGATGGGCTGTAGATG 59.776 45.833 0.00 0.00 37.22 2.90
430 431 4.467795 GGCTATAAGATGGGCTGTAGATGA 59.532 45.833 0.00 0.00 33.43 2.92
431 432 5.415221 GCTATAAGATGGGCTGTAGATGAC 58.585 45.833 0.00 0.00 0.00 3.06
432 433 5.047021 GCTATAAGATGGGCTGTAGATGACA 60.047 44.000 0.00 0.00 36.35 3.58
433 434 6.351711 GCTATAAGATGGGCTGTAGATGACAT 60.352 42.308 0.00 0.00 37.45 3.06
434 435 3.766068 AGATGGGCTGTAGATGACATG 57.234 47.619 0.00 0.00 37.45 3.21
435 436 3.311990 AGATGGGCTGTAGATGACATGA 58.688 45.455 0.00 0.00 37.45 3.07
436 437 2.988010 TGGGCTGTAGATGACATGAC 57.012 50.000 0.00 0.00 37.45 3.06
437 438 2.187100 TGGGCTGTAGATGACATGACA 58.813 47.619 0.00 0.00 37.45 3.58
438 439 2.773661 TGGGCTGTAGATGACATGACAT 59.226 45.455 10.50 10.50 37.45 3.06
439 440 3.200605 TGGGCTGTAGATGACATGACATT 59.799 43.478 11.92 5.38 37.45 2.71
440 441 4.408596 TGGGCTGTAGATGACATGACATTA 59.591 41.667 11.92 4.54 37.45 1.90
441 442 4.993584 GGGCTGTAGATGACATGACATTAG 59.006 45.833 11.92 9.31 37.45 1.73
442 443 5.453903 GGGCTGTAGATGACATGACATTAGT 60.454 44.000 11.92 3.57 37.45 2.24
443 444 6.051717 GGCTGTAGATGACATGACATTAGTT 58.948 40.000 11.92 2.36 37.45 2.24
444 445 6.540189 GGCTGTAGATGACATGACATTAGTTT 59.460 38.462 11.92 0.23 37.45 2.66
445 446 7.404985 GCTGTAGATGACATGACATTAGTTTG 58.595 38.462 11.92 3.68 37.45 2.93
446 447 7.065085 GCTGTAGATGACATGACATTAGTTTGT 59.935 37.037 11.92 0.00 37.45 2.83
447 448 9.586435 CTGTAGATGACATGACATTAGTTTGTA 57.414 33.333 11.92 0.00 37.45 2.41
448 449 9.586435 TGTAGATGACATGACATTAGTTTGTAG 57.414 33.333 11.92 0.00 31.20 2.74
449 450 7.545362 AGATGACATGACATTAGTTTGTAGC 57.455 36.000 11.92 0.00 0.00 3.58
450 451 6.540189 AGATGACATGACATTAGTTTGTAGCC 59.460 38.462 11.92 0.00 0.00 3.93
451 452 5.555966 TGACATGACATTAGTTTGTAGCCA 58.444 37.500 0.00 0.00 0.00 4.75
452 453 5.643348 TGACATGACATTAGTTTGTAGCCAG 59.357 40.000 0.00 0.00 0.00 4.85
453 454 4.396166 ACATGACATTAGTTTGTAGCCAGC 59.604 41.667 0.00 0.00 0.00 4.85
454 455 4.014569 TGACATTAGTTTGTAGCCAGCA 57.985 40.909 0.00 0.00 0.00 4.41
455 456 4.002982 TGACATTAGTTTGTAGCCAGCAG 58.997 43.478 0.00 0.00 0.00 4.24
456 457 2.749621 ACATTAGTTTGTAGCCAGCAGC 59.250 45.455 0.00 0.00 44.25 5.25
474 475 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
475 476 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
476 477 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
477 478 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
478 479 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
479 480 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
480 481 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
481 482 6.701340 TGGCTATACTATTAACCATGCTCTG 58.299 40.000 0.00 0.00 0.00 3.35
482 483 6.496911 TGGCTATACTATTAACCATGCTCTGA 59.503 38.462 0.00 0.00 0.00 3.27
483 484 7.016170 TGGCTATACTATTAACCATGCTCTGAA 59.984 37.037 0.00 0.00 0.00 3.02
484 485 7.547370 GGCTATACTATTAACCATGCTCTGAAG 59.453 40.741 0.00 0.00 0.00 3.02
485 486 7.547370 GCTATACTATTAACCATGCTCTGAAGG 59.453 40.741 0.00 0.00 0.00 3.46
486 487 5.041191 ACTATTAACCATGCTCTGAAGGG 57.959 43.478 0.00 0.00 0.00 3.95
487 488 4.721776 ACTATTAACCATGCTCTGAAGGGA 59.278 41.667 0.00 0.00 0.00 4.20
488 489 4.591321 ATTAACCATGCTCTGAAGGGAA 57.409 40.909 0.00 0.00 0.00 3.97
489 490 2.503895 AACCATGCTCTGAAGGGAAG 57.496 50.000 0.00 0.00 0.00 3.46
490 491 1.366319 ACCATGCTCTGAAGGGAAGT 58.634 50.000 0.00 0.00 0.00 3.01
491 492 1.280421 ACCATGCTCTGAAGGGAAGTC 59.720 52.381 0.00 0.00 0.00 3.01
492 493 1.280133 CCATGCTCTGAAGGGAAGTCA 59.720 52.381 0.00 0.00 0.00 3.41
493 494 2.354259 CATGCTCTGAAGGGAAGTCAC 58.646 52.381 0.00 0.00 0.00 3.67
494 495 0.687354 TGCTCTGAAGGGAAGTCACC 59.313 55.000 0.00 0.00 0.00 4.02
495 496 0.980423 GCTCTGAAGGGAAGTCACCT 59.020 55.000 0.00 0.00 40.96 4.00
496 497 1.066502 GCTCTGAAGGGAAGTCACCTC 60.067 57.143 0.00 0.00 37.35 3.85
497 498 2.534990 CTCTGAAGGGAAGTCACCTCT 58.465 52.381 0.00 0.00 37.35 3.69
498 499 2.233431 CTCTGAAGGGAAGTCACCTCTG 59.767 54.545 0.00 0.00 37.35 3.35
499 500 2.158310 TCTGAAGGGAAGTCACCTCTGA 60.158 50.000 0.00 0.00 37.35 3.27
500 501 1.971357 TGAAGGGAAGTCACCTCTGAC 59.029 52.381 0.00 0.00 46.50 3.51
509 510 2.600731 GTCACCTCTGACATCAGTTCG 58.399 52.381 8.70 0.97 45.57 3.95
510 511 1.546029 TCACCTCTGACATCAGTTCGG 59.454 52.381 8.70 9.95 44.12 4.30
511 512 1.273606 CACCTCTGACATCAGTTCGGT 59.726 52.381 8.70 10.50 44.12 4.69
512 513 1.971357 ACCTCTGACATCAGTTCGGTT 59.029 47.619 8.70 0.00 44.12 4.44
513 514 2.028930 ACCTCTGACATCAGTTCGGTTC 60.029 50.000 8.70 0.00 44.12 3.62
514 515 2.611518 CTCTGACATCAGTTCGGTTCC 58.388 52.381 8.70 0.00 44.12 3.62
515 516 1.067846 TCTGACATCAGTTCGGTTCCG 60.068 52.381 8.70 4.74 44.12 4.30
516 517 0.037697 TGACATCAGTTCGGTTCCGG 60.038 55.000 11.37 0.00 0.00 5.14
687 698 4.032900 CGACCAGAACTCAAATCCAATACG 59.967 45.833 0.00 0.00 0.00 3.06
784 795 2.183555 CCGACGGGTAAGAGCCAC 59.816 66.667 5.81 0.00 34.89 5.01
968 989 1.009829 CTCCGTGGTTGATTAGCAGC 58.990 55.000 0.00 0.00 34.32 5.25
1003 1024 2.040464 AGGGGAGCATCGGGATGT 60.040 61.111 10.14 0.00 40.80 3.06
1030 1051 4.394078 CGCCGTCGTCTTCGTCCA 62.394 66.667 0.00 0.00 38.33 4.02
1195 1217 3.620488 GTTTGATTGATAGCTCCCACCA 58.380 45.455 0.00 0.00 0.00 4.17
1235 1257 0.179150 CAGCGTCTCTAGTGTGGAGC 60.179 60.000 0.00 0.00 0.00 4.70
1303 1330 8.366671 AGTAACTCTGTTGTAAGATGACAAAC 57.633 34.615 0.00 0.00 40.88 2.93
1466 1493 2.805671 CACCTGTTTGTACGAATGCAGA 59.194 45.455 12.82 0.00 0.00 4.26
1640 1667 4.262164 GGTTGCTTGGAAAATGATGACACT 60.262 41.667 0.00 0.00 0.00 3.55
1699 1726 4.766891 CCATCCAACCACAAACTCTGTTAT 59.233 41.667 0.00 0.00 35.47 1.89
1700 1727 5.243730 CCATCCAACCACAAACTCTGTTATT 59.756 40.000 0.00 0.00 35.47 1.40
1701 1728 6.381801 CATCCAACCACAAACTCTGTTATTC 58.618 40.000 0.00 0.00 35.47 1.75
1702 1729 4.825085 TCCAACCACAAACTCTGTTATTCC 59.175 41.667 0.00 0.00 35.47 3.01
1703 1730 4.827284 CCAACCACAAACTCTGTTATTCCT 59.173 41.667 0.00 0.00 35.47 3.36
1704 1731 5.278463 CCAACCACAAACTCTGTTATTCCTG 60.278 44.000 0.00 0.00 35.47 3.86
1705 1732 5.048846 ACCACAAACTCTGTTATTCCTGT 57.951 39.130 0.00 0.00 35.47 4.00
1706 1733 4.821805 ACCACAAACTCTGTTATTCCTGTG 59.178 41.667 5.65 5.65 35.47 3.66
1707 1734 4.216257 CCACAAACTCTGTTATTCCTGTGG 59.784 45.833 13.36 13.36 44.64 4.17
1708 1735 5.063204 CACAAACTCTGTTATTCCTGTGGA 58.937 41.667 0.00 0.00 35.47 4.02
1709 1736 5.707298 CACAAACTCTGTTATTCCTGTGGAT 59.293 40.000 0.00 0.00 35.47 3.41
1710 1737 6.207417 CACAAACTCTGTTATTCCTGTGGATT 59.793 38.462 0.00 0.00 35.47 3.01
1711 1738 6.431234 ACAAACTCTGTTATTCCTGTGGATTC 59.569 38.462 0.00 0.00 32.99 2.52
1712 1739 6.380079 AACTCTGTTATTCCTGTGGATTCT 57.620 37.500 0.00 0.00 0.00 2.40
1713 1740 5.738909 ACTCTGTTATTCCTGTGGATTCTG 58.261 41.667 0.00 0.00 0.00 3.02
1931 1973 7.496529 TGTTGATCTTTCTAACAAGTTCTGG 57.503 36.000 0.00 0.00 31.95 3.86
2219 2263 9.271828 TGTGGTATGCTACTATTGTTATTCATG 57.728 33.333 0.00 0.00 0.00 3.07
2416 2462 1.024271 TCTGAGCAACTTGTTGGCAC 58.976 50.000 14.30 6.91 0.00 5.01
3120 3166 4.098807 GCCTTGAGGGTTTTTGTTACTTGA 59.901 41.667 0.00 0.00 37.43 3.02
3129 3175 8.387813 AGGGTTTTTGTTACTTGACATATAGGA 58.612 33.333 0.00 0.00 0.00 2.94
3760 3806 6.380995 TCGTGCTTATAACTTACAAGACGAA 58.619 36.000 9.86 0.40 33.34 3.85
4002 4387 7.064866 TGCTTATCCATCCTCTTCATGAATTT 58.935 34.615 8.96 0.00 0.00 1.82
4114 4499 8.320396 TCGCTTATTCTCTGTAGATATTACGT 57.680 34.615 0.00 0.00 0.00 3.57
4424 4809 8.837099 TTATTTCAATCCATATGTTCCAGGTT 57.163 30.769 1.24 0.00 0.00 3.50
4574 4962 9.507280 ACAAAATCGAATACAATTATGAGCAAG 57.493 29.630 0.00 0.00 0.00 4.01
4781 5176 2.872038 GCACTTTAGGAGACCCACTGTG 60.872 54.545 0.00 0.00 33.88 3.66
4944 5377 2.016318 CCAAGGCATCGCACTATTTCA 58.984 47.619 0.00 0.00 0.00 2.69
4956 5389 4.083855 CGCACTATTTCAACAGCAAGAAGA 60.084 41.667 0.00 0.00 0.00 2.87
4957 5390 5.560760 CGCACTATTTCAACAGCAAGAAGAA 60.561 40.000 0.00 0.00 0.00 2.52
4958 5391 5.855395 GCACTATTTCAACAGCAAGAAGAAG 59.145 40.000 0.00 0.00 0.00 2.85
4959 5392 6.293626 GCACTATTTCAACAGCAAGAAGAAGA 60.294 38.462 0.00 0.00 0.00 2.87
4960 5393 7.642669 CACTATTTCAACAGCAAGAAGAAGAA 58.357 34.615 0.00 0.00 0.00 2.52
4961 5394 7.802251 CACTATTTCAACAGCAAGAAGAAGAAG 59.198 37.037 0.00 0.00 0.00 2.85
5010 5561 0.401738 CAGGGTGCCCTCTCAAAAGA 59.598 55.000 6.84 0.00 46.28 2.52
5042 5596 5.932883 AGTTTCTTAGATTCAAAGGTCGTCC 59.067 40.000 0.00 0.00 0.00 4.79
5044 5598 2.953466 TAGATTCAAAGGTCGTCCGG 57.047 50.000 0.00 0.00 39.05 5.14
5097 5788 2.351726 CTGCTAAACCGCTGGTAATGAC 59.648 50.000 0.62 0.00 33.12 3.06
5129 5822 4.678287 TGAGACTGAAAACTAGCGTTAACG 59.322 41.667 23.40 23.40 43.27 3.18
5132 5825 3.423206 ACTGAAAACTAGCGTTAACGTCG 59.577 43.478 27.28 17.91 42.22 5.12
5144 5837 3.730715 CGTTAACGTCGTACCTGTTTCTT 59.269 43.478 19.75 0.00 34.11 2.52
5145 5838 4.374309 CGTTAACGTCGTACCTGTTTCTTG 60.374 45.833 19.75 0.00 34.11 3.02
5148 5841 1.712350 CGTCGTACCTGTTTCTTGTCG 59.288 52.381 0.00 0.00 0.00 4.35
5171 5864 5.252969 ACGGCTTCGTGTTAATATACTGA 57.747 39.130 0.00 0.00 46.32 3.41
5182 5875 5.878116 TGTTAATATACTGAGGCGCAACTTT 59.122 36.000 10.83 0.00 0.00 2.66
5186 5879 1.961793 ACTGAGGCGCAACTTTACAA 58.038 45.000 10.83 0.00 0.00 2.41
5199 5892 5.613812 CAACTTTACAAATCGCGTACATGA 58.386 37.500 5.77 0.00 0.00 3.07
5209 5902 6.946229 AATCGCGTACATGATTAGGATTAC 57.054 37.500 5.77 0.00 33.23 1.89
5212 5905 5.688621 TCGCGTACATGATTAGGATTACAAC 59.311 40.000 5.77 0.00 0.00 3.32
5245 5938 6.780031 CCAAGGGATAACAAGATAGAGAGAGA 59.220 42.308 0.00 0.00 0.00 3.10
5246 5939 7.039784 CCAAGGGATAACAAGATAGAGAGAGAG 60.040 44.444 0.00 0.00 0.00 3.20
5255 5948 8.588290 ACAAGATAGAGAGAGAGTTGTTACAT 57.412 34.615 0.00 0.00 0.00 2.29
5291 5984 3.799232 GCCAACAACCTAGCCTATCTACG 60.799 52.174 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.394712 CTCAAGAACGCCGCCCCT 62.395 66.667 0.00 0.00 0.00 4.79
5 6 2.536997 ATTCCCCCTCAAGAACGCCG 62.537 60.000 0.00 0.00 0.00 6.46
6 7 0.323451 AATTCCCCCTCAAGAACGCC 60.323 55.000 0.00 0.00 0.00 5.68
7 8 0.811281 CAATTCCCCCTCAAGAACGC 59.189 55.000 0.00 0.00 0.00 4.84
8 9 0.811281 GCAATTCCCCCTCAAGAACG 59.189 55.000 0.00 0.00 0.00 3.95
9 10 0.811281 CGCAATTCCCCCTCAAGAAC 59.189 55.000 0.00 0.00 0.00 3.01
10 11 0.404040 ACGCAATTCCCCCTCAAGAA 59.596 50.000 0.00 0.00 0.00 2.52
11 12 0.035439 GACGCAATTCCCCCTCAAGA 60.035 55.000 0.00 0.00 0.00 3.02
12 13 1.369091 CGACGCAATTCCCCCTCAAG 61.369 60.000 0.00 0.00 0.00 3.02
13 14 1.376683 CGACGCAATTCCCCCTCAA 60.377 57.895 0.00 0.00 0.00 3.02
14 15 2.119484 AACGACGCAATTCCCCCTCA 62.119 55.000 0.00 0.00 0.00 3.86
15 16 0.958876 AAACGACGCAATTCCCCCTC 60.959 55.000 0.00 0.00 0.00 4.30
16 17 0.538746 AAAACGACGCAATTCCCCCT 60.539 50.000 0.00 0.00 0.00 4.79
17 18 0.315886 AAAAACGACGCAATTCCCCC 59.684 50.000 0.00 0.00 0.00 5.40
18 19 3.877874 AAAAACGACGCAATTCCCC 57.122 47.368 0.00 0.00 0.00 4.81
33 34 0.465824 TCCCGCCGGTCAAAGAAAAA 60.466 50.000 1.90 0.00 0.00 1.94
34 35 0.465824 TTCCCGCCGGTCAAAGAAAA 60.466 50.000 1.90 0.00 0.00 2.29
35 36 0.887387 CTTCCCGCCGGTCAAAGAAA 60.887 55.000 1.90 0.00 0.00 2.52
36 37 1.302192 CTTCCCGCCGGTCAAAGAA 60.302 57.895 1.90 0.00 0.00 2.52
37 38 2.345991 CTTCCCGCCGGTCAAAGA 59.654 61.111 1.90 0.00 0.00 2.52
38 39 2.515996 TAGCTTCCCGCCGGTCAAAG 62.516 60.000 1.90 4.08 40.39 2.77
39 40 2.585341 TAGCTTCCCGCCGGTCAAA 61.585 57.895 1.90 0.00 40.39 2.69
40 41 2.998480 TAGCTTCCCGCCGGTCAA 60.998 61.111 1.90 0.00 40.39 3.18
41 42 3.766691 GTAGCTTCCCGCCGGTCA 61.767 66.667 1.90 0.00 40.39 4.02
42 43 4.867599 CGTAGCTTCCCGCCGGTC 62.868 72.222 1.90 0.00 40.39 4.79
44 45 4.446413 AACGTAGCTTCCCGCCGG 62.446 66.667 0.00 0.00 40.39 6.13
45 46 3.186047 CAACGTAGCTTCCCGCCG 61.186 66.667 0.00 0.00 40.39 6.46
46 47 1.670083 AACAACGTAGCTTCCCGCC 60.670 57.895 0.00 0.00 40.39 6.13
47 48 1.495951 CAACAACGTAGCTTCCCGC 59.504 57.895 0.00 0.00 39.57 6.13
48 49 1.495951 GCAACAACGTAGCTTCCCG 59.504 57.895 0.00 0.00 0.00 5.14
49 50 1.495951 CGCAACAACGTAGCTTCCC 59.504 57.895 0.00 0.00 0.00 3.97
50 51 0.947180 TCCGCAACAACGTAGCTTCC 60.947 55.000 0.00 0.00 0.00 3.46
51 52 0.863144 TTCCGCAACAACGTAGCTTC 59.137 50.000 0.00 0.00 0.00 3.86
52 53 0.865769 CTTCCGCAACAACGTAGCTT 59.134 50.000 0.00 0.00 0.00 3.74
53 54 0.032952 TCTTCCGCAACAACGTAGCT 59.967 50.000 0.00 0.00 0.00 3.32
54 55 0.163146 GTCTTCCGCAACAACGTAGC 59.837 55.000 0.00 0.00 0.00 3.58
55 56 1.493772 TGTCTTCCGCAACAACGTAG 58.506 50.000 0.00 0.00 0.00 3.51
56 57 1.862201 CTTGTCTTCCGCAACAACGTA 59.138 47.619 0.00 0.00 32.28 3.57
57 58 0.655733 CTTGTCTTCCGCAACAACGT 59.344 50.000 0.00 0.00 32.28 3.99
58 59 0.934496 TCTTGTCTTCCGCAACAACG 59.066 50.000 0.00 0.00 32.28 4.10
59 60 2.854805 GCTTCTTGTCTTCCGCAACAAC 60.855 50.000 0.00 0.00 32.28 3.32
60 61 1.333619 GCTTCTTGTCTTCCGCAACAA 59.666 47.619 0.00 0.00 34.41 2.83
61 62 0.944386 GCTTCTTGTCTTCCGCAACA 59.056 50.000 0.00 0.00 0.00 3.33
62 63 0.944386 TGCTTCTTGTCTTCCGCAAC 59.056 50.000 0.00 0.00 0.00 4.17
63 64 0.944386 GTGCTTCTTGTCTTCCGCAA 59.056 50.000 0.00 0.00 0.00 4.85
64 65 0.179059 TGTGCTTCTTGTCTTCCGCA 60.179 50.000 0.00 0.00 0.00 5.69
65 66 0.235926 GTGTGCTTCTTGTCTTCCGC 59.764 55.000 0.00 0.00 0.00 5.54
66 67 0.508641 CGTGTGCTTCTTGTCTTCCG 59.491 55.000 0.00 0.00 0.00 4.30
67 68 0.868406 CCGTGTGCTTCTTGTCTTCC 59.132 55.000 0.00 0.00 0.00 3.46
68 69 0.868406 CCCGTGTGCTTCTTGTCTTC 59.132 55.000 0.00 0.00 0.00 2.87
69 70 0.468226 TCCCGTGTGCTTCTTGTCTT 59.532 50.000 0.00 0.00 0.00 3.01
70 71 0.249911 GTCCCGTGTGCTTCTTGTCT 60.250 55.000 0.00 0.00 0.00 3.41
71 72 1.228657 GGTCCCGTGTGCTTCTTGTC 61.229 60.000 0.00 0.00 0.00 3.18
72 73 1.227853 GGTCCCGTGTGCTTCTTGT 60.228 57.895 0.00 0.00 0.00 3.16
73 74 1.227823 TGGTCCCGTGTGCTTCTTG 60.228 57.895 0.00 0.00 0.00 3.02
74 75 1.071471 CTGGTCCCGTGTGCTTCTT 59.929 57.895 0.00 0.00 0.00 2.52
75 76 1.194781 ATCTGGTCCCGTGTGCTTCT 61.195 55.000 0.00 0.00 0.00 2.85
76 77 0.741221 GATCTGGTCCCGTGTGCTTC 60.741 60.000 0.00 0.00 0.00 3.86
77 78 1.296715 GATCTGGTCCCGTGTGCTT 59.703 57.895 0.00 0.00 0.00 3.91
78 79 2.982130 GATCTGGTCCCGTGTGCT 59.018 61.111 0.00 0.00 0.00 4.40
79 80 2.501223 TTCGATCTGGTCCCGTGTGC 62.501 60.000 0.00 0.00 0.00 4.57
80 81 0.736325 GTTCGATCTGGTCCCGTGTG 60.736 60.000 0.00 0.00 0.00 3.82
81 82 1.590147 GTTCGATCTGGTCCCGTGT 59.410 57.895 0.00 0.00 0.00 4.49
82 83 1.516386 CGTTCGATCTGGTCCCGTG 60.516 63.158 0.00 0.00 0.00 4.94
83 84 2.707849 CCGTTCGATCTGGTCCCGT 61.708 63.158 0.00 0.00 0.00 5.28
84 85 2.104331 CCGTTCGATCTGGTCCCG 59.896 66.667 0.00 0.00 0.00 5.14
85 86 2.202892 GCCGTTCGATCTGGTCCC 60.203 66.667 0.00 0.00 0.00 4.46
86 87 1.519455 CAGCCGTTCGATCTGGTCC 60.519 63.158 0.00 0.00 0.00 4.46
87 88 0.103208 ATCAGCCGTTCGATCTGGTC 59.897 55.000 11.78 0.00 0.00 4.02
88 89 0.537188 AATCAGCCGTTCGATCTGGT 59.463 50.000 11.78 5.11 0.00 4.00
89 90 0.933097 CAATCAGCCGTTCGATCTGG 59.067 55.000 11.78 0.00 0.00 3.86
90 91 0.302890 GCAATCAGCCGTTCGATCTG 59.697 55.000 0.00 1.54 37.23 2.90
91 92 0.108186 TGCAATCAGCCGTTCGATCT 60.108 50.000 0.00 0.00 44.83 2.75
92 93 0.302890 CTGCAATCAGCCGTTCGATC 59.697 55.000 0.00 0.00 44.83 3.69
93 94 2.387309 CTGCAATCAGCCGTTCGAT 58.613 52.632 0.00 0.00 44.83 3.59
94 95 3.874873 CTGCAATCAGCCGTTCGA 58.125 55.556 0.00 0.00 44.83 3.71
103 104 1.372582 GACTGATTCGGCTGCAATCA 58.627 50.000 12.90 12.90 37.82 2.57
104 105 0.302890 CGACTGATTCGGCTGCAATC 59.697 55.000 0.50 3.86 44.60 2.67
105 106 2.387309 CGACTGATTCGGCTGCAAT 58.613 52.632 0.50 0.00 44.60 3.56
106 107 3.874873 CGACTGATTCGGCTGCAA 58.125 55.556 0.50 0.00 44.60 4.08
125 126 4.933064 GGGTCGATCGGAGCGCAG 62.933 72.222 16.41 0.00 44.16 5.18
127 128 4.508128 TTGGGTCGATCGGAGCGC 62.508 66.667 16.41 14.00 44.16 5.92
128 129 0.810031 AATTTGGGTCGATCGGAGCG 60.810 55.000 16.41 9.74 44.16 5.03
129 130 1.064060 CAAATTTGGGTCGATCGGAGC 59.936 52.381 16.41 11.28 42.48 4.70
130 131 1.670811 CCAAATTTGGGTCGATCGGAG 59.329 52.381 26.87 0.00 44.70 4.63
131 132 1.745232 CCAAATTTGGGTCGATCGGA 58.255 50.000 26.87 0.00 44.70 4.55
142 143 1.211709 GTCGGCCGACCCAAATTTG 59.788 57.895 41.88 11.40 39.08 2.32
143 144 3.676216 GTCGGCCGACCCAAATTT 58.324 55.556 41.88 0.00 39.08 1.82
158 159 2.668550 AAAAGGACAGCGCCGGTC 60.669 61.111 18.60 18.60 34.52 4.79
159 160 2.668550 GAAAAGGACAGCGCCGGT 60.669 61.111 2.29 1.82 0.00 5.28
160 161 3.788766 CGAAAAGGACAGCGCCGG 61.789 66.667 2.29 0.00 0.00 6.13
161 162 2.494504 GAACGAAAAGGACAGCGCCG 62.495 60.000 2.29 0.00 0.00 6.46
162 163 1.206831 GAACGAAAAGGACAGCGCC 59.793 57.895 2.29 0.00 0.00 6.53
163 164 1.154654 CGAACGAAAAGGACAGCGC 60.155 57.895 0.00 0.00 0.00 5.92
164 165 0.111266 CACGAACGAAAAGGACAGCG 60.111 55.000 0.14 0.00 0.00 5.18
165 166 0.384353 GCACGAACGAAAAGGACAGC 60.384 55.000 0.14 0.00 0.00 4.40
166 167 1.217882 AGCACGAACGAAAAGGACAG 58.782 50.000 0.14 0.00 0.00 3.51
167 168 1.658994 AAGCACGAACGAAAAGGACA 58.341 45.000 0.14 0.00 0.00 4.02
168 169 2.601504 GGAAAGCACGAACGAAAAGGAC 60.602 50.000 0.14 0.00 0.00 3.85
169 170 1.600485 GGAAAGCACGAACGAAAAGGA 59.400 47.619 0.14 0.00 0.00 3.36
170 171 1.602377 AGGAAAGCACGAACGAAAAGG 59.398 47.619 0.14 0.00 0.00 3.11
171 172 2.286833 TCAGGAAAGCACGAACGAAAAG 59.713 45.455 0.14 0.00 0.00 2.27
172 173 2.281517 TCAGGAAAGCACGAACGAAAA 58.718 42.857 0.14 0.00 0.00 2.29
173 174 1.864711 CTCAGGAAAGCACGAACGAAA 59.135 47.619 0.14 0.00 0.00 3.46
174 175 1.067974 TCTCAGGAAAGCACGAACGAA 59.932 47.619 0.14 0.00 0.00 3.85
175 176 0.671796 TCTCAGGAAAGCACGAACGA 59.328 50.000 0.14 0.00 0.00 3.85
176 177 1.063806 CTCTCAGGAAAGCACGAACG 58.936 55.000 0.00 0.00 0.00 3.95
177 178 0.793250 GCTCTCAGGAAAGCACGAAC 59.207 55.000 0.00 0.00 38.42 3.95
178 179 0.392706 TGCTCTCAGGAAAGCACGAA 59.607 50.000 0.00 0.00 43.30 3.85
179 180 2.049435 TGCTCTCAGGAAAGCACGA 58.951 52.632 0.00 0.00 43.30 4.35
180 181 4.681421 TGCTCTCAGGAAAGCACG 57.319 55.556 0.00 0.00 43.30 5.34
182 183 3.988976 ATACTTGCTCTCAGGAAAGCA 57.011 42.857 0.00 0.00 46.31 3.91
183 184 7.437748 TCTATTATACTTGCTCTCAGGAAAGC 58.562 38.462 0.00 0.00 39.02 3.51
184 185 7.598493 GCTCTATTATACTTGCTCTCAGGAAAG 59.402 40.741 0.00 0.00 0.00 2.62
185 186 7.288852 AGCTCTATTATACTTGCTCTCAGGAAA 59.711 37.037 0.00 0.00 0.00 3.13
186 187 6.780031 AGCTCTATTATACTTGCTCTCAGGAA 59.220 38.462 0.00 0.00 0.00 3.36
187 188 6.208402 CAGCTCTATTATACTTGCTCTCAGGA 59.792 42.308 0.00 0.00 0.00 3.86
188 189 6.208402 TCAGCTCTATTATACTTGCTCTCAGG 59.792 42.308 0.00 0.00 0.00 3.86
189 190 7.040478 AGTCAGCTCTATTATACTTGCTCTCAG 60.040 40.741 0.00 0.00 0.00 3.35
190 191 6.775142 AGTCAGCTCTATTATACTTGCTCTCA 59.225 38.462 0.00 0.00 0.00 3.27
191 192 7.040755 TGAGTCAGCTCTATTATACTTGCTCTC 60.041 40.741 0.00 0.00 42.13 3.20
192 193 6.775142 TGAGTCAGCTCTATTATACTTGCTCT 59.225 38.462 0.00 0.00 42.13 4.09
193 194 6.976088 TGAGTCAGCTCTATTATACTTGCTC 58.024 40.000 0.00 0.00 42.13 4.26
194 195 6.968263 TGAGTCAGCTCTATTATACTTGCT 57.032 37.500 0.00 0.00 42.13 3.91
210 211 1.000283 CCTTATAGCCCGCTGAGTCAG 60.000 57.143 16.21 16.21 34.12 3.51
211 212 1.040646 CCTTATAGCCCGCTGAGTCA 58.959 55.000 0.00 0.00 0.00 3.41
212 213 1.329256 TCCTTATAGCCCGCTGAGTC 58.671 55.000 0.00 0.00 0.00 3.36
213 214 1.789523 TTCCTTATAGCCCGCTGAGT 58.210 50.000 0.00 0.00 0.00 3.41
214 215 4.537135 TTATTCCTTATAGCCCGCTGAG 57.463 45.455 0.00 0.00 0.00 3.35
215 216 4.347000 AGTTTATTCCTTATAGCCCGCTGA 59.653 41.667 0.00 0.00 0.00 4.26
216 217 4.642429 AGTTTATTCCTTATAGCCCGCTG 58.358 43.478 0.00 0.00 0.00 5.18
217 218 4.976540 AGTTTATTCCTTATAGCCCGCT 57.023 40.909 0.00 0.00 0.00 5.52
218 219 5.791666 ACTAGTTTATTCCTTATAGCCCGC 58.208 41.667 0.00 0.00 0.00 6.13
236 237 8.643324 CCTCCAACTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
237 238 8.861086 TCCTCCAACTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
238 239 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
239 240 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
240 241 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
241 242 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
242 243 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
243 244 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
244 245 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
245 246 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
246 247 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
247 248 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
248 249 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
249 250 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
250 251 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
251 252 5.482175 TCCTCTTCTCTTTCCTCCAACTAAG 59.518 44.000 0.00 0.00 0.00 2.18
252 253 5.403512 TCCTCTTCTCTTTCCTCCAACTAA 58.596 41.667 0.00 0.00 0.00 2.24
253 254 5.011982 TCCTCTTCTCTTTCCTCCAACTA 57.988 43.478 0.00 0.00 0.00 2.24
254 255 3.837731 CTCCTCTTCTCTTTCCTCCAACT 59.162 47.826 0.00 0.00 0.00 3.16
255 256 3.835395 TCTCCTCTTCTCTTTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
256 257 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
257 258 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
258 259 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
259 260 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
260 261 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
261 262 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
262 263 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
263 264 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
264 265 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
265 266 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
266 267 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
267 268 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
268 269 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
269 270 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
270 271 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
271 272 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
272 273 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
273 274 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
274 275 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
275 276 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
276 277 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
277 278 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
278 279 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
279 280 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
280 281 0.249398 TGAAGAGCCCGCTTACCTTC 59.751 55.000 8.82 8.82 35.18 3.46
281 282 0.912486 ATGAAGAGCCCGCTTACCTT 59.088 50.000 0.00 0.00 0.00 3.50
282 283 0.179000 CATGAAGAGCCCGCTTACCT 59.821 55.000 0.00 0.00 0.00 3.08
283 284 0.178068 TCATGAAGAGCCCGCTTACC 59.822 55.000 0.00 0.00 0.00 2.85
284 285 1.936547 CTTCATGAAGAGCCCGCTTAC 59.063 52.381 28.13 0.00 40.79 2.34
285 286 1.831106 TCTTCATGAAGAGCCCGCTTA 59.169 47.619 30.05 8.62 42.06 3.09
286 287 0.615331 TCTTCATGAAGAGCCCGCTT 59.385 50.000 30.05 0.00 42.06 4.68
287 288 2.290847 TCTTCATGAAGAGCCCGCT 58.709 52.632 30.05 0.00 42.06 5.52
288 289 4.941609 TCTTCATGAAGAGCCCGC 57.058 55.556 30.05 0.00 42.06 6.13
294 295 3.430042 AAAGCTGGCTCTTCATGAAGA 57.570 42.857 31.10 31.10 44.47 2.87
295 296 3.065095 GCTAAAGCTGGCTCTTCATGAAG 59.935 47.826 26.56 26.56 37.65 3.02
296 297 3.012518 GCTAAAGCTGGCTCTTCATGAA 58.987 45.455 8.12 8.12 38.21 2.57
297 298 2.026915 TGCTAAAGCTGGCTCTTCATGA 60.027 45.455 3.26 0.00 42.66 3.07
298 299 2.097142 GTGCTAAAGCTGGCTCTTCATG 59.903 50.000 3.26 0.00 42.66 3.07
299 300 2.363683 GTGCTAAAGCTGGCTCTTCAT 58.636 47.619 3.26 0.00 42.66 2.57
300 301 1.813513 GTGCTAAAGCTGGCTCTTCA 58.186 50.000 3.26 0.00 42.66 3.02
301 302 0.723981 CGTGCTAAAGCTGGCTCTTC 59.276 55.000 3.26 0.00 42.66 2.87
302 303 0.035458 ACGTGCTAAAGCTGGCTCTT 59.965 50.000 3.26 0.00 42.66 2.85
303 304 0.671781 CACGTGCTAAAGCTGGCTCT 60.672 55.000 0.82 0.00 42.66 4.09
304 305 1.790387 CACGTGCTAAAGCTGGCTC 59.210 57.895 0.82 4.08 42.66 4.70
305 306 2.328099 GCACGTGCTAAAGCTGGCT 61.328 57.895 32.55 0.00 42.66 4.75
306 307 2.176792 GCACGTGCTAAAGCTGGC 59.823 61.111 32.55 1.87 42.66 4.85
316 317 0.038159 AAGTGACTAGGAGCACGTGC 60.038 55.000 32.79 32.79 39.88 5.34
317 318 2.061773 CAAAGTGACTAGGAGCACGTG 58.938 52.381 12.28 12.28 39.88 4.49
318 319 1.687123 ACAAAGTGACTAGGAGCACGT 59.313 47.619 0.00 0.00 39.88 4.49
319 320 2.061773 CACAAAGTGACTAGGAGCACG 58.938 52.381 0.00 0.00 39.88 5.34
320 321 3.005897 TCTCACAAAGTGACTAGGAGCAC 59.994 47.826 0.00 0.00 37.67 4.40
321 322 3.230976 TCTCACAAAGTGACTAGGAGCA 58.769 45.455 0.00 0.00 37.67 4.26
322 323 3.944055 TCTCACAAAGTGACTAGGAGC 57.056 47.619 0.00 0.00 37.67 4.70
323 324 6.030548 TCATTCTCACAAAGTGACTAGGAG 57.969 41.667 0.00 0.00 37.67 3.69
324 325 6.419484 TTCATTCTCACAAAGTGACTAGGA 57.581 37.500 0.00 0.00 37.67 2.94
325 326 6.148480 CCTTTCATTCTCACAAAGTGACTAGG 59.852 42.308 0.00 0.00 37.67 3.02
326 327 6.708054 ACCTTTCATTCTCACAAAGTGACTAG 59.292 38.462 0.00 0.00 37.67 2.57
327 328 6.483307 CACCTTTCATTCTCACAAAGTGACTA 59.517 38.462 0.00 0.00 37.67 2.59
328 329 5.297776 CACCTTTCATTCTCACAAAGTGACT 59.702 40.000 0.00 0.00 37.67 3.41
329 330 5.506317 CCACCTTTCATTCTCACAAAGTGAC 60.506 44.000 0.00 0.00 37.67 3.67
330 331 4.580167 CCACCTTTCATTCTCACAAAGTGA 59.420 41.667 0.00 0.00 40.50 3.41
331 332 4.261741 CCCACCTTTCATTCTCACAAAGTG 60.262 45.833 0.00 0.00 34.45 3.16
332 333 3.891366 CCCACCTTTCATTCTCACAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
333 334 3.891366 ACCCACCTTTCATTCTCACAAAG 59.109 43.478 0.00 0.00 0.00 2.77
334 335 3.888930 GACCCACCTTTCATTCTCACAAA 59.111 43.478 0.00 0.00 0.00 2.83
335 336 3.117701 TGACCCACCTTTCATTCTCACAA 60.118 43.478 0.00 0.00 0.00 3.33
336 337 2.441375 TGACCCACCTTTCATTCTCACA 59.559 45.455 0.00 0.00 0.00 3.58
337 338 2.814336 GTGACCCACCTTTCATTCTCAC 59.186 50.000 0.00 0.00 0.00 3.51
338 339 2.441375 TGTGACCCACCTTTCATTCTCA 59.559 45.455 0.00 0.00 32.73 3.27
339 340 3.140325 TGTGACCCACCTTTCATTCTC 57.860 47.619 0.00 0.00 32.73 2.87
340 341 3.814504 ATGTGACCCACCTTTCATTCT 57.185 42.857 0.00 0.00 32.73 2.40
341 342 7.639113 TTATTATGTGACCCACCTTTCATTC 57.361 36.000 0.00 0.00 32.73 2.67
342 343 9.707957 TTATTATTATGTGACCCACCTTTCATT 57.292 29.630 0.00 0.00 32.73 2.57
343 344 9.707957 TTTATTATTATGTGACCCACCTTTCAT 57.292 29.630 0.00 0.00 32.73 2.57
344 345 9.535170 TTTTATTATTATGTGACCCACCTTTCA 57.465 29.630 0.00 0.00 32.73 2.69
383 384 8.840321 GCCAACATGTACAATAGTAGATCAAAT 58.160 33.333 0.00 0.00 32.38 2.32
384 385 8.046708 AGCCAACATGTACAATAGTAGATCAAA 58.953 33.333 0.00 0.00 32.38 2.69
385 386 7.564793 AGCCAACATGTACAATAGTAGATCAA 58.435 34.615 0.00 0.00 32.38 2.57
386 387 7.124573 AGCCAACATGTACAATAGTAGATCA 57.875 36.000 0.00 0.00 32.38 2.92
392 393 9.494271 CATCTTATAGCCAACATGTACAATAGT 57.506 33.333 0.00 0.00 0.00 2.12
393 394 8.939929 CCATCTTATAGCCAACATGTACAATAG 58.060 37.037 0.00 0.00 0.00 1.73
394 395 7.882791 CCCATCTTATAGCCAACATGTACAATA 59.117 37.037 0.00 0.00 0.00 1.90
395 396 6.716628 CCCATCTTATAGCCAACATGTACAAT 59.283 38.462 0.00 0.00 0.00 2.71
396 397 6.061441 CCCATCTTATAGCCAACATGTACAA 58.939 40.000 0.00 0.00 0.00 2.41
397 398 5.620206 CCCATCTTATAGCCAACATGTACA 58.380 41.667 0.00 0.00 0.00 2.90
398 399 4.455877 GCCCATCTTATAGCCAACATGTAC 59.544 45.833 0.00 0.00 0.00 2.90
399 400 4.350816 AGCCCATCTTATAGCCAACATGTA 59.649 41.667 0.00 0.00 0.00 2.29
400 401 3.139025 AGCCCATCTTATAGCCAACATGT 59.861 43.478 0.00 0.00 0.00 3.21
401 402 3.504906 CAGCCCATCTTATAGCCAACATG 59.495 47.826 0.00 0.00 0.00 3.21
402 403 3.139025 ACAGCCCATCTTATAGCCAACAT 59.861 43.478 0.00 0.00 0.00 2.71
403 404 2.509548 ACAGCCCATCTTATAGCCAACA 59.490 45.455 0.00 0.00 0.00 3.33
404 405 3.214696 ACAGCCCATCTTATAGCCAAC 57.785 47.619 0.00 0.00 0.00 3.77
405 406 4.231273 TCTACAGCCCATCTTATAGCCAA 58.769 43.478 0.00 0.00 0.00 4.52
406 407 3.856900 TCTACAGCCCATCTTATAGCCA 58.143 45.455 0.00 0.00 0.00 4.75
407 408 4.467795 TCATCTACAGCCCATCTTATAGCC 59.532 45.833 0.00 0.00 0.00 3.93
408 409 5.047021 TGTCATCTACAGCCCATCTTATAGC 60.047 44.000 0.00 0.00 33.01 2.97
409 410 6.596309 TGTCATCTACAGCCCATCTTATAG 57.404 41.667 0.00 0.00 33.01 1.31
410 411 6.725834 TCATGTCATCTACAGCCCATCTTATA 59.274 38.462 0.00 0.00 42.70 0.98
411 412 5.545335 TCATGTCATCTACAGCCCATCTTAT 59.455 40.000 0.00 0.00 42.70 1.73
412 413 4.901250 TCATGTCATCTACAGCCCATCTTA 59.099 41.667 0.00 0.00 42.70 2.10
413 414 3.713248 TCATGTCATCTACAGCCCATCTT 59.287 43.478 0.00 0.00 42.70 2.40
414 415 3.070734 GTCATGTCATCTACAGCCCATCT 59.929 47.826 0.00 0.00 42.70 2.90
415 416 3.181462 TGTCATGTCATCTACAGCCCATC 60.181 47.826 0.00 0.00 42.70 3.51
416 417 2.773661 TGTCATGTCATCTACAGCCCAT 59.226 45.455 0.00 0.00 42.70 4.00
417 418 2.187100 TGTCATGTCATCTACAGCCCA 58.813 47.619 0.00 0.00 42.70 5.36
418 419 2.988010 TGTCATGTCATCTACAGCCC 57.012 50.000 0.00 0.00 42.70 5.19
419 420 5.605534 ACTAATGTCATGTCATCTACAGCC 58.394 41.667 5.90 0.00 42.70 4.85
420 421 7.065085 ACAAACTAATGTCATGTCATCTACAGC 59.935 37.037 5.90 0.00 42.70 4.40
421 422 8.484641 ACAAACTAATGTCATGTCATCTACAG 57.515 34.615 5.90 4.63 42.70 2.74
422 423 9.586435 CTACAAACTAATGTCATGTCATCTACA 57.414 33.333 5.90 0.00 37.33 2.74
423 424 8.543774 GCTACAAACTAATGTCATGTCATCTAC 58.456 37.037 5.90 0.00 34.75 2.59
424 425 7.710907 GGCTACAAACTAATGTCATGTCATCTA 59.289 37.037 5.90 1.59 34.75 1.98
425 426 6.540189 GGCTACAAACTAATGTCATGTCATCT 59.460 38.462 5.90 0.57 34.75 2.90
426 427 6.316140 TGGCTACAAACTAATGTCATGTCATC 59.684 38.462 5.90 0.00 34.75 2.92
427 428 6.179756 TGGCTACAAACTAATGTCATGTCAT 58.820 36.000 0.00 0.00 34.75 3.06
428 429 5.555966 TGGCTACAAACTAATGTCATGTCA 58.444 37.500 0.00 0.00 34.75 3.58
429 430 5.447818 GCTGGCTACAAACTAATGTCATGTC 60.448 44.000 0.00 0.00 34.75 3.06
430 431 4.396166 GCTGGCTACAAACTAATGTCATGT 59.604 41.667 0.00 0.00 34.75 3.21
431 432 4.395854 TGCTGGCTACAAACTAATGTCATG 59.604 41.667 0.00 0.00 34.75 3.07
432 433 4.588899 TGCTGGCTACAAACTAATGTCAT 58.411 39.130 0.00 0.00 34.75 3.06
433 434 4.002982 CTGCTGGCTACAAACTAATGTCA 58.997 43.478 0.00 0.00 34.75 3.58
434 435 3.181506 GCTGCTGGCTACAAACTAATGTC 60.182 47.826 0.00 0.00 38.06 3.06
435 436 2.749621 GCTGCTGGCTACAAACTAATGT 59.250 45.455 0.00 0.00 38.06 2.71
436 437 3.411415 GCTGCTGGCTACAAACTAATG 57.589 47.619 0.00 0.00 38.06 1.90
452 453 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
453 454 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
454 455 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
455 456 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
456 457 6.815641 CAGAGCATGGTTAATAGTATAGCCAG 59.184 42.308 0.00 2.11 39.18 4.85
457 458 6.496911 TCAGAGCATGGTTAATAGTATAGCCA 59.503 38.462 0.00 3.65 39.96 4.75
458 459 6.936279 TCAGAGCATGGTTAATAGTATAGCC 58.064 40.000 0.00 0.00 0.00 3.93
459 460 7.547370 CCTTCAGAGCATGGTTAATAGTATAGC 59.453 40.741 0.00 0.00 0.00 2.97
460 461 8.037758 CCCTTCAGAGCATGGTTAATAGTATAG 58.962 40.741 0.00 0.00 0.00 1.31
461 462 7.733047 TCCCTTCAGAGCATGGTTAATAGTATA 59.267 37.037 0.00 0.00 0.00 1.47
462 463 6.558775 TCCCTTCAGAGCATGGTTAATAGTAT 59.441 38.462 0.00 0.00 0.00 2.12
463 464 5.903010 TCCCTTCAGAGCATGGTTAATAGTA 59.097 40.000 0.00 0.00 0.00 1.82
464 465 4.721776 TCCCTTCAGAGCATGGTTAATAGT 59.278 41.667 0.00 0.00 0.00 2.12
465 466 5.296151 TCCCTTCAGAGCATGGTTAATAG 57.704 43.478 0.00 0.00 0.00 1.73
466 467 5.191722 ACTTCCCTTCAGAGCATGGTTAATA 59.808 40.000 0.00 0.00 0.00 0.98
467 468 4.018050 ACTTCCCTTCAGAGCATGGTTAAT 60.018 41.667 0.00 0.00 0.00 1.40
468 469 3.330701 ACTTCCCTTCAGAGCATGGTTAA 59.669 43.478 0.00 0.00 0.00 2.01
469 470 2.912956 ACTTCCCTTCAGAGCATGGTTA 59.087 45.455 0.00 0.00 0.00 2.85
470 471 1.707427 ACTTCCCTTCAGAGCATGGTT 59.293 47.619 0.00 0.00 0.00 3.67
471 472 1.280421 GACTTCCCTTCAGAGCATGGT 59.720 52.381 0.00 0.00 0.00 3.55
472 473 1.280133 TGACTTCCCTTCAGAGCATGG 59.720 52.381 0.00 0.00 0.00 3.66
473 474 2.354259 GTGACTTCCCTTCAGAGCATG 58.646 52.381 0.00 0.00 0.00 4.06
474 475 1.280421 GGTGACTTCCCTTCAGAGCAT 59.720 52.381 0.00 0.00 0.00 3.79
475 476 0.687354 GGTGACTTCCCTTCAGAGCA 59.313 55.000 0.00 0.00 0.00 4.26
476 477 0.980423 AGGTGACTTCCCTTCAGAGC 59.020 55.000 0.00 0.00 37.44 4.09
477 478 2.233431 CAGAGGTGACTTCCCTTCAGAG 59.767 54.545 0.00 0.00 44.43 3.35
478 479 2.158310 TCAGAGGTGACTTCCCTTCAGA 60.158 50.000 0.00 0.00 44.43 3.27
479 480 2.251818 TCAGAGGTGACTTCCCTTCAG 58.748 52.381 0.00 0.00 44.43 3.02
480 481 2.398754 TCAGAGGTGACTTCCCTTCA 57.601 50.000 0.00 0.00 44.43 3.02
490 491 1.546029 CCGAACTGATGTCAGAGGTGA 59.454 52.381 16.41 0.00 46.59 4.02
491 492 1.273606 ACCGAACTGATGTCAGAGGTG 59.726 52.381 16.41 5.25 46.59 4.00
492 493 1.633774 ACCGAACTGATGTCAGAGGT 58.366 50.000 16.41 16.82 46.59 3.85
493 494 2.611518 GAACCGAACTGATGTCAGAGG 58.388 52.381 16.41 16.29 46.59 3.69
494 495 2.611518 GGAACCGAACTGATGTCAGAG 58.388 52.381 16.41 7.30 46.59 3.35
495 496 1.067846 CGGAACCGAACTGATGTCAGA 60.068 52.381 16.41 0.00 43.38 3.27
496 497 1.350193 CGGAACCGAACTGATGTCAG 58.650 55.000 7.53 8.42 44.91 3.51
497 498 0.037697 CCGGAACCGAACTGATGTCA 60.038 55.000 15.07 0.00 42.83 3.58
498 499 1.359459 GCCGGAACCGAACTGATGTC 61.359 60.000 15.07 0.00 42.83 3.06
499 500 1.375523 GCCGGAACCGAACTGATGT 60.376 57.895 15.07 0.00 42.83 3.06
500 501 1.079127 AGCCGGAACCGAACTGATG 60.079 57.895 15.07 0.00 42.83 3.07
501 502 1.079127 CAGCCGGAACCGAACTGAT 60.079 57.895 22.23 2.21 42.07 2.90
502 503 2.342279 CAGCCGGAACCGAACTGA 59.658 61.111 22.23 0.00 42.07 3.41
503 504 3.423154 GCAGCCGGAACCGAACTG 61.423 66.667 22.32 22.32 42.24 3.16
504 505 3.469863 TTGCAGCCGGAACCGAACT 62.470 57.895 15.07 8.67 42.83 3.01
505 506 2.966309 CTTGCAGCCGGAACCGAAC 61.966 63.158 15.07 6.48 42.83 3.95
506 507 2.668212 CTTGCAGCCGGAACCGAA 60.668 61.111 15.07 0.00 42.83 4.30
507 508 4.697756 CCTTGCAGCCGGAACCGA 62.698 66.667 15.07 0.00 42.83 4.69
509 510 2.597510 AACCTTGCAGCCGGAACC 60.598 61.111 5.05 0.00 0.00 3.62
510 511 2.954611 GAACCTTGCAGCCGGAAC 59.045 61.111 5.05 0.00 0.00 3.62
511 512 2.668212 CGAACCTTGCAGCCGGAA 60.668 61.111 5.05 0.00 0.00 4.30
512 513 3.589654 CTCGAACCTTGCAGCCGGA 62.590 63.158 5.05 0.00 0.00 5.14
513 514 3.121030 CTCGAACCTTGCAGCCGG 61.121 66.667 0.00 0.00 0.00 6.13
514 515 3.121030 CCTCGAACCTTGCAGCCG 61.121 66.667 0.00 0.00 0.00 5.52
515 516 3.435186 GCCTCGAACCTTGCAGCC 61.435 66.667 0.00 0.00 0.00 4.85
516 517 3.793144 CGCCTCGAACCTTGCAGC 61.793 66.667 0.00 0.00 0.00 5.25
687 698 3.246463 GCTTCGATTCGATTTCCTTCTCC 59.754 47.826 9.96 0.00 35.23 3.71
893 912 7.543756 TCTCGAACCAAAATATTCAAATTCCC 58.456 34.615 0.00 0.00 0.00 3.97
968 989 1.277557 CCTCCAAGACAGGGACTCAAG 59.722 57.143 0.00 0.00 34.60 3.02
1003 1024 2.878991 CGACGGCGCAATCGAAGA 60.879 61.111 23.51 0.00 40.86 2.87
1195 1217 5.221244 GCTGACAAAAACCAGTAGACCATTT 60.221 40.000 0.00 0.00 33.19 2.32
1303 1330 5.334569 CGGTATCTTAAAACGGGGCATTATG 60.335 44.000 0.00 0.00 0.00 1.90
1466 1493 1.073897 GCCTCCCAAGAACTGCACT 59.926 57.895 0.00 0.00 0.00 4.40
1640 1667 4.342378 ACAGAAGTGCTCTTTAGTGACAGA 59.658 41.667 2.00 0.00 33.64 3.41
1699 1726 2.622942 GCAACAACAGAATCCACAGGAA 59.377 45.455 0.00 0.00 34.34 3.36
1700 1727 2.229792 GCAACAACAGAATCCACAGGA 58.770 47.619 0.00 0.00 35.55 3.86
1701 1728 1.955778 TGCAACAACAGAATCCACAGG 59.044 47.619 0.00 0.00 0.00 4.00
1702 1729 2.606308 GCTGCAACAACAGAATCCACAG 60.606 50.000 0.00 0.00 40.25 3.66
1703 1730 1.337703 GCTGCAACAACAGAATCCACA 59.662 47.619 0.00 0.00 40.25 4.17
1704 1731 1.337703 TGCTGCAACAACAGAATCCAC 59.662 47.619 0.00 0.00 40.25 4.02
1705 1732 1.610038 CTGCTGCAACAACAGAATCCA 59.390 47.619 3.02 0.00 40.25 3.41
1706 1733 1.881973 TCTGCTGCAACAACAGAATCC 59.118 47.619 3.02 0.00 40.25 3.01
1707 1734 3.631145 TTCTGCTGCAACAACAGAATC 57.369 42.857 13.92 0.00 40.26 2.52
1708 1735 4.038282 TGATTTCTGCTGCAACAACAGAAT 59.962 37.500 16.98 10.30 43.17 2.40
1709 1736 3.380954 TGATTTCTGCTGCAACAACAGAA 59.619 39.130 13.92 13.92 42.39 3.02
1710 1737 2.950975 TGATTTCTGCTGCAACAACAGA 59.049 40.909 3.02 4.73 40.25 3.41
1711 1738 3.358707 TGATTTCTGCTGCAACAACAG 57.641 42.857 3.02 0.00 40.80 3.16
1712 1739 5.416639 AGATATGATTTCTGCTGCAACAACA 59.583 36.000 3.02 1.45 0.00 3.33
1713 1740 5.888105 AGATATGATTTCTGCTGCAACAAC 58.112 37.500 3.02 0.00 0.00 3.32
1931 1973 6.258068 GTCAGGAAAATACCATGTAGCAGTAC 59.742 42.308 0.00 0.00 0.00 2.73
2278 2324 7.233632 AGAAGCATGCCATATCCATACTTTTA 58.766 34.615 15.66 0.00 28.96 1.52
2371 2417 5.633830 ACATGAAGCTCGTCAAATTGATT 57.366 34.783 0.00 0.00 0.00 2.57
2522 2568 7.029563 GGACTTTTGGTTAGAAGTTGCATATG 58.970 38.462 0.00 0.00 36.31 1.78
2581 2627 9.442047 AATTAGTAAGCTATATGTGCTTCATCC 57.558 33.333 17.26 7.88 46.39 3.51
2853 2899 0.107831 CTCGTTTGAGAACACCCCCA 59.892 55.000 0.00 0.00 45.57 4.96
3454 3500 7.598759 ACCAGATCTAACAATTACGTCCTAT 57.401 36.000 0.00 0.00 0.00 2.57
3760 3806 1.464376 CCTCCACAGTGTCACGTCCT 61.464 60.000 0.00 0.00 0.00 3.85
4002 4387 5.597806 CACCGGATAAGATTAGTAACAGCA 58.402 41.667 9.46 0.00 0.00 4.41
4114 4499 4.278310 TCATTGAACGGACTCCTAGATCA 58.722 43.478 0.00 0.00 0.00 2.92
4424 4809 5.530915 CCTATCATGGCCTCGAAAACAATTA 59.469 40.000 3.32 0.00 0.00 1.40
4574 4962 0.178990 AACCTCCTTTGGCAGTGGTC 60.179 55.000 7.54 0.00 29.80 4.02
4614 5002 5.076873 CCATTCAAAGAACTTAACCTCCCA 58.923 41.667 0.00 0.00 0.00 4.37
4616 5004 4.082190 GGCCATTCAAAGAACTTAACCTCC 60.082 45.833 0.00 0.00 0.00 4.30
4944 5377 5.469421 CAGTCATCTTCTTCTTCTTGCTGTT 59.531 40.000 0.00 0.00 0.00 3.16
4956 5389 1.209019 AGGCGATGCAGTCATCTTCTT 59.791 47.619 0.00 0.00 45.32 2.52
4957 5390 0.829333 AGGCGATGCAGTCATCTTCT 59.171 50.000 0.00 0.00 45.32 2.85
4958 5391 0.935898 CAGGCGATGCAGTCATCTTC 59.064 55.000 0.00 0.00 45.32 2.87
4959 5392 0.463295 CCAGGCGATGCAGTCATCTT 60.463 55.000 0.00 0.00 45.32 2.40
4960 5393 1.145598 CCAGGCGATGCAGTCATCT 59.854 57.895 0.00 0.00 45.32 2.90
4961 5394 1.890979 CCCAGGCGATGCAGTCATC 60.891 63.158 0.00 0.00 44.34 2.92
5010 5561 7.094032 CCTTTGAATCTAAGAAACTGGCATCTT 60.094 37.037 6.03 7.00 39.19 2.40
5042 5596 4.173256 GCCATTTGAAATTGTAGGAACCG 58.827 43.478 0.00 0.00 0.00 4.44
5044 5598 4.020662 TGGGCCATTTGAAATTGTAGGAAC 60.021 41.667 0.00 0.00 0.00 3.62
5097 5788 6.255453 GCTAGTTTTCAGTCTCAGCTAATCTG 59.745 42.308 0.00 0.00 44.21 2.90
5129 5822 2.723143 GTCGACAAGAAACAGGTACGAC 59.277 50.000 11.55 0.00 40.94 4.34
5132 5825 2.056577 CCGTCGACAAGAAACAGGTAC 58.943 52.381 17.16 0.00 0.00 3.34
5157 5850 4.809426 AGTTGCGCCTCAGTATATTAACAC 59.191 41.667 4.18 0.00 0.00 3.32
5168 5861 3.492313 GATTTGTAAAGTTGCGCCTCAG 58.508 45.455 4.18 0.00 0.00 3.35
5171 5864 1.401018 GCGATTTGTAAAGTTGCGCCT 60.401 47.619 4.18 0.00 33.09 5.52
5182 5875 5.834169 TCCTAATCATGTACGCGATTTGTA 58.166 37.500 15.93 0.00 33.90 2.41
5186 5879 6.452242 TGTAATCCTAATCATGTACGCGATT 58.548 36.000 15.93 12.58 35.97 3.34
5199 5892 5.321102 TGGCACACAAGTTGTAATCCTAAT 58.679 37.500 8.49 0.00 35.67 1.73
5245 5938 7.607991 GGCATATGGCTTATCTATGTAACAACT 59.392 37.037 21.32 0.00 44.01 3.16
5246 5939 7.390440 TGGCATATGGCTTATCTATGTAACAAC 59.610 37.037 27.41 0.00 44.01 3.32
5255 5948 5.070001 GGTTGTTGGCATATGGCTTATCTA 58.930 41.667 27.41 5.76 44.01 1.98
5262 5955 1.338020 GCTAGGTTGTTGGCATATGGC 59.662 52.381 21.76 21.76 43.74 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.