Multiple sequence alignment - TraesCS6D01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G188000 chr6D 100.000 5575 0 0 1 5575 255522220 255527794 0.000000e+00 10296.0
1 TraesCS6D01G188000 chr6D 85.120 1250 150 20 2367 3592 8647540 8646303 0.000000e+00 1245.0
2 TraesCS6D01G188000 chr6D 89.634 328 31 3 2366 2692 243903706 243904031 1.120000e-111 414.0
3 TraesCS6D01G188000 chr6B 94.629 1508 66 13 4072 5571 351345730 351344230 0.000000e+00 2322.0
4 TraesCS6D01G188000 chr6B 95.971 819 24 2 1557 2366 351347145 351346327 0.000000e+00 1321.0
5 TraesCS6D01G188000 chr6B 95.691 789 25 4 747 1533 351347913 351347132 0.000000e+00 1260.0
6 TraesCS6D01G188000 chr6B 93.200 500 24 7 3587 4078 351346335 351345838 0.000000e+00 726.0
7 TraesCS6D01G188000 chr6B 82.495 537 71 11 15 551 351357194 351356681 3.060000e-122 449.0
8 TraesCS6D01G188000 chr6B 89.017 173 18 1 555 726 351348233 351348061 4.380000e-51 213.0
9 TraesCS6D01G188000 chr1D 97.068 1228 27 3 2367 3586 193650691 193651917 0.000000e+00 2060.0
10 TraesCS6D01G188000 chr1D 85.959 1225 140 16 2387 3586 250236363 250235146 0.000000e+00 1280.0
11 TraesCS6D01G188000 chr1D 85.079 1260 147 26 2367 3599 460732373 460733618 0.000000e+00 1247.0
12 TraesCS6D01G188000 chr1D 84.848 429 50 6 2367 2783 427312104 427312529 8.640000e-113 418.0
13 TraesCS6D01G188000 chr2D 91.477 1232 76 11 2367 3586 109707394 109706180 0.000000e+00 1666.0
14 TraesCS6D01G188000 chr2D 82.771 1155 151 23 2361 3490 308022690 308023821 0.000000e+00 987.0
15 TraesCS6D01G188000 chr2D 93.004 243 16 1 3344 3586 185200132 185200373 2.470000e-93 353.0
16 TraesCS6D01G188000 chr2D 88.333 60 3 2 5086 5142 79387367 79387309 1.000000e-07 69.4
17 TraesCS6D01G188000 chr5A 89.708 1234 109 7 2367 3587 475457184 475458412 0.000000e+00 1559.0
18 TraesCS6D01G188000 chr5A 90.164 244 23 1 3344 3586 475457427 475457184 3.240000e-82 316.0
19 TraesCS6D01G188000 chr4B 83.127 1049 128 30 2550 3574 66100803 66101826 0.000000e+00 911.0
20 TraesCS6D01G188000 chr4B 83.075 969 128 24 2640 3587 66106754 66107707 0.000000e+00 848.0
21 TraesCS6D01G188000 chr7B 90.274 329 29 3 2365 2692 580882348 580882022 1.440000e-115 427.0
22 TraesCS6D01G188000 chr3D 90.154 325 29 3 2366 2689 520706420 520706742 2.400000e-113 420.0
23 TraesCS6D01G188000 chr3D 95.745 47 2 0 5096 5142 68395162 68395116 5.990000e-10 76.8
24 TraesCS6D01G188000 chr3D 88.710 62 5 1 5077 5138 586890091 586890032 2.150000e-09 75.0
25 TraesCS6D01G188000 chr5B 88.800 125 13 1 3764 3888 460223626 460223503 9.670000e-33 152.0
26 TraesCS6D01G188000 chr5B 88.000 50 6 0 605 654 422540412 422540363 6.030000e-05 60.2
27 TraesCS6D01G188000 chr4D 90.164 61 3 2 5079 5138 39405625 39405567 5.990000e-10 76.8
28 TraesCS6D01G188000 chr7A 92.453 53 2 1 5086 5138 56727743 56727793 2.150000e-09 75.0
29 TraesCS6D01G188000 chr7A 92.453 53 3 1 5097 5149 127585771 127585822 2.150000e-09 75.0
30 TraesCS6D01G188000 chr4A 92.453 53 1 2 5079 5131 679159149 679159198 7.750000e-09 73.1
31 TraesCS6D01G188000 chr2A 89.655 58 4 1 5072 5129 143275577 143275632 7.750000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G188000 chr6D 255522220 255527794 5574 False 10296.0 10296 100.0000 1 5575 1 chr6D.!!$F2 5574
1 TraesCS6D01G188000 chr6D 8646303 8647540 1237 True 1245.0 1245 85.1200 2367 3592 1 chr6D.!!$R1 1225
2 TraesCS6D01G188000 chr6B 351344230 351348233 4003 True 1168.4 2322 93.7016 555 5571 5 chr6B.!!$R2 5016
3 TraesCS6D01G188000 chr6B 351356681 351357194 513 True 449.0 449 82.4950 15 551 1 chr6B.!!$R1 536
4 TraesCS6D01G188000 chr1D 193650691 193651917 1226 False 2060.0 2060 97.0680 2367 3586 1 chr1D.!!$F1 1219
5 TraesCS6D01G188000 chr1D 250235146 250236363 1217 True 1280.0 1280 85.9590 2387 3586 1 chr1D.!!$R1 1199
6 TraesCS6D01G188000 chr1D 460732373 460733618 1245 False 1247.0 1247 85.0790 2367 3599 1 chr1D.!!$F3 1232
7 TraesCS6D01G188000 chr2D 109706180 109707394 1214 True 1666.0 1666 91.4770 2367 3586 1 chr2D.!!$R2 1219
8 TraesCS6D01G188000 chr2D 308022690 308023821 1131 False 987.0 987 82.7710 2361 3490 1 chr2D.!!$F2 1129
9 TraesCS6D01G188000 chr5A 475457184 475458412 1228 False 1559.0 1559 89.7080 2367 3587 1 chr5A.!!$F1 1220
10 TraesCS6D01G188000 chr4B 66100803 66101826 1023 False 911.0 911 83.1270 2550 3574 1 chr4B.!!$F1 1024
11 TraesCS6D01G188000 chr4B 66106754 66107707 953 False 848.0 848 83.0750 2640 3587 1 chr4B.!!$F2 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.107017 CCCCTCCGATTGCACATCTT 60.107 55.0 0.00 0.0 0.00 2.40 F
1003 1132 0.101219 GCGGAAATCTCCCACAATGC 59.899 55.0 0.00 0.0 38.71 3.56 F
1409 1538 0.599204 TTGTCCCACTCGTCGCTTTC 60.599 55.0 0.00 0.0 0.00 2.62 F
1420 1549 0.657368 GTCGCTTTCCGTTTGTGCTG 60.657 55.0 0.00 0.0 38.35 4.41 F
2217 2355 0.931005 GCTGCTACGTACATGCCTTC 59.069 55.0 3.18 0.0 0.00 3.46 F
3334 3568 0.641601 AGAAGGGAGGCAGAGAGGAT 59.358 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1950 0.033920 ACGGACGGTAAAGGTTCCAC 59.966 55.000 0.00 0.0 0.0 4.02 R
1913 2050 0.111061 TTCCAGTCATGTGCTTGCCT 59.889 50.000 0.00 0.0 0.0 4.75 R
3265 3488 0.533308 CAAACCCCGAAGTTCACCGA 60.533 55.000 3.32 0.0 0.0 4.69 R
3334 3568 3.909995 TGTCTCCTCCTCATTTCCTTCAA 59.090 43.478 0.00 0.0 0.0 2.69 R
3761 3999 0.621571 AGAGCCACCTTCCATAGCCA 60.622 55.000 0.00 0.0 0.0 4.75 R
5114 5475 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.396139 AACATGATGGGCAGCGGATT 60.396 50.000 0.00 0.00 0.00 3.01
35 36 1.302033 GATGGGCAGCGGATTCGAT 60.302 57.895 0.00 0.00 39.00 3.59
46 47 4.054671 AGCGGATTCGATTCAAAGATCTC 58.945 43.478 0.00 0.00 39.00 2.75
48 49 3.426859 CGGATTCGATTCAAAGATCTCCG 59.573 47.826 9.36 0.00 39.00 4.63
94 95 1.531840 GCTGCCCGAGGAGGAGATA 60.532 63.158 0.00 0.00 45.00 1.98
100 101 1.400737 CCGAGGAGGAGATAACCGTT 58.599 55.000 0.00 0.00 45.00 4.44
101 102 1.337387 CCGAGGAGGAGATAACCGTTC 59.663 57.143 0.00 0.00 45.00 3.95
103 104 2.022934 GAGGAGGAGATAACCGTTCGT 58.977 52.381 0.00 0.00 34.73 3.85
142 143 3.961414 GAGGGGTCCGCCAACCAA 61.961 66.667 1.51 0.00 41.40 3.67
143 144 3.920093 GAGGGGTCCGCCAACCAAG 62.920 68.421 1.51 0.00 41.40 3.61
145 146 4.280019 GGGTCCGCCAACCAAGGT 62.280 66.667 4.67 0.00 41.40 3.50
146 147 2.203437 GGTCCGCCAACCAAGGTT 60.203 61.111 0.00 0.00 39.27 3.50
157 158 2.474410 ACCAAGGTTGAACTCGATCC 57.526 50.000 0.00 0.00 0.00 3.36
158 159 1.337823 ACCAAGGTTGAACTCGATCCG 60.338 52.381 0.00 0.00 0.00 4.18
159 160 1.067142 CCAAGGTTGAACTCGATCCGA 60.067 52.381 0.00 0.00 0.00 4.55
160 161 2.418746 CCAAGGTTGAACTCGATCCGAT 60.419 50.000 0.00 0.00 34.61 4.18
161 162 2.586258 AGGTTGAACTCGATCCGATG 57.414 50.000 0.00 0.00 34.61 3.84
162 163 2.100197 AGGTTGAACTCGATCCGATGA 58.900 47.619 0.00 0.00 34.61 2.92
163 164 2.496070 AGGTTGAACTCGATCCGATGAA 59.504 45.455 0.00 0.00 34.61 2.57
164 165 3.056107 AGGTTGAACTCGATCCGATGAAA 60.056 43.478 0.00 0.00 34.61 2.69
165 166 3.682858 GGTTGAACTCGATCCGATGAAAA 59.317 43.478 0.00 0.00 34.61 2.29
166 167 4.332819 GGTTGAACTCGATCCGATGAAAAT 59.667 41.667 0.00 0.00 34.61 1.82
167 168 5.493735 GTTGAACTCGATCCGATGAAAATC 58.506 41.667 0.00 0.00 34.61 2.17
168 169 4.119862 TGAACTCGATCCGATGAAAATCC 58.880 43.478 0.00 0.00 34.61 3.01
169 170 3.819564 ACTCGATCCGATGAAAATCCA 57.180 42.857 0.00 0.00 34.61 3.41
170 171 4.342862 ACTCGATCCGATGAAAATCCAT 57.657 40.909 0.00 0.00 34.61 3.41
171 172 4.708177 ACTCGATCCGATGAAAATCCATT 58.292 39.130 0.00 0.00 34.61 3.16
172 173 4.512944 ACTCGATCCGATGAAAATCCATTG 59.487 41.667 0.00 0.00 34.61 2.82
173 174 3.250762 TCGATCCGATGAAAATCCATTGC 59.749 43.478 0.00 0.00 0.00 3.56
174 175 3.558505 GATCCGATGAAAATCCATTGCG 58.441 45.455 0.00 0.00 0.00 4.85
175 176 2.364632 TCCGATGAAAATCCATTGCGT 58.635 42.857 0.00 0.00 0.00 5.24
176 177 2.097304 TCCGATGAAAATCCATTGCGTG 59.903 45.455 0.00 0.00 0.00 5.34
177 178 2.159393 CCGATGAAAATCCATTGCGTGT 60.159 45.455 0.00 0.00 0.00 4.49
178 179 2.847717 CGATGAAAATCCATTGCGTGTG 59.152 45.455 0.00 0.00 0.00 3.82
179 180 3.670359 CGATGAAAATCCATTGCGTGTGT 60.670 43.478 0.00 0.00 0.00 3.72
180 181 3.010624 TGAAAATCCATTGCGTGTGTG 57.989 42.857 0.00 0.00 0.00 3.82
181 182 1.720852 GAAAATCCATTGCGTGTGTGC 59.279 47.619 0.00 0.00 0.00 4.57
182 183 0.672889 AAATCCATTGCGTGTGTGCA 59.327 45.000 0.00 0.00 44.61 4.57
188 189 3.519202 TGCGTGTGTGCAAATGGT 58.481 50.000 0.00 0.00 43.02 3.55
189 190 1.065436 TGCGTGTGTGCAAATGGTG 59.935 52.632 0.00 0.00 43.02 4.17
201 202 3.447918 CAAATGGTGCTTGGATCCATC 57.552 47.619 17.06 11.31 40.52 3.51
202 203 1.683943 AATGGTGCTTGGATCCATCG 58.316 50.000 17.06 11.17 40.52 3.84
203 204 0.179009 ATGGTGCTTGGATCCATCGG 60.179 55.000 17.06 10.19 37.38 4.18
204 205 1.526917 GGTGCTTGGATCCATCGGG 60.527 63.158 17.06 7.65 0.00 5.14
205 206 2.189499 GTGCTTGGATCCATCGGGC 61.189 63.158 17.06 17.11 0.00 6.13
206 207 2.595754 GCTTGGATCCATCGGGCC 60.596 66.667 17.06 0.00 0.00 5.80
207 208 3.125376 GCTTGGATCCATCGGGCCT 62.125 63.158 17.06 0.00 0.00 5.19
208 209 1.768684 GCTTGGATCCATCGGGCCTA 61.769 60.000 17.06 0.00 0.00 3.93
209 210 0.322975 CTTGGATCCATCGGGCCTAG 59.677 60.000 17.06 3.06 0.00 3.02
210 211 0.399949 TTGGATCCATCGGGCCTAGT 60.400 55.000 17.06 0.00 0.00 2.57
211 212 1.121407 TGGATCCATCGGGCCTAGTG 61.121 60.000 11.44 0.00 0.00 2.74
212 213 1.674057 GATCCATCGGGCCTAGTGG 59.326 63.158 0.84 8.64 0.00 4.00
254 255 2.740055 GCTGGTCACGGCTGTCTG 60.740 66.667 0.00 0.00 45.70 3.51
255 256 2.740055 CTGGTCACGGCTGTCTGC 60.740 66.667 0.00 0.00 41.94 4.26
292 293 2.046314 CAACGCAACCCCTCCGAT 60.046 61.111 0.00 0.00 0.00 4.18
293 294 1.674322 CAACGCAACCCCTCCGATT 60.674 57.895 0.00 0.00 0.00 3.34
294 295 1.674322 AACGCAACCCCTCCGATTG 60.674 57.895 0.00 0.00 0.00 2.67
295 296 3.508840 CGCAACCCCTCCGATTGC 61.509 66.667 0.00 0.00 44.21 3.56
296 297 2.361104 GCAACCCCTCCGATTGCA 60.361 61.111 3.42 0.00 46.37 4.08
297 298 2.700773 GCAACCCCTCCGATTGCAC 61.701 63.158 3.42 0.00 46.37 4.57
298 299 1.303236 CAACCCCTCCGATTGCACA 60.303 57.895 0.00 0.00 0.00 4.57
299 300 0.680921 CAACCCCTCCGATTGCACAT 60.681 55.000 0.00 0.00 0.00 3.21
300 301 0.394352 AACCCCTCCGATTGCACATC 60.394 55.000 0.00 0.00 0.00 3.06
301 302 1.274703 ACCCCTCCGATTGCACATCT 61.275 55.000 0.00 0.00 0.00 2.90
302 303 0.107017 CCCCTCCGATTGCACATCTT 60.107 55.000 0.00 0.00 0.00 2.40
303 304 1.303309 CCCTCCGATTGCACATCTTC 58.697 55.000 0.00 0.00 0.00 2.87
304 305 1.303309 CCTCCGATTGCACATCTTCC 58.697 55.000 0.00 0.00 0.00 3.46
305 306 1.303309 CTCCGATTGCACATCTTCCC 58.697 55.000 0.00 0.00 0.00 3.97
306 307 0.911769 TCCGATTGCACATCTTCCCT 59.088 50.000 0.00 0.00 0.00 4.20
307 308 1.019673 CCGATTGCACATCTTCCCTG 58.980 55.000 0.00 0.00 0.00 4.45
308 309 0.379669 CGATTGCACATCTTCCCTGC 59.620 55.000 0.00 0.00 0.00 4.85
309 310 0.379669 GATTGCACATCTTCCCTGCG 59.620 55.000 0.00 0.00 33.35 5.18
310 311 1.033746 ATTGCACATCTTCCCTGCGG 61.034 55.000 0.00 0.00 33.35 5.69
311 312 2.045926 GCACATCTTCCCTGCGGT 60.046 61.111 0.00 0.00 0.00 5.68
312 313 2.401766 GCACATCTTCCCTGCGGTG 61.402 63.158 0.00 0.00 0.00 4.94
313 314 2.045926 ACATCTTCCCTGCGGTGC 60.046 61.111 0.00 0.00 0.00 5.01
314 315 2.825836 CATCTTCCCTGCGGTGCC 60.826 66.667 0.00 0.00 0.00 5.01
315 316 3.329889 ATCTTCCCTGCGGTGCCA 61.330 61.111 0.00 0.00 0.00 4.92
316 317 3.335356 ATCTTCCCTGCGGTGCCAG 62.335 63.158 0.00 0.00 0.00 4.85
326 327 4.459089 GGTGCCAGGCTCCGACTC 62.459 72.222 16.91 0.00 32.56 3.36
327 328 3.695606 GTGCCAGGCTCCGACTCA 61.696 66.667 14.15 0.00 0.00 3.41
328 329 3.385384 TGCCAGGCTCCGACTCAG 61.385 66.667 14.15 0.00 0.00 3.35
329 330 3.071206 GCCAGGCTCCGACTCAGA 61.071 66.667 3.29 0.00 0.00 3.27
330 331 3.074999 GCCAGGCTCCGACTCAGAG 62.075 68.421 3.29 0.00 0.00 3.35
331 332 2.422231 CCAGGCTCCGACTCAGAGG 61.422 68.421 1.53 0.00 0.00 3.69
332 333 1.680651 CAGGCTCCGACTCAGAGGT 60.681 63.158 1.53 0.00 0.00 3.85
333 334 1.680651 AGGCTCCGACTCAGAGGTG 60.681 63.158 1.53 0.00 0.00 4.00
334 335 1.679305 GGCTCCGACTCAGAGGTGA 60.679 63.158 1.53 0.00 0.00 4.02
335 336 1.251527 GGCTCCGACTCAGAGGTGAA 61.252 60.000 1.53 0.00 30.14 3.18
336 337 0.109039 GCTCCGACTCAGAGGTGAAC 60.109 60.000 1.53 0.00 30.14 3.18
337 338 0.169230 CTCCGACTCAGAGGTGAACG 59.831 60.000 1.53 0.03 34.42 3.95
338 339 0.250597 TCCGACTCAGAGGTGAACGA 60.251 55.000 1.53 0.00 35.74 3.85
339 340 0.109689 CCGACTCAGAGGTGAACGAC 60.110 60.000 1.53 0.00 35.74 4.34
340 341 0.452950 CGACTCAGAGGTGAACGACG 60.453 60.000 1.53 0.00 35.74 5.12
341 342 0.873054 GACTCAGAGGTGAACGACGA 59.127 55.000 0.00 0.00 30.14 4.20
342 343 0.592148 ACTCAGAGGTGAACGACGAC 59.408 55.000 0.00 0.00 30.14 4.34
343 344 0.591659 CTCAGAGGTGAACGACGACA 59.408 55.000 0.00 0.00 30.14 4.35
344 345 1.200252 CTCAGAGGTGAACGACGACAT 59.800 52.381 0.00 0.00 30.14 3.06
345 346 1.068541 TCAGAGGTGAACGACGACATG 60.069 52.381 0.00 0.00 0.00 3.21
346 347 0.959553 AGAGGTGAACGACGACATGT 59.040 50.000 0.00 0.00 0.00 3.21
347 348 2.095415 CAGAGGTGAACGACGACATGTA 60.095 50.000 0.00 0.00 0.00 2.29
348 349 2.555325 AGAGGTGAACGACGACATGTAA 59.445 45.455 0.00 0.00 0.00 2.41
349 350 2.915463 GAGGTGAACGACGACATGTAAG 59.085 50.000 0.00 0.00 0.00 2.34
350 351 1.990563 GGTGAACGACGACATGTAAGG 59.009 52.381 0.00 0.00 0.00 2.69
351 352 2.608752 GGTGAACGACGACATGTAAGGT 60.609 50.000 0.00 0.00 0.00 3.50
352 353 2.660236 GTGAACGACGACATGTAAGGTC 59.340 50.000 0.00 6.22 45.66 3.85
361 362 3.746045 ACATGTAAGGTCACAACTCGT 57.254 42.857 0.00 0.00 30.84 4.18
362 363 4.067972 ACATGTAAGGTCACAACTCGTT 57.932 40.909 0.00 0.00 30.84 3.85
363 364 4.056050 ACATGTAAGGTCACAACTCGTTC 58.944 43.478 0.00 0.00 30.84 3.95
364 365 3.804786 TGTAAGGTCACAACTCGTTCA 57.195 42.857 0.00 0.00 0.00 3.18
365 366 4.126208 TGTAAGGTCACAACTCGTTCAA 57.874 40.909 0.00 0.00 0.00 2.69
366 367 4.699637 TGTAAGGTCACAACTCGTTCAAT 58.300 39.130 0.00 0.00 0.00 2.57
367 368 4.509970 TGTAAGGTCACAACTCGTTCAATG 59.490 41.667 0.00 0.00 0.00 2.82
368 369 3.194005 AGGTCACAACTCGTTCAATGT 57.806 42.857 0.00 0.00 0.00 2.71
369 370 4.330944 AGGTCACAACTCGTTCAATGTA 57.669 40.909 0.00 0.00 0.00 2.29
370 371 4.699637 AGGTCACAACTCGTTCAATGTAA 58.300 39.130 0.00 0.00 0.00 2.41
371 372 5.305585 AGGTCACAACTCGTTCAATGTAAT 58.694 37.500 0.00 0.00 0.00 1.89
372 373 6.460781 AGGTCACAACTCGTTCAATGTAATA 58.539 36.000 0.00 0.00 0.00 0.98
373 374 6.590292 AGGTCACAACTCGTTCAATGTAATAG 59.410 38.462 0.00 0.00 0.00 1.73
374 375 6.241385 GTCACAACTCGTTCAATGTAATAGC 58.759 40.000 0.00 0.00 0.00 2.97
375 376 5.061684 TCACAACTCGTTCAATGTAATAGCG 59.938 40.000 0.00 0.00 0.00 4.26
376 377 4.927425 ACAACTCGTTCAATGTAATAGCGT 59.073 37.500 0.00 0.00 0.00 5.07
377 378 5.163992 ACAACTCGTTCAATGTAATAGCGTG 60.164 40.000 0.00 0.00 0.00 5.34
378 379 3.863424 ACTCGTTCAATGTAATAGCGTGG 59.137 43.478 0.00 0.00 0.00 4.94
379 380 2.605818 TCGTTCAATGTAATAGCGTGGC 59.394 45.455 0.00 0.00 0.00 5.01
380 381 2.350192 CGTTCAATGTAATAGCGTGGCA 59.650 45.455 0.00 0.00 0.00 4.92
381 382 3.002246 CGTTCAATGTAATAGCGTGGCAT 59.998 43.478 0.00 0.00 0.00 4.40
382 383 4.282068 GTTCAATGTAATAGCGTGGCATG 58.718 43.478 1.31 1.31 0.00 4.06
383 384 2.290367 TCAATGTAATAGCGTGGCATGC 59.710 45.455 23.85 23.85 0.00 4.06
384 385 1.238439 ATGTAATAGCGTGGCATGCC 58.762 50.000 30.54 30.54 0.00 4.40
385 386 0.817634 TGTAATAGCGTGGCATGCCC 60.818 55.000 33.44 22.58 34.56 5.36
386 387 1.596752 TAATAGCGTGGCATGCCCG 60.597 57.895 33.44 32.12 35.87 6.13
396 397 4.529219 CATGCCCGCCGTGCTAGA 62.529 66.667 0.00 0.00 0.00 2.43
397 398 4.530857 ATGCCCGCCGTGCTAGAC 62.531 66.667 0.00 0.00 0.00 2.59
400 401 3.449227 CCCGCCGTGCTAGACAGA 61.449 66.667 0.00 0.00 0.00 3.41
401 402 2.202623 CCGCCGTGCTAGACAGAC 60.203 66.667 0.00 0.00 0.00 3.51
402 403 2.577112 CGCCGTGCTAGACAGACG 60.577 66.667 0.00 0.00 0.00 4.18
403 404 2.875485 GCCGTGCTAGACAGACGA 59.125 61.111 0.00 0.00 35.05 4.20
404 405 1.514443 GCCGTGCTAGACAGACGAC 60.514 63.158 0.00 0.00 35.05 4.34
405 406 1.226046 CCGTGCTAGACAGACGACG 60.226 63.158 0.00 0.00 35.05 5.12
406 407 1.863880 CGTGCTAGACAGACGACGC 60.864 63.158 0.00 0.00 35.05 5.19
407 408 1.863880 GTGCTAGACAGACGACGCG 60.864 63.158 3.53 3.53 0.00 6.01
408 409 2.030958 TGCTAGACAGACGACGCGA 61.031 57.895 15.93 0.00 0.00 5.87
409 410 1.297012 GCTAGACAGACGACGCGAG 60.297 63.158 15.93 9.24 0.00 5.03
410 411 1.694018 GCTAGACAGACGACGCGAGA 61.694 60.000 15.93 0.00 0.00 4.04
411 412 0.299300 CTAGACAGACGACGCGAGAG 59.701 60.000 15.93 5.82 0.00 3.20
412 413 1.082679 TAGACAGACGACGCGAGAGG 61.083 60.000 15.93 0.31 0.00 3.69
413 414 4.104417 ACAGACGACGCGAGAGGC 62.104 66.667 15.93 5.38 38.69 4.70
414 415 4.103103 CAGACGACGCGAGAGGCA 62.103 66.667 15.93 0.00 43.84 4.75
415 416 3.805307 AGACGACGCGAGAGGCAG 61.805 66.667 15.93 0.00 43.84 4.85
439 440 2.331805 CCGTCGTGGCCTAGATCG 59.668 66.667 3.32 9.60 0.00 3.69
440 441 2.353607 CGTCGTGGCCTAGATCGC 60.354 66.667 3.32 0.00 0.00 4.58
441 442 2.805546 GTCGTGGCCTAGATCGCA 59.194 61.111 3.32 0.00 0.00 5.10
442 443 1.299468 GTCGTGGCCTAGATCGCAG 60.299 63.158 3.32 0.00 0.00 5.18
443 444 1.453197 TCGTGGCCTAGATCGCAGA 60.453 57.895 3.32 0.00 45.75 4.26
444 445 1.007964 CGTGGCCTAGATCGCAGAG 60.008 63.158 3.32 0.00 43.63 3.35
445 446 1.365633 GTGGCCTAGATCGCAGAGG 59.634 63.158 3.32 1.15 43.63 3.69
463 464 3.906718 CGGAGTCGCTCACTACCT 58.093 61.111 8.71 0.00 34.41 3.08
464 465 1.722677 CGGAGTCGCTCACTACCTC 59.277 63.158 8.71 0.00 34.41 3.85
465 466 1.722677 GGAGTCGCTCACTACCTCG 59.277 63.158 8.71 0.00 34.41 4.63
466 467 1.716826 GGAGTCGCTCACTACCTCGG 61.717 65.000 8.71 0.00 34.41 4.63
467 468 0.743701 GAGTCGCTCACTACCTCGGA 60.744 60.000 2.53 0.00 34.41 4.55
468 469 0.745128 AGTCGCTCACTACCTCGGAG 60.745 60.000 0.00 0.00 31.37 4.63
469 470 1.025647 GTCGCTCACTACCTCGGAGT 61.026 60.000 4.02 0.00 0.00 3.85
470 471 1.025113 TCGCTCACTACCTCGGAGTG 61.025 60.000 4.02 0.00 44.75 3.51
472 473 1.668101 GCTCACTACCTCGGAGTGGG 61.668 65.000 4.02 1.74 46.91 4.61
473 474 0.323542 CTCACTACCTCGGAGTGGGT 60.324 60.000 4.02 0.00 46.91 4.51
474 475 0.611062 TCACTACCTCGGAGTGGGTG 60.611 60.000 4.02 9.16 46.91 4.61
475 476 0.611062 CACTACCTCGGAGTGGGTGA 60.611 60.000 4.02 0.00 46.91 4.02
476 477 0.611340 ACTACCTCGGAGTGGGTGAC 60.611 60.000 4.02 0.00 46.91 3.67
506 507 4.107051 GCGCCGCAAGCAAGTCAT 62.107 61.111 3.15 0.00 44.04 3.06
507 508 2.562912 CGCCGCAAGCAAGTCATT 59.437 55.556 0.00 0.00 44.04 2.57
508 509 1.798725 CGCCGCAAGCAAGTCATTG 60.799 57.895 0.00 0.00 44.04 2.82
509 510 1.580942 GCCGCAAGCAAGTCATTGA 59.419 52.632 0.00 0.00 42.97 2.57
510 511 0.171903 GCCGCAAGCAAGTCATTGAT 59.828 50.000 0.00 0.00 42.97 2.57
511 512 1.904144 CCGCAAGCAAGTCATTGATG 58.096 50.000 0.00 0.00 38.83 3.07
512 513 1.200716 CCGCAAGCAAGTCATTGATGT 59.799 47.619 0.00 0.00 38.83 3.06
513 514 2.247637 CGCAAGCAAGTCATTGATGTG 58.752 47.619 0.00 0.00 38.83 3.21
514 515 2.351060 CGCAAGCAAGTCATTGATGTGT 60.351 45.455 0.00 0.00 38.83 3.72
515 516 3.240069 GCAAGCAAGTCATTGATGTGTC 58.760 45.455 0.00 0.00 38.83 3.67
516 517 3.485633 CAAGCAAGTCATTGATGTGTCG 58.514 45.455 0.00 0.00 38.83 4.35
517 518 2.079158 AGCAAGTCATTGATGTGTCGG 58.921 47.619 0.00 0.00 38.83 4.79
518 519 1.131126 GCAAGTCATTGATGTGTCGGG 59.869 52.381 0.00 0.00 38.83 5.14
519 520 1.131126 CAAGTCATTGATGTGTCGGGC 59.869 52.381 0.00 0.00 38.83 6.13
520 521 0.615331 AGTCATTGATGTGTCGGGCT 59.385 50.000 0.00 0.00 0.00 5.19
521 522 1.009829 GTCATTGATGTGTCGGGCTC 58.990 55.000 0.00 0.00 0.00 4.70
522 523 0.107703 TCATTGATGTGTCGGGCTCC 60.108 55.000 0.00 0.00 0.00 4.70
551 552 1.456296 GGTTTATCGTGAACCCCACC 58.544 55.000 6.21 0.00 42.76 4.61
552 553 1.081094 GTTTATCGTGAACCCCACCG 58.919 55.000 0.00 0.00 42.76 4.94
553 554 0.674269 TTTATCGTGAACCCCACCGC 60.674 55.000 0.00 0.00 42.76 5.68
588 589 1.407979 TCGGACGAGAAAAGATAGGGC 59.592 52.381 0.00 0.00 0.00 5.19
592 593 3.134458 GACGAGAAAAGATAGGGCATGG 58.866 50.000 0.00 0.00 0.00 3.66
599 600 1.004440 GATAGGGCATGGGAGACGC 60.004 63.158 0.00 0.00 0.00 5.19
600 601 1.460305 ATAGGGCATGGGAGACGCT 60.460 57.895 0.00 0.00 0.00 5.07
601 602 1.476007 ATAGGGCATGGGAGACGCTC 61.476 60.000 0.00 0.00 0.00 5.03
618 619 2.125310 CGCGCCTTGTGTCCCATA 60.125 61.111 0.00 0.00 0.00 2.74
634 635 1.064463 CCATATGGGCCAGTCTGTGTT 60.064 52.381 13.78 0.00 0.00 3.32
641 642 2.076863 GGCCAGTCTGTGTTACATGTC 58.923 52.381 0.00 0.00 0.00 3.06
653 654 5.651139 TGTGTTACATGTCCTACTCTACCTC 59.349 44.000 0.00 0.00 0.00 3.85
663 665 1.752683 ACTCTACCTCGTCAGCGATT 58.247 50.000 0.00 0.00 46.80 3.34
668 670 0.179100 ACCTCGTCAGCGATTGGATG 60.179 55.000 2.98 0.00 46.80 3.51
679 681 1.731709 CGATTGGATGTTCACTTCGCA 59.268 47.619 0.00 0.00 0.00 5.10
688 690 1.996191 GTTCACTTCGCAGGTCTCATC 59.004 52.381 0.00 0.00 0.00 2.92
689 691 1.256812 TCACTTCGCAGGTCTCATCA 58.743 50.000 0.00 0.00 0.00 3.07
704 706 0.999406 CATCACCATCGAACACGGAC 59.001 55.000 0.00 0.00 0.00 4.79
712 714 1.081041 CGAACACGGACATGGACGA 60.081 57.895 16.56 0.00 0.00 4.20
726 728 1.070134 TGGACGAGAACAAGGACTTGG 59.930 52.381 15.72 1.14 44.45 3.61
728 730 2.610727 GGACGAGAACAAGGACTTGGAG 60.611 54.545 15.72 5.34 44.45 3.86
729 731 1.270358 ACGAGAACAAGGACTTGGAGC 60.270 52.381 15.72 5.28 44.45 4.70
730 732 1.433534 GAGAACAAGGACTTGGAGCG 58.566 55.000 15.72 0.00 44.45 5.03
731 733 1.000955 GAGAACAAGGACTTGGAGCGA 59.999 52.381 15.72 0.00 44.45 4.93
732 734 1.416401 AGAACAAGGACTTGGAGCGAA 59.584 47.619 15.72 0.00 44.45 4.70
733 735 1.801178 GAACAAGGACTTGGAGCGAAG 59.199 52.381 15.72 0.00 44.45 3.79
734 736 1.048601 ACAAGGACTTGGAGCGAAGA 58.951 50.000 15.72 0.00 44.45 2.87
736 738 2.832129 ACAAGGACTTGGAGCGAAGATA 59.168 45.455 15.72 0.00 44.45 1.98
737 739 3.190874 CAAGGACTTGGAGCGAAGATAC 58.809 50.000 4.15 0.00 36.95 2.24
738 740 2.457598 AGGACTTGGAGCGAAGATACA 58.542 47.619 0.00 0.00 0.00 2.29
739 741 3.034635 AGGACTTGGAGCGAAGATACAT 58.965 45.455 0.00 0.00 0.00 2.29
740 742 3.452627 AGGACTTGGAGCGAAGATACATT 59.547 43.478 0.00 0.00 0.00 2.71
743 745 4.950050 ACTTGGAGCGAAGATACATTAGG 58.050 43.478 0.00 0.00 0.00 2.69
744 746 4.202264 ACTTGGAGCGAAGATACATTAGGG 60.202 45.833 0.00 0.00 0.00 3.53
745 747 2.037251 TGGAGCGAAGATACATTAGGGC 59.963 50.000 0.00 0.00 0.00 5.19
747 749 3.580731 GAGCGAAGATACATTAGGGCTC 58.419 50.000 0.00 0.00 38.85 4.70
748 750 3.235200 AGCGAAGATACATTAGGGCTCT 58.765 45.455 0.00 0.00 0.00 4.09
749 751 4.408276 AGCGAAGATACATTAGGGCTCTA 58.592 43.478 0.00 0.00 0.00 2.43
751 753 4.924462 GCGAAGATACATTAGGGCTCTAAC 59.076 45.833 8.58 0.00 38.19 2.34
752 754 5.154932 CGAAGATACATTAGGGCTCTAACG 58.845 45.833 8.58 2.24 38.19 3.18
754 756 5.455056 AGATACATTAGGGCTCTAACGTG 57.545 43.478 15.16 10.08 38.19 4.49
755 757 2.311124 ACATTAGGGCTCTAACGTGC 57.689 50.000 8.58 0.00 38.19 5.34
756 758 1.553248 ACATTAGGGCTCTAACGTGCA 59.447 47.619 8.58 0.00 38.19 4.57
776 904 0.387929 ACAGACACGACGGTTGACAT 59.612 50.000 1.53 0.00 0.00 3.06
782 910 2.870372 GACGGTTGACATGGCAGC 59.130 61.111 6.90 6.90 0.00 5.25
887 1015 2.705826 CGCGCCTGCTCTGATTTC 59.294 61.111 0.00 0.00 39.65 2.17
954 1083 3.701542 CCTTTAAATTCTGCCCCCTTCTC 59.298 47.826 0.00 0.00 0.00 2.87
999 1128 2.267642 CCGCGGAAATCTCCCACA 59.732 61.111 24.07 0.00 38.71 4.17
1003 1132 0.101219 GCGGAAATCTCCCACAATGC 59.899 55.000 0.00 0.00 38.71 3.56
1005 1134 1.672881 CGGAAATCTCCCACAATGCTC 59.327 52.381 0.00 0.00 38.71 4.26
1034 1163 1.657822 GACCCAGAATCCTTCTTCGC 58.342 55.000 0.00 0.00 38.11 4.70
1097 1226 2.288030 GCACAAAGCTGCAAGAGTTCAT 60.288 45.455 1.02 0.00 41.15 2.57
1189 1318 1.987770 GCGAGTATTTCCGTCGAACAA 59.012 47.619 0.00 0.00 35.70 2.83
1397 1526 0.693049 GCCCTTCTCTTCTTGTCCCA 59.307 55.000 0.00 0.00 0.00 4.37
1409 1538 0.599204 TTGTCCCACTCGTCGCTTTC 60.599 55.000 0.00 0.00 0.00 2.62
1420 1549 0.657368 GTCGCTTTCCGTTTGTGCTG 60.657 55.000 0.00 0.00 38.35 4.41
1452 1581 1.200020 GAGGATGACAAAGGCCAAACG 59.800 52.381 5.01 0.00 0.00 3.60
1512 1641 3.422796 ACCATACTGCTCCGTATAGAGG 58.577 50.000 0.00 0.00 34.26 3.69
1514 1643 3.827302 CCATACTGCTCCGTATAGAGGTT 59.173 47.826 0.00 0.00 34.26 3.50
1515 1644 4.321304 CCATACTGCTCCGTATAGAGGTTG 60.321 50.000 0.00 0.00 34.26 3.77
1516 1645 1.409427 ACTGCTCCGTATAGAGGTTGC 59.591 52.381 0.00 7.45 34.26 4.17
1517 1646 1.409064 CTGCTCCGTATAGAGGTTGCA 59.591 52.381 12.75 12.75 37.57 4.08
1518 1647 2.036475 CTGCTCCGTATAGAGGTTGCAT 59.964 50.000 13.33 0.00 38.08 3.96
1519 1648 2.035961 TGCTCCGTATAGAGGTTGCATC 59.964 50.000 0.00 0.00 35.68 3.91
1520 1649 2.035961 GCTCCGTATAGAGGTTGCATCA 59.964 50.000 0.00 0.00 34.26 3.07
1521 1650 3.492656 GCTCCGTATAGAGGTTGCATCAA 60.493 47.826 0.00 0.00 34.26 2.57
1522 1651 4.800914 GCTCCGTATAGAGGTTGCATCAAT 60.801 45.833 0.00 0.00 34.26 2.57
1523 1652 5.290493 TCCGTATAGAGGTTGCATCAATT 57.710 39.130 0.00 0.00 0.00 2.32
1524 1653 6.413783 TCCGTATAGAGGTTGCATCAATTA 57.586 37.500 0.00 0.00 0.00 1.40
1525 1654 6.822442 TCCGTATAGAGGTTGCATCAATTAA 58.178 36.000 0.00 0.00 0.00 1.40
1526 1655 7.450074 TCCGTATAGAGGTTGCATCAATTAAT 58.550 34.615 0.00 0.00 0.00 1.40
1527 1656 7.602644 TCCGTATAGAGGTTGCATCAATTAATC 59.397 37.037 0.00 0.00 0.00 1.75
1528 1657 7.148407 CCGTATAGAGGTTGCATCAATTAATCC 60.148 40.741 0.00 0.00 0.00 3.01
1529 1658 6.808008 ATAGAGGTTGCATCAATTAATCCG 57.192 37.500 0.00 0.00 0.00 4.18
1530 1659 3.885297 AGAGGTTGCATCAATTAATCCGG 59.115 43.478 0.00 0.00 0.00 5.14
1531 1660 3.882888 GAGGTTGCATCAATTAATCCGGA 59.117 43.478 6.61 6.61 0.00 5.14
1532 1661 4.473444 AGGTTGCATCAATTAATCCGGAT 58.527 39.130 12.38 12.38 0.00 4.18
1533 1662 4.895297 AGGTTGCATCAATTAATCCGGATT 59.105 37.500 31.30 31.30 34.93 3.01
1534 1663 5.363580 AGGTTGCATCAATTAATCCGGATTT 59.636 36.000 33.43 15.26 32.50 2.17
1535 1664 6.048509 GGTTGCATCAATTAATCCGGATTTT 58.951 36.000 33.43 20.29 32.50 1.82
1536 1665 7.069331 AGGTTGCATCAATTAATCCGGATTTTA 59.931 33.333 33.43 21.88 32.50 1.52
1537 1666 7.382218 GGTTGCATCAATTAATCCGGATTTTAG 59.618 37.037 33.43 20.27 32.50 1.85
1538 1667 7.815840 TGCATCAATTAATCCGGATTTTAGA 57.184 32.000 33.43 24.13 32.50 2.10
1539 1668 8.231692 TGCATCAATTAATCCGGATTTTAGAA 57.768 30.769 33.43 21.74 32.50 2.10
1540 1669 8.690884 TGCATCAATTAATCCGGATTTTAGAAA 58.309 29.630 33.43 21.38 32.50 2.52
1541 1670 9.528018 GCATCAATTAATCCGGATTTTAGAAAA 57.472 29.630 33.43 20.68 32.50 2.29
1544 1673 9.469097 TCAATTAATCCGGATTTTAGAAAAGGA 57.531 29.630 33.43 18.40 32.50 3.36
1545 1674 9.736023 CAATTAATCCGGATTTTAGAAAAGGAG 57.264 33.333 33.43 11.19 32.50 3.69
1546 1675 7.875327 TTAATCCGGATTTTAGAAAAGGAGG 57.125 36.000 33.43 0.00 32.50 4.30
1547 1676 5.710409 ATCCGGATTTTAGAAAAGGAGGA 57.290 39.130 12.38 9.03 34.39 3.71
1548 1677 5.710409 TCCGGATTTTAGAAAAGGAGGAT 57.290 39.130 0.00 0.00 0.00 3.24
1549 1678 5.437060 TCCGGATTTTAGAAAAGGAGGATG 58.563 41.667 0.00 0.00 0.00 3.51
1550 1679 4.580580 CCGGATTTTAGAAAAGGAGGATGG 59.419 45.833 0.00 0.00 0.00 3.51
1551 1680 4.036852 CGGATTTTAGAAAAGGAGGATGGC 59.963 45.833 0.00 0.00 0.00 4.40
1552 1681 4.342378 GGATTTTAGAAAAGGAGGATGGCC 59.658 45.833 0.00 0.00 0.00 5.36
1553 1682 3.382083 TTTAGAAAAGGAGGATGGCCC 57.618 47.619 0.00 0.00 33.31 5.80
1554 1683 1.222567 TAGAAAAGGAGGATGGCCCC 58.777 55.000 0.00 0.00 34.66 5.80
1555 1684 1.075970 GAAAAGGAGGATGGCCCCC 60.076 63.158 0.00 0.66 34.66 5.40
1614 1743 1.902716 TTAAACGTGTGCCGCATCCG 61.903 55.000 11.66 11.66 41.42 4.18
1655 1784 1.863454 GAGAATGTCCATGTGCGCTAG 59.137 52.381 9.73 0.00 0.00 3.42
1667 1796 2.911143 CGCTAGGGCCCAGTTGAT 59.089 61.111 27.56 3.89 34.44 2.57
1677 1806 1.133253 CCAGTTGATGTCGCGCTTG 59.867 57.895 5.56 0.00 0.00 4.01
1821 1950 2.069273 CTGACCACGCCTCTTTTACTG 58.931 52.381 0.00 0.00 0.00 2.74
1898 2035 1.541147 CCAATGTCCGCTTGAACATGT 59.459 47.619 0.00 0.00 0.00 3.21
1911 2048 6.522761 GCTTGAACATGTAACTTACTACGTG 58.477 40.000 0.00 2.23 42.24 4.49
1913 2050 7.326789 GCTTGAACATGTAACTTACTACGTGTA 59.673 37.037 0.00 0.00 46.50 2.90
2055 2192 1.452651 CTCCACCGACGGTAGGCTA 60.453 63.158 21.25 7.80 32.11 3.93
2082 2220 9.747293 CCTGGCTACTAAGTTCTTAGTAATAAC 57.253 37.037 23.68 16.93 38.92 1.89
2117 2255 5.233225 CACTGAAGCAACTGATCTGAACTA 58.767 41.667 6.60 0.00 0.00 2.24
2217 2355 0.931005 GCTGCTACGTACATGCCTTC 59.069 55.000 3.18 0.00 0.00 3.46
2272 2410 4.602107 TGCCTGATGATTCATTCCTCAAA 58.398 39.130 0.00 0.00 29.90 2.69
2637 2776 7.418337 AACAATTGGGTCCCTATAAATGTTC 57.582 36.000 10.00 0.00 0.00 3.18
3334 3568 0.641601 AGAAGGGAGGCAGAGAGGAT 59.358 55.000 0.00 0.00 0.00 3.24
3609 3843 6.885376 TCTTTCCCTAGACTAGTCACTTACTG 59.115 42.308 24.44 8.44 39.39 2.74
3652 3886 1.596934 GCCGAGTCCCATCAGACAA 59.403 57.895 0.00 0.00 39.34 3.18
3673 3907 4.450082 ACCGTAAAGGAATCAATTTGGC 57.550 40.909 0.00 0.00 45.00 4.52
3761 3999 3.825328 ACTGACAAGTGAATTTCCTGCT 58.175 40.909 0.00 0.00 34.48 4.24
3771 4009 3.290710 GAATTTCCTGCTGGCTATGGAA 58.709 45.455 4.42 9.64 36.87 3.53
3816 4054 9.520204 CTCCAATTCACCACAATATTTGAATAC 57.480 33.333 11.63 0.00 37.64 1.89
3865 4103 9.875691 TGATAAGTGCTATATCACATACCAATC 57.124 33.333 9.26 0.00 39.35 2.67
3866 4104 9.875691 GATAAGTGCTATATCACATACCAATCA 57.124 33.333 9.26 0.00 39.35 2.57
3869 4107 8.383318 AGTGCTATATCACATACCAATCAAAC 57.617 34.615 9.26 0.00 39.35 2.93
3885 4123 6.589523 CCAATCAAACCAAATATTCGAAAGCA 59.410 34.615 0.00 0.00 0.00 3.91
3898 4136 3.887741 TCGAAAGCATGACACAACATTG 58.112 40.909 0.00 0.00 0.00 2.82
3930 4168 0.752658 TGAGGATGGTGGCTACATCG 59.247 55.000 1.52 0.00 44.34 3.84
3975 4213 1.742761 TGTTCTATCTTGCTGCAGCC 58.257 50.000 34.64 17.82 41.18 4.85
3978 4216 1.111277 TCTATCTTGCTGCAGCCGTA 58.889 50.000 34.64 20.07 41.18 4.02
4015 4253 2.291153 CCTTGGGATAGCATGGTATGGG 60.291 54.545 21.63 11.23 0.00 4.00
4028 4266 3.426615 TGGTATGGGTTTAAGCACTTGG 58.573 45.455 0.00 0.00 0.00 3.61
4089 4445 8.220755 ACTCTGCACAAGAATAAACTTTGTTA 57.779 30.769 0.00 0.00 33.37 2.41
4090 4446 8.850156 ACTCTGCACAAGAATAAACTTTGTTAT 58.150 29.630 0.00 0.00 33.37 1.89
4120 4476 6.368791 GCCTTAAACAGGGAATTTGATTGTTC 59.631 38.462 0.00 0.00 44.16 3.18
4160 4516 2.686835 GTCAGCTGGAGGCCCTCT 60.687 66.667 15.13 0.00 43.05 3.69
4195 4551 4.405358 TCAGTCAGGTTCCAAAAATGCTTT 59.595 37.500 0.00 0.00 0.00 3.51
4276 4633 7.579589 TTTTTATGCAATGGAAGAATGAACG 57.420 32.000 0.00 0.00 0.00 3.95
4291 4648 9.434559 GAAGAATGAACGCATTTTATACCTAAC 57.565 33.333 0.00 0.00 44.47 2.34
4370 4727 2.161211 GCAGCTGGAGACAAATTCAGAC 59.839 50.000 17.12 0.00 42.06 3.51
4389 4746 4.836125 GACATTCTTGTCCAGAAAGCAA 57.164 40.909 0.00 0.00 45.06 3.91
4424 4781 7.639039 TGAACAAGTACAAGATGAACATTGTC 58.361 34.615 0.00 0.00 40.09 3.18
4430 4787 2.479566 AGATGAACATTGTCGTGGCT 57.520 45.000 0.00 0.00 0.00 4.75
4454 4811 7.063780 GCTAATTTGCTTGCAACATACAAAGAT 59.936 33.333 7.60 9.84 34.08 2.40
4496 4853 1.473434 GGAGCAAGGAATACTGTCCGG 60.473 57.143 0.00 0.00 43.03 5.14
4498 4855 1.207329 AGCAAGGAATACTGTCCGGAC 59.793 52.381 28.17 28.17 43.03 4.79
4514 4871 1.130613 GACGCGCAACAGTGATGAC 59.869 57.895 5.73 0.00 0.00 3.06
4572 4929 8.292448 CACAGAAGCACTCAAAGTATATTTGTT 58.708 33.333 0.74 0.00 0.00 2.83
4601 4958 1.076549 GGATGCAACCAGGGTCCAA 59.923 57.895 8.36 0.00 0.00 3.53
4625 4982 7.907214 AACTGAATTATGACAAGTCTGTACC 57.093 36.000 1.53 0.00 35.30 3.34
4658 5015 4.652421 TGGCCTCGATACCTACAGTATTTT 59.348 41.667 3.32 0.00 41.94 1.82
4721 5078 6.051074 TGAATGTGAGCAATCACTATACCTG 58.949 40.000 9.57 0.00 40.97 4.00
4724 5081 6.538945 TGTGAGCAATCACTATACCTGTAA 57.461 37.500 9.57 0.00 40.97 2.41
4725 5082 7.124573 TGTGAGCAATCACTATACCTGTAAT 57.875 36.000 9.57 0.00 40.97 1.89
4744 5101 7.542477 CCTGTAATCTGTAATGATGTCGATACC 59.458 40.741 0.00 0.00 0.00 2.73
4813 5170 7.506938 AGAATTATGGGAAGGTGATACCAAATG 59.493 37.037 0.28 0.00 41.95 2.32
4832 5189 5.968676 AATGGGCCATCAACTACTACTAA 57.031 39.130 21.48 0.00 0.00 2.24
4834 5191 5.290493 TGGGCCATCAACTACTACTAATG 57.710 43.478 0.00 0.00 0.00 1.90
4862 5222 8.369218 AGCTTTGAGACCAAAACAAATAATTG 57.631 30.769 0.00 0.00 41.28 2.32
4863 5223 7.041848 AGCTTTGAGACCAAAACAAATAATTGC 60.042 33.333 0.00 0.00 41.28 3.56
4890 5250 9.800433 ATGTTAATTTATGAATGTCGAATGCAA 57.200 25.926 0.00 0.00 0.00 4.08
4913 5273 7.254932 GCAACAGTGTTTCTCTATTCAAGTTCT 60.255 37.037 5.57 0.00 0.00 3.01
4970 5330 6.380079 TTCTGGGCTTTTTAGAGAAGAGAT 57.620 37.500 0.00 0.00 0.00 2.75
5016 5377 6.569179 TGACTGGGTAACTATTTTTGCTTC 57.431 37.500 0.00 0.00 0.00 3.86
5040 5401 6.643770 TCGTAATGTCTCTGTTTGGTAAGAAC 59.356 38.462 0.00 0.00 0.00 3.01
5044 5405 7.823745 ATGTCTCTGTTTGGTAAGAACATTT 57.176 32.000 0.00 0.00 36.51 2.32
5050 5411 8.287439 TCTGTTTGGTAAGAACATTTCTCAAA 57.713 30.769 0.00 0.00 39.61 2.69
5074 5435 2.022195 CGAGAAATCGTACTCCCTCCA 58.978 52.381 0.00 0.00 0.00 3.86
5086 5447 2.590611 ACTCCCTCCATTGTACTCCCTA 59.409 50.000 0.00 0.00 0.00 3.53
5095 5456 8.656806 CCTCCATTGTACTCCCTATATTGTAAA 58.343 37.037 0.00 0.00 0.00 2.01
5122 5483 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
5130 5491 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
5281 5642 6.503589 TTCCATTACACCGTCTTTATTTGG 57.496 37.500 0.00 0.00 0.00 3.28
5284 5645 2.579410 ACACCGTCTTTATTTGGCCT 57.421 45.000 3.32 0.00 0.00 5.19
5317 5680 7.093245 TGCACTAGTTAGGATGTGGTAATACAA 60.093 37.037 0.00 0.00 33.69 2.41
5333 5696 9.005777 TGGTAATACAATTGGTCTAAGTTGTTC 57.994 33.333 10.83 0.00 36.34 3.18
5471 5834 7.804600 TCTCAAACGTTGAAAATGAGATTCATG 59.195 33.333 20.38 3.00 41.01 3.07
5473 5836 5.633830 ACGTTGAAAATGAGATTCATGCT 57.366 34.783 0.00 0.00 37.15 3.79
5543 5907 8.650714 GTTCAAAAGTTAGGCAATTTCATGATC 58.349 33.333 0.00 0.00 0.00 2.92
5549 5913 8.302515 AGTTAGGCAATTTCATGATCAATTCT 57.697 30.769 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.648059 CCCATCATGTTGGAGAAGGTC 58.352 52.381 22.13 0.00 39.25 3.85
3 4 1.341383 GCCCATCATGTTGGAGAAGGT 60.341 52.381 22.13 0.00 39.25 3.50
4 5 1.341285 TGCCCATCATGTTGGAGAAGG 60.341 52.381 22.13 7.79 39.25 3.46
5 6 2.022195 CTGCCCATCATGTTGGAGAAG 58.978 52.381 22.13 12.86 39.25 2.85
6 7 1.956636 GCTGCCCATCATGTTGGAGAA 60.957 52.381 22.13 7.82 39.25 2.87
7 8 0.394762 GCTGCCCATCATGTTGGAGA 60.395 55.000 22.13 8.54 39.25 3.71
8 9 1.721664 CGCTGCCCATCATGTTGGAG 61.722 60.000 22.13 14.00 39.25 3.86
9 10 1.750018 CGCTGCCCATCATGTTGGA 60.750 57.895 22.13 4.45 39.25 3.53
10 11 2.777972 CCGCTGCCCATCATGTTGG 61.778 63.158 14.90 14.90 36.46 3.77
11 12 1.105167 ATCCGCTGCCCATCATGTTG 61.105 55.000 0.00 0.00 0.00 3.33
12 13 0.396139 AATCCGCTGCCCATCATGTT 60.396 50.000 0.00 0.00 0.00 2.71
13 14 0.820891 GAATCCGCTGCCCATCATGT 60.821 55.000 0.00 0.00 0.00 3.21
31 32 5.243954 ACATATCCGGAGATCTTTGAATCGA 59.756 40.000 9.06 0.00 33.67 3.59
35 36 4.653801 TCCACATATCCGGAGATCTTTGAA 59.346 41.667 9.06 0.00 33.67 2.69
46 47 3.231818 AGGTCTTAGTCCACATATCCGG 58.768 50.000 0.00 0.00 0.00 5.14
48 49 3.890147 ACGAGGTCTTAGTCCACATATCC 59.110 47.826 0.00 0.00 0.00 2.59
94 95 0.175073 GGAGAGCCATACGAACGGTT 59.825 55.000 0.00 0.00 0.00 4.44
129 130 2.203437 AACCTTGGTTGGCGGACC 60.203 61.111 4.00 3.12 40.23 4.46
132 133 1.106944 AGTTCAACCTTGGTTGGCGG 61.107 55.000 26.35 6.92 35.23 6.13
134 135 0.310854 CGAGTTCAACCTTGGTTGGC 59.689 55.000 26.35 20.13 35.23 4.52
136 137 2.484264 GGATCGAGTTCAACCTTGGTTG 59.516 50.000 22.58 22.58 35.78 3.77
137 138 2.779506 GGATCGAGTTCAACCTTGGTT 58.220 47.619 0.00 0.00 0.00 3.67
138 139 1.337823 CGGATCGAGTTCAACCTTGGT 60.338 52.381 0.00 0.00 0.00 3.67
139 140 1.067142 TCGGATCGAGTTCAACCTTGG 60.067 52.381 0.00 0.00 0.00 3.61
140 141 2.363788 TCGGATCGAGTTCAACCTTG 57.636 50.000 0.00 0.00 0.00 3.61
141 142 2.496070 TCATCGGATCGAGTTCAACCTT 59.504 45.455 0.00 0.00 39.91 3.50
142 143 2.100197 TCATCGGATCGAGTTCAACCT 58.900 47.619 0.00 0.00 39.91 3.50
143 144 2.579207 TCATCGGATCGAGTTCAACC 57.421 50.000 0.00 0.00 39.91 3.77
144 145 4.921470 TTTTCATCGGATCGAGTTCAAC 57.079 40.909 0.00 0.00 39.91 3.18
145 146 4.570772 GGATTTTCATCGGATCGAGTTCAA 59.429 41.667 0.00 0.00 39.91 2.69
146 147 4.119862 GGATTTTCATCGGATCGAGTTCA 58.880 43.478 0.00 0.00 39.91 3.18
147 148 4.119862 TGGATTTTCATCGGATCGAGTTC 58.880 43.478 0.00 0.00 39.91 3.01
148 149 4.137116 TGGATTTTCATCGGATCGAGTT 57.863 40.909 0.00 0.00 39.91 3.01
149 150 3.819564 TGGATTTTCATCGGATCGAGT 57.180 42.857 0.00 0.00 39.91 4.18
150 151 4.612259 GCAATGGATTTTCATCGGATCGAG 60.612 45.833 0.00 0.00 39.91 4.04
151 152 3.250762 GCAATGGATTTTCATCGGATCGA 59.749 43.478 0.00 0.00 41.13 3.59
152 153 3.558505 GCAATGGATTTTCATCGGATCG 58.441 45.455 0.00 0.00 0.00 3.69
153 154 3.003689 ACGCAATGGATTTTCATCGGATC 59.996 43.478 0.00 0.00 0.00 3.36
154 155 2.951642 ACGCAATGGATTTTCATCGGAT 59.048 40.909 0.00 0.00 0.00 4.18
155 156 2.097304 CACGCAATGGATTTTCATCGGA 59.903 45.455 0.00 0.00 0.00 4.55
156 157 2.159393 ACACGCAATGGATTTTCATCGG 60.159 45.455 0.00 0.00 0.00 4.18
157 158 2.847717 CACACGCAATGGATTTTCATCG 59.152 45.455 0.00 0.00 0.00 3.84
158 159 3.609373 CACACACGCAATGGATTTTCATC 59.391 43.478 0.00 0.00 0.00 2.92
159 160 3.577667 CACACACGCAATGGATTTTCAT 58.422 40.909 0.00 0.00 0.00 2.57
160 161 2.861750 GCACACACGCAATGGATTTTCA 60.862 45.455 0.00 0.00 0.00 2.69
161 162 1.720852 GCACACACGCAATGGATTTTC 59.279 47.619 0.00 0.00 0.00 2.29
162 163 1.068281 TGCACACACGCAATGGATTTT 59.932 42.857 0.00 0.00 39.45 1.82
163 164 0.672889 TGCACACACGCAATGGATTT 59.327 45.000 0.00 0.00 39.45 2.17
164 165 0.672889 TTGCACACACGCAATGGATT 59.327 45.000 0.00 0.00 46.61 3.01
165 166 2.339403 TTGCACACACGCAATGGAT 58.661 47.368 0.00 0.00 46.61 3.41
166 167 3.833304 TTGCACACACGCAATGGA 58.167 50.000 0.00 0.00 46.61 3.41
171 172 1.065436 CACCATTTGCACACACGCA 59.935 52.632 0.00 0.00 41.03 5.24
172 173 3.920738 CACCATTTGCACACACGC 58.079 55.556 0.00 0.00 0.00 5.34
181 182 2.223641 CGATGGATCCAAGCACCATTTG 60.224 50.000 20.67 0.00 43.30 2.32
182 183 2.026641 CGATGGATCCAAGCACCATTT 58.973 47.619 20.67 0.00 43.30 2.32
183 184 1.683943 CGATGGATCCAAGCACCATT 58.316 50.000 20.67 0.00 43.30 3.16
184 185 0.179009 CCGATGGATCCAAGCACCAT 60.179 55.000 20.67 0.00 45.50 3.55
185 186 1.224315 CCGATGGATCCAAGCACCA 59.776 57.895 20.67 0.00 38.09 4.17
186 187 1.526917 CCCGATGGATCCAAGCACC 60.527 63.158 20.67 5.05 0.00 5.01
187 188 2.189499 GCCCGATGGATCCAAGCAC 61.189 63.158 20.67 9.75 0.00 4.40
188 189 2.192979 GCCCGATGGATCCAAGCA 59.807 61.111 20.67 0.00 0.00 3.91
189 190 1.768684 TAGGCCCGATGGATCCAAGC 61.769 60.000 20.67 18.29 0.00 4.01
190 191 0.322975 CTAGGCCCGATGGATCCAAG 59.677 60.000 20.67 15.68 0.00 3.61
191 192 0.399949 ACTAGGCCCGATGGATCCAA 60.400 55.000 20.67 1.96 0.00 3.53
192 193 1.121407 CACTAGGCCCGATGGATCCA 61.121 60.000 18.88 18.88 0.00 3.41
193 194 1.674057 CACTAGGCCCGATGGATCC 59.326 63.158 4.20 4.20 0.00 3.36
194 195 1.674057 CCACTAGGCCCGATGGATC 59.326 63.158 10.63 0.00 33.80 3.36
195 196 3.891817 CCACTAGGCCCGATGGAT 58.108 61.111 10.63 0.00 33.80 3.41
205 206 4.537433 GCGCCTCCAGCCACTAGG 62.537 72.222 0.00 0.00 38.78 3.02
206 207 4.880537 CGCGCCTCCAGCCACTAG 62.881 72.222 0.00 0.00 38.78 2.57
234 235 4.363990 ACAGCCGTGACCAGCGAG 62.364 66.667 0.00 0.00 0.00 5.03
235 236 4.357947 GACAGCCGTGACCAGCGA 62.358 66.667 0.00 0.00 0.00 4.93
236 237 4.363990 AGACAGCCGTGACCAGCG 62.364 66.667 0.00 0.00 0.00 5.18
237 238 2.740055 CAGACAGCCGTGACCAGC 60.740 66.667 0.00 0.00 0.00 4.85
238 239 2.740055 GCAGACAGCCGTGACCAG 60.740 66.667 0.00 0.00 37.23 4.00
275 276 1.674322 AATCGGAGGGGTTGCGTTG 60.674 57.895 0.00 0.00 41.84 4.10
276 277 1.674322 CAATCGGAGGGGTTGCGTT 60.674 57.895 0.00 0.00 41.84 4.84
277 278 2.046314 CAATCGGAGGGGTTGCGT 60.046 61.111 0.00 0.00 41.84 5.24
278 279 3.508840 GCAATCGGAGGGGTTGCG 61.509 66.667 0.00 0.00 42.61 4.85
279 280 2.361104 TGCAATCGGAGGGGTTGC 60.361 61.111 4.81 4.81 46.24 4.17
280 281 0.680921 ATGTGCAATCGGAGGGGTTG 60.681 55.000 0.00 0.00 0.00 3.77
281 282 0.394352 GATGTGCAATCGGAGGGGTT 60.394 55.000 0.00 0.00 0.00 4.11
282 283 1.224592 GATGTGCAATCGGAGGGGT 59.775 57.895 0.00 0.00 0.00 4.95
283 284 0.107017 AAGATGTGCAATCGGAGGGG 60.107 55.000 0.00 0.00 0.00 4.79
284 285 1.303309 GAAGATGTGCAATCGGAGGG 58.697 55.000 0.00 0.00 0.00 4.30
285 286 1.303309 GGAAGATGTGCAATCGGAGG 58.697 55.000 0.00 0.00 0.00 4.30
286 287 1.134280 AGGGAAGATGTGCAATCGGAG 60.134 52.381 0.00 0.00 0.00 4.63
287 288 0.911769 AGGGAAGATGTGCAATCGGA 59.088 50.000 0.00 0.00 0.00 4.55
288 289 1.019673 CAGGGAAGATGTGCAATCGG 58.980 55.000 0.00 0.00 0.00 4.18
289 290 0.379669 GCAGGGAAGATGTGCAATCG 59.620 55.000 0.00 0.00 37.16 3.34
290 291 0.379669 CGCAGGGAAGATGTGCAATC 59.620 55.000 0.00 0.00 37.01 2.67
291 292 2.485677 CGCAGGGAAGATGTGCAAT 58.514 52.632 0.00 0.00 37.01 3.56
292 293 3.985877 CGCAGGGAAGATGTGCAA 58.014 55.556 0.00 0.00 37.01 4.08
309 310 4.459089 GAGTCGGAGCCTGGCACC 62.459 72.222 23.40 23.40 35.99 5.01
310 311 3.655810 CTGAGTCGGAGCCTGGCAC 62.656 68.421 22.65 15.18 0.00 5.01
311 312 3.385384 CTGAGTCGGAGCCTGGCA 61.385 66.667 22.65 0.00 0.00 4.92
312 313 3.071206 TCTGAGTCGGAGCCTGGC 61.071 66.667 11.65 11.65 0.00 4.85
313 314 2.422231 CCTCTGAGTCGGAGCCTGG 61.422 68.421 21.76 6.99 35.69 4.45
314 315 1.680651 ACCTCTGAGTCGGAGCCTG 60.681 63.158 21.76 11.89 35.69 4.85
315 316 1.680651 CACCTCTGAGTCGGAGCCT 60.681 63.158 21.76 7.41 35.69 4.58
316 317 1.251527 TTCACCTCTGAGTCGGAGCC 61.252 60.000 21.76 0.00 35.69 4.70
317 318 0.109039 GTTCACCTCTGAGTCGGAGC 60.109 60.000 21.76 5.71 35.69 4.70
318 319 0.169230 CGTTCACCTCTGAGTCGGAG 59.831 60.000 20.46 20.46 36.69 4.63
319 320 0.250597 TCGTTCACCTCTGAGTCGGA 60.251 55.000 0.74 0.74 0.00 4.55
320 321 0.109689 GTCGTTCACCTCTGAGTCGG 60.110 60.000 3.66 0.00 0.00 4.79
321 322 0.452950 CGTCGTTCACCTCTGAGTCG 60.453 60.000 3.66 1.39 0.00 4.18
322 323 0.873054 TCGTCGTTCACCTCTGAGTC 59.127 55.000 3.66 0.00 0.00 3.36
323 324 0.592148 GTCGTCGTTCACCTCTGAGT 59.408 55.000 3.66 0.00 0.00 3.41
324 325 0.591659 TGTCGTCGTTCACCTCTGAG 59.408 55.000 0.00 0.00 0.00 3.35
325 326 1.068541 CATGTCGTCGTTCACCTCTGA 60.069 52.381 0.00 0.00 0.00 3.27
326 327 1.335964 ACATGTCGTCGTTCACCTCTG 60.336 52.381 0.00 0.00 0.00 3.35
327 328 0.959553 ACATGTCGTCGTTCACCTCT 59.040 50.000 0.00 0.00 0.00 3.69
328 329 2.624316 TACATGTCGTCGTTCACCTC 57.376 50.000 0.00 0.00 0.00 3.85
329 330 2.352421 CCTTACATGTCGTCGTTCACCT 60.352 50.000 0.00 0.00 0.00 4.00
330 331 1.990563 CCTTACATGTCGTCGTTCACC 59.009 52.381 0.00 0.00 0.00 4.02
331 332 2.660236 GACCTTACATGTCGTCGTTCAC 59.340 50.000 0.00 0.00 0.00 3.18
332 333 2.293955 TGACCTTACATGTCGTCGTTCA 59.706 45.455 0.00 0.00 35.46 3.18
333 334 2.660236 GTGACCTTACATGTCGTCGTTC 59.340 50.000 0.00 0.00 35.46 3.95
334 335 2.034939 TGTGACCTTACATGTCGTCGTT 59.965 45.455 0.00 0.00 35.46 3.85
335 336 1.610038 TGTGACCTTACATGTCGTCGT 59.390 47.619 0.00 0.00 35.46 4.34
336 337 2.341318 TGTGACCTTACATGTCGTCG 57.659 50.000 0.00 0.00 35.46 5.12
337 338 3.650139 AGTTGTGACCTTACATGTCGTC 58.350 45.455 0.00 7.64 35.46 4.20
338 339 3.650139 GAGTTGTGACCTTACATGTCGT 58.350 45.455 0.00 0.00 35.46 4.34
339 340 2.661675 CGAGTTGTGACCTTACATGTCG 59.338 50.000 0.00 0.00 35.46 4.35
340 341 3.650139 ACGAGTTGTGACCTTACATGTC 58.350 45.455 0.00 0.00 0.00 3.06
341 342 3.746045 ACGAGTTGTGACCTTACATGT 57.254 42.857 2.69 2.69 0.00 3.21
342 343 4.055360 TGAACGAGTTGTGACCTTACATG 58.945 43.478 0.00 0.00 0.00 3.21
343 344 4.330944 TGAACGAGTTGTGACCTTACAT 57.669 40.909 0.00 0.00 0.00 2.29
344 345 3.804786 TGAACGAGTTGTGACCTTACA 57.195 42.857 0.00 0.00 0.00 2.41
345 346 4.510340 ACATTGAACGAGTTGTGACCTTAC 59.490 41.667 0.00 0.00 0.00 2.34
346 347 4.699637 ACATTGAACGAGTTGTGACCTTA 58.300 39.130 0.00 0.00 0.00 2.69
347 348 3.541632 ACATTGAACGAGTTGTGACCTT 58.458 40.909 0.00 0.00 0.00 3.50
348 349 3.194005 ACATTGAACGAGTTGTGACCT 57.806 42.857 0.00 0.00 0.00 3.85
349 350 5.607119 ATTACATTGAACGAGTTGTGACC 57.393 39.130 0.00 0.00 0.00 4.02
350 351 6.241385 GCTATTACATTGAACGAGTTGTGAC 58.759 40.000 0.00 0.00 0.00 3.67
351 352 5.061684 CGCTATTACATTGAACGAGTTGTGA 59.938 40.000 0.00 0.00 0.00 3.58
352 353 5.163992 ACGCTATTACATTGAACGAGTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
353 354 4.927425 ACGCTATTACATTGAACGAGTTGT 59.073 37.500 0.00 0.00 0.00 3.32
354 355 5.248087 CACGCTATTACATTGAACGAGTTG 58.752 41.667 0.00 0.00 0.00 3.16
355 356 4.328983 CCACGCTATTACATTGAACGAGTT 59.671 41.667 0.00 0.00 0.00 3.01
356 357 3.863424 CCACGCTATTACATTGAACGAGT 59.137 43.478 0.00 0.00 0.00 4.18
357 358 3.302480 GCCACGCTATTACATTGAACGAG 60.302 47.826 0.00 0.00 0.00 4.18
358 359 2.605818 GCCACGCTATTACATTGAACGA 59.394 45.455 0.00 0.00 0.00 3.85
359 360 2.350192 TGCCACGCTATTACATTGAACG 59.650 45.455 0.00 0.00 0.00 3.95
360 361 4.282068 CATGCCACGCTATTACATTGAAC 58.718 43.478 0.00 0.00 0.00 3.18
361 362 3.243035 GCATGCCACGCTATTACATTGAA 60.243 43.478 6.36 0.00 0.00 2.69
362 363 2.290367 GCATGCCACGCTATTACATTGA 59.710 45.455 6.36 0.00 0.00 2.57
363 364 2.605338 GGCATGCCACGCTATTACATTG 60.605 50.000 32.08 0.00 35.81 2.82
364 365 1.608590 GGCATGCCACGCTATTACATT 59.391 47.619 32.08 0.00 35.81 2.71
365 366 1.238439 GGCATGCCACGCTATTACAT 58.762 50.000 32.08 0.00 35.81 2.29
366 367 0.817634 GGGCATGCCACGCTATTACA 60.818 55.000 36.56 0.00 37.98 2.41
367 368 1.841663 CGGGCATGCCACGCTATTAC 61.842 60.000 36.56 15.72 37.98 1.89
368 369 1.596752 CGGGCATGCCACGCTATTA 60.597 57.895 36.56 0.00 37.98 0.98
369 370 2.901840 CGGGCATGCCACGCTATT 60.902 61.111 36.56 0.00 37.98 1.73
379 380 4.529219 TCTAGCACGGCGGGCATG 62.529 66.667 37.36 26.71 0.00 4.06
380 381 4.530857 GTCTAGCACGGCGGGCAT 62.531 66.667 37.36 22.90 0.00 4.40
383 384 3.449227 TCTGTCTAGCACGGCGGG 61.449 66.667 13.24 8.95 0.00 6.13
384 385 2.202623 GTCTGTCTAGCACGGCGG 60.203 66.667 13.24 0.66 0.00 6.13
385 386 2.577112 CGTCTGTCTAGCACGGCG 60.577 66.667 4.80 4.80 0.00 6.46
386 387 1.514443 GTCGTCTGTCTAGCACGGC 60.514 63.158 0.00 0.00 34.24 5.68
387 388 1.226046 CGTCGTCTGTCTAGCACGG 60.226 63.158 0.00 0.78 34.24 4.94
388 389 1.863880 GCGTCGTCTGTCTAGCACG 60.864 63.158 0.00 0.00 34.78 5.34
389 390 1.863880 CGCGTCGTCTGTCTAGCAC 60.864 63.158 0.00 0.00 0.00 4.40
390 391 1.967597 CTCGCGTCGTCTGTCTAGCA 61.968 60.000 5.77 0.00 0.00 3.49
391 392 1.297012 CTCGCGTCGTCTGTCTAGC 60.297 63.158 5.77 0.00 0.00 3.42
392 393 0.299300 CTCTCGCGTCGTCTGTCTAG 59.701 60.000 5.77 0.00 0.00 2.43
393 394 1.082679 CCTCTCGCGTCGTCTGTCTA 61.083 60.000 5.77 0.00 0.00 2.59
394 395 2.392181 CCTCTCGCGTCGTCTGTCT 61.392 63.158 5.77 0.00 0.00 3.41
395 396 2.098680 CCTCTCGCGTCGTCTGTC 59.901 66.667 5.77 0.00 0.00 3.51
396 397 4.104417 GCCTCTCGCGTCGTCTGT 62.104 66.667 5.77 0.00 0.00 3.41
397 398 4.103103 TGCCTCTCGCGTCGTCTG 62.103 66.667 5.77 0.00 42.08 3.51
398 399 3.805307 CTGCCTCTCGCGTCGTCT 61.805 66.667 5.77 0.00 42.08 4.18
422 423 2.331805 CGATCTAGGCCACGACGG 59.668 66.667 5.01 0.00 38.11 4.79
423 424 2.353607 GCGATCTAGGCCACGACG 60.354 66.667 5.01 5.21 0.00 5.12
424 425 1.299468 CTGCGATCTAGGCCACGAC 60.299 63.158 5.01 0.44 0.00 4.34
425 426 1.448119 CTCTGCGATCTAGGCCACGA 61.448 60.000 5.01 0.00 0.00 4.35
426 427 1.007964 CTCTGCGATCTAGGCCACG 60.008 63.158 5.01 3.63 0.00 4.94
427 428 1.365633 CCTCTGCGATCTAGGCCAC 59.634 63.158 5.01 0.00 0.00 5.01
428 429 3.862142 CCTCTGCGATCTAGGCCA 58.138 61.111 5.01 0.00 0.00 5.36
446 447 1.722677 GAGGTAGTGAGCGACTCCG 59.277 63.158 4.73 0.00 35.96 4.63
447 448 1.716826 CCGAGGTAGTGAGCGACTCC 61.717 65.000 4.73 0.00 35.96 3.85
448 449 0.743701 TCCGAGGTAGTGAGCGACTC 60.744 60.000 0.00 0.00 35.96 3.36
449 450 0.745128 CTCCGAGGTAGTGAGCGACT 60.745 60.000 0.00 0.00 38.88 4.18
450 451 1.025647 ACTCCGAGGTAGTGAGCGAC 61.026 60.000 0.00 0.00 0.00 5.19
451 452 1.025113 CACTCCGAGGTAGTGAGCGA 61.025 60.000 13.01 0.00 45.89 4.93
452 453 1.429825 CACTCCGAGGTAGTGAGCG 59.570 63.158 13.01 0.00 45.89 5.03
453 454 1.668101 CCCACTCCGAGGTAGTGAGC 61.668 65.000 17.34 0.00 45.89 4.26
454 455 0.323542 ACCCACTCCGAGGTAGTGAG 60.324 60.000 17.34 10.53 45.89 3.51
455 456 0.611062 CACCCACTCCGAGGTAGTGA 60.611 60.000 17.34 0.00 45.89 3.41
456 457 0.611062 TCACCCACTCCGAGGTAGTG 60.611 60.000 0.00 11.96 43.26 2.74
457 458 0.611340 GTCACCCACTCCGAGGTAGT 60.611 60.000 0.00 0.00 33.52 2.73
458 459 1.321074 GGTCACCCACTCCGAGGTAG 61.321 65.000 0.00 0.00 33.52 3.18
459 460 1.304713 GGTCACCCACTCCGAGGTA 60.305 63.158 0.00 0.00 33.52 3.08
460 461 2.603776 GGTCACCCACTCCGAGGT 60.604 66.667 0.00 0.00 36.58 3.85
461 462 3.760035 CGGTCACCCACTCCGAGG 61.760 72.222 0.00 0.00 46.05 4.63
462 463 3.760035 CCGGTCACCCACTCCGAG 61.760 72.222 4.38 0.00 46.05 4.63
465 466 4.699522 GTGCCGGTCACCCACTCC 62.700 72.222 15.54 0.00 39.79 3.85
489 490 3.615536 AATGACTTGCTTGCGGCGC 62.616 57.895 27.44 27.44 45.43 6.53
490 491 1.798725 CAATGACTTGCTTGCGGCG 60.799 57.895 0.51 0.51 45.43 6.46
491 492 0.171903 ATCAATGACTTGCTTGCGGC 59.828 50.000 0.00 0.00 42.22 6.53
492 493 1.200716 ACATCAATGACTTGCTTGCGG 59.799 47.619 0.00 0.00 32.11 5.69
493 494 2.247637 CACATCAATGACTTGCTTGCG 58.752 47.619 0.00 0.00 32.11 4.85
494 495 3.240069 GACACATCAATGACTTGCTTGC 58.760 45.455 0.00 0.00 32.11 4.01
495 496 3.485633 CGACACATCAATGACTTGCTTG 58.514 45.455 0.00 0.00 32.11 4.01
496 497 2.485426 CCGACACATCAATGACTTGCTT 59.515 45.455 0.00 0.00 32.11 3.91
497 498 2.079158 CCGACACATCAATGACTTGCT 58.921 47.619 0.00 0.00 32.11 3.91
498 499 1.131126 CCCGACACATCAATGACTTGC 59.869 52.381 0.00 0.00 32.11 4.01
499 500 1.131126 GCCCGACACATCAATGACTTG 59.869 52.381 0.00 0.00 0.00 3.16
500 501 1.003580 AGCCCGACACATCAATGACTT 59.996 47.619 0.00 0.00 0.00 3.01
501 502 0.615331 AGCCCGACACATCAATGACT 59.385 50.000 0.00 0.00 0.00 3.41
502 503 1.009829 GAGCCCGACACATCAATGAC 58.990 55.000 0.00 0.00 0.00 3.06
503 504 0.107703 GGAGCCCGACACATCAATGA 60.108 55.000 0.00 0.00 0.00 2.57
504 505 2.397751 GGAGCCCGACACATCAATG 58.602 57.895 0.00 0.00 0.00 2.82
505 506 4.963878 GGAGCCCGACACATCAAT 57.036 55.556 0.00 0.00 0.00 2.57
532 533 1.456296 GGTGGGGTTCACGATAAACC 58.544 55.000 9.03 9.03 46.96 3.27
533 534 1.081094 CGGTGGGGTTCACGATAAAC 58.919 55.000 0.00 0.00 46.96 2.01
534 535 0.674269 GCGGTGGGGTTCACGATAAA 60.674 55.000 0.00 0.00 46.96 1.40
535 536 1.078988 GCGGTGGGGTTCACGATAA 60.079 57.895 0.00 0.00 46.96 1.75
536 537 1.952102 GAGCGGTGGGGTTCACGATA 61.952 60.000 0.00 0.00 46.96 2.92
537 538 3.310860 GAGCGGTGGGGTTCACGAT 62.311 63.158 0.00 0.00 46.96 3.73
538 539 3.998672 GAGCGGTGGGGTTCACGA 61.999 66.667 0.00 0.00 46.96 4.35
540 541 3.934391 CTCGAGCGGTGGGGTTCAC 62.934 68.421 0.00 0.00 45.34 3.18
541 542 3.691342 CTCGAGCGGTGGGGTTCA 61.691 66.667 0.00 0.00 0.00 3.18
542 543 4.452733 CCTCGAGCGGTGGGGTTC 62.453 72.222 6.99 0.00 0.00 3.62
548 549 4.457496 ATGTGGCCTCGAGCGGTG 62.457 66.667 6.99 0.00 45.17 4.94
549 550 4.457496 CATGTGGCCTCGAGCGGT 62.457 66.667 6.99 0.00 45.17 5.68
551 552 4.827087 AGCATGTGGCCTCGAGCG 62.827 66.667 6.99 1.35 46.50 5.03
552 553 2.894387 GAGCATGTGGCCTCGAGC 60.894 66.667 6.99 8.81 46.50 5.03
553 554 2.584418 CGAGCATGTGGCCTCGAG 60.584 66.667 13.26 5.13 46.50 4.04
599 600 4.680237 TGGGACACAAGGCGCGAG 62.680 66.667 12.10 0.00 0.00 5.03
614 615 0.548031 ACACAGACTGGCCCATATGG 59.452 55.000 15.41 15.41 37.09 2.74
618 619 1.064003 TGTAACACAGACTGGCCCAT 58.936 50.000 7.51 0.00 0.00 4.00
623 624 3.685139 AGGACATGTAACACAGACTGG 57.315 47.619 7.51 0.00 0.00 4.00
634 635 4.162888 TGACGAGGTAGAGTAGGACATGTA 59.837 45.833 0.00 0.00 0.00 2.29
641 642 0.938713 CGCTGACGAGGTAGAGTAGG 59.061 60.000 0.00 0.00 43.93 3.18
653 654 1.061131 GTGAACATCCAATCGCTGACG 59.939 52.381 0.00 0.00 42.01 4.35
663 665 0.396435 ACCTGCGAAGTGAACATCCA 59.604 50.000 0.00 0.00 0.00 3.41
668 670 1.996191 GATGAGACCTGCGAAGTGAAC 59.004 52.381 0.00 0.00 0.00 3.18
679 681 2.093973 GTGTTCGATGGTGATGAGACCT 60.094 50.000 0.00 0.00 36.88 3.85
688 690 0.721154 CATGTCCGTGTTCGATGGTG 59.279 55.000 0.00 0.00 39.71 4.17
689 691 0.391130 CCATGTCCGTGTTCGATGGT 60.391 55.000 0.00 0.00 39.71 3.55
704 706 2.738846 CAAGTCCTTGTTCTCGTCCATG 59.261 50.000 0.00 0.00 35.92 3.66
712 714 1.048601 TCGCTCCAAGTCCTTGTTCT 58.951 50.000 6.31 0.00 38.85 3.01
726 728 3.257127 AGAGCCCTAATGTATCTTCGCTC 59.743 47.826 0.00 0.00 41.37 5.03
728 730 3.669251 AGAGCCCTAATGTATCTTCGC 57.331 47.619 0.00 0.00 0.00 4.70
729 731 5.154932 CGTTAGAGCCCTAATGTATCTTCG 58.845 45.833 0.00 0.00 37.23 3.79
737 739 2.309528 TGCACGTTAGAGCCCTAATG 57.690 50.000 5.71 5.71 43.92 1.90
738 740 2.027561 TGTTGCACGTTAGAGCCCTAAT 60.028 45.455 0.00 0.00 37.23 1.73
739 741 1.345089 TGTTGCACGTTAGAGCCCTAA 59.655 47.619 0.00 0.00 32.84 2.69
740 742 0.970640 TGTTGCACGTTAGAGCCCTA 59.029 50.000 0.00 0.00 32.84 3.53
743 745 0.790814 GTCTGTTGCACGTTAGAGCC 59.209 55.000 0.00 0.00 32.84 4.70
744 746 1.192534 GTGTCTGTTGCACGTTAGAGC 59.807 52.381 0.00 0.00 34.46 4.09
752 754 1.426041 AACCGTCGTGTCTGTTGCAC 61.426 55.000 0.00 0.00 0.00 4.57
754 756 1.149361 TCAACCGTCGTGTCTGTTGC 61.149 55.000 6.47 0.00 38.32 4.17
755 757 0.575390 GTCAACCGTCGTGTCTGTTG 59.425 55.000 5.31 5.31 39.47 3.33
756 758 0.173935 TGTCAACCGTCGTGTCTGTT 59.826 50.000 0.00 0.00 0.00 3.16
1097 1226 2.923426 GATGATGGAGTTGCGGGCGA 62.923 60.000 0.00 0.00 0.00 5.54
1189 1318 3.818982 GAGTCACACGCACGTCGGT 62.819 63.158 11.13 0.00 43.86 4.69
1210 1339 2.091112 CACAAGCAGAGGAGCGTCG 61.091 63.158 0.00 0.00 40.15 5.12
1314 1443 2.494471 TGAAGTTGTCGATGTACCGGAT 59.506 45.455 9.46 0.00 0.00 4.18
1355 1484 3.602483 GTTAATTTACTCGGTGGAGGCA 58.398 45.455 0.00 0.00 44.93 4.75
1397 1526 0.529119 ACAAACGGAAAGCGACGAGT 60.529 50.000 0.00 0.00 0.00 4.18
1409 1538 0.238289 CAAGTAGGCAGCACAAACGG 59.762 55.000 0.00 0.00 0.00 4.44
1420 1549 2.028112 TGTCATCCTCACACAAGTAGGC 60.028 50.000 0.00 0.00 0.00 3.93
1452 1581 1.873698 TCCGTTGTAGTTGAGTTGCC 58.126 50.000 0.00 0.00 0.00 4.52
1492 1621 3.422796 ACCTCTATACGGAGCAGTATGG 58.577 50.000 8.99 6.82 37.80 2.74
1512 1641 8.134895 TCTAAAATCCGGATTAATTGATGCAAC 58.865 33.333 29.42 0.00 0.00 4.17
1514 1643 7.815840 TCTAAAATCCGGATTAATTGATGCA 57.184 32.000 29.42 5.61 0.00 3.96
1515 1644 9.528018 TTTTCTAAAATCCGGATTAATTGATGC 57.472 29.630 29.42 0.00 0.00 3.91
1518 1647 9.469097 TCCTTTTCTAAAATCCGGATTAATTGA 57.531 29.630 29.42 22.08 0.00 2.57
1519 1648 9.736023 CTCCTTTTCTAAAATCCGGATTAATTG 57.264 33.333 29.42 20.40 0.00 2.32
1520 1649 8.914011 CCTCCTTTTCTAAAATCCGGATTAATT 58.086 33.333 29.42 22.10 0.00 1.40
1521 1650 8.279361 TCCTCCTTTTCTAAAATCCGGATTAAT 58.721 33.333 29.42 22.26 0.00 1.40
1522 1651 7.635648 TCCTCCTTTTCTAAAATCCGGATTAA 58.364 34.615 29.42 17.13 0.00 1.40
1523 1652 7.202972 TCCTCCTTTTCTAAAATCCGGATTA 57.797 36.000 29.42 14.46 0.00 1.75
1524 1653 6.074698 TCCTCCTTTTCTAAAATCCGGATT 57.925 37.500 24.27 24.27 0.00 3.01
1525 1654 5.710409 TCCTCCTTTTCTAAAATCCGGAT 57.290 39.130 12.38 12.38 0.00 4.18
1526 1655 5.437060 CATCCTCCTTTTCTAAAATCCGGA 58.563 41.667 6.61 6.61 0.00 5.14
1527 1656 4.580580 CCATCCTCCTTTTCTAAAATCCGG 59.419 45.833 0.00 0.00 0.00 5.14
1528 1657 4.036852 GCCATCCTCCTTTTCTAAAATCCG 59.963 45.833 0.00 0.00 0.00 4.18
1529 1658 4.342378 GGCCATCCTCCTTTTCTAAAATCC 59.658 45.833 0.00 0.00 0.00 3.01
1530 1659 4.342378 GGGCCATCCTCCTTTTCTAAAATC 59.658 45.833 4.39 0.00 0.00 2.17
1531 1660 4.290093 GGGCCATCCTCCTTTTCTAAAAT 58.710 43.478 4.39 0.00 0.00 1.82
1532 1661 3.565670 GGGGCCATCCTCCTTTTCTAAAA 60.566 47.826 4.39 0.00 35.33 1.52
1533 1662 2.024369 GGGGCCATCCTCCTTTTCTAAA 60.024 50.000 4.39 0.00 35.33 1.85
1534 1663 1.569072 GGGGCCATCCTCCTTTTCTAA 59.431 52.381 4.39 0.00 35.33 2.10
1535 1664 1.222567 GGGGCCATCCTCCTTTTCTA 58.777 55.000 4.39 0.00 35.33 2.10
1536 1665 2.010900 GGGGCCATCCTCCTTTTCT 58.989 57.895 4.39 0.00 35.33 2.52
1537 1666 4.686695 GGGGCCATCCTCCTTTTC 57.313 61.111 4.39 0.00 35.33 2.29
1552 1681 4.074970 CTCTCATCCGAATTAATTGGGGG 58.925 47.826 24.10 17.81 36.45 5.40
1553 1682 4.074970 CCTCTCATCCGAATTAATTGGGG 58.925 47.826 24.10 16.08 36.45 4.96
1554 1683 4.074970 CCCTCTCATCCGAATTAATTGGG 58.925 47.826 20.10 20.10 37.04 4.12
1555 1684 4.074970 CCCCTCTCATCCGAATTAATTGG 58.925 47.826 5.17 4.17 0.00 3.16
1614 1743 4.699637 TCATGGAACGAACATACCCATAC 58.300 43.478 0.00 0.00 35.99 2.39
1655 1784 3.134127 GCGACATCAACTGGGCCC 61.134 66.667 17.59 17.59 0.00 5.80
1667 1796 1.662876 GCAGAAATTTCAAGCGCGACA 60.663 47.619 19.99 0.00 0.00 4.35
1677 1806 6.017400 TCCAATGAACAGAGCAGAAATTTC 57.983 37.500 10.33 10.33 0.00 2.17
1775 1904 4.119136 GGAAAGCAGAGCTAAGACTGATC 58.881 47.826 4.41 0.00 38.25 2.92
1779 1908 3.056179 GTCAGGAAAGCAGAGCTAAGACT 60.056 47.826 0.00 0.00 38.25 3.24
1821 1950 0.033920 ACGGACGGTAAAGGTTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
1898 2035 4.218200 TGCTTGCCTACACGTAGTAAGTTA 59.782 41.667 14.64 6.77 41.61 2.24
1911 2048 1.089920 CCAGTCATGTGCTTGCCTAC 58.910 55.000 0.00 0.00 0.00 3.18
1913 2050 0.111061 TTCCAGTCATGTGCTTGCCT 59.889 50.000 0.00 0.00 0.00 4.75
2007 2144 3.285484 CAGCATAACCAGCCTTCAAGAT 58.715 45.455 0.00 0.00 0.00 2.40
2117 2255 6.907961 ACTAGAAGAGGGTAAAAACCAGTTT 58.092 36.000 0.00 0.00 0.00 2.66
2176 2314 7.201376 GCAGCAAACAACATATTATTCACAGTG 60.201 37.037 0.00 0.00 0.00 3.66
2192 2330 2.095969 GCATGTACGTAGCAGCAAACAA 60.096 45.455 0.00 0.00 0.00 2.83
2217 2355 1.197430 AGGCTGACAACTCCCTCTGG 61.197 60.000 0.00 0.00 0.00 3.86
2272 2410 8.777865 TTGATTCTTCATTGACGTCTAAGAAT 57.222 30.769 28.42 28.42 45.08 2.40
2357 2495 9.601217 GTTTTATGCTATTCACTCCTAGAGAAA 57.399 33.333 0.00 0.00 33.32 2.52
2358 2496 8.982723 AGTTTTATGCTATTCACTCCTAGAGAA 58.017 33.333 0.00 0.00 33.32 2.87
2359 2497 8.540507 AGTTTTATGCTATTCACTCCTAGAGA 57.459 34.615 0.00 0.00 33.32 3.10
2360 2498 9.685828 GTAGTTTTATGCTATTCACTCCTAGAG 57.314 37.037 0.00 0.00 35.52 2.43
2361 2499 8.639761 GGTAGTTTTATGCTATTCACTCCTAGA 58.360 37.037 0.00 0.00 0.00 2.43
2362 2500 8.421784 TGGTAGTTTTATGCTATTCACTCCTAG 58.578 37.037 0.00 0.00 0.00 3.02
2363 2501 8.202137 GTGGTAGTTTTATGCTATTCACTCCTA 58.798 37.037 0.00 0.00 0.00 2.94
2364 2502 7.048512 GTGGTAGTTTTATGCTATTCACTCCT 58.951 38.462 0.00 0.00 0.00 3.69
2365 2503 7.048512 AGTGGTAGTTTTATGCTATTCACTCC 58.951 38.462 0.00 0.00 34.23 3.85
2627 2766 9.743057 CCCGATTGCATTTTTAGAACATTTATA 57.257 29.630 0.00 0.00 0.00 0.98
2628 2767 8.257306 ACCCGATTGCATTTTTAGAACATTTAT 58.743 29.630 0.00 0.00 0.00 1.40
2631 2770 6.036577 ACCCGATTGCATTTTTAGAACATT 57.963 33.333 0.00 0.00 0.00 2.71
2633 2772 4.082463 GGACCCGATTGCATTTTTAGAACA 60.082 41.667 0.00 0.00 0.00 3.18
2634 2773 4.421058 GGACCCGATTGCATTTTTAGAAC 58.579 43.478 0.00 0.00 0.00 3.01
2637 2776 3.023832 AGGGACCCGATTGCATTTTTAG 58.976 45.455 4.40 0.00 0.00 1.85
3001 3203 3.956377 CCGTCCTCTATGGCCTGT 58.044 61.111 3.32 0.00 35.26 4.00
3265 3488 0.533308 CAAACCCCGAAGTTCACCGA 60.533 55.000 3.32 0.00 0.00 4.69
3334 3568 3.909995 TGTCTCCTCCTCATTTCCTTCAA 59.090 43.478 0.00 0.00 0.00 2.69
3563 3797 7.772332 AAGAGTGAATAGCATAAAACTACCG 57.228 36.000 0.00 0.00 0.00 4.02
3609 3843 6.237808 CCACTGAGCACAAAACAAAACATAAC 60.238 38.462 0.00 0.00 0.00 1.89
3652 3886 3.829601 TGCCAAATTGATTCCTTTACGGT 59.170 39.130 0.00 0.00 0.00 4.83
3673 3907 1.825090 TGCTCCACCTTGCAATAGTG 58.175 50.000 18.32 18.32 36.15 2.74
3731 3965 4.875544 TTCACTTGTCAGTTGCTGTAAC 57.124 40.909 0.00 0.00 39.65 2.50
3761 3999 0.621571 AGAGCCACCTTCCATAGCCA 60.622 55.000 0.00 0.00 0.00 4.75
3816 4054 6.434028 TCAATCCAAGATACAAAACCTGAAGG 59.566 38.462 0.00 0.00 42.17 3.46
3865 4103 6.585702 TGTCATGCTTTCGAATATTTGGTTTG 59.414 34.615 0.00 0.00 0.00 2.93
3866 4104 6.586082 GTGTCATGCTTTCGAATATTTGGTTT 59.414 34.615 0.00 0.00 0.00 3.27
3869 4107 5.639757 TGTGTCATGCTTTCGAATATTTGG 58.360 37.500 0.00 0.00 0.00 3.28
3874 4112 5.878332 ATGTTGTGTCATGCTTTCGAATA 57.122 34.783 0.00 0.00 0.00 1.75
3898 4136 2.359900 CATCCTCAGTAACTGCAACCC 58.640 52.381 0.00 0.00 0.00 4.11
3901 4139 2.290260 CCACCATCCTCAGTAACTGCAA 60.290 50.000 0.00 0.00 0.00 4.08
3930 4168 3.825160 TTGCCCGACTGTGCTCACC 62.825 63.158 0.00 0.00 0.00 4.02
3975 4213 6.037172 CCCAAGGAACATAAAAGTCTGATACG 59.963 42.308 0.00 0.00 0.00 3.06
3978 4216 6.139679 TCCCAAGGAACATAAAAGTCTGAT 57.860 37.500 0.00 0.00 0.00 2.90
4042 4280 9.620259 AGAGTTTAACAATCAAGTTTTCTCTCT 57.380 29.630 0.00 0.00 32.13 3.10
4043 4281 9.657121 CAGAGTTTAACAATCAAGTTTTCTCTC 57.343 33.333 0.00 0.00 33.65 3.20
4044 4282 8.131731 GCAGAGTTTAACAATCAAGTTTTCTCT 58.868 33.333 0.00 0.00 34.86 3.10
4049 4290 6.862209 TGTGCAGAGTTTAACAATCAAGTTT 58.138 32.000 0.00 0.00 33.07 2.66
4052 4293 6.728200 TCTTGTGCAGAGTTTAACAATCAAG 58.272 36.000 0.00 4.11 32.47 3.02
4054 4295 6.691754 TTCTTGTGCAGAGTTTAACAATCA 57.308 33.333 0.00 0.00 32.47 2.57
4089 4445 8.144862 TCAAATTCCCTGTTTAAGGCATTTAT 57.855 30.769 0.00 0.00 45.89 1.40
4090 4446 7.546250 TCAAATTCCCTGTTTAAGGCATTTA 57.454 32.000 0.00 0.00 45.89 1.40
4120 4476 5.063180 TGAATCTTATGTTTTGCCTGCAG 57.937 39.130 6.78 6.78 0.00 4.41
4160 4516 2.243478 ACCTGACTGAGCCTCATCTCTA 59.757 50.000 0.00 0.00 34.29 2.43
4195 4551 1.408127 CCATTGGTCCCGCAATACAGA 60.408 52.381 0.00 0.00 0.00 3.41
4326 4683 8.613613 TGCAATTATTTTACATTGTTAGAGCG 57.386 30.769 0.00 0.00 33.58 5.03
4339 4696 6.832520 TTGTCTCCAGCTGCAATTATTTTA 57.167 33.333 8.66 0.00 0.00 1.52
4370 4727 6.755141 CCATATTTGCTTTCTGGACAAGAATG 59.245 38.462 0.00 0.00 44.46 2.67
4389 4746 6.711277 TCTTGTACTTGTTCAGAGCCATATT 58.289 36.000 0.00 0.00 0.00 1.28
4424 4781 1.720852 GTTGCAAGCAAATTAGCCACG 59.279 47.619 9.32 0.00 37.70 4.94
4430 4787 8.087136 TGATCTTTGTATGTTGCAAGCAAATTA 58.913 29.630 9.32 1.81 37.70 1.40
4454 4811 5.760743 TCCGTTTGTGACAATAATGACTTGA 59.239 36.000 0.00 0.00 0.00 3.02
4496 4853 1.130613 GTCATCACTGTTGCGCGTC 59.869 57.895 8.43 0.00 0.00 5.19
4498 4855 1.686566 ATCGTCATCACTGTTGCGCG 61.687 55.000 0.00 0.00 0.00 6.86
4514 4871 6.609237 TTGATTATCTGCTCTTCCAAATCG 57.391 37.500 0.00 0.00 0.00 3.34
4572 4929 2.026075 TGGTTGCATCCATCTGTGATCA 60.026 45.455 12.62 0.00 31.96 2.92
4601 4958 6.590292 CGGTACAGACTTGTCATAATTCAGTT 59.410 38.462 3.49 0.00 38.76 3.16
4658 5015 8.425237 TCCATTTCCATACGTAGATACCAATA 57.575 34.615 0.08 0.00 0.00 1.90
4675 5032 4.890158 ACAGGGATTTGTTTCCATTTCC 57.110 40.909 0.00 0.00 37.53 3.13
4721 5078 8.082852 ACAGGTATCGACATCATTACAGATTAC 58.917 37.037 0.00 0.00 0.00 1.89
4724 5081 6.040955 ACACAGGTATCGACATCATTACAGAT 59.959 38.462 0.00 0.00 0.00 2.90
4725 5082 5.359860 ACACAGGTATCGACATCATTACAGA 59.640 40.000 0.00 0.00 0.00 3.41
4744 5101 1.501169 TGTCGATGCAGTTCACACAG 58.499 50.000 0.00 0.00 0.00 3.66
4813 5170 5.546621 TCATTAGTAGTAGTTGATGGCCC 57.453 43.478 0.00 0.00 0.00 5.80
4832 5189 6.899393 TTGTTTTGGTCTCAAAGCTATCAT 57.101 33.333 7.10 0.00 42.93 2.45
4834 5191 9.860898 ATTATTTGTTTTGGTCTCAAAGCTATC 57.139 29.630 7.10 0.00 42.93 2.08
4862 5222 8.209869 GCATTCGACATTCATAAATTAACATGC 58.790 33.333 0.00 0.00 0.00 4.06
4863 5223 9.235537 TGCATTCGACATTCATAAATTAACATG 57.764 29.630 0.00 0.00 0.00 3.21
4883 5243 6.902341 TGAATAGAGAAACACTGTTGCATTC 58.098 36.000 2.59 4.13 0.00 2.67
4890 5250 8.861086 TCTAGAACTTGAATAGAGAAACACTGT 58.139 33.333 0.00 0.00 0.00 3.55
4913 5273 6.636454 ACAAAACTCCCATAGGTGAATCTA 57.364 37.500 0.00 0.00 0.00 1.98
4948 5308 6.440647 TGTATCTCTTCTCTAAAAAGCCCAGA 59.559 38.462 0.00 0.00 0.00 3.86
4970 5330 7.385205 GTCAAAGCTAAGTCAAGAGAACATGTA 59.615 37.037 0.00 0.00 0.00 2.29
4987 5347 7.308951 GCAAAAATAGTTACCCAGTCAAAGCTA 60.309 37.037 0.00 0.00 0.00 3.32
5016 5377 6.422701 TGTTCTTACCAAACAGAGACATTACG 59.577 38.462 0.00 0.00 32.98 3.18
5096 5457 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
5114 5475 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
5117 5478 5.323581 ACCTTATATTCTACTCCCTCCGTC 58.676 45.833 0.00 0.00 0.00 4.79
5122 5483 5.839606 GTGTGGACCTTATATTCTACTCCCT 59.160 44.000 0.00 0.00 0.00 4.20
5187 5548 8.931385 AATTTTTCAGCCACATGATTATGTAC 57.069 30.769 2.35 0.00 45.53 2.90
5246 5607 5.567623 CGGTGTAATGGAATGCTCTAGCTAT 60.568 44.000 3.26 0.00 42.66 2.97
5263 5624 4.023726 AGGCCAAATAAAGACGGTGTAA 57.976 40.909 5.01 0.00 0.00 2.41
5264 5625 3.706600 AGGCCAAATAAAGACGGTGTA 57.293 42.857 5.01 0.00 0.00 2.90
5289 5650 4.634012 ACCACATCCTAACTAGTGCAAA 57.366 40.909 0.00 0.00 0.00 3.68
5317 5680 8.697507 AAAGATCTTGAACAACTTAGACCAAT 57.302 30.769 9.17 0.00 0.00 3.16
5471 5834 8.989653 ACTTCTCTATTTTGTTCTGTACTAGC 57.010 34.615 0.00 0.00 0.00 3.42
5512 5876 9.877178 TGAAATTGCCTAACTTTTGAACTTAAA 57.123 25.926 0.00 0.00 0.00 1.52
5514 5878 9.474920 CATGAAATTGCCTAACTTTTGAACTTA 57.525 29.630 0.00 0.00 0.00 2.24
5521 5885 9.729281 AATTGATCATGAAATTGCCTAACTTTT 57.271 25.926 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.