Multiple sequence alignment - TraesCS6D01G186100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G186100 chr6D 100.000 3068 0 0 1 3068 243425648 243422581 0.000000e+00 5666.0
1 TraesCS6D01G186100 chr6D 96.016 2485 74 8 590 3068 243450502 243448037 0.000000e+00 4017.0
2 TraesCS6D01G186100 chr6A 95.276 868 36 3 590 1455 333958976 333959840 0.000000e+00 1371.0
3 TraesCS6D01G186100 chr6A 94.034 771 40 4 1745 2511 333960323 333961091 0.000000e+00 1164.0
4 TraesCS6D01G186100 chr6A 98.635 293 4 0 1457 1749 333959874 333960166 1.260000e-143 520.0
5 TraesCS6D01G186100 chr6B 94.816 868 36 3 590 1455 334453353 334452493 0.000000e+00 1345.0
6 TraesCS6D01G186100 chr6B 93.759 689 20 6 1457 2143 334452334 334451667 0.000000e+00 1013.0
7 TraesCS6D01G186100 chr6B 90.365 384 24 6 2196 2578 334451547 334451176 2.750000e-135 492.0
8 TraesCS6D01G186100 chr6B 87.192 203 24 1 2594 2796 334444536 334444336 2.380000e-56 230.0
9 TraesCS6D01G186100 chr1D 92.712 590 42 1 1 589 195845841 195846430 0.000000e+00 850.0
10 TraesCS6D01G186100 chr1D 89.262 596 58 6 1 591 50669367 50668773 0.000000e+00 741.0
11 TraesCS6D01G186100 chr5D 89.769 606 53 8 1 600 355731639 355732241 0.000000e+00 767.0
12 TraesCS6D01G186100 chr7D 89.580 595 53 8 1 589 492164925 492164334 0.000000e+00 747.0
13 TraesCS6D01G186100 chr7D 89.262 596 54 7 1 589 244492137 244491545 0.000000e+00 737.0
14 TraesCS6D01G186100 chr2D 89.412 595 56 5 1 589 150731239 150731832 0.000000e+00 743.0
15 TraesCS6D01G186100 chr2D 89.376 593 57 6 1 589 540010470 540009880 0.000000e+00 741.0
16 TraesCS6D01G186100 chr2D 89.226 594 53 9 4 589 531564280 531563690 0.000000e+00 732.0
17 TraesCS6D01G186100 chr2D 93.617 47 3 0 590 636 605107471 605107425 1.530000e-08 71.3
18 TraesCS6D01G186100 chr4D 89.112 597 53 10 1 589 114024325 114024917 0.000000e+00 732.0
19 TraesCS6D01G186100 chr4A 96.970 33 1 0 645 677 681713068 681713100 4.270000e-04 56.5
20 TraesCS6D01G186100 chr3D 100.000 29 0 0 645 673 254114671 254114643 2.000000e-03 54.7
21 TraesCS6D01G186100 chr2A 100.000 28 0 0 645 672 130809850 130809823 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G186100 chr6D 243422581 243425648 3067 True 5666.000000 5666 100.000000 1 3068 1 chr6D.!!$R1 3067
1 TraesCS6D01G186100 chr6D 243448037 243450502 2465 True 4017.000000 4017 96.016000 590 3068 1 chr6D.!!$R2 2478
2 TraesCS6D01G186100 chr6A 333958976 333961091 2115 False 1018.333333 1371 95.981667 590 2511 3 chr6A.!!$F1 1921
3 TraesCS6D01G186100 chr6B 334451176 334453353 2177 True 950.000000 1345 92.980000 590 2578 3 chr6B.!!$R2 1988
4 TraesCS6D01G186100 chr1D 195845841 195846430 589 False 850.000000 850 92.712000 1 589 1 chr1D.!!$F1 588
5 TraesCS6D01G186100 chr1D 50668773 50669367 594 True 741.000000 741 89.262000 1 591 1 chr1D.!!$R1 590
6 TraesCS6D01G186100 chr5D 355731639 355732241 602 False 767.000000 767 89.769000 1 600 1 chr5D.!!$F1 599
7 TraesCS6D01G186100 chr7D 492164334 492164925 591 True 747.000000 747 89.580000 1 589 1 chr7D.!!$R2 588
8 TraesCS6D01G186100 chr7D 244491545 244492137 592 True 737.000000 737 89.262000 1 589 1 chr7D.!!$R1 588
9 TraesCS6D01G186100 chr2D 150731239 150731832 593 False 743.000000 743 89.412000 1 589 1 chr2D.!!$F1 588
10 TraesCS6D01G186100 chr2D 540009880 540010470 590 True 741.000000 741 89.376000 1 589 1 chr2D.!!$R2 588
11 TraesCS6D01G186100 chr2D 531563690 531564280 590 True 732.000000 732 89.226000 4 589 1 chr2D.!!$R1 585
12 TraesCS6D01G186100 chr4D 114024325 114024917 592 False 732.000000 732 89.112000 1 589 1 chr4D.!!$F1 588


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 139 0.969894 GGATATCCCACTCGACCAGG 59.030 60.000 11.02 0.0 34.14 4.45 F
1963 2300 1.448540 CAGTGCGTGGGAGATCACC 60.449 63.158 0.00 0.0 34.36 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2365 1.021390 AGGGTTCTCGAATGCTTGCG 61.021 55.0 0.0 0.0 0.0 4.85 R
2892 3298 0.034767 CTTCTCAGCCATTCCCAGCA 60.035 55.0 0.0 0.0 0.0 4.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 4.079253 TGCCTTGGAGTTAAAGACATTCC 58.921 43.478 0.00 0.00 0.00 3.01
90 91 7.942341 TGGAGTTAAAGACATTCCAAGTACAAT 59.058 33.333 0.00 0.00 35.13 2.71
135 139 0.969894 GGATATCCCACTCGACCAGG 59.030 60.000 11.02 0.00 34.14 4.45
141 145 1.567649 TCCCACTCGACCAGGTATACT 59.432 52.381 2.25 0.00 0.00 2.12
145 149 3.564644 CCACTCGACCAGGTATACTACTG 59.435 52.174 2.25 2.67 34.54 2.74
259 264 1.596934 GGTCAGGCATTCACTCCGA 59.403 57.895 0.00 0.00 0.00 4.55
479 492 5.312079 GAGACGTAGGGCTATTACTTCCTA 58.688 45.833 0.00 0.00 0.00 2.94
531 544 1.725164 GCACAAACTCACCGTAGCTAC 59.275 52.381 14.19 14.19 0.00 3.58
623 636 5.163513 CGATCTTTTGTATGCAGCCTTTTT 58.836 37.500 0.00 0.00 0.00 1.94
764 777 7.825331 TGGAACAACTTGTGGTATTTCATTA 57.175 32.000 0.00 0.00 31.92 1.90
770 783 7.940137 ACAACTTGTGGTATTTCATTACCTACA 59.060 33.333 0.00 3.09 41.90 2.74
884 898 8.250332 GGAACATTATTCCTTGCAACTAAATCA 58.750 33.333 0.00 0.00 35.73 2.57
1045 1060 2.644299 TCTTTTGAAGCTCCCTCCATCA 59.356 45.455 0.00 0.00 0.00 3.07
1054 1069 2.423373 GCTCCCTCCATCAAGCCAATTA 60.423 50.000 0.00 0.00 0.00 1.40
1070 1085 7.281040 AGCCAATTATGATTGTACCATTCAG 57.719 36.000 9.16 0.00 40.85 3.02
1258 1273 3.134442 ACAATGTTTGCTGGAAATGGTGT 59.866 39.130 0.00 0.13 0.00 4.16
1438 1456 8.810990 TTTATACACAATAAAGGAAACGGGAT 57.189 30.769 0.00 0.00 35.55 3.85
1916 2253 1.745653 GCCTGTTTGCTCACCTAATCC 59.254 52.381 0.00 0.00 0.00 3.01
1963 2300 1.448540 CAGTGCGTGGGAGATCACC 60.449 63.158 0.00 0.00 34.36 4.02
2028 2365 2.305927 TGAGACAGGGGTTGAGAAATCC 59.694 50.000 0.00 0.00 0.00 3.01
2039 2376 1.398041 TGAGAAATCCGCAAGCATTCG 59.602 47.619 0.00 0.00 0.00 3.34
2052 2389 2.125106 ATTCGAGAACCCTGGCGC 60.125 61.111 0.00 0.00 0.00 6.53
2107 2445 7.311364 TCGTTTTGTGCCCTTATAAATAGAC 57.689 36.000 0.00 0.00 0.00 2.59
2131 2469 8.801882 ACCATCTTAACATTTTAGATTCGGAA 57.198 30.769 0.00 0.00 0.00 4.30
2194 2599 3.002791 ACGGTGTGCTAGTGATGAATTG 58.997 45.455 0.00 0.00 0.00 2.32
2306 2711 4.278170 TGCTTCGTGATGTCTTGGATTTTT 59.722 37.500 0.00 0.00 0.00 1.94
2340 2746 1.352083 AGTGCAGCCTTAGGACTTCA 58.648 50.000 0.69 0.00 33.65 3.02
2384 2790 4.938226 GGAGAATGAGAATTTTGACGAGGT 59.062 41.667 0.00 0.00 0.00 3.85
2385 2791 5.412904 GGAGAATGAGAATTTTGACGAGGTT 59.587 40.000 0.00 0.00 0.00 3.50
2387 2793 3.896648 TGAGAATTTTGACGAGGTTGC 57.103 42.857 0.00 0.00 0.00 4.17
2429 2835 6.009115 AGGACGTGACATTTAATTTCCAAC 57.991 37.500 0.00 0.00 0.00 3.77
2443 2849 2.656947 TCCAACCCCTTGTTTGAGAG 57.343 50.000 0.00 0.00 34.00 3.20
2539 2945 4.381292 CGAGAGGTTAAGTTATGACGGGTT 60.381 45.833 0.00 0.00 0.00 4.11
2542 2948 5.189145 AGAGGTTAAGTTATGACGGGTTGAT 59.811 40.000 0.00 0.00 0.00 2.57
2642 3048 1.134159 GGCAGAGAGGCATGATCACTT 60.134 52.381 0.00 0.00 43.51 3.16
2671 3077 7.033791 CAGGAAGATTGATTTTGGTGAATCAG 58.966 38.462 0.00 0.00 44.33 2.90
2687 3093 2.254152 TCAGGTTATGAGAGCCAGGT 57.746 50.000 0.00 0.00 32.77 4.00
2709 3115 1.443702 CGCACCACTTGATCGTCGA 60.444 57.895 0.00 0.00 0.00 4.20
2710 3116 1.674611 CGCACCACTTGATCGTCGAC 61.675 60.000 5.18 5.18 0.00 4.20
2746 3152 4.018506 TGGGCATTGGAGAGAATAGACAAA 60.019 41.667 0.00 0.00 0.00 2.83
2775 3181 1.143684 GGCATTCTTCTGGGCAGGATA 59.856 52.381 0.00 0.00 0.00 2.59
2776 3182 2.502295 GCATTCTTCTGGGCAGGATAG 58.498 52.381 0.00 0.00 0.00 2.08
2784 3190 2.290745 GGCAGGATAGGAGGGGGT 59.709 66.667 0.00 0.00 0.00 4.95
2785 3191 1.843832 GGCAGGATAGGAGGGGGTC 60.844 68.421 0.00 0.00 0.00 4.46
2802 3208 3.322466 CAGTGGAGGGAAGGGCGT 61.322 66.667 0.00 0.00 0.00 5.68
2813 3219 1.339727 GGAAGGGCGTAGTTTCATGGT 60.340 52.381 0.00 0.00 0.00 3.55
2816 3222 3.926058 AGGGCGTAGTTTCATGGTAAT 57.074 42.857 0.00 0.00 0.00 1.89
2824 3230 4.657814 AGTTTCATGGTAATGGGTCTGT 57.342 40.909 0.00 0.00 34.30 3.41
2825 3231 4.589908 AGTTTCATGGTAATGGGTCTGTC 58.410 43.478 0.00 0.00 34.30 3.51
2826 3232 2.979814 TCATGGTAATGGGTCTGTCG 57.020 50.000 0.00 0.00 34.30 4.35
2827 3233 1.134521 TCATGGTAATGGGTCTGTCGC 60.135 52.381 0.00 0.00 34.30 5.19
2828 3234 0.180406 ATGGTAATGGGTCTGTCGCC 59.820 55.000 0.00 0.00 0.00 5.54
2829 3235 1.153229 GGTAATGGGTCTGTCGCCC 60.153 63.158 0.00 0.00 46.26 6.13
2834 3240 2.430367 GGGTCTGTCGCCCAAAGT 59.570 61.111 0.00 0.00 45.40 2.66
2835 3241 1.675219 GGGTCTGTCGCCCAAAGTA 59.325 57.895 0.00 0.00 45.40 2.24
2836 3242 0.252197 GGGTCTGTCGCCCAAAGTAT 59.748 55.000 0.00 0.00 45.40 2.12
2837 3243 1.653151 GGTCTGTCGCCCAAAGTATC 58.347 55.000 0.00 0.00 0.00 2.24
2838 3244 1.207329 GGTCTGTCGCCCAAAGTATCT 59.793 52.381 0.00 0.00 0.00 1.98
2839 3245 2.271800 GTCTGTCGCCCAAAGTATCTG 58.728 52.381 0.00 0.00 0.00 2.90
2840 3246 1.207089 TCTGTCGCCCAAAGTATCTGG 59.793 52.381 0.00 0.00 0.00 3.86
2863 3269 2.484602 GGTTTAGGGGTGATGGACCTA 58.515 52.381 0.00 0.00 45.33 3.08
2864 3270 3.053826 GGTTTAGGGGTGATGGACCTAT 58.946 50.000 0.00 0.00 45.33 2.57
2892 3298 1.137872 CTGGTCTTGCTCTTCGGCTAT 59.862 52.381 0.00 0.00 0.00 2.97
2938 3344 0.749454 GATTCGAGGCCATGGCAAGT 60.749 55.000 36.56 21.32 44.11 3.16
2973 3379 2.217750 CGGACAAACATGTGAGGACAA 58.782 47.619 0.00 0.00 35.11 3.18
3015 3421 1.546029 GGCATGTTGGAAAAGGAGACC 59.454 52.381 0.00 0.00 0.00 3.85
3045 3451 5.975693 TTTTTGGAATGACAGATGGGTAC 57.024 39.130 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 7.704271 TCAGTCGGTATCTTCTATTGTACTTG 58.296 38.462 0.00 0.00 0.00 3.16
145 149 3.066760 GTCGAATGGAATTTGGACATCCC 59.933 47.826 0.00 0.00 38.85 3.85
150 154 3.756434 TCTTGGTCGAATGGAATTTGGAC 59.244 43.478 0.00 0.00 38.29 4.02
151 155 4.027674 TCTTGGTCGAATGGAATTTGGA 57.972 40.909 0.00 0.00 38.29 3.53
210 215 3.368948 CCTGAGTGGCTTTAGACCTTCTC 60.369 52.174 0.00 0.00 33.07 2.87
365 372 4.264713 GGAGGGGGTGGCTTATATAGAGTA 60.265 50.000 0.00 0.00 0.00 2.59
479 492 0.602905 CGAGTTCAGGCCCTTTTCGT 60.603 55.000 0.00 0.00 0.00 3.85
531 544 0.312416 CGTAGGAGGAGGCAAGATCG 59.688 60.000 0.00 0.00 0.00 3.69
558 571 6.071334 TGGGAGTAAGTCTGACAGTAAGAATG 60.071 42.308 10.88 0.00 0.00 2.67
623 636 4.077108 AGTGAATCTTGCAGAAATGCAGA 58.923 39.130 2.87 4.34 46.21 4.26
759 772 7.833285 AAAAAGCCTTTTCTGTAGGTAATGA 57.167 32.000 2.34 0.00 35.13 2.57
764 777 6.518369 GCCAATAAAAAGCCTTTTCTGTAGGT 60.518 38.462 2.34 0.00 36.20 3.08
770 783 6.483307 GTCAAAGCCAATAAAAAGCCTTTTCT 59.517 34.615 2.34 0.00 36.20 2.52
793 806 9.181805 CATTAGCAAATGATCATCAAAGATGTC 57.818 33.333 9.06 5.20 44.50 3.06
985 1000 3.634910 TCATTCATAGCACATGCAGCAAT 59.365 39.130 12.59 1.87 45.16 3.56
1028 1043 1.340405 GCTTGATGGAGGGAGCTTCAA 60.340 52.381 0.00 0.00 32.54 2.69
1045 1060 7.658525 TGAATGGTACAATCATAATTGGCTT 57.341 32.000 0.00 0.00 44.08 4.35
1070 1085 1.930908 GCAGCCTGATGGTCTTGTGC 61.931 60.000 0.00 0.00 35.27 4.57
1276 1291 5.192927 ACCTGATGTGACAAGAAGAACAAA 58.807 37.500 0.00 0.00 0.00 2.83
1277 1292 4.780815 ACCTGATGTGACAAGAAGAACAA 58.219 39.130 0.00 0.00 0.00 2.83
1278 1293 4.422073 ACCTGATGTGACAAGAAGAACA 57.578 40.909 0.00 0.00 0.00 3.18
1305 1323 5.589050 GTCTGAAGAACTTTTACCTTGGTGT 59.411 40.000 2.03 0.00 0.00 4.16
1314 1332 6.732896 AGGTCAGAGTCTGAAGAACTTTTA 57.267 37.500 24.26 0.00 42.46 1.52
1421 1439 6.391227 AGCAATATCCCGTTTCCTTTATTG 57.609 37.500 0.00 0.00 32.72 1.90
1916 2253 4.446371 CTGGAAGTAACAATAGGCAGAGG 58.554 47.826 0.00 0.00 0.00 3.69
1963 2300 3.482722 CAAGTTGATGTGCTTGGCTAG 57.517 47.619 0.00 0.00 38.61 3.42
2028 2365 1.021390 AGGGTTCTCGAATGCTTGCG 61.021 55.000 0.00 0.00 0.00 4.85
2039 2376 3.119096 GTTCGCGCCAGGGTTCTC 61.119 66.667 0.00 0.00 0.00 2.87
2052 2389 4.663166 AGAATCGTCACAGATACAGTTCG 58.337 43.478 0.00 0.00 0.00 3.95
2107 2445 8.893727 ACTTCCGAATCTAAAATGTTAAGATGG 58.106 33.333 0.00 0.00 0.00 3.51
2143 2481 1.852067 CGTTCCACCCGCAAAAGGAG 61.852 60.000 0.00 0.00 0.00 3.69
2146 2484 1.161843 ATACGTTCCACCCGCAAAAG 58.838 50.000 0.00 0.00 0.00 2.27
2194 2599 0.319813 GCCCCTTGCACAAATCACAC 60.320 55.000 0.00 0.00 40.77 3.82
2330 2736 8.528044 AAAAGTTACCAAACATGAAGTCCTAA 57.472 30.769 0.00 0.00 38.12 2.69
2340 2746 8.934023 TCTCCTTCATAAAAGTTACCAAACAT 57.066 30.769 0.00 0.00 38.12 2.71
2384 2790 6.715264 TCCTATATCTAATCTCGTCACAGCAA 59.285 38.462 0.00 0.00 0.00 3.91
2385 2791 6.149640 GTCCTATATCTAATCTCGTCACAGCA 59.850 42.308 0.00 0.00 0.00 4.41
2387 2793 6.369340 ACGTCCTATATCTAATCTCGTCACAG 59.631 42.308 0.00 0.00 0.00 3.66
2429 2835 0.251341 CCCACCTCTCAAACAAGGGG 60.251 60.000 0.00 0.00 43.17 4.79
2443 2849 2.424956 GCACATCTCTCAAATTCCCACC 59.575 50.000 0.00 0.00 0.00 4.61
2539 2945 7.609146 GGCAATTGATCTATGGAGAACATATCA 59.391 37.037 10.34 0.00 41.07 2.15
2542 2948 6.840527 TGGCAATTGATCTATGGAGAACATA 58.159 36.000 10.34 0.00 41.03 2.29
2563 2969 3.428413 TTAACAAGGTAGGGAGTTGGC 57.572 47.619 0.00 0.00 0.00 4.52
2642 3048 4.523943 CACCAAAATCAATCTTCCTGGTCA 59.476 41.667 0.00 0.00 33.46 4.02
2671 3077 1.134371 GTGGACCTGGCTCTCATAACC 60.134 57.143 0.00 0.00 0.00 2.85
2687 3093 1.374125 CGATCAAGTGGTGCGTGGA 60.374 57.895 0.00 0.00 0.00 4.02
2746 3152 2.441001 CCAGAAGAATGCCCTACATCCT 59.559 50.000 0.00 0.00 38.34 3.24
2775 3181 2.452114 CTCCACTGACCCCCTCCT 59.548 66.667 0.00 0.00 0.00 3.69
2776 3182 2.689034 CCTCCACTGACCCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
2784 3190 2.449967 TACGCCCTTCCCTCCACTGA 62.450 60.000 0.00 0.00 0.00 3.41
2785 3191 1.961180 CTACGCCCTTCCCTCCACTG 61.961 65.000 0.00 0.00 0.00 3.66
2802 3208 5.625886 CGACAGACCCATTACCATGAAACTA 60.626 44.000 0.00 0.00 31.07 2.24
2828 3234 1.834188 AAACCGCCCAGATACTTTGG 58.166 50.000 0.00 0.00 35.41 3.28
2829 3235 2.943033 CCTAAACCGCCCAGATACTTTG 59.057 50.000 0.00 0.00 0.00 2.77
2830 3236 2.092592 CCCTAAACCGCCCAGATACTTT 60.093 50.000 0.00 0.00 0.00 2.66
2831 3237 1.489230 CCCTAAACCGCCCAGATACTT 59.511 52.381 0.00 0.00 0.00 2.24
2832 3238 1.129058 CCCTAAACCGCCCAGATACT 58.871 55.000 0.00 0.00 0.00 2.12
2833 3239 0.108019 CCCCTAAACCGCCCAGATAC 59.892 60.000 0.00 0.00 0.00 2.24
2834 3240 0.326808 ACCCCTAAACCGCCCAGATA 60.327 55.000 0.00 0.00 0.00 1.98
2835 3241 1.618447 ACCCCTAAACCGCCCAGAT 60.618 57.895 0.00 0.00 0.00 2.90
2836 3242 2.204029 ACCCCTAAACCGCCCAGA 60.204 61.111 0.00 0.00 0.00 3.86
2837 3243 1.921869 ATCACCCCTAAACCGCCCAG 61.922 60.000 0.00 0.00 0.00 4.45
2838 3244 1.926489 ATCACCCCTAAACCGCCCA 60.926 57.895 0.00 0.00 0.00 5.36
2839 3245 1.453197 CATCACCCCTAAACCGCCC 60.453 63.158 0.00 0.00 0.00 6.13
2840 3246 1.453197 CCATCACCCCTAAACCGCC 60.453 63.158 0.00 0.00 0.00 6.13
2841 3247 0.746923 GTCCATCACCCCTAAACCGC 60.747 60.000 0.00 0.00 0.00 5.68
2863 3269 4.357918 AGAGCAAGACCAGTGTTTACAT 57.642 40.909 0.00 0.00 0.00 2.29
2864 3270 3.838244 AGAGCAAGACCAGTGTTTACA 57.162 42.857 0.00 0.00 0.00 2.41
2892 3298 0.034767 CTTCTCAGCCATTCCCAGCA 60.035 55.000 0.00 0.00 0.00 4.41
2938 3344 0.609662 GTCCGGTGCCAGGTTTAGTA 59.390 55.000 0.00 0.00 0.00 1.82
2973 3379 4.463891 CCATTGGACCAAGCTATTGAAAGT 59.536 41.667 13.43 0.00 38.83 2.66
3041 3447 1.068816 GCAATTGTTGACCCGTGTACC 60.069 52.381 7.40 0.00 0.00 3.34
3045 3451 0.950836 TCTGCAATTGTTGACCCGTG 59.049 50.000 7.40 0.00 0.00 4.94



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.