Multiple sequence alignment - TraesCS6D01G185900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G185900 chr6D 100.000 3944 0 0 1 3944 242627370 242623427 0.000000e+00 7284.0
1 TraesCS6D01G185900 chr6D 85.333 75 11 0 3650 3724 380819244 380819170 1.180000e-10 78.7
2 TraesCS6D01G185900 chr6A 94.788 3415 109 38 3 3375 337129809 337133196 0.000000e+00 5256.0
3 TraesCS6D01G185900 chr6A 91.860 86 7 0 3377 3462 465607873 465607958 1.920000e-23 121.0
4 TraesCS6D01G185900 chr6A 92.754 69 1 1 3471 3539 337133226 337133290 3.240000e-16 97.1
5 TraesCS6D01G185900 chr6A 90.476 42 2 1 3471 3510 203599974 203599933 2.000000e-03 54.7
6 TraesCS6D01G185900 chr6B 96.483 2019 51 7 985 2984 353874219 353872202 0.000000e+00 3317.0
7 TraesCS6D01G185900 chr6B 91.407 931 41 17 1 927 353875152 353874257 0.000000e+00 1240.0
8 TraesCS6D01G185900 chr6B 87.927 381 21 4 3561 3939 353859310 353858953 3.640000e-115 425.0
9 TraesCS6D01G185900 chr6B 91.525 236 8 7 3144 3375 353859723 353859496 8.230000e-82 315.0
10 TraesCS6D01G185900 chr6B 95.000 80 4 0 3383 3462 21948100 21948021 4.140000e-25 126.0
11 TraesCS6D01G185900 chr6B 74.618 327 61 16 3540 3864 258495121 258495427 1.490000e-24 124.0
12 TraesCS6D01G185900 chr6B 93.671 79 3 1 2982 3060 353872160 353872084 2.490000e-22 117.0
13 TraesCS6D01G185900 chr6B 89.610 77 7 1 3869 3944 260823254 260823330 3.240000e-16 97.1
14 TraesCS6D01G185900 chr6B 100.000 31 0 0 3113 3143 353872046 353872016 1.530000e-04 58.4
15 TraesCS6D01G185900 chr3A 78.431 306 61 3 3540 3840 373357619 373357924 1.120000e-45 195.0
16 TraesCS6D01G185900 chr3D 93.023 86 6 0 3377 3462 79532564 79532649 4.140000e-25 126.0
17 TraesCS6D01G185900 chr3D 91.860 86 7 0 3377 3462 445342965 445343050 1.920000e-23 121.0
18 TraesCS6D01G185900 chr3D 91.304 69 6 0 3870 3938 3526455 3526523 1.170000e-15 95.3
19 TraesCS6D01G185900 chr2D 95.000 80 4 0 3383 3462 67559310 67559231 4.140000e-25 126.0
20 TraesCS6D01G185900 chr2D 95.000 80 4 0 3383 3462 175765369 175765290 4.140000e-25 126.0
21 TraesCS6D01G185900 chr1A 76.587 252 43 10 3540 3780 580202119 580202365 1.490000e-24 124.0
22 TraesCS6D01G185900 chr1A 77.717 184 32 8 3540 3720 348682028 348681851 1.940000e-18 104.0
23 TraesCS6D01G185900 chr1A 91.489 47 3 1 3659 3705 241273176 241273131 3.290000e-06 63.9
24 TraesCS6D01G185900 chr5A 91.954 87 7 0 3377 3463 437926310 437926396 5.350000e-24 122.0
25 TraesCS6D01G185900 chr5A 91.304 69 5 1 3871 3938 678589197 678589265 4.200000e-15 93.5
26 TraesCS6D01G185900 chr5A 85.366 82 6 5 3860 3938 122999019 122999097 3.270000e-11 80.5
27 TraesCS6D01G185900 chr5A 78.947 114 20 3 3828 3938 631376743 631376631 1.520000e-09 75.0
28 TraesCS6D01G185900 chr5A 92.500 40 2 1 3471 3510 524672243 524672281 5.510000e-04 56.5
29 TraesCS6D01G185900 chr5A 100.000 29 0 0 3469 3497 612022758 612022786 2.000000e-03 54.7
30 TraesCS6D01G185900 chr2B 91.860 86 7 0 3377 3462 669438718 669438803 1.920000e-23 121.0
31 TraesCS6D01G185900 chr1D 91.860 86 7 0 3377 3462 413197917 413198002 1.920000e-23 121.0
32 TraesCS6D01G185900 chr1D 86.842 76 8 1 3871 3944 181667271 181667196 2.530000e-12 84.2
33 TraesCS6D01G185900 chr1D 76.647 167 30 8 3558 3720 276253817 276253656 2.530000e-12 84.2
34 TraesCS6D01G185900 chr1D 94.444 36 1 1 3471 3506 458201074 458201040 2.000000e-03 54.7
35 TraesCS6D01G185900 chr4A 89.610 77 7 1 3869 3944 529618246 529618170 3.240000e-16 97.1
36 TraesCS6D01G185900 chr7D 88.158 76 7 2 3871 3944 265269389 265269464 5.430000e-14 89.8
37 TraesCS6D01G185900 chr5B 78.472 144 25 6 3659 3799 262275475 262275615 5.430000e-14 89.8
38 TraesCS6D01G185900 chr5D 100.000 30 0 0 3469 3498 404503512 404503541 5.510000e-04 56.5
39 TraesCS6D01G185900 chr2A 92.500 40 1 1 3469 3506 5780372 5780333 5.510000e-04 56.5
40 TraesCS6D01G185900 chrUn 88.889 45 4 1 3469 3513 249173839 249173796 2.000000e-03 54.7
41 TraesCS6D01G185900 chrUn 88.889 45 4 1 3469 3513 304222714 304222671 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G185900 chr6D 242623427 242627370 3943 True 7284.00 7284 100.00000 1 3944 1 chr6D.!!$R1 3943
1 TraesCS6D01G185900 chr6A 337129809 337133290 3481 False 2676.55 5256 93.77100 3 3539 2 chr6A.!!$F2 3536
2 TraesCS6D01G185900 chr6B 353872016 353875152 3136 True 1183.10 3317 95.39025 1 3143 4 chr6B.!!$R3 3142
3 TraesCS6D01G185900 chr6B 353858953 353859723 770 True 370.00 425 89.72600 3144 3939 2 chr6B.!!$R2 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.608130 TCAATCAGACCAGTGGGACG 59.392 55.0 15.21 0.48 38.05 4.79 F
1218 1287 0.742281 ATGATGCGTGCAGACTGGTC 60.742 55.0 4.26 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1436 0.034089 AGCTTCAGCATTACCCACCC 60.034 55.0 0.75 0.0 45.16 4.61 R
3064 3176 0.180171 CAGTTCATATGTCCCCCGCA 59.820 55.0 1.90 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.291067 GGATTTGCCAAAAAGAAACTTCAG 57.709 37.500 0.00 0.00 36.34 3.02
217 218 7.505585 TGTTAGATTCCAAGATTTTCTGTGGTT 59.494 33.333 0.00 0.00 31.26 3.67
218 219 6.983906 AGATTCCAAGATTTTCTGTGGTTT 57.016 33.333 0.00 0.00 31.26 3.27
247 248 3.139850 GCCAGATCATCAATCAGACCAG 58.860 50.000 0.00 0.00 36.79 4.00
254 255 0.608130 TCAATCAGACCAGTGGGACG 59.392 55.000 15.21 0.48 38.05 4.79
271 272 2.282887 GACCACGGCCCCACAAAT 60.283 61.111 0.00 0.00 0.00 2.32
273 274 1.303806 ACCACGGCCCCACAAATAC 60.304 57.895 0.00 0.00 0.00 1.89
275 276 1.591504 CCACGGCCCCACAAATACAC 61.592 60.000 0.00 0.00 0.00 2.90
291 292 1.200760 ACACACAGGCAGGGCAGATA 61.201 55.000 0.00 0.00 0.00 1.98
364 366 9.425248 TCAGGAGCCAATGATTTATTCTTTTAT 57.575 29.630 0.00 0.00 0.00 1.40
400 402 5.346181 AGTATGGCTAAACTGGTCTCTTC 57.654 43.478 0.00 0.00 0.00 2.87
406 409 4.456222 GGCTAAACTGGTCTCTTCTTTTCC 59.544 45.833 0.00 0.00 0.00 3.13
720 735 2.743928 GTTGTCTGCCAGGGCTCG 60.744 66.667 12.19 2.97 42.51 5.03
810 825 2.199236 GTTAGTAGCGGATTCAACGGG 58.801 52.381 0.00 0.00 0.00 5.28
850 865 3.815337 TCTTCGACTTCGTCTTCTCTG 57.185 47.619 0.00 0.00 40.80 3.35
851 866 3.400255 TCTTCGACTTCGTCTTCTCTGA 58.600 45.455 0.00 0.00 40.80 3.27
878 893 7.878547 TGCACATATGAAATACCAGATCAAA 57.121 32.000 10.38 0.00 0.00 2.69
902 917 1.004044 CACCTGATCTTCTGTTGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
939 955 2.620251 TCACCACCTTCACTCAGTTG 57.380 50.000 0.00 0.00 0.00 3.16
966 982 4.864704 TGTTCAAAGAATAAACAGGCCC 57.135 40.909 0.00 0.00 0.00 5.80
967 983 4.219115 TGTTCAAAGAATAAACAGGCCCA 58.781 39.130 0.00 0.00 0.00 5.36
968 984 4.280677 TGTTCAAAGAATAAACAGGCCCAG 59.719 41.667 0.00 0.00 0.00 4.45
969 985 4.380843 TCAAAGAATAAACAGGCCCAGA 57.619 40.909 0.00 0.00 0.00 3.86
1019 1070 1.523934 GATGAATAACGGTTACGCGGG 59.476 52.381 12.47 0.00 46.04 6.13
1194 1263 1.364626 GGTCTGGTCATGCTTCTGCG 61.365 60.000 0.00 0.00 43.34 5.18
1212 1281 2.092374 GCAAGATGATGCGTGCAGA 58.908 52.632 0.00 0.00 41.83 4.26
1218 1287 0.742281 ATGATGCGTGCAGACTGGTC 60.742 55.000 4.26 0.00 0.00 4.02
1367 1436 0.107017 ACCCTTGGGCTTCATGATCG 60.107 55.000 5.46 0.00 0.00 3.69
1563 1632 0.603172 AGGCGCATGATGATCTGCTC 60.603 55.000 10.83 6.75 36.23 4.26
1647 1716 3.044235 TCTGCAACGACAATGACAGAT 57.956 42.857 0.00 0.00 31.04 2.90
2880 2949 4.265056 GTGCACGGGGGTGGACTT 62.265 66.667 0.00 0.00 41.51 3.01
3049 3161 7.618019 AGTGTTATAGATATGGGTGTCACAT 57.382 36.000 5.12 0.00 0.00 3.21
3050 3162 8.721133 AGTGTTATAGATATGGGTGTCACATA 57.279 34.615 5.12 0.00 35.48 2.29
3051 3163 9.326489 AGTGTTATAGATATGGGTGTCACATAT 57.674 33.333 5.12 4.45 42.53 1.78
3059 3171 9.920946 AGATATGGGTGTCACATATAAACTTTT 57.079 29.630 5.12 0.00 40.57 2.27
3095 3207 6.828785 GGACATATGAACTGTTATGGGAAAGT 59.171 38.462 10.38 0.00 31.46 2.66
3103 3215 9.757227 TGAACTGTTATGGGAAAGTTTAAATTG 57.243 29.630 0.00 0.00 33.14 2.32
3108 3220 8.705594 TGTTATGGGAAAGTTTAAATTGTTGGA 58.294 29.630 0.00 0.00 0.00 3.53
3143 3283 7.011109 CCGTAATTCTTGTTGATTAGACCGATT 59.989 37.037 0.00 0.00 0.00 3.34
3144 3284 9.027129 CGTAATTCTTGTTGATTAGACCGATTA 57.973 33.333 0.00 0.00 0.00 1.75
3147 3287 8.964476 ATTCTTGTTGATTAGACCGATTATGT 57.036 30.769 0.00 0.00 0.00 2.29
3149 3289 9.878667 TTCTTGTTGATTAGACCGATTATGTAA 57.121 29.630 0.00 0.00 0.00 2.41
3171 3312 9.364989 TGTAATATAATGCAACCTTTCTTTTGC 57.635 29.630 0.00 0.00 46.88 3.68
3172 3313 9.586435 GTAATATAATGCAACCTTTCTTTTGCT 57.414 29.630 7.73 0.00 46.83 3.91
3173 3314 8.483307 AATATAATGCAACCTTTCTTTTGCTG 57.517 30.769 7.73 0.00 46.83 4.41
3175 3316 2.106566 TGCAACCTTTCTTTTGCTGGA 58.893 42.857 7.73 0.00 46.83 3.86
3176 3317 2.699846 TGCAACCTTTCTTTTGCTGGAT 59.300 40.909 7.73 0.00 46.83 3.41
3177 3318 3.134442 TGCAACCTTTCTTTTGCTGGATT 59.866 39.130 7.73 0.00 46.83 3.01
3205 3346 5.536260 TCTCATCGATGATTCTCATGAACC 58.464 41.667 27.43 0.00 37.20 3.62
3260 3401 3.734463 TGAGTTCCAAATGCGTTCTACA 58.266 40.909 0.00 0.00 0.00 2.74
3271 3412 1.664151 GCGTTCTACACCTATGTTGCC 59.336 52.381 0.00 0.00 40.48 4.52
3272 3413 1.924524 CGTTCTACACCTATGTTGCCG 59.075 52.381 0.00 0.00 40.48 5.69
3292 3436 4.214758 GCCGGATGTTTAAGTTGTAACAGT 59.785 41.667 5.05 1.78 37.64 3.55
3293 3437 5.409214 GCCGGATGTTTAAGTTGTAACAGTA 59.591 40.000 5.05 0.00 37.64 2.74
3294 3438 6.401796 GCCGGATGTTTAAGTTGTAACAGTAG 60.402 42.308 5.05 5.15 37.64 2.57
3375 3519 8.175925 ACTACTCCCTCCGTAGAAAAATATAC 57.824 38.462 4.40 0.00 38.14 1.47
3376 3520 8.003629 ACTACTCCCTCCGTAGAAAAATATACT 58.996 37.037 4.40 0.00 38.14 2.12
3377 3521 7.287512 ACTCCCTCCGTAGAAAAATATACTC 57.712 40.000 0.00 0.00 0.00 2.59
3378 3522 6.267242 ACTCCCTCCGTAGAAAAATATACTCC 59.733 42.308 0.00 0.00 0.00 3.85
3380 3524 5.543020 CCCTCCGTAGAAAAATATACTCCCT 59.457 44.000 0.00 0.00 0.00 4.20
3381 3525 6.295180 CCCTCCGTAGAAAAATATACTCCCTC 60.295 46.154 0.00 0.00 0.00 4.30
3382 3526 6.267014 CCTCCGTAGAAAAATATACTCCCTCA 59.733 42.308 0.00 0.00 0.00 3.86
3383 3527 7.201974 CCTCCGTAGAAAAATATACTCCCTCAA 60.202 40.741 0.00 0.00 0.00 3.02
3384 3528 8.258850 TCCGTAGAAAAATATACTCCCTCAAT 57.741 34.615 0.00 0.00 0.00 2.57
3385 3529 9.370930 TCCGTAGAAAAATATACTCCCTCAATA 57.629 33.333 0.00 0.00 0.00 1.90
3397 3541 6.380079 ACTCCCTCAATAAGTGATTCAACT 57.620 37.500 0.00 0.00 35.07 3.16
3398 3542 6.784031 ACTCCCTCAATAAGTGATTCAACTT 58.216 36.000 0.00 0.00 42.89 2.66
3400 3544 7.175641 ACTCCCTCAATAAGTGATTCAACTTTG 59.824 37.037 6.76 1.93 40.77 2.77
3401 3545 7.004086 TCCCTCAATAAGTGATTCAACTTTGT 58.996 34.615 6.76 0.00 40.77 2.83
3402 3546 8.160765 TCCCTCAATAAGTGATTCAACTTTGTA 58.839 33.333 6.76 0.00 40.77 2.41
3404 3548 9.003658 CCTCAATAAGTGATTCAACTTTGTACT 57.996 33.333 0.00 0.00 40.77 2.73
3407 3551 9.760660 CAATAAGTGATTCAACTTTGTACTAGC 57.239 33.333 0.00 0.00 40.77 3.42
3408 3552 9.726438 AATAAGTGATTCAACTTTGTACTAGCT 57.274 29.630 0.00 0.00 40.77 3.32
3409 3553 9.726438 ATAAGTGATTCAACTTTGTACTAGCTT 57.274 29.630 0.00 0.00 40.77 3.74
3410 3554 8.451908 AAGTGATTCAACTTTGTACTAGCTTT 57.548 30.769 0.00 0.00 37.05 3.51
3411 3555 9.555727 AAGTGATTCAACTTTGTACTAGCTTTA 57.444 29.630 0.00 0.00 37.05 1.85
3412 3556 9.209175 AGTGATTCAACTTTGTACTAGCTTTAG 57.791 33.333 0.00 0.00 0.00 1.85
3413 3557 8.989980 GTGATTCAACTTTGTACTAGCTTTAGT 58.010 33.333 0.00 0.00 0.00 2.24
3438 3582 9.778993 GTACAATATTAGTACAAAGTCGAGTCA 57.221 33.333 16.63 0.00 41.08 3.41
3439 3583 8.684973 ACAATATTAGTACAAAGTCGAGTCAC 57.315 34.615 0.00 0.00 0.00 3.67
3440 3584 8.521176 ACAATATTAGTACAAAGTCGAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
3441 3585 9.355215 CAATATTAGTACAAAGTCGAGTCACTT 57.645 33.333 0.00 3.11 38.30 3.16
3445 3589 9.924650 ATTAGTACAAAGTCGAGTCACTTATTT 57.075 29.630 0.00 1.15 35.45 1.40
3446 3590 9.754382 TTAGTACAAAGTCGAGTCACTTATTTT 57.246 29.630 0.00 0.00 35.45 1.82
3447 3591 8.073355 AGTACAAAGTCGAGTCACTTATTTTG 57.927 34.615 0.00 7.24 35.45 2.44
3448 3592 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
3449 3593 6.053005 ACAAAGTCGAGTCACTTATTTTGGA 58.947 36.000 11.39 0.00 35.45 3.53
3450 3594 6.540914 ACAAAGTCGAGTCACTTATTTTGGAA 59.459 34.615 11.39 0.00 35.45 3.53
3451 3595 6.541111 AAGTCGAGTCACTTATTTTGGAAC 57.459 37.500 0.00 0.00 34.70 3.62
3452 3596 4.684703 AGTCGAGTCACTTATTTTGGAACG 59.315 41.667 0.00 0.00 0.00 3.95
3453 3597 3.991773 TCGAGTCACTTATTTTGGAACGG 59.008 43.478 0.00 0.00 0.00 4.44
3454 3598 3.991773 CGAGTCACTTATTTTGGAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
3455 3599 4.091509 CGAGTCACTTATTTTGGAACGGAG 59.908 45.833 0.00 0.00 0.00 4.63
3456 3600 4.324267 AGTCACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
3457 3601 3.439129 GTCACTTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
3458 3602 3.328343 TCACTTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
3459 3603 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
3460 3604 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
3461 3605 4.533311 ACTTATTTTGGAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
3462 3606 5.013391 ACTTATTTTGGAACGGAGGGAGTAA 59.987 40.000 0.00 0.00 0.00 2.24
3463 3607 3.412237 TTTTGGAACGGAGGGAGTAAG 57.588 47.619 0.00 0.00 0.00 2.34
3464 3608 2.314071 TTGGAACGGAGGGAGTAAGA 57.686 50.000 0.00 0.00 0.00 2.10
3465 3609 1.848652 TGGAACGGAGGGAGTAAGAG 58.151 55.000 0.00 0.00 0.00 2.85
3466 3610 0.460722 GGAACGGAGGGAGTAAGAGC 59.539 60.000 0.00 0.00 0.00 4.09
3467 3611 0.100861 GAACGGAGGGAGTAAGAGCG 59.899 60.000 0.00 0.00 0.00 5.03
3468 3612 0.611340 AACGGAGGGAGTAAGAGCGT 60.611 55.000 0.00 0.00 0.00 5.07
3469 3613 0.611340 ACGGAGGGAGTAAGAGCGTT 60.611 55.000 0.00 0.00 0.00 4.84
3541 3687 3.840078 TGGTGATGGAGTCAAATCTCAGA 59.160 43.478 6.61 0.00 38.90 3.27
3542 3688 4.472470 TGGTGATGGAGTCAAATCTCAGAT 59.528 41.667 6.61 0.00 38.90 2.90
3544 3690 6.156775 TGGTGATGGAGTCAAATCTCAGATAA 59.843 38.462 0.00 0.00 38.90 1.75
3545 3691 6.481644 GGTGATGGAGTCAAATCTCAGATAAC 59.518 42.308 0.00 0.00 38.90 1.89
3546 3692 7.044181 GTGATGGAGTCAAATCTCAGATAACA 58.956 38.462 0.00 0.00 38.90 2.41
3547 3693 7.010923 GTGATGGAGTCAAATCTCAGATAACAC 59.989 40.741 0.00 0.00 38.90 3.32
3548 3694 5.734720 TGGAGTCAAATCTCAGATAACACC 58.265 41.667 0.00 0.00 36.30 4.16
3549 3695 5.485353 TGGAGTCAAATCTCAGATAACACCT 59.515 40.000 10.54 0.00 36.30 4.00
3550 3696 6.013379 TGGAGTCAAATCTCAGATAACACCTT 60.013 38.462 10.54 0.00 36.30 3.50
3551 3697 7.180229 TGGAGTCAAATCTCAGATAACACCTTA 59.820 37.037 10.54 0.00 36.30 2.69
3552 3698 7.492994 GGAGTCAAATCTCAGATAACACCTTAC 59.507 40.741 0.00 0.00 36.30 2.34
3553 3699 7.036220 AGTCAAATCTCAGATAACACCTTACG 58.964 38.462 0.00 0.00 0.00 3.18
3554 3700 6.812160 GTCAAATCTCAGATAACACCTTACGT 59.188 38.462 0.00 0.00 0.00 3.57
3556 3702 6.525578 AATCTCAGATAACACCTTACGTCA 57.474 37.500 0.00 0.00 0.00 4.35
3559 3778 4.430007 TCAGATAACACCTTACGTCATGC 58.570 43.478 0.00 0.00 0.00 4.06
3562 3781 5.351465 CAGATAACACCTTACGTCATGCTTT 59.649 40.000 0.00 0.00 0.00 3.51
3581 3800 7.230849 TGCTTTGATTGTATTGATTTGGAGT 57.769 32.000 0.00 0.00 0.00 3.85
3597 3816 6.474140 TTTGGAGTGAGTACAAGTTACAGA 57.526 37.500 0.00 0.00 0.00 3.41
3609 3828 8.982723 AGTACAAGTTACAGATTGATCTACCAT 58.017 33.333 0.00 0.00 34.85 3.55
3615 3834 8.932610 AGTTACAGATTGATCTACCATGAGATT 58.067 33.333 0.00 0.00 36.27 2.40
3616 3835 8.986847 GTTACAGATTGATCTACCATGAGATTG 58.013 37.037 0.00 0.00 36.27 2.67
3648 3867 2.431942 GGCGTCAACGGTCGTCAT 60.432 61.111 4.54 0.00 40.23 3.06
3654 3873 0.896479 TCAACGGTCGTCATCCCTCA 60.896 55.000 0.00 0.00 0.00 3.86
3669 3888 8.353684 CGTCATCCCTCAACATATATAGATACC 58.646 40.741 0.00 0.00 0.00 2.73
3721 3940 6.706270 CGGTTACATCTAAGGATAAACATGCT 59.294 38.462 0.00 0.00 32.87 3.79
3725 3944 9.679661 TTACATCTAAGGATAAACATGCTGAAA 57.320 29.630 0.00 0.00 0.00 2.69
3731 3950 6.124088 AGGATAAACATGCTGAAAATCGTC 57.876 37.500 0.00 0.00 0.00 4.20
3732 3951 5.882557 AGGATAAACATGCTGAAAATCGTCT 59.117 36.000 0.00 0.00 0.00 4.18
3733 3952 6.037610 AGGATAAACATGCTGAAAATCGTCTC 59.962 38.462 0.00 0.00 0.00 3.36
3801 4020 2.307768 CTCCTAGGCCTCACGAATACA 58.692 52.381 9.68 0.00 0.00 2.29
3802 4021 2.294791 CTCCTAGGCCTCACGAATACAG 59.705 54.545 9.68 0.00 0.00 2.74
3805 4024 0.978146 AGGCCTCACGAATACAGCCT 60.978 55.000 0.00 0.00 45.72 4.58
3823 4042 1.466167 CCTGCTGGTCGACAATCTTTG 59.534 52.381 18.91 0.00 0.00 2.77
3831 4050 1.702957 TCGACAATCTTTGGGGGTCTT 59.297 47.619 0.00 0.00 34.12 3.01
3832 4051 2.107552 TCGACAATCTTTGGGGGTCTTT 59.892 45.455 0.00 0.00 34.12 2.52
3833 4052 2.228822 CGACAATCTTTGGGGGTCTTTG 59.771 50.000 0.00 0.00 34.12 2.77
3834 4053 3.496331 GACAATCTTTGGGGGTCTTTGA 58.504 45.455 0.00 0.00 34.12 2.69
3835 4054 3.230976 ACAATCTTTGGGGGTCTTTGAC 58.769 45.455 0.00 0.00 34.12 3.18
3836 4055 4.007934 ACAATCTTTGGGGGTCTTTGACC 61.008 47.826 8.14 8.14 42.61 4.02
3843 4062 3.961414 GGTCTTTGACCCGGCCCA 61.961 66.667 0.00 0.00 46.19 5.36
3844 4063 2.355115 GTCTTTGACCCGGCCCAT 59.645 61.111 0.00 0.00 0.00 4.00
3845 4064 1.605453 GTCTTTGACCCGGCCCATA 59.395 57.895 0.00 0.00 0.00 2.74
3846 4065 0.182775 GTCTTTGACCCGGCCCATAT 59.817 55.000 0.00 0.00 0.00 1.78
3847 4066 0.182537 TCTTTGACCCGGCCCATATG 59.817 55.000 0.00 0.00 0.00 1.78
3848 4067 0.106719 CTTTGACCCGGCCCATATGT 60.107 55.000 0.00 0.00 0.00 2.29
3849 4068 0.106918 TTTGACCCGGCCCATATGTC 60.107 55.000 0.00 0.00 0.00 3.06
3850 4069 1.990160 TTGACCCGGCCCATATGTCC 61.990 60.000 0.00 1.74 0.00 4.02
3881 4100 0.451783 GGCTAGCATGTTGGGAAACG 59.548 55.000 18.24 0.00 0.00 3.60
3939 4159 9.851686 ATAAGGAACACTATAAAGATGCAATGA 57.148 29.630 0.00 0.00 0.00 2.57
3940 4160 7.559590 AGGAACACTATAAAGATGCAATGAC 57.440 36.000 0.00 0.00 0.00 3.06
3941 4161 6.258727 AGGAACACTATAAAGATGCAATGACG 59.741 38.462 0.00 0.00 0.00 4.35
3942 4162 5.991328 ACACTATAAAGATGCAATGACGG 57.009 39.130 0.00 0.00 0.00 4.79
3943 4163 5.428253 ACACTATAAAGATGCAATGACGGT 58.572 37.500 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.622064 ACCTCGCAAGACTGAAGTTT 57.378 45.000 0.00 0.00 45.01 2.66
23 24 3.896648 TCAATCAAAACCTCGCAAGAC 57.103 42.857 0.00 0.00 45.01 3.01
76 77 4.657436 AGTGAAATGAGTACGGAGATCC 57.343 45.455 0.00 0.00 0.00 3.36
112 113 7.117523 GGTAGAGTGAATATTCATGAGATGCAC 59.882 40.741 20.65 17.47 39.73 4.57
217 218 2.190538 TGATGATCTGGCTCCACTCAA 58.809 47.619 0.00 0.00 0.00 3.02
218 219 1.870064 TGATGATCTGGCTCCACTCA 58.130 50.000 0.00 0.54 0.00 3.41
254 255 1.001887 TATTTGTGGGGCCGTGGTC 60.002 57.895 0.00 0.00 0.00 4.02
271 272 1.200760 ATCTGCCCTGCCTGTGTGTA 61.201 55.000 0.00 0.00 0.00 2.90
273 274 0.745845 GTATCTGCCCTGCCTGTGTG 60.746 60.000 0.00 0.00 0.00 3.82
275 276 1.069823 CTAGTATCTGCCCTGCCTGTG 59.930 57.143 0.00 0.00 0.00 3.66
291 292 8.256356 ACTAATGATCATTTGAGGCTACTAGT 57.744 34.615 28.86 18.02 32.50 2.57
364 366 4.141287 AGCCATACTTGCACACAACTTTA 58.859 39.130 0.00 0.00 0.00 1.85
365 367 2.958355 AGCCATACTTGCACACAACTTT 59.042 40.909 0.00 0.00 0.00 2.66
850 865 6.866010 TCTGGTATTTCATATGTGCATGTC 57.134 37.500 1.90 0.00 0.00 3.06
851 866 6.999871 TGATCTGGTATTTCATATGTGCATGT 59.000 34.615 1.90 0.00 0.00 3.21
878 893 3.760684 GGCAACAGAAGATCAGGTGATTT 59.239 43.478 0.00 0.00 34.37 2.17
884 899 1.280133 TCAGGGCAACAGAAGATCAGG 59.720 52.381 0.00 0.00 39.74 3.86
902 917 4.777366 TGGTGATGGAGAACAAGTATCTCA 59.223 41.667 5.96 0.00 44.13 3.27
939 955 6.366061 GCCTGTTTATTCTTTGAACATGAACC 59.634 38.462 0.00 0.00 33.31 3.62
966 982 4.517952 ACACTGAGAACTGACTGATCTG 57.482 45.455 0.00 0.00 0.00 2.90
967 983 7.946381 TTATACACTGAGAACTGACTGATCT 57.054 36.000 0.00 0.00 0.00 2.75
968 984 7.704472 CCTTTATACACTGAGAACTGACTGATC 59.296 40.741 0.00 0.00 0.00 2.92
969 985 7.179338 ACCTTTATACACTGAGAACTGACTGAT 59.821 37.037 0.00 0.00 0.00 2.90
1194 1263 0.247974 GTCTGCACGCATCATCTTGC 60.248 55.000 0.00 0.00 39.29 4.01
1212 1281 1.073706 ACCCAGTCCAAGGACCAGT 60.074 57.895 15.36 7.93 45.59 4.00
1272 1341 2.654079 CGACTTGCCTGCTCCTCCT 61.654 63.158 0.00 0.00 0.00 3.69
1367 1436 0.034089 AGCTTCAGCATTACCCACCC 60.034 55.000 0.75 0.00 45.16 4.61
1503 1572 1.066143 ACACAAAGATTCGGCCGAGAT 60.066 47.619 29.20 23.03 0.00 2.75
1563 1632 1.614227 CGTTGTCCGTGTGGTCATCG 61.614 60.000 0.00 0.00 39.10 3.84
1647 1716 0.956633 AGCTCACACCGAACGAAGTA 59.043 50.000 0.00 0.00 45.00 2.24
2037 2106 4.598894 CTCCGGATGCAGCCCTCG 62.599 72.222 16.93 3.46 0.00 4.63
2608 2677 4.240103 CGGCCCGATCATGCTCCA 62.240 66.667 0.00 0.00 0.00 3.86
2880 2949 2.125552 CCGCCGAGCAATGACAGA 60.126 61.111 0.00 0.00 0.00 3.41
2911 2980 3.914312 AGAGTTTGTCGACGTCAATGAT 58.086 40.909 17.16 0.00 0.00 2.45
3033 3145 9.920946 AAAAGTTTATATGTGACACCCATATCT 57.079 29.630 2.45 1.04 36.93 1.98
3060 3172 2.494073 GTTCATATGTCCCCCGCAAAAA 59.506 45.455 1.90 0.00 0.00 1.94
3061 3173 2.096248 GTTCATATGTCCCCCGCAAAA 58.904 47.619 1.90 0.00 0.00 2.44
3062 3174 1.283613 AGTTCATATGTCCCCCGCAAA 59.716 47.619 1.90 0.00 0.00 3.68
3063 3175 0.916086 AGTTCATATGTCCCCCGCAA 59.084 50.000 1.90 0.00 0.00 4.85
3064 3176 0.180171 CAGTTCATATGTCCCCCGCA 59.820 55.000 1.90 0.00 0.00 5.69
3065 3177 0.180406 ACAGTTCATATGTCCCCCGC 59.820 55.000 1.90 0.00 0.00 6.13
3066 3178 2.710096 AACAGTTCATATGTCCCCCG 57.290 50.000 1.90 0.00 0.00 5.73
3067 3179 4.398319 CCATAACAGTTCATATGTCCCCC 58.602 47.826 1.90 0.00 0.00 5.40
3068 3180 4.104102 TCCCATAACAGTTCATATGTCCCC 59.896 45.833 1.90 0.00 0.00 4.81
3069 3181 5.304686 TCCCATAACAGTTCATATGTCCC 57.695 43.478 1.90 0.00 0.00 4.46
3070 3182 6.828785 ACTTTCCCATAACAGTTCATATGTCC 59.171 38.462 1.90 0.00 0.00 4.02
3071 3183 7.865706 ACTTTCCCATAACAGTTCATATGTC 57.134 36.000 1.90 0.00 0.00 3.06
3072 3184 8.650143 AAACTTTCCCATAACAGTTCATATGT 57.350 30.769 1.90 0.00 0.00 2.29
3095 3207 4.445019 GGCCCAACCTTCCAACAATTTAAA 60.445 41.667 0.00 0.00 34.51 1.52
3103 3215 0.537828 TTACGGCCCAACCTTCCAAC 60.538 55.000 0.00 0.00 35.61 3.77
3108 3220 2.167662 CAAGAATTACGGCCCAACCTT 58.832 47.619 0.00 0.00 35.61 3.50
3165 3306 8.315391 TCGATGAGATAATAATCCAGCAAAAG 57.685 34.615 0.00 0.00 31.98 2.27
3166 3307 8.724229 CATCGATGAGATAATAATCCAGCAAAA 58.276 33.333 21.02 0.00 37.52 2.44
3170 3311 8.659925 AATCATCGATGAGATAATAATCCAGC 57.340 34.615 30.11 0.00 40.64 4.85
3205 3346 3.059325 GCAGCAGCTTTATCGTCAATAGG 60.059 47.826 0.00 0.00 37.91 2.57
3260 3401 2.507407 AAACATCCGGCAACATAGGT 57.493 45.000 0.00 0.00 0.00 3.08
3271 3412 7.647907 ACTACTGTTACAACTTAAACATCCG 57.352 36.000 0.00 0.00 35.21 4.18
3375 3519 7.175641 ACAAAGTTGAATCACTTATTGAGGGAG 59.824 37.037 0.00 0.00 42.21 4.30
3376 3520 7.004086 ACAAAGTTGAATCACTTATTGAGGGA 58.996 34.615 0.00 0.00 43.35 4.20
3377 3521 7.219484 ACAAAGTTGAATCACTTATTGAGGG 57.781 36.000 0.00 0.00 37.77 4.30
3378 3522 9.003658 AGTACAAAGTTGAATCACTTATTGAGG 57.996 33.333 0.00 0.00 37.77 3.86
3381 3525 9.760660 GCTAGTACAAAGTTGAATCACTTATTG 57.239 33.333 0.00 0.00 35.87 1.90
3382 3526 9.726438 AGCTAGTACAAAGTTGAATCACTTATT 57.274 29.630 0.00 0.00 35.87 1.40
3383 3527 9.726438 AAGCTAGTACAAAGTTGAATCACTTAT 57.274 29.630 0.00 0.00 35.87 1.73
3384 3528 9.555727 AAAGCTAGTACAAAGTTGAATCACTTA 57.444 29.630 0.00 0.00 35.87 2.24
3385 3529 8.451908 AAAGCTAGTACAAAGTTGAATCACTT 57.548 30.769 0.00 0.00 38.74 3.16
3387 3531 8.989980 ACTAAAGCTAGTACAAAGTTGAATCAC 58.010 33.333 0.00 0.00 36.56 3.06
3412 3556 9.778993 TGACTCGACTTTGTACTAATATTGTAC 57.221 33.333 15.51 15.51 40.27 2.90
3413 3557 9.778993 GTGACTCGACTTTGTACTAATATTGTA 57.221 33.333 0.00 0.00 0.00 2.41
3414 3558 8.521176 AGTGACTCGACTTTGTACTAATATTGT 58.479 33.333 0.00 0.00 0.00 2.71
3415 3559 8.912787 AGTGACTCGACTTTGTACTAATATTG 57.087 34.615 0.00 0.00 0.00 1.90
3419 3563 9.924650 AAATAAGTGACTCGACTTTGTACTAAT 57.075 29.630 0.00 0.00 37.38 1.73
3420 3564 9.754382 AAAATAAGTGACTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
3421 3565 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
3422 3566 7.170998 CCAAAATAAGTGACTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
3423 3567 7.170320 TCCAAAATAAGTGACTCGACTTTGTAC 59.830 37.037 0.00 0.00 37.38 2.90
3424 3568 7.211573 TCCAAAATAAGTGACTCGACTTTGTA 58.788 34.615 0.00 0.00 37.38 2.41
3425 3569 6.053005 TCCAAAATAAGTGACTCGACTTTGT 58.947 36.000 0.00 0.00 37.38 2.83
3426 3570 6.539649 TCCAAAATAAGTGACTCGACTTTG 57.460 37.500 0.00 0.00 37.38 2.77
3427 3571 6.292703 CGTTCCAAAATAAGTGACTCGACTTT 60.293 38.462 0.00 0.00 37.38 2.66
3428 3572 5.176958 CGTTCCAAAATAAGTGACTCGACTT 59.823 40.000 0.00 0.00 39.54 3.01
3429 3573 4.684703 CGTTCCAAAATAAGTGACTCGACT 59.315 41.667 0.00 0.00 0.00 4.18
3430 3574 4.143179 CCGTTCCAAAATAAGTGACTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
3431 3575 3.991773 CCGTTCCAAAATAAGTGACTCGA 59.008 43.478 0.00 0.00 0.00 4.04
3432 3576 3.991773 TCCGTTCCAAAATAAGTGACTCG 59.008 43.478 0.00 0.00 0.00 4.18
3433 3577 4.392138 CCTCCGTTCCAAAATAAGTGACTC 59.608 45.833 0.00 0.00 0.00 3.36
3434 3578 4.324267 CCTCCGTTCCAAAATAAGTGACT 58.676 43.478 0.00 0.00 0.00 3.41
3435 3579 3.439129 CCCTCCGTTCCAAAATAAGTGAC 59.561 47.826 0.00 0.00 0.00 3.67
3436 3580 3.328343 TCCCTCCGTTCCAAAATAAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
3437 3581 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
3438 3582 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3439 3583 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3440 3584 5.248934 TCTTACTCCCTCCGTTCCAAAATAA 59.751 40.000 0.00 0.00 0.00 1.40
3441 3585 4.778958 TCTTACTCCCTCCGTTCCAAAATA 59.221 41.667 0.00 0.00 0.00 1.40
3442 3586 3.585732 TCTTACTCCCTCCGTTCCAAAAT 59.414 43.478 0.00 0.00 0.00 1.82
3443 3587 2.974099 TCTTACTCCCTCCGTTCCAAAA 59.026 45.455 0.00 0.00 0.00 2.44
3444 3588 2.565834 CTCTTACTCCCTCCGTTCCAAA 59.434 50.000 0.00 0.00 0.00 3.28
3445 3589 2.176889 CTCTTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
3446 3590 1.848652 CTCTTACTCCCTCCGTTCCA 58.151 55.000 0.00 0.00 0.00 3.53
3447 3591 0.460722 GCTCTTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
3448 3592 0.100861 CGCTCTTACTCCCTCCGTTC 59.899 60.000 0.00 0.00 0.00 3.95
3449 3593 0.611340 ACGCTCTTACTCCCTCCGTT 60.611 55.000 0.00 0.00 0.00 4.44
3450 3594 0.611340 AACGCTCTTACTCCCTCCGT 60.611 55.000 0.00 0.00 0.00 4.69
3451 3595 0.531200 AAACGCTCTTACTCCCTCCG 59.469 55.000 0.00 0.00 0.00 4.63
3452 3596 3.881937 TTAAACGCTCTTACTCCCTCC 57.118 47.619 0.00 0.00 0.00 4.30
3453 3597 4.034163 GCATTTAAACGCTCTTACTCCCTC 59.966 45.833 0.00 0.00 0.00 4.30
3454 3598 3.939592 GCATTTAAACGCTCTTACTCCCT 59.060 43.478 0.00 0.00 0.00 4.20
3455 3599 3.939592 AGCATTTAAACGCTCTTACTCCC 59.060 43.478 2.28 0.00 31.16 4.30
3541 3687 5.242434 TCAAAGCATGACGTAAGGTGTTAT 58.758 37.500 0.00 0.00 46.39 1.89
3542 3688 4.633175 TCAAAGCATGACGTAAGGTGTTA 58.367 39.130 0.00 0.00 46.39 2.41
3544 3690 3.120321 TCAAAGCATGACGTAAGGTGT 57.880 42.857 0.00 0.00 46.39 4.16
3545 3691 4.083324 ACAATCAAAGCATGACGTAAGGTG 60.083 41.667 0.00 0.00 41.93 4.00
3546 3692 4.072131 ACAATCAAAGCATGACGTAAGGT 58.928 39.130 0.00 0.00 41.93 3.50
3547 3693 4.685169 ACAATCAAAGCATGACGTAAGG 57.315 40.909 0.00 0.00 41.93 2.69
3548 3694 7.463544 TCAATACAATCAAAGCATGACGTAAG 58.536 34.615 0.00 0.00 41.93 2.34
3549 3695 7.371126 TCAATACAATCAAAGCATGACGTAA 57.629 32.000 0.00 0.00 41.93 3.18
3550 3696 6.976636 TCAATACAATCAAAGCATGACGTA 57.023 33.333 0.00 1.32 41.93 3.57
3551 3697 5.878332 TCAATACAATCAAAGCATGACGT 57.122 34.783 0.00 0.00 41.93 4.34
3552 3698 7.253850 CCAAATCAATACAATCAAAGCATGACG 60.254 37.037 0.00 0.00 41.93 4.35
3553 3699 7.760794 TCCAAATCAATACAATCAAAGCATGAC 59.239 33.333 0.00 0.00 41.93 3.06
3554 3700 7.838884 TCCAAATCAATACAATCAAAGCATGA 58.161 30.769 0.00 0.00 43.67 3.07
3556 3702 7.762615 CACTCCAAATCAATACAATCAAAGCAT 59.237 33.333 0.00 0.00 0.00 3.79
3559 3778 8.517878 ACTCACTCCAAATCAATACAATCAAAG 58.482 33.333 0.00 0.00 0.00 2.77
3562 3781 8.100164 TGTACTCACTCCAAATCAATACAATCA 58.900 33.333 0.00 0.00 0.00 2.57
3581 3800 8.467598 GGTAGATCAATCTGTAACTTGTACTCA 58.532 37.037 2.72 0.00 37.76 3.41
3597 3816 8.435187 ACACATACAATCTCATGGTAGATCAAT 58.565 33.333 0.00 0.00 35.10 2.57
3609 3828 5.817296 GCCAACTGATACACATACAATCTCA 59.183 40.000 0.00 0.00 0.00 3.27
3615 3834 3.056465 TGACGCCAACTGATACACATACA 60.056 43.478 0.00 0.00 0.00 2.29
3616 3835 3.517602 TGACGCCAACTGATACACATAC 58.482 45.455 0.00 0.00 0.00 2.39
3640 3859 3.753294 ATATGTTGAGGGATGACGACC 57.247 47.619 0.00 0.00 0.00 4.79
3644 3863 8.353684 CGGTATCTATATATGTTGAGGGATGAC 58.646 40.741 0.00 0.00 0.00 3.06
3648 3867 6.134055 CCCGGTATCTATATATGTTGAGGGA 58.866 44.000 0.00 0.00 34.79 4.20
3654 3873 4.407945 GCACCCCCGGTATCTATATATGTT 59.592 45.833 0.00 0.00 32.11 2.71
3669 3888 4.109675 CAACCCTAGGCACCCCCG 62.110 72.222 2.05 0.00 39.21 5.73
3721 3940 7.837863 ACTCTAATACTTGGAGACGATTTTCA 58.162 34.615 7.18 0.00 40.34 2.69
3725 3944 7.371936 GCATACTCTAATACTTGGAGACGATT 58.628 38.462 7.18 0.00 40.34 3.34
3731 3950 6.073327 TGACGCATACTCTAATACTTGGAG 57.927 41.667 0.00 0.00 43.18 3.86
3732 3951 6.096423 ACTTGACGCATACTCTAATACTTGGA 59.904 38.462 0.00 0.00 0.00 3.53
3733 3952 6.273825 ACTTGACGCATACTCTAATACTTGG 58.726 40.000 0.00 0.00 0.00 3.61
3801 4020 1.078848 GATTGTCGACCAGCAGGCT 60.079 57.895 14.12 0.00 39.06 4.58
3802 4021 0.674895 AAGATTGTCGACCAGCAGGC 60.675 55.000 14.12 0.00 39.06 4.85
3805 4024 1.522668 CCAAAGATTGTCGACCAGCA 58.477 50.000 14.12 0.00 0.00 4.41
3809 4028 0.037734 ACCCCCAAAGATTGTCGACC 59.962 55.000 14.12 0.00 0.00 4.79
3812 4031 2.200373 AAGACCCCCAAAGATTGTCG 57.800 50.000 0.00 0.00 0.00 4.35
3813 4032 3.255888 GTCAAAGACCCCCAAAGATTGTC 59.744 47.826 0.00 0.00 0.00 3.18
3831 4050 1.529796 GACATATGGGCCGGGTCAA 59.470 57.895 2.18 0.00 0.00 3.18
3832 4051 2.448582 GGACATATGGGCCGGGTCA 61.449 63.158 2.18 0.00 0.00 4.02
3833 4052 2.397413 CTGGACATATGGGCCGGGTC 62.397 65.000 14.72 3.54 0.00 4.46
3834 4053 2.367648 TGGACATATGGGCCGGGT 60.368 61.111 2.18 0.00 0.00 5.28
3835 4054 2.116983 CTCTGGACATATGGGCCGGG 62.117 65.000 19.68 11.91 0.00 5.73
3836 4055 1.372683 CTCTGGACATATGGGCCGG 59.627 63.158 15.87 15.87 0.00 6.13
3837 4056 1.302033 GCTCTGGACATATGGGCCG 60.302 63.158 7.80 5.31 0.00 6.13
3838 4057 1.073897 GGCTCTGGACATATGGGCC 59.926 63.158 7.80 8.68 0.00 5.80
3839 4058 1.302033 CGGCTCTGGACATATGGGC 60.302 63.158 7.80 0.00 0.00 5.36
3840 4059 0.034059 GTCGGCTCTGGACATATGGG 59.966 60.000 7.80 0.00 34.56 4.00
3841 4060 0.319040 CGTCGGCTCTGGACATATGG 60.319 60.000 7.80 0.00 34.04 2.74
3842 4061 0.385751 ACGTCGGCTCTGGACATATG 59.614 55.000 0.00 0.00 34.04 1.78
3843 4062 0.385751 CACGTCGGCTCTGGACATAT 59.614 55.000 0.00 0.00 34.04 1.78
3844 4063 1.663379 CCACGTCGGCTCTGGACATA 61.663 60.000 0.00 0.00 34.04 2.29
3845 4064 2.573869 CACGTCGGCTCTGGACAT 59.426 61.111 0.00 0.00 34.04 3.06
3846 4065 3.680786 CCACGTCGGCTCTGGACA 61.681 66.667 0.00 0.00 34.04 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.