AutoCloner

Multiple sequence alignment - TraesCS6D01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G185000	chr6D	100.000	3203	0	0	1	3203	237426466	237429668	0.000000e+00	5915.0
1	TraesCS6D01G185000	chr6D	97.233	1048	18	5	838	1874	316825851	316824804	0.000000e+00	1764.0
2	TraesCS6D01G185000	chr6D	94.737	114	5	1	2089	2201	316824460	316824347	3.280000e-40	176.0
3	TraesCS6D01G185000	chr6D	86.806	144	13	4	2781	2922	316800159	316800020	4.280000e-34	156.0
4	TraesCS6D01G185000	chr6D	98.214	56	1	0	1997	2052	316824522	316824467	7.310000e-17	99.0
5	TraesCS6D01G185000	chr6D	96.296	54	2	0	1904	1957	316824809	316824756	4.400000e-14	89.8
6	TraesCS6D01G185000	chr6D	100.000	31	0	0	765	795	316826141	316826111	1.240000e-04	58.4
7	TraesCS6D01G185000	chr6A	97.050	1695	32	14	790	2476	306047795	306046111	0.000000e+00	2837.0
8	TraesCS6D01G185000	chr6A	90.977	665	50	6	1	662	306048902	306048245	0.000000e+00	887.0
9	TraesCS6D01G185000	chr6A	93.271	431	20	6	2778	3203	306045777	306045351	7.540000e-176	627.0
10	TraesCS6D01G185000	chr6A	97.810	137	3	0	659	795	306048203	306048067	1.490000e-58	237.0
11	TraesCS6D01G185000	chr6B	96.305	1651	31	14	809	2447	364901531	364903163	0.000000e+00	2684.0
12	TraesCS6D01G185000	chr6B	96.663	1049	22	6	838	1874	507620509	507621556	0.000000e+00	1731.0
13	TraesCS6D01G185000	chr6B	93.415	653	27	8	2409	3046	364903163	364903814	0.000000e+00	953.0
14	TraesCS6D01G185000	chr6B	89.954	219	17	3	441	659	364882751	364882964	8.750000e-71	278.0
15	TraesCS6D01G185000	chr6B	94.521	146	7	1	3053	3197	364929629	364929774	1.160000e-54	224.0
16	TraesCS6D01G185000	chr6B	93.860	114	5	2	2089	2201	507621901	507622013	1.530000e-38	171.0
17	TraesCS6D01G185000	chr6B	83.226	155	13	6	2781	2926	507654990	507655140	2.590000e-26	130.0
18	TraesCS6D01G185000	chr6B	98.182	55	1	0	660	714	364883017	364883071	2.630000e-16	97.1
19	TraesCS6D01G185000	chr6B	96.364	55	2	0	1998	2052	507621840	507621894	1.220000e-14	91.6
20	TraesCS6D01G185000	chr6B	85.057	87	8	2	3086	3168	136498137	136498222	2.050000e-12	84.2
21	TraesCS6D01G185000	chr6B	100.000	31	0	0	765	795	507620227	507620257	1.240000e-04	58.4
22	TraesCS6D01G185000	chr2B	83.095	840	130	12	1009	1842	491355103	491354270	0.000000e+00	754.0
23	TraesCS6D01G185000	chr2D	82.976	840	131	12	1009	1842	419052017	419051184	0.000000e+00	749.0
24	TraesCS6D01G185000	chr2D	91.111	45	3	1	2471	2515	73567805	73567762	3.450000e-05	60.2
25	TraesCS6D01G185000	chr2A	82.423	842	132	15	1009	1842	570724218	570725051	0.000000e+00	721.0
26	TraesCS6D01G185000	chr4D	98.507	67	1	0	1621	1687	177490196	177490130	5.610000e-23	119.0
27	TraesCS6D01G185000	chr7B	97.015	67	2	0	1621	1687	348950684	348950750	2.610000e-21	113.0
28	TraesCS6D01G185000	chr3D	84.286	70	10	1	2606	2674	58128081	58128012	2.060000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G185000	chr6D	237426466	237429668	3202	False	5915.00	5915	100.00000	1	3203	1	chr6D.!!$F1	3202
1	TraesCS6D01G185000	chr6D	316824347	316826141	1794	True	437.44	1764	97.29600	765	2201	5	chr6D.!!$R2	1436
2	TraesCS6D01G185000	chr6A	306045351	306048902	3551	True	1147.00	2837	94.77700	1	3203	4	chr6A.!!$R1	3202
3	TraesCS6D01G185000	chr6B	364901531	364903814	2283	False	1818.50	2684	94.86000	809	3046	2	chr6B.!!$F5	2237
4	TraesCS6D01G185000	chr6B	507620227	507622013	1786	False	513.00	1731	96.72175	765	2201	4	chr6B.!!$F6	1436
5	TraesCS6D01G185000	chr2B	491354270	491355103	833	True	754.00	754	83.09500	1009	1842	1	chr2B.!!$R1	833
6	TraesCS6D01G185000	chr2D	419051184	419052017	833	True	749.00	749	82.97600	1009	1842	1	chr2D.!!$R2	833
7	TraesCS6D01G185000	chr2A	570724218	570725051	833	False	721.00	721	82.42300	1009	1842	1	chr2A.!!$F1	833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
194	195	0.313672	GCGCTCACCAAAAACATCCA	59.686	50.0	0.0	0.0	0.0	3.41	F
510	512	0.673333	TGCAGCGACGATCCAATGTT	60.673	50.0	0.0	0.0	0.0	2.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1404	1752	2.029964	TTGAACTGGGCGACGACC	59.970	61.111	14.55	14.55	0.0	4.79	R
2391	2984	0.387565	ATGTTTCCGTTGCAACCCAC	59.612	50.000	23.42	14.45	0.0	4.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	2.277501	GCGACATGGATTGCACGC	60.278	61.111	0.00	0.00	43.27	5.34
66	67	2.125512	GACGTGTAGGGCCAGCAG	60.126	66.667	6.18	1.23	0.00	4.24
90	91	1.000233	TGGCCCACCCATCATTGTC	60.000	57.895	0.00	0.00	39.18	3.18
91	92	1.307647	GGCCCACCCATCATTGTCT	59.692	57.895	0.00	0.00	0.00	3.41
92	93	0.550914	GGCCCACCCATCATTGTCTA	59.449	55.000	0.00	0.00	0.00	2.59
102	103	6.042552	CACCCATCATTGTCTAGTAGGAAGAT	59.957	42.308	0.00	0.00	0.00	2.40
134	135	2.027625	CGTCGGCTCACCCTGTTTC	61.028	63.158	0.00	0.00	0.00	2.78
145	146	0.813184	CCCTGTTTCTCGCATGCATT	59.187	50.000	19.57	0.00	0.00	3.56
150	151	4.277257	TGTTTCTCGCATGCATTACATC	57.723	40.909	19.57	2.80	36.64	3.06
156	157	1.959085	CATGCATTACATCGCCCCC	59.041	57.895	0.00	0.00	36.64	5.40
157	158	0.822944	CATGCATTACATCGCCCCCA	60.823	55.000	0.00	0.00	36.64	4.96
158	159	0.823356	ATGCATTACATCGCCCCCAC	60.823	55.000	0.00	0.00	31.52	4.61
159	160	2.542907	GCATTACATCGCCCCCACG	61.543	63.158	0.00	0.00	0.00	4.94
161	162	3.767630	ATTACATCGCCCCCACGCC	62.768	63.158	0.00	0.00	0.00	5.68
176	177	2.820037	GCCTGTCTGCCGGTAAGC	60.820	66.667	1.90	0.00	0.00	3.09
194	195	0.313672	GCGCTCACCAAAAACATCCA	59.686	50.000	0.00	0.00	0.00	3.41
198	199	2.100584	GCTCACCAAAAACATCCACACA	59.899	45.455	0.00	0.00	0.00	3.72
206	207	6.102663	CCAAAAACATCCACACAAACACTAA	58.897	36.000	0.00	0.00	0.00	2.24
209	210	3.537580	ACATCCACACAAACACTAACGT	58.462	40.909	0.00	0.00	0.00	3.99
214	215	4.338964	TCCACACAAACACTAACGTAGAGA	59.661	41.667	4.50	0.00	0.00	3.10
251	252	1.068055	CGCTTACACGTAGGACCAACT	60.068	52.381	0.00	0.00	0.00	3.16
258	259	1.338769	ACGTAGGACCAACTGCCATTC	60.339	52.381	0.00	0.00	0.00	2.67
321	322	2.031012	TGTCGTTCCAGCAGGCTG	59.969	61.111	10.94	10.94	43.26	4.85
356	357	2.582498	AAGGACGCGCGATGCTAC	60.582	61.111	39.36	15.62	43.27	3.58
357	358	3.350909	AAGGACGCGCGATGCTACA	62.351	57.895	39.36	0.00	43.27	2.74
359	360	2.878991	GACGCGCGATGCTACACA	60.879	61.111	39.36	0.00	43.27	3.72
361	362	4.251909	CGCGCGATGCTACACACG	62.252	66.667	28.94	0.00	43.27	4.49
369	370	4.520846	GCTACACACGCATGCGGC	62.521	66.667	39.95	28.81	44.69	6.53
464	465	1.444933	TCACCCCCAATGAACTCACT	58.555	50.000	0.00	0.00	0.00	3.41
483	485	3.246699	CACTACACGGTGAAAACGACAAT	59.753	43.478	16.29	0.00	39.34	2.71
507	509	1.331756	GATTTGCAGCGACGATCCAAT	59.668	47.619	0.00	0.00	0.00	3.16
510	512	0.673333	TGCAGCGACGATCCAATGTT	60.673	50.000	0.00	0.00	0.00	2.71
530	532	1.082104	GGCAGCGAAACAAAGACCG	60.082	57.895	0.00	0.00	0.00	4.79
537	539	1.263217	CGAAACAAAGACCGGGTTGAG	59.737	52.381	18.35	3.25	0.00	3.02
538	540	2.294979	GAAACAAAGACCGGGTTGAGT	58.705	47.619	18.35	3.85	0.00	3.41
549	551	3.129988	ACCGGGTTGAGTAAGATCTAACG	59.870	47.826	6.32	0.00	0.00	3.18
576	578	2.546494	CGATGCAAATCGGGGGAGC	61.546	63.158	1.69	0.00	40.12	4.70
736	783	8.771766	GCCTCTTTTATTAGAGTATTTTACCCG	58.228	37.037	0.00	0.00	40.04	5.28
758	805	6.237542	CCCGATCATGCTCAATTTTAAAAACG	60.238	38.462	4.44	0.00	0.00	3.60
759	806	6.307800	CCGATCATGCTCAATTTTAAAAACGT	59.692	34.615	4.44	0.00	0.00	3.99
1404	1752	2.357517	AACGAGGTGCTCAAGGCG	60.358	61.111	0.00	0.00	45.43	5.52
1896	2244	5.597806	TGGTCACAGTACTTTAGTCACTTG	58.402	41.667	0.00	0.00	0.00	3.16
1963	2484	6.542735	ACTTCAGATGCTTCGACATAGTAGTA	59.457	38.462	0.00	0.00	0.00	1.82
1964	2485	7.229707	ACTTCAGATGCTTCGACATAGTAGTAT	59.770	37.037	0.00	0.00	0.00	2.12
1965	2486	7.511959	TCAGATGCTTCGACATAGTAGTATT	57.488	36.000	0.00	0.00	0.00	1.89
1966	2487	7.941919	TCAGATGCTTCGACATAGTAGTATTT	58.058	34.615	0.00	0.00	0.00	1.40
1969	2490	9.680315	AGATGCTTCGACATAGTAGTATTTTAC	57.320	33.333	0.00	0.00	0.00	2.01
2055	2628	6.743575	GTTGCCAACCTATGCTATATTAGG	57.256	41.667	0.00	0.00	40.74	2.69
2056	2629	5.435686	TGCCAACCTATGCTATATTAGGG	57.564	43.478	3.75	0.00	39.49	3.53
2057	2630	4.849810	TGCCAACCTATGCTATATTAGGGT	59.150	41.667	3.75	0.00	39.49	4.34
2058	2631	5.045869	TGCCAACCTATGCTATATTAGGGTC	60.046	44.000	3.75	0.00	39.49	4.46
2059	2632	5.629366	GCCAACCTATGCTATATTAGGGTCC	60.629	48.000	3.75	0.00	39.49	4.46
2060	2633	5.104485	CCAACCTATGCTATATTAGGGTCCC	60.104	48.000	0.00	0.00	39.49	4.46
2061	2634	5.570174	ACCTATGCTATATTAGGGTCCCT	57.430	43.478	16.73	16.73	39.49	4.20
2062	2635	6.685862	ACCTATGCTATATTAGGGTCCCTA	57.314	41.667	14.22	14.22	39.49	3.53
2063	2636	7.253566	ACCTATGCTATATTAGGGTCCCTAT	57.746	40.000	18.89	7.68	39.49	2.57
2064	2637	8.372698	ACCTATGCTATATTAGGGTCCCTATA	57.627	38.462	18.89	12.74	39.49	1.31
2065	2638	8.982764	ACCTATGCTATATTAGGGTCCCTATAT	58.017	37.037	18.89	17.87	39.49	0.86
2066	2639	9.845214	CCTATGCTATATTAGGGTCCCTATATT	57.155	37.037	18.89	9.27	35.87	1.28
2130	2720	5.163301	GGTCCTCTATGGTTATTGCTCAGAA	60.163	44.000	0.00	0.00	37.07	3.02
2391	2984	9.609950	GAAGTATACTAACTAGCTATTTGACCG	57.390	37.037	5.65	0.00	0.00	4.79
2394	2987	5.007385	ACTAACTAGCTATTTGACCGTGG	57.993	43.478	6.60	0.00	0.00	4.94
2469	3100	8.438513	CACCGTATTCTAGATTTTGATAGCATG	58.561	37.037	0.00	0.00	0.00	4.06
2489	3120	8.177119	AGCATGTTATTTAGTTGAGGTTTTGA	57.823	30.769	0.00	0.00	0.00	2.69
2503	3134	9.358872	GTTGAGGTTTTGATAAGATTTTGATCC	57.641	33.333	0.00	0.00	0.00	3.36
2526	3165	1.761711	TTGGGTATGGACAGGGGAAA	58.238	50.000	0.00	0.00	0.00	3.13
2564	3203	3.994392	TGAGTCAAGATTTCGGTAACAGC	59.006	43.478	0.00	0.00	0.00	4.40
2617	3256	6.209192	TGCATGACATGGTTTTTGAGAAGTAT	59.791	34.615	17.03	0.00	0.00	2.12
2675	3314	5.665381	ATGTTGGTTTTTATTTTGTGCGG	57.335	34.783	0.00	0.00	0.00	5.69
2681	3320	7.178712	TGGTTTTTATTTTGTGCGGTATTTG	57.821	32.000	0.00	0.00	0.00	2.32
2745	3389	1.079057	GAGGCGTGAGGGAGGAAAC	60.079	63.158	0.00	0.00	0.00	2.78
2759	3403	0.399075	GGAAACAACCGGGAAGGAGA	59.601	55.000	6.32	0.00	45.00	3.71
2825	3489	0.187361	AACAAAGGGTAGCTTGGCCA	59.813	50.000	0.00	0.00	0.00	5.36
2874	3539	4.265073	AGTTCCATTATGTCCTTGTGCTC	58.735	43.478	0.00	0.00	0.00	4.26
2918	3583	6.273260	AGAGGTATGATGGCAATATTGGTACT	59.727	38.462	17.02	0.00	0.00	2.73
3012	3680	4.718940	AGTCTCAACCACAAAAACCAAG	57.281	40.909	0.00	0.00	0.00	3.61
3013	3681	4.086457	AGTCTCAACCACAAAAACCAAGT	58.914	39.130	0.00	0.00	0.00	3.16
3046	3714	6.896883	AGTAACTTGTAACCCTTCTGTTCTT	58.103	36.000	0.00	0.00	0.00	2.52
3047	3715	7.344134	AGTAACTTGTAACCCTTCTGTTCTTT	58.656	34.615	0.00	0.00	0.00	2.52
3191	3859	5.449588	CCATAAGCGATCAATTGCAGTCTTT	60.450	40.000	0.00	0.44	39.70	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	2.537560	GCAATCCATGTCGCTCCGG	61.538	63.158	0.00	0.00	0.00	5.14
16	17	1.723870	GTGCAATCCATGTCGCTCC	59.276	57.895	0.00	0.00	0.00	4.70
17	18	1.349627	CGTGCAATCCATGTCGCTC	59.650	57.895	0.00	0.00	0.00	5.03
66	67	2.604382	ATGGGTGGGCCAGTTTGC	60.604	61.111	6.40	0.00	36.17	3.68
75	76	3.071602	CCTACTAGACAATGATGGGTGGG	59.928	52.174	0.00	0.00	0.00	4.61
90	91	2.032620	ACACCCGCATCTTCCTACTAG	58.967	52.381	0.00	0.00	0.00	2.57
91	92	1.754803	CACACCCGCATCTTCCTACTA	59.245	52.381	0.00	0.00	0.00	1.82
92	93	0.537188	CACACCCGCATCTTCCTACT	59.463	55.000	0.00	0.00	0.00	2.57
130	131	3.283256	CGATGTAATGCATGCGAGAAAC	58.717	45.455	14.09	7.31	38.06	2.78
134	135	0.110509	GGCGATGTAATGCATGCGAG	60.111	55.000	14.09	0.00	38.06	5.03
159	160	2.820037	GCTTACCGGCAGACAGGC	60.820	66.667	0.00	0.00	39.93	4.85
161	162	3.188786	GCGCTTACCGGCAGACAG	61.189	66.667	0.00	0.00	37.44	3.51
162	163	3.642778	GAGCGCTTACCGGCAGACA	62.643	63.158	13.26	0.00	37.44	3.41
163	164	2.886124	GAGCGCTTACCGGCAGAC	60.886	66.667	13.26	0.00	37.44	3.51
164	165	3.378602	TGAGCGCTTACCGGCAGA	61.379	61.111	13.26	0.00	37.44	4.26
165	166	3.188786	GTGAGCGCTTACCGGCAG	61.189	66.667	20.85	0.00	37.44	4.85
166	167	4.752879	GGTGAGCGCTTACCGGCA	62.753	66.667	32.36	12.87	37.44	5.69
167	168	4.752879	TGGTGAGCGCTTACCGGC	62.753	66.667	36.86	20.17	41.64	6.13
168	169	1.231958	TTTTGGTGAGCGCTTACCGG	61.232	55.000	36.86	0.00	41.64	5.28
169	170	0.589223	TTTTTGGTGAGCGCTTACCG	59.411	50.000	36.86	0.00	41.64	4.02
176	177	1.336440	TGTGGATGTTTTTGGTGAGCG	59.664	47.619	0.00	0.00	0.00	5.03
194	195	7.599630	TTTTTCTCTACGTTAGTGTTTGTGT	57.400	32.000	0.00	0.00	0.00	3.72
258	259	0.108186	TGCAATGACGAGTAGGCCAG	60.108	55.000	5.01	0.00	0.00	4.85
297	298	4.701663	CTGGAACGACACAGCCAT	57.298	55.556	0.00	0.00	0.00	4.40
301	302	2.320587	GCCTGCTGGAACGACACAG	61.321	63.158	14.77	0.00	37.76	3.66
407	408	3.129913	CTTGCGCTATTGGCTGGGC	62.130	63.158	9.73	0.00	41.57	5.36
464	465	6.619744	TCTATATTGTCGTTTTCACCGTGTA	58.380	36.000	0.00	0.00	0.00	2.90
483	485	3.005367	TGGATCGTCGCTGCAAATCTATA	59.995	43.478	0.00	0.00	0.00	1.31
507	509	2.289547	GTCTTTGTTTCGCTGCCTAACA	59.710	45.455	9.36	9.36	0.00	2.41
510	512	1.519408	GGTCTTTGTTTCGCTGCCTA	58.481	50.000	0.00	0.00	0.00	3.93
530	532	4.680702	GTCCGTTAGATCTTACTCAACCC	58.319	47.826	9.97	0.00	0.00	4.11
537	539	5.088739	TCGTTTTCGTCCGTTAGATCTTAC	58.911	41.667	0.00	0.00	44.46	2.34
538	540	5.295431	TCGTTTTCGTCCGTTAGATCTTA	57.705	39.130	0.00	0.00	44.46	2.10
549	551	2.166007	CGATTTGCATCGTTTTCGTCC	58.834	47.619	1.50	0.00	46.23	4.79
1404	1752	2.029964	TTGAACTGGGCGACGACC	59.970	61.111	14.55	14.55	0.00	4.79
1896	2244	4.723309	AGTGAAGGATAATTGGGCATCTC	58.277	43.478	0.00	0.00	0.00	2.75
1969	2490	7.863375	AGAAGTCTCCATTCTACGATAAAATCG	59.137	37.037	7.71	7.71	42.53	3.34
2053	2626	6.571624	TCATAAGCACTAATATAGGGACCCT	58.428	40.000	19.48	19.48	37.71	4.34
2054	2627	6.869206	TCATAAGCACTAATATAGGGACCC	57.131	41.667	0.59	0.59	0.00	4.46
2055	2628	6.763610	GCATCATAAGCACTAATATAGGGACC	59.236	42.308	0.00	0.00	0.00	4.46
2056	2629	6.477033	CGCATCATAAGCACTAATATAGGGAC	59.523	42.308	0.00	0.00	0.00	4.46
2057	2630	6.154534	ACGCATCATAAGCACTAATATAGGGA	59.845	38.462	0.00	0.00	0.00	4.20
2058	2631	6.341316	ACGCATCATAAGCACTAATATAGGG	58.659	40.000	0.00	0.00	0.00	3.53
2059	2632	7.761704	AGAACGCATCATAAGCACTAATATAGG	59.238	37.037	0.00	0.00	0.00	2.57
2060	2633	8.694975	AGAACGCATCATAAGCACTAATATAG	57.305	34.615	0.00	0.00	0.00	1.31
2061	2634	9.489084	AAAGAACGCATCATAAGCACTAATATA	57.511	29.630	0.00	0.00	0.00	0.86
2062	2635	7.969536	AAGAACGCATCATAAGCACTAATAT	57.030	32.000	0.00	0.00	0.00	1.28
2063	2636	7.786178	AAAGAACGCATCATAAGCACTAATA	57.214	32.000	0.00	0.00	0.00	0.98
2064	2637	6.683974	AAAGAACGCATCATAAGCACTAAT	57.316	33.333	0.00	0.00	0.00	1.73
2065	2638	6.494893	AAAAGAACGCATCATAAGCACTAA	57.505	33.333	0.00	0.00	0.00	2.24
2066	2639	6.494893	AAAAAGAACGCATCATAAGCACTA	57.505	33.333	0.00	0.00	0.00	2.74
2067	2640	5.376854	AAAAAGAACGCATCATAAGCACT	57.623	34.783	0.00	0.00	0.00	4.40
2130	2720	7.053498	ACCAATAATTCAAAAACCAAGTTGCT	58.947	30.769	0.00	0.00	0.00	3.91
2391	2984	0.387565	ATGTTTCCGTTGCAACCCAC	59.612	50.000	23.42	14.45	0.00	4.61
2394	2987	7.971722	ACTAATATTTATGTTTCCGTTGCAACC	59.028	33.333	23.42	9.73	0.00	3.77
2480	3111	7.985476	TCGGATCAAAATCTTATCAAAACCTC	58.015	34.615	0.00	0.00	32.12	3.85
2489	3120	8.796475	CATACCCAAATCGGATCAAAATCTTAT	58.204	33.333	0.00	0.00	36.56	1.73
2503	3134	1.476833	CCCCTGTCCATACCCAAATCG	60.477	57.143	0.00	0.00	0.00	3.34
2555	3194	7.867445	AAACAATTAAAATCAGCTGTTACCG	57.133	32.000	14.67	0.00	0.00	4.02
2649	3288	8.286097	CCGCACAAAATAAAAACCAACATAAAT	58.714	29.630	0.00	0.00	0.00	1.40
2674	3313	9.474920	TTTGTTTTGATGATCTCAACAAATACC	57.525	29.630	21.22	7.95	44.30	2.73
2681	3320	5.841810	TGGGTTTGTTTTGATGATCTCAAC	58.158	37.500	6.99	0.00	43.54	3.18
2745	3389	1.555075	TCTTCATCTCCTTCCCGGTTG	59.445	52.381	0.00	0.00	0.00	3.77
2759	3403	3.515901	GGAGTTGGTAGTGTCCTCTTCAT	59.484	47.826	0.00	0.00	0.00	2.57
2825	3489	8.753497	ACAAAGACTCAAATAAAAGAACTCCT	57.247	30.769	0.00	0.00	0.00	3.69
2918	3583	1.140852	CCAGGGATAGGTGATGCGAAA	59.859	52.381	0.00	0.00	0.00	3.46
3078	3746	1.070289	GTCTCCCTCACGGAACAAAGT	59.930	52.381	0.00	0.00	41.40	2.66
3097	3765	3.644966	ACAAATATGATGACACGGGGT	57.355	42.857	0.00	0.00	0.00	4.95
3098	3766	4.199310	AGAACAAATATGATGACACGGGG	58.801	43.478	0.00	0.00	0.00	5.73
3108	3776	5.939883	CCTTCCACACAGAGAACAAATATGA	59.060	40.000	0.00	0.00	0.00	2.15
3154	3822	1.981256	CTTATGGTGCACCCCCATAC	58.019	55.000	32.62	6.75	43.04	2.39
3157	3825	2.358619	GCTTATGGTGCACCCCCA	59.641	61.111	32.62	15.55	36.16	4.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.