AutoCloner

Multiple sequence alignment - TraesCS6D01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G183300	chr6D	100.000	4619	0	0	1	4619	220292672	220297290	0.000000e+00	8530.0
1	TraesCS6D01G183300	chr6A	95.896	2120	50	14	2506	4619	283931601	283933689	0.000000e+00	3398.0
2	TraesCS6D01G183300	chr6A	93.295	2237	108	23	1	2224	283926716	283928923	0.000000e+00	3262.0
3	TraesCS6D01G183300	chr6A	86.585	82	10	1	1285	1366	283933210	283933290	6.370000e-14	89.8
4	TraesCS6D01G183300	chrUn	96.127	1730	35	4	2506	4221	314074428	314076139	0.000000e+00	2795.0
5	TraesCS6D01G183300	chrUn	96.127	1730	35	4	2506	4221	314078160	314079871	0.000000e+00	2795.0
6	TraesCS6D01G183300	chrUn	96.127	1730	35	4	2506	4221	321289328	321287617	0.000000e+00	2795.0
7	TraesCS6D01G183300	chrUn	95.051	1657	49	15	190	1829	289920405	289918765	0.000000e+00	2575.0
8	TraesCS6D01G183300	chrUn	93.284	402	25	1	4220	4619	314076175	314076576	3.980000e-165	592.0
9	TraesCS6D01G183300	chrUn	93.284	402	25	1	4220	4619	314079907	314080308	3.980000e-165	592.0
10	TraesCS6D01G183300	chrUn	93.284	402	25	1	4220	4619	321287581	321287180	3.980000e-165	592.0
11	TraesCS6D01G183300	chrUn	93.261	371	15	5	1469	1829	403545616	403545246	5.260000e-149	538.0
12	TraesCS6D01G183300	chrUn	78.873	213	44	1	1774	1985	41529312	41529524	4.820000e-30	143.0
13	TraesCS6D01G183300	chr4B	80.282	710	112	18	1796	2483	548766514	548765811	1.150000e-140	510.0
14	TraesCS6D01G183300	chr4B	76.560	657	118	20	1846	2482	94825008	94825648	1.240000e-85	327.0
15	TraesCS6D01G183300	chr4B	77.539	512	96	13	1985	2483	369481270	369481775	1.630000e-74	291.0
16	TraesCS6D01G183300	chr4D	79.076	736	126	14	1771	2483	441900627	441899897	8.990000e-132	481.0
17	TraesCS6D01G183300	chr4D	77.515	676	117	20	1824	2483	371788915	371788259	1.570000e-99	374.0
18	TraesCS6D01G183300	chr2D	78.817	727	134	14	1767	2482	50440589	50439872	5.410000e-129	472.0
19	TraesCS6D01G183300	chr2D	76.812	345	58	13	1839	2164	528505894	528506235	1.710000e-39	174.0
20	TraesCS6D01G183300	chr7D	80.125	639	98	16	1831	2445	500590637	500590004	2.530000e-122	449.0
21	TraesCS6D01G183300	chr7D	77.994	668	119	14	1802	2445	96505026	96504363	1.200000e-105	394.0
22	TraesCS6D01G183300	chr5A	77.562	722	125	21	1774	2477	146935702	146935000	7.200000e-108	401.0
23	TraesCS6D01G183300	chr1B	76.913	732	139	20	1774	2483	94043984	94043261	5.600000e-104	388.0
24	TraesCS6D01G183300	chr2B	77.129	634	118	13	1831	2447	637991263	637990640	4.430000e-90	342.0
25	TraesCS6D01G183300	chr6B	76.177	701	120	24	1771	2437	617458930	617458243	4.460000e-85	326.0
26	TraesCS6D01G183300	chr1D	76.609	637	114	21	1830	2445	493702355	493701733	7.460000e-83	318.0
27	TraesCS6D01G183300	chr7B	80.095	422	77	5	2026	2443	50980554	50980136	1.610000e-79	307.0
28	TraesCS6D01G183300	chr5B	77.103	214	46	3	1774	1985	281450235	281450447	2.260000e-23	121.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G183300	chr6D	220292672	220297290	4618	False	8530.000000	8530	100.000000	1	4619	1	chr6D.!!$F1	4618
1	TraesCS6D01G183300	chr6A	283926716	283933689	6973	False	2249.933333	3398	91.925333	1	4619	3	chr6A.!!$F1	4618
2	TraesCS6D01G183300	chrUn	289918765	289920405	1640	True	2575.000000	2575	95.051000	190	1829	1	chrUn.!!$R1	1639
3	TraesCS6D01G183300	chrUn	314074428	314080308	5880	False	1693.500000	2795	94.705500	2506	4619	4	chrUn.!!$F2	2113
4	TraesCS6D01G183300	chrUn	321287180	321289328	2148	True	1693.500000	2795	94.705500	2506	4619	2	chrUn.!!$R3	2113
5	TraesCS6D01G183300	chr4B	548765811	548766514	703	True	510.000000	510	80.282000	1796	2483	1	chr4B.!!$R1	687
6	TraesCS6D01G183300	chr4B	94825008	94825648	640	False	327.000000	327	76.560000	1846	2482	1	chr4B.!!$F1	636
7	TraesCS6D01G183300	chr4B	369481270	369481775	505	False	291.000000	291	77.539000	1985	2483	1	chr4B.!!$F2	498
8	TraesCS6D01G183300	chr4D	441899897	441900627	730	True	481.000000	481	79.076000	1771	2483	1	chr4D.!!$R2	712
9	TraesCS6D01G183300	chr4D	371788259	371788915	656	True	374.000000	374	77.515000	1824	2483	1	chr4D.!!$R1	659
10	TraesCS6D01G183300	chr2D	50439872	50440589	717	True	472.000000	472	78.817000	1767	2482	1	chr2D.!!$R1	715
11	TraesCS6D01G183300	chr7D	500590004	500590637	633	True	449.000000	449	80.125000	1831	2445	1	chr7D.!!$R2	614
12	TraesCS6D01G183300	chr7D	96504363	96505026	663	True	394.000000	394	77.994000	1802	2445	1	chr7D.!!$R1	643
13	TraesCS6D01G183300	chr5A	146935000	146935702	702	True	401.000000	401	77.562000	1774	2477	1	chr5A.!!$R1	703
14	TraesCS6D01G183300	chr1B	94043261	94043984	723	True	388.000000	388	76.913000	1774	2483	1	chr1B.!!$R1	709
15	TraesCS6D01G183300	chr2B	637990640	637991263	623	True	342.000000	342	77.129000	1831	2447	1	chr2B.!!$R1	616
16	TraesCS6D01G183300	chr6B	617458243	617458930	687	True	326.000000	326	76.177000	1771	2437	1	chr6B.!!$R1	666
17	TraesCS6D01G183300	chr1D	493701733	493702355	622	True	318.000000	318	76.609000	1830	2445	1	chr1D.!!$R1	615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
239	241	0.393808	TAATCTTCCGCCAGGTTGCC	60.394	55.0	0.00	0.00	39.05	4.52	F
1663	1675	0.114364	ACATCTTGGGGTTGGTTCCC	59.886	55.0	0.00	0.00	46.31	3.97	F
2086	2145	0.473326	GCTGCTCCTCCTCCATCATT	59.527	55.0	0.00	0.00	0.00	2.57	F
2503	3815	0.460311	AGTCCGCAAACTAGGATCGG	59.540	55.0	8.17	8.17	38.97	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2031	2087	0.460284	GGCTATGAGGTCACCGTGTG	60.460	60.000	0.00	0.00	34.45	3.82	R
2494	3806	0.389391	ACGACCATTGCCGATCCTAG	59.611	55.000	0.00	0.00	0.00	3.02	R
3159	9374	1.010462	CCATCACATGCATGACGCG	60.010	57.895	32.75	16.88	46.97	6.01	R
4356	10623	0.100146	CCGACCGACTAACTAGGCAC	59.900	60.000	0.00	0.00	0.00	5.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	1.541233	GGTATCCACCGCCTTCATCAG	60.541	57.143	0.00	0.00	34.36	2.90
28	29	2.185350	CCTTCATCAGCCGCGACT	59.815	61.111	8.23	0.00	0.00	4.18
42	43	1.528824	CGACTGAAGCCCCATGGAT	59.471	57.895	15.22	0.00	0.00	3.41
46	47	2.294170	CTGAAGCCCCATGGATGCCT	62.294	60.000	15.22	5.06	0.00	4.75
89	91	3.077907	CGGGGACACACAGGGATT	58.922	61.111	0.00	0.00	0.00	3.01
107	109	0.948623	TTCAGAACACCGTCGCATGG	60.949	55.000	0.00	0.00	0.00	3.66
132	134	2.031012	CAGCAAGCACCCAGACGA	59.969	61.111	0.00	0.00	0.00	4.20
149	151	1.000866	GAGCCCATTCCCTTGCCTT	59.999	57.895	0.00	0.00	0.00	4.35
150	152	1.305549	AGCCCATTCCCTTGCCTTG	60.306	57.895	0.00	0.00	0.00	3.61
159	161	4.047059	CTTGCCTTGCGCCACCTG	62.047	66.667	4.18	0.00	36.24	4.00
184	186	2.052690	CCTCGGTGACAGATCCGGT	61.053	63.158	0.00	0.00	45.79	5.28
231	233	4.334759	GGTTTCTACCTTTAATCTTCCGCC	59.665	45.833	0.00	0.00	41.53	6.13
233	235	4.402056	TCTACCTTTAATCTTCCGCCAG	57.598	45.455	0.00	0.00	0.00	4.85
235	237	1.633945	ACCTTTAATCTTCCGCCAGGT	59.366	47.619	0.00	0.00	39.05	4.00
236	238	2.041216	ACCTTTAATCTTCCGCCAGGTT	59.959	45.455	0.00	0.00	39.05	3.50
237	239	2.423538	CCTTTAATCTTCCGCCAGGTTG	59.576	50.000	0.00	0.00	39.05	3.77
238	240	1.459450	TTAATCTTCCGCCAGGTTGC	58.541	50.000	0.00	0.00	39.05	4.17
239	241	0.393808	TAATCTTCCGCCAGGTTGCC	60.394	55.000	0.00	0.00	39.05	4.52
545	555	1.733399	GACGACGCACCAGAAGGAC	60.733	63.158	0.00	0.00	38.69	3.85
816	826	1.296056	AACGAGCGTTATTGCGGCTT	61.296	50.000	6.46	0.00	40.67	4.35
928	938	2.124507	CTTTGGTCTCCGGGAAGCCA	62.125	60.000	13.34	13.34	0.00	4.75
1663	1675	0.114364	ACATCTTGGGGTTGGTTCCC	59.886	55.000	0.00	0.00	46.31	3.97
1666	1678	0.938192	TCTTGGGGTTGGTTCCCTTT	59.062	50.000	1.72	0.00	46.27	3.11
1854	1881	4.444838	CGGACACGGATGCGGGAA	62.445	66.667	18.37	0.00	36.18	3.97
1889	1917	3.621268	TGCTAGTCGCATACATTTTCACC	59.379	43.478	0.00	0.00	45.47	4.02
1905	1933	3.928727	TCACCGTAACTCGAATCAACT	57.071	42.857	0.00	0.00	42.86	3.16
1962	1990	0.525761	AACACGGCGGATTTCATTGG	59.474	50.000	13.24	0.00	0.00	3.16
2016	2066	9.112725	TCCAGTGAACTAAAAACCTAAAACTAC	57.887	33.333	0.00	0.00	0.00	2.73
2018	2068	9.712359	CAGTGAACTAAAAACCTAAAACTACAC	57.288	33.333	0.00	0.00	0.00	2.90
2019	2069	9.676861	AGTGAACTAAAAACCTAAAACTACACT	57.323	29.630	0.00	0.00	0.00	3.55
2086	2145	0.473326	GCTGCTCCTCCTCCATCATT	59.527	55.000	0.00	0.00	0.00	2.57
2098	2159	1.305219	CCATCATTGTTGCCCGTCGT	61.305	55.000	0.00	0.00	0.00	4.34
2287	3596	2.847754	TTGGAGGCGTCGTCGTTGA	61.848	57.895	3.66	0.00	39.49	3.18
2329	3641	1.588139	GACCATTCCTCGCCGTACG	60.588	63.158	8.69	8.69	45.62	3.67
2498	3810	4.496670	CGGAGTCCGCAAACTAGG	57.503	61.111	20.50	0.00	41.17	3.02
2499	3811	1.888018	CGGAGTCCGCAAACTAGGA	59.112	57.895	20.50	0.00	41.17	2.94
2501	3813	1.536284	CGGAGTCCGCAAACTAGGATC	60.536	57.143	20.50	0.00	41.17	3.36
2502	3814	1.536284	GGAGTCCGCAAACTAGGATCG	60.536	57.143	0.00	0.00	38.97	3.69
2503	3815	0.460311	AGTCCGCAAACTAGGATCGG	59.540	55.000	8.17	8.17	38.97	4.18
2613	8828	2.125106	GAGAAGGGCGGCGACAAT	60.125	61.111	17.61	0.71	0.00	2.71
2799	9014	2.805671	AGAGATCTACATCGAGTCGCTG	59.194	50.000	14.47	14.47	33.75	5.18
2976	9191	0.890542	AGCGCAAGATGCAGACCAAA	60.891	50.000	11.47	0.00	45.36	3.28
3159	9374	1.668419	CCTTCCCGACCATTCATGAC	58.332	55.000	0.00	0.00	0.00	3.06
3659	9874	3.336568	AGAGCCAGGCCAGCACAT	61.337	61.111	18.87	0.00	0.00	3.21
3733	9948	4.833478	ACATATCTGAGGAGTGCACTTT	57.167	40.909	22.65	12.79	0.00	2.66
3815	10033	1.676746	CGGACTCGTTCATCCCTCTA	58.323	55.000	0.00	0.00	0.00	2.43
3828	10057	3.967467	TCCCTCTAAGTAGACCGGATT	57.033	47.619	9.46	0.00	0.00	3.01
3934	10163	1.730121	CGACATGTGCATGCAAGAACC	60.730	52.381	24.58	10.34	42.39	3.62
4034	10264	1.400494	GAGAGGAGACGCTGAACTCTC	59.600	57.143	0.00	0.00	44.87	3.20
4206	10436	4.709886	TGGACGTGATGAAGGAGAGATTTA	59.290	41.667	0.00	0.00	0.00	1.40
4207	10437	5.363868	TGGACGTGATGAAGGAGAGATTTAT	59.636	40.000	0.00	0.00	0.00	1.40
4251	10518	5.463724	TGTTGTTTAACGGATTGGAAATTGC	59.536	36.000	0.00	0.00	39.71	3.56
4314	10581	2.026915	AGGATGTGTTGCATGCACTCTA	60.027	45.455	22.58	8.15	46.68	2.43
4356	10623	3.414700	GAGGCACGTGTGGAAGCG	61.415	66.667	18.38	0.00	0.00	4.68
4357	10624	4.235762	AGGCACGTGTGGAAGCGT	62.236	61.111	18.38	0.00	42.45	5.07
4552	10821	3.110178	CGCCGTCCGAGGACAAAC	61.110	66.667	20.75	9.07	44.77	2.93
4567	10836	2.731976	GACAAACGCGAAGACAAGAGAT	59.268	45.455	15.93	0.00	0.00	2.75
4598	10867	2.808202	GCAGTGTATCGGCCATTGATCT	60.808	50.000	2.24	0.00	0.00	2.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	0.992970	TAGGCATCCATGGGGCTTCA	60.993	55.000	19.72	3.17	40.69	3.02
46	47	0.958382	GGGTGGACGCAACATGCTTA	60.958	55.000	0.00	0.00	42.25	3.09
74	76	0.984230	TCTGAATCCCTGTGTGTCCC	59.016	55.000	0.00	0.00	0.00	4.46
89	91	1.374125	CCATGCGACGGTGTTCTGA	60.374	57.895	0.00	0.00	0.00	3.27
107	109	3.982241	GTGCTTGCTGGTGGGTGC	61.982	66.667	0.00	0.00	0.00	5.01
132	134	1.305549	CAAGGCAAGGGAATGGGCT	60.306	57.895	0.00	0.00	39.32	5.19
172	174	1.753078	CCTCCGACCGGATCTGTCA	60.753	63.158	9.46	0.00	44.24	3.58
184	186	3.430497	CCCTCTCCCTCCCTCCGA	61.430	72.222	0.00	0.00	0.00	4.55
239	241	3.695022	CTCTACCCGTGCGAACCGG	62.695	68.421	0.00	0.00	45.07	5.28
241	243	1.153881	GACTCTACCCGTGCGAACC	60.154	63.158	0.00	0.00	0.00	3.62
245	247	3.439129	TCATATATGACTCTACCCGTGCG	59.561	47.826	11.49	0.00	0.00	5.34
425	427	2.699846	TCCTTGCCTTGCTGATGTTTTT	59.300	40.909	0.00	0.00	0.00	1.94
718	728	0.947244	CAAGAAACAACAGCGAGGCT	59.053	50.000	0.00	0.00	40.77	4.58
816	826	1.566703	TCACCCAGGAACAAGGACAAA	59.433	47.619	0.00	0.00	0.00	2.83
911	921	2.528127	TGGCTTCCCGGAGACCAA	60.528	61.111	0.73	0.00	0.00	3.67
1211	1221	5.634439	CGAAATGAATCAATCAAAACTGGCA	59.366	36.000	0.00	0.00	42.54	4.92
1663	1675	5.689514	GTCGACATGATCTGTGGATAGAAAG	59.310	44.000	11.55	0.00	43.36	2.62
1666	1678	4.207165	TGTCGACATGATCTGTGGATAGA	58.793	43.478	15.76	0.00	43.36	1.98
1799	1821	2.613977	CCATAGATGAATGCGGGAGGTC	60.614	54.545	0.00	0.00	0.00	3.85
1889	1917	4.978186	TCCTGTAGTTGATTCGAGTTACG	58.022	43.478	0.00	0.00	44.09	3.18
1905	1933	8.108999	TCATCCTTTCTGATTGAATTTCCTGTA	58.891	33.333	0.00	0.00	34.24	2.74
1987	2029	3.473625	AGGTTTTTAGTTCACTGGACGG	58.526	45.455	0.00	0.00	0.00	4.79
2016	2066	6.252869	GTCACCGTGTGAAGTATGTTATAGTG	59.747	42.308	8.09	0.00	44.49	2.74
2018	2068	5.747197	GGTCACCGTGTGAAGTATGTTATAG	59.253	44.000	8.09	0.00	44.49	1.31
2019	2069	5.419788	AGGTCACCGTGTGAAGTATGTTATA	59.580	40.000	8.09	0.00	44.49	0.98
2023	2079	1.968493	AGGTCACCGTGTGAAGTATGT	59.032	47.619	8.09	0.00	44.49	2.29
2029	2085	1.067142	GCTATGAGGTCACCGTGTGAA	60.067	52.381	8.09	0.00	44.49	3.18
2031	2087	0.460284	GGCTATGAGGTCACCGTGTG	60.460	60.000	0.00	0.00	34.45	3.82
2032	2088	0.902984	TGGCTATGAGGTCACCGTGT	60.903	55.000	0.00	0.00	0.00	4.49
2065	2121	2.771762	ATGGAGGAGGAGCAGCCC	60.772	66.667	0.00	0.00	37.37	5.19
2086	2145	3.834447	CTGACGACGACGGGCAACA	62.834	63.158	12.58	3.29	44.46	3.33
2098	2159	0.873054	GACAACGACTCCTCTGACGA	59.127	55.000	0.00	0.00	0.00	4.20
2287	3596	2.328289	CGAGATCGTCGTCGCCAT	59.672	61.111	0.00	0.00	44.20	4.40
2329	3641	4.530857	CGACGGGGAGATGGCCAC	62.531	72.222	8.16	1.58	0.00	5.01
2447	3759	4.143333	AACTCCGACATCCCGCCG	62.143	66.667	0.00	0.00	0.00	6.46
2448	3760	2.202892	GAACTCCGACATCCCGCC	60.203	66.667	0.00	0.00	0.00	6.13
2449	3761	2.582498	CGAACTCCGACATCCCGC	60.582	66.667	0.00	0.00	41.76	6.13
2489	3801	1.334869	CCATTGCCGATCCTAGTTTGC	59.665	52.381	0.00	0.00	0.00	3.68
2490	3802	2.614057	GACCATTGCCGATCCTAGTTTG	59.386	50.000	0.00	0.00	0.00	2.93
2491	3803	2.741878	CGACCATTGCCGATCCTAGTTT	60.742	50.000	0.00	0.00	0.00	2.66
2492	3804	1.202533	CGACCATTGCCGATCCTAGTT	60.203	52.381	0.00	0.00	0.00	2.24
2494	3806	0.389391	ACGACCATTGCCGATCCTAG	59.611	55.000	0.00	0.00	0.00	3.02
2495	3807	1.694844	TACGACCATTGCCGATCCTA	58.305	50.000	0.00	0.00	0.00	2.94
2496	3808	0.828022	TTACGACCATTGCCGATCCT	59.172	50.000	0.00	0.00	0.00	3.24
2497	3809	1.531149	CATTACGACCATTGCCGATCC	59.469	52.381	0.00	0.00	0.00	3.36
2498	3810	1.069906	GCATTACGACCATTGCCGATC	60.070	52.381	0.00	0.00	0.00	3.69
2499	3811	0.944386	GCATTACGACCATTGCCGAT	59.056	50.000	0.00	0.00	0.00	4.18
2501	3813	0.662619	ATGCATTACGACCATTGCCG	59.337	50.000	0.00	0.00	34.20	5.69
2502	3814	1.675483	TCATGCATTACGACCATTGCC	59.325	47.619	0.00	0.00	34.20	4.52
2503	3815	3.108144	GTTCATGCATTACGACCATTGC	58.892	45.455	0.00	0.00	35.67	3.56
2613	8828	1.794785	CTTGTCGTCGTCGCGCTTA	60.795	57.895	5.56	0.00	36.96	3.09
2976	9191	2.286523	CCAGGAGGACTTGGCGTCT	61.287	63.158	0.00	0.00	42.44	4.18
3159	9374	1.010462	CCATCACATGCATGACGCG	60.010	57.895	32.75	16.88	46.97	6.01
3659	9874	2.675844	CCCGTTGTTGCTTTGATCGATA	59.324	45.455	0.00	0.00	0.00	2.92
3733	9948	5.278604	CAATGTCGATCTCCAATACGTACA	58.721	41.667	0.00	0.00	0.00	2.90
3815	10033	3.914426	ATTGCTCAATCCGGTCTACTT	57.086	42.857	0.00	0.00	0.00	2.24
3828	10057	1.757118	CCCGTCCTCTAGAATTGCTCA	59.243	52.381	0.00	0.00	0.00	4.26
3934	10163	1.799258	AACCCGAGCAAAGCAAGCAG	61.799	55.000	0.00	0.00	0.00	4.24
4206	10436	7.013655	ACAACAGATTTGAAGCAGTAGTTTCAT	59.986	33.333	0.00	0.00	43.17	2.57
4207	10437	6.318648	ACAACAGATTTGAAGCAGTAGTTTCA	59.681	34.615	0.00	0.00	42.22	2.69
4251	10518	1.000060	CCAAGTTTGGCATGAGGTGTG	60.000	52.381	0.00	0.00	42.21	3.82
4276	10543	1.088340	CCTCACTGGCTGCTCATTCG	61.088	60.000	0.00	0.00	0.00	3.34
4314	10581	2.854253	TCCTTTGTGACCAGGAGCT	58.146	52.632	0.00	0.00	33.99	4.09
4356	10623	0.100146	CCGACCGACTAACTAGGCAC	59.900	60.000	0.00	0.00	0.00	5.01
4357	10624	1.660560	GCCGACCGACTAACTAGGCA	61.661	60.000	0.00	0.00	42.37	4.75
4391	10660	1.139853	GACCAACTCATGCCCTCCTAG	59.860	57.143	0.00	0.00	0.00	3.02
4500	10769	2.143122	CGGTTGATAATGGATCCGTGG	58.857	52.381	7.39	0.00	33.07	4.94
4552	10821	2.280183	GCTTGTATCTCTTGTCTTCGCG	59.720	50.000	0.00	0.00	0.00	5.87
4598	10867	3.855255	TCTGTTCTGGTTTGATCACCA	57.145	42.857	5.05	5.05	45.13	4.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.