AutoCloner

Multiple sequence alignment - TraesCS6D01G182000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G182000	chr6D	100.000	2441	0	0	1	2441	210720793	210723233	0.000000e+00	4508.0
1	TraesCS6D01G182000	chr5D	95.656	2279	82	9	180	2441	483803382	483805660	0.000000e+00	3644.0
2	TraesCS6D01G182000	chr5D	96.084	1813	64	5	636	2441	6232320	6234132	0.000000e+00	2948.0
3	TraesCS6D01G182000	chr5D	92.797	472	22	5	182	642	6219798	6220268	0.000000e+00	673.0
4	TraesCS6D01G182000	chr5D	96.923	130	4	0	3	132	6255679	6255550	4.090000e-53	219.0
5	TraesCS6D01G182000	chr5D	97.638	127	3	0	3	129	481592549	481592675	4.090000e-53	219.0
6	TraesCS6D01G182000	chr1D	95.136	2282	88	13	180	2441	254481372	254479094	0.000000e+00	3578.0
7	TraesCS6D01G182000	chr1D	95.251	1516	65	6	932	2441	180352115	180353629	0.000000e+00	2394.0
8	TraesCS6D01G182000	chr1D	91.771	960	67	6	180	1130	244362013	244361057	0.000000e+00	1325.0
9	TraesCS6D01G182000	chr1D	97.638	127	3	0	3	129	254454223	254454349	4.090000e-53	219.0
10	TraesCS6D01G182000	chr1D	97.638	127	3	0	3	129	254457023	254457149	4.090000e-53	219.0
11	TraesCS6D01G182000	chr3B	94.998	2279	96	10	180	2441	201497396	201495119	0.000000e+00	3561.0
12	TraesCS6D01G182000	chr7A	91.615	2278	172	12	180	2441	352292421	352294695	0.000000e+00	3131.0
13	TraesCS6D01G182000	chr7A	92.199	141	5	1	558	692	591409818	591409678	6.890000e-46	195.0
14	TraesCS6D01G182000	chr7A	92.199	141	5	1	558	692	591462447	591462307	6.890000e-46	195.0
15	TraesCS6D01G182000	chr2B	94.308	2038	91	10	180	2200	474939245	474937216	0.000000e+00	3097.0
16	TraesCS6D01G182000	chr2D	95.506	1936	71	8	180	2100	643857735	643855801	0.000000e+00	3079.0
17	TraesCS6D01G182000	chr2D	95.372	1707	64	7	180	1871	359630500	359632206	0.000000e+00	2700.0
18	TraesCS6D01G182000	chr2D	94.253	1044	47	5	180	1210	628292115	628293158	0.000000e+00	1583.0
19	TraesCS6D01G182000	chrUn	96.640	1369	40	5	1045	2408	407032912	407031545	0.000000e+00	2268.0
20	TraesCS6D01G182000	chrUn	96.923	130	4	0	3	132	385510155	385510026	4.090000e-53	219.0
21	TraesCS6D01G182000	chrUn	97.638	127	3	0	3	129	433905588	433905714	4.090000e-53	219.0
22	TraesCS6D01G182000	chrUn	96.923	130	4	0	3	132	453035454	453035325	4.090000e-53	219.0
23	TraesCS6D01G182000	chr3D	93.708	1335	72	5	181	1506	451862866	451864197	0.000000e+00	1989.0
24	TraesCS6D01G182000	chr5A	96.364	165	6	0	696	860	137031452	137031288	3.090000e-69	272.0
25	TraesCS6D01G182000	chr5A	98.246	57	0	1	992	1047	18167815	18167871	5.550000e-17	99.0
26	TraesCS6D01G182000	chr4B	96.923	130	4	0	3	132	507429609	507429480	4.090000e-53	219.0
27	TraesCS6D01G182000	chr1A	97.638	127	3	0	3	129	554479844	554479970	4.090000e-53	219.0
28	TraesCS6D01G182000	chr3A	97.561	82	1	1	720	800	471027788	471027707	3.270000e-29	139.0
29	TraesCS6D01G182000	chr2A	100.000	60	0	0	2382	2441	771306881	771306940	7.130000e-21	111.0
30	TraesCS6D01G182000	chr2A	100.000	53	0	0	2389	2441	452717035	452717087	5.550000e-17	99.0
31	TraesCS6D01G182000	chr2A	89.286	56	4	1	945	998	686257522	686257467	4.360000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G182000	chr6D	210720793	210723233	2440	False	4508	4508	100.000	1	2441	1	chr6D.!!$F1	2440
1	TraesCS6D01G182000	chr5D	483803382	483805660	2278	False	3644	3644	95.656	180	2441	1	chr5D.!!$F4	2261
2	TraesCS6D01G182000	chr5D	6232320	6234132	1812	False	2948	2948	96.084	636	2441	1	chr5D.!!$F2	1805
3	TraesCS6D01G182000	chr1D	254479094	254481372	2278	True	3578	3578	95.136	180	2441	1	chr1D.!!$R2	2261
4	TraesCS6D01G182000	chr1D	180352115	180353629	1514	False	2394	2394	95.251	932	2441	1	chr1D.!!$F1	1509
5	TraesCS6D01G182000	chr1D	244361057	244362013	956	True	1325	1325	91.771	180	1130	1	chr1D.!!$R1	950
6	TraesCS6D01G182000	chr1D	254454223	254457149	2926	False	219	219	97.638	3	129	2	chr1D.!!$F2	126
7	TraesCS6D01G182000	chr3B	201495119	201497396	2277	True	3561	3561	94.998	180	2441	1	chr3B.!!$R1	2261
8	TraesCS6D01G182000	chr7A	352292421	352294695	2274	False	3131	3131	91.615	180	2441	1	chr7A.!!$F1	2261
9	TraesCS6D01G182000	chr2B	474937216	474939245	2029	True	3097	3097	94.308	180	2200	1	chr2B.!!$R1	2020
10	TraesCS6D01G182000	chr2D	643855801	643857735	1934	True	3079	3079	95.506	180	2100	1	chr2D.!!$R1	1920
11	TraesCS6D01G182000	chr2D	359630500	359632206	1706	False	2700	2700	95.372	180	1871	1	chr2D.!!$F1	1691
12	TraesCS6D01G182000	chr2D	628292115	628293158	1043	False	1583	1583	94.253	180	1210	1	chr2D.!!$F2	1030
13	TraesCS6D01G182000	chrUn	407031545	407032912	1367	True	2268	2268	96.640	1045	2408	1	chrUn.!!$R2	1363
14	TraesCS6D01G182000	chr3D	451862866	451864197	1331	False	1989	1989	93.708	181	1506	1	chr3D.!!$F1	1325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
551	1425	0.249120	TGCTACGGACAGGTTGATGG	59.751	55.000	0.00	0.0	0.00	3.51	F
784	1697	1.001406	GCTCCTTATCGACATGGAGGG	59.999	57.143	22.89	4.5	44.46	4.30	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1406	3064	0.249073	CCAACGATCCGAGGCTGTAG	60.249	60.000	0.0	0.0	0.0	2.74	R
2325	4237	2.271800	CTTTCATACAGCGGGAGTCAC	58.728	52.381	0.0	0.0	0.0	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	5.121811	AGCAACAGATTTAGTAGCATCAGG	58.878	41.667	0.00	0.00	0.00	3.86
55	56	1.173913	GGTGCAATAAGGGCTCGTTT	58.826	50.000	0.00	0.00	0.00	3.60
98	99	4.751098	TGGTTCAGTGGTATGTTAACGAAC	59.249	41.667	0.26	5.79	36.00	3.95
129	130	8.697067	CGATTACGAAAACTAGACTTTCTCAAA	58.303	33.333	15.35	9.64	42.66	2.69
133	134	8.664211	ACGAAAACTAGACTTTCTCAAATTCT	57.336	30.769	15.35	0.00	35.07	2.40
134	135	9.110502	ACGAAAACTAGACTTTCTCAAATTCTT	57.889	29.630	15.35	0.00	33.22	2.52
141	142	9.695884	CTAGACTTTCTCAAATTCTTAATTCGC	57.304	33.333	0.00	0.00	33.22	4.70
142	143	8.099364	AGACTTTCTCAAATTCTTAATTCGCA	57.901	30.769	0.00	0.00	27.21	5.10
144	145	8.507470	ACTTTCTCAAATTCTTAATTCGCAAC	57.493	30.769	0.00	0.00	0.00	4.17
145	146	8.352942	ACTTTCTCAAATTCTTAATTCGCAACT	58.647	29.630	0.00	0.00	0.00	3.16
148	149	9.988350	TTCTCAAATTCTTAATTCGCAACTATC	57.012	29.630	0.00	0.00	0.00	2.08
150	151	9.214953	CTCAAATTCTTAATTCGCAACTATCAC	57.785	33.333	0.00	0.00	0.00	3.06
152	153	8.788813	CAAATTCTTAATTCGCAACTATCACAC	58.211	33.333	0.00	0.00	0.00	3.82
153	154	5.696260	TCTTAATTCGCAACTATCACACG	57.304	39.130	0.00	0.00	0.00	4.49
154	155	4.565166	TCTTAATTCGCAACTATCACACGG	59.435	41.667	0.00	0.00	0.00	4.94
155	156	2.380084	ATTCGCAACTATCACACGGT	57.620	45.000	0.00	0.00	0.00	4.83
156	157	1.705256	TTCGCAACTATCACACGGTC	58.295	50.000	0.00	0.00	0.00	4.79
157	158	0.599060	TCGCAACTATCACACGGTCA	59.401	50.000	0.00	0.00	0.00	4.02
158	159	1.000052	TCGCAACTATCACACGGTCAA	60.000	47.619	0.00	0.00	0.00	3.18
159	160	1.999735	CGCAACTATCACACGGTCAAT	59.000	47.619	0.00	0.00	0.00	2.57
161	673	3.615056	CGCAACTATCACACGGTCAATAA	59.385	43.478	0.00	0.00	0.00	1.40
165	677	6.687105	GCAACTATCACACGGTCAATAAATTC	59.313	38.462	0.00	0.00	0.00	2.17
166	678	7.414098	GCAACTATCACACGGTCAATAAATTCT	60.414	37.037	0.00	0.00	0.00	2.40
169	681	9.661563	ACTATCACACGGTCAATAAATTCTTAA	57.338	29.630	0.00	0.00	0.00	1.85
318	1192	5.357314	TGAGAACCAATCCTACTACTTCTCG	59.643	44.000	0.00	0.00	36.49	4.04
322	1196	4.208746	CCAATCCTACTACTTCTCGTCCT	58.791	47.826	0.00	0.00	0.00	3.85
337	1211	1.003812	CGTCCTGGGGTTTCCACAATA	59.996	52.381	0.00	0.00	41.46	1.90
389	1263	1.796017	TATTGGACCCGTGCTGGATA	58.204	50.000	0.00	0.00	42.00	2.59
402	1276	2.852449	TGCTGGATATCACTTTTCCCCT	59.148	45.455	4.83	0.00	0.00	4.79
448	1322	2.735762	CGCTTTGGTAGTCCAGAGTAGC	60.736	54.545	5.02	5.02	44.69	3.58
455	1329	2.783609	AGTCCAGAGTAGCGACACTA	57.216	50.000	0.00	0.00	0.00	2.74
483	1357	7.750458	CGATAAGCAAATTAATGTGACTTGTGT	59.250	33.333	18.14	9.33	0.00	3.72
542	1416	2.139323	ACCTATGAGTGCTACGGACA	57.861	50.000	0.00	0.00	0.00	4.02
551	1425	0.249120	TGCTACGGACAGGTTGATGG	59.751	55.000	0.00	0.00	0.00	3.51
588	1462	1.939769	GACACGGGAGCTCCTCTCAC	61.940	65.000	31.36	13.98	43.70	3.51
595	1469	1.261480	GAGCTCCTCTCACTGTTCCA	58.739	55.000	0.87	0.00	41.51	3.53
673	1553	4.401519	GGTCCTGTAGATAGTAGTGCAACA	59.598	45.833	0.00	0.00	41.43	3.33
684	1564	4.442706	AGTAGTGCAACATTCCCTATTCG	58.557	43.478	0.00	0.00	41.43	3.34
694	1574	4.835615	ACATTCCCTATTCGTAGATCTGCT	59.164	41.667	5.18	0.00	35.04	4.24
717	1630	6.516860	GCTCCTGCCTTTATCGAGTTAGATAA	60.517	42.308	0.00	0.00	40.24	1.75
784	1697	1.001406	GCTCCTTATCGACATGGAGGG	59.999	57.143	22.89	4.50	44.46	4.30
805	1730	3.895656	GGAAAATAGGACTATTTGGGGGC	59.104	47.826	15.77	5.99	42.91	5.80
810	1736	1.037579	GGACTATTTGGGGGCACTGC	61.038	60.000	0.00	0.00	0.00	4.40
883	1809	3.512496	TCATGGGGGCGTATCTGTATTA	58.488	45.455	0.00	0.00	0.00	0.98
1055	1983	4.290196	TGGTTTAACTGCCCTAACTATGGT	59.710	41.667	0.00	0.00	0.00	3.55
1271	2787	7.849804	ACTTCGATTCAAGCAGTTTATGTAT	57.150	32.000	0.00	0.00	0.00	2.29
1274	2790	9.249457	CTTCGATTCAAGCAGTTTATGTATCTA	57.751	33.333	0.00	0.00	0.00	1.98
1406	3064	5.463724	CCTTTAGATTCAACCTCGACTATGC	59.536	44.000	0.00	0.00	0.00	3.14
1444	3351	4.167554	TGGCAACGAACATTATGAAACC	57.832	40.909	0.00	0.00	42.51	3.27
1460	3367	0.237498	AACCGCGCAAAGAGTTAAGC	59.763	50.000	8.75	0.00	0.00	3.09
1491	3398	9.810545	TTTACAATGTTAAAAAGAACTTCAGGG	57.189	29.630	0.00	0.00	0.00	4.45
1501	3408	1.261619	GAACTTCAGGGCATTATCGCG	59.738	52.381	0.00	0.00	0.00	5.87
1508	3415	3.006430	TCAGGGCATTATCGCGATTCTTA	59.994	43.478	28.81	5.97	0.00	2.10
1577	3484	6.638468	AGCAAGAAAAATTGAGCGTTTCTTAG	59.362	34.615	12.28	9.30	45.33	2.18
1585	3492	1.871039	GAGCGTTTCTTAGCACAACCA	59.129	47.619	0.00	0.00	35.48	3.67
1731	3640	2.569853	TGGTGGGTAACATCGATGAAGT	59.430	45.455	31.33	17.35	39.74	3.01
1733	3642	3.374058	GGTGGGTAACATCGATGAAGTTG	59.626	47.826	31.33	6.12	39.74	3.16
1751	3660	2.745281	GTTGGCACGAAAGCTATAACCA	59.255	45.455	0.00	0.00	34.17	3.67
1781	3690	4.946157	AGGAGAACAAATCGCAGAAATGAT	59.054	37.500	0.00	0.00	43.58	2.45
1898	3808	1.190643	CAAACCACGCCCCCATTAAT	58.809	50.000	0.00	0.00	0.00	1.40
1956	3866	3.566322	CCTCAACGACCAATGGTTAACAA	59.434	43.478	6.30	0.00	35.25	2.83
1978	3888	1.021968	GTTCTGTGGAGCGGTTTTGT	58.978	50.000	0.00	0.00	0.00	2.83
2037	3947	3.118629	TGATGCAGAACTGGGTAGTGATC	60.119	47.826	3.99	0.00	37.19	2.92
2045	3955	3.041946	ACTGGGTAGTGATCTTGATCCC	58.958	50.000	7.99	3.36	35.34	3.85
2046	3956	3.041211	CTGGGTAGTGATCTTGATCCCA	58.959	50.000	7.99	12.80	40.70	4.37
2095	4006	2.930682	CCGAAGCTAACTTGAGTAAGCC	59.069	50.000	0.00	0.00	37.43	4.35
2128	4040	4.104383	AGATTTGGTTGAAGGAAGCTCA	57.896	40.909	0.00	0.00	32.90	4.26
2134	4046	2.333014	GTTGAAGGAAGCTCACTCTCG	58.667	52.381	0.00	0.00	0.00	4.04
2145	4057	0.249676	TCACTCTCGGACGAGCTAGT	59.750	55.000	16.33	12.54	41.71	2.57
2325	4237	8.047310	ACTTACCTACTATTGGATTTGAACCAG	58.953	37.037	0.00	0.00	38.70	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	2.227865	TGAAAACGAGCCCTTATTGCAC	59.772	45.455	0.00	0.00	0.00	4.57
98	99	5.638783	AGTCTAGTTTTCGTAATCGACCAG	58.361	41.667	0.00	0.00	46.03	4.00
129	130	6.238103	CCGTGTGATAGTTGCGAATTAAGAAT	60.238	38.462	0.00	0.00	0.00	2.40
132	133	4.328983	ACCGTGTGATAGTTGCGAATTAAG	59.671	41.667	0.00	0.00	0.00	1.85
133	134	4.247258	ACCGTGTGATAGTTGCGAATTAA	58.753	39.130	0.00	0.00	0.00	1.40
134	135	3.852286	ACCGTGTGATAGTTGCGAATTA	58.148	40.909	0.00	0.00	0.00	1.40
135	136	2.671396	GACCGTGTGATAGTTGCGAATT	59.329	45.455	0.00	0.00	0.00	2.17
137	138	1.000052	TGACCGTGTGATAGTTGCGAA	60.000	47.619	0.00	0.00	0.00	4.70
139	140	1.424403	TTGACCGTGTGATAGTTGCG	58.576	50.000	0.00	0.00	0.00	4.85
140	141	5.539582	TTTATTGACCGTGTGATAGTTGC	57.460	39.130	0.00	0.00	0.00	4.17
141	142	7.974675	AGAATTTATTGACCGTGTGATAGTTG	58.025	34.615	0.00	0.00	0.00	3.16
142	143	8.561738	AAGAATTTATTGACCGTGTGATAGTT	57.438	30.769	0.00	0.00	0.00	2.24
147	148	9.004717	TGAATTAAGAATTTATTGACCGTGTGA	57.995	29.630	0.00	0.00	0.00	3.58
148	149	9.619316	TTGAATTAAGAATTTATTGACCGTGTG	57.381	29.630	0.00	0.00	0.00	3.82
322	1196	4.733077	TTCTTCTATTGTGGAAACCCCA	57.267	40.909	0.00	0.00	44.25	4.96
359	1233	3.875134	ACGGGTCCAATAATTTGATCGAC	59.125	43.478	0.00	0.00	34.60	4.20
389	1263	2.649816	ACTTGCCTAGGGGAAAAGTGAT	59.350	45.455	11.72	0.00	38.64	3.06
448	1322	6.578020	TTAATTTGCTTATCGGTAGTGTCG	57.422	37.500	0.00	0.00	0.00	4.35
455	1329	7.094377	ACAAGTCACATTAATTTGCTTATCGGT	60.094	33.333	9.46	3.95	0.00	4.69
519	1393	3.379372	GTCCGTAGCACTCATAGGTACAA	59.621	47.826	0.00	0.00	39.30	2.41
524	1398	1.338337	CCTGTCCGTAGCACTCATAGG	59.662	57.143	0.00	0.00	0.00	2.57
542	1416	1.985622	TCCATTCCTCCCATCAACCT	58.014	50.000	0.00	0.00	0.00	3.50
551	1425	3.691609	GTGTCAATCACTTCCATTCCTCC	59.308	47.826	0.00	0.00	43.13	4.30
595	1469	0.745128	CGAGAGTAGCTCCACCGACT	60.745	60.000	0.00	0.00	40.70	4.18
673	1553	4.464597	GGAGCAGATCTACGAATAGGGAAT	59.535	45.833	0.00	0.00	0.00	3.01
684	1564	2.998316	AAAGGCAGGAGCAGATCTAC	57.002	50.000	0.00	0.00	44.61	2.59
694	1574	6.776116	TCTTATCTAACTCGATAAAGGCAGGA	59.224	38.462	0.00	0.00	35.94	3.86
717	1630	8.655935	ACCTGTTTCAAAGATGGATAATTTCT	57.344	30.769	0.00	0.00	0.00	2.52
784	1697	4.341235	GTGCCCCCAAATAGTCCTATTTTC	59.659	45.833	9.10	0.26	42.11	2.29
805	1730	5.405571	CAGTACTGTTTTACCTACTGCAGTG	59.594	44.000	29.57	15.97	37.68	3.66
810	1736	7.492669	CCATGATCAGTACTGTTTTACCTACTG	59.507	40.741	21.99	7.55	38.20	2.74
843	1769	6.406177	CCCATGAGCTTTAGCAATGTTATTGT	60.406	38.462	4.33	0.00	45.16	2.71
883	1809	1.305887	CCGTTCCCCTACTCCACCT	60.306	63.158	0.00	0.00	0.00	4.00
1271	2787	2.163010	GGTCGGTCAAATCGTCTGTAGA	59.837	50.000	0.00	0.00	0.00	2.59
1274	2790	0.037605	GGGTCGGTCAAATCGTCTGT	60.038	55.000	0.00	0.00	0.00	3.41
1406	3064	0.249073	CCAACGATCCGAGGCTGTAG	60.249	60.000	0.00	0.00	0.00	2.74
1444	3351	1.708680	GTTTGCTTAACTCTTTGCGCG	59.291	47.619	0.00	0.00	33.79	6.86
1477	3384	4.142381	GCGATAATGCCCTGAAGTTCTTTT	60.142	41.667	4.17	0.00	0.00	2.27
1491	3398	4.389645	CAAGCTAAGAATCGCGATAATGC	58.610	43.478	24.00	20.29	0.00	3.56
1501	3408	9.499479	TCTGATAATTCATCCAAGCTAAGAATC	57.501	33.333	0.00	0.00	32.09	2.52
1508	3415	6.100859	TCCTCTTCTGATAATTCATCCAAGCT	59.899	38.462	0.00	0.00	32.09	3.74
1585	3492	6.980397	CAGTAAAAACTTCTGCCACAAAGAAT	59.020	34.615	0.00	0.00	33.34	2.40
1731	3640	3.060736	TGGTTATAGCTTTCGTGCCAA	57.939	42.857	0.00	0.00	0.00	4.52
1733	3642	4.628074	TCTATGGTTATAGCTTTCGTGCC	58.372	43.478	0.00	0.00	36.92	5.01
1751	3660	5.127845	TCTGCGATTTGTTCTCCTCTTCTAT	59.872	40.000	0.00	0.00	0.00	1.98
1898	3808	4.471078	AGGACCCATATCTACTGCTGTA	57.529	45.455	3.25	3.25	0.00	2.74
1956	3866	2.319890	AAACCGCTCCACAGAACCGT	62.320	55.000	0.00	0.00	0.00	4.83
2037	3947	5.458041	TTTTGAGCTTCTTTGGGATCAAG	57.542	39.130	0.00	0.00	38.70	3.02
2045	3955	3.722728	AGTGCCTTTTGAGCTTCTTTG	57.277	42.857	0.00	0.00	0.00	2.77
2046	3956	3.701040	TCAAGTGCCTTTTGAGCTTCTTT	59.299	39.130	0.00	0.00	31.35	2.52
2095	4006	2.968675	ACCAAATCTTTCGTACCCTCG	58.031	47.619	0.00	0.00	0.00	4.63
2128	4040	2.914695	ATACTAGCTCGTCCGAGAGT	57.085	50.000	20.07	16.25	44.53	3.24
2134	4046	3.677121	TCGATTCGTATACTAGCTCGTCC	59.323	47.826	5.89	0.00	0.00	4.79
2145	4057	4.848562	ATTGACAGCCTCGATTCGTATA	57.151	40.909	5.89	0.00	0.00	1.47
2325	4237	2.271800	CTTTCATACAGCGGGAGTCAC	58.728	52.381	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.