Multiple sequence alignment - TraesCS6D01G181900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G181900 chr6D 100.000 2690 0 0 1 2690 210720086 210722775 0 4968
1 TraesCS6D01G181900 chr2D 95.545 1818 66 7 887 2690 643857735 643855919 0 2894
2 TraesCS6D01G181900 chr2D 95.372 1707 64 7 887 2578 359630500 359632206 0 2700
3 TraesCS6D01G181900 chr2D 94.253 1044 47 5 887 1917 628292115 628293158 0 1583
4 TraesCS6D01G181900 chr5D 95.437 1819 68 7 887 2690 483803382 483805200 0 2885
5 TraesCS6D01G181900 chr5D 96.083 1353 48 3 1343 2690 6232320 6233672 0 2200
6 TraesCS6D01G181900 chr5D 95.352 839 35 4 4 839 329129008 329128171 0 1330
7 TraesCS6D01G181900 chr5D 92.797 472 22 5 889 1349 6219798 6220268 0 673
8 TraesCS6D01G181900 chr1D 94.786 1822 74 11 887 2690 254481372 254479554 0 2819
9 TraesCS6D01G181900 chr1D 94.792 1056 51 3 1639 2690 180352115 180353170 0 1642
10 TraesCS6D01G181900 chr1D 91.771 960 67 6 887 1837 244362013 244361057 0 1325
11 TraesCS6D01G181900 chr1D 94.041 839 45 4 4 839 51835074 51834238 0 1267
12 TraesCS6D01G181900 chr2B 94.722 1819 81 7 887 2690 474939245 474937427 0 2813
13 TraesCS6D01G181900 chr3B 94.667 1819 81 8 887 2690 201497396 201495579 0 2808
14 TraesCS6D01G181900 chr7A 91.474 1818 139 9 887 2690 352292421 352294236 0 2484
15 TraesCS6D01G181900 chr3D 93.708 1335 72 5 888 2213 451862866 451864197 0 1989
16 TraesCS6D01G181900 chr3A 96.552 841 24 3 4 839 105560085 105559245 0 1387
17 TraesCS6D01G181900 chr7B 96.071 840 29 3 1 836 137683289 137684128 0 1365
18 TraesCS6D01G181900 chr1A 95.976 845 25 3 1 836 554479126 554479970 0 1363
19 TraesCS6D01G181900 chrUn 95.952 840 30 4 1 836 388893985 388894824 0 1360
20 TraesCS6D01G181900 chr1B 95.585 838 32 5 1 836 633713855 633714689 0 1338
21 TraesCS6D01G181900 chr4A 95.215 836 36 3 8 839 309449509 309448674 0 1319
22 TraesCS6D01G181900 chr6B 94.787 844 36 5 4 839 18741396 18740553 0 1308


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G181900 chr6D 210720086 210722775 2689 False 4968 4968 100.000 1 2690 1 chr6D.!!$F1 2689
1 TraesCS6D01G181900 chr2D 643855919 643857735 1816 True 2894 2894 95.545 887 2690 1 chr2D.!!$R1 1803
2 TraesCS6D01G181900 chr2D 359630500 359632206 1706 False 2700 2700 95.372 887 2578 1 chr2D.!!$F1 1691
3 TraesCS6D01G181900 chr2D 628292115 628293158 1043 False 1583 1583 94.253 887 1917 1 chr2D.!!$F2 1030
4 TraesCS6D01G181900 chr5D 483803382 483805200 1818 False 2885 2885 95.437 887 2690 1 chr5D.!!$F3 1803
5 TraesCS6D01G181900 chr5D 6232320 6233672 1352 False 2200 2200 96.083 1343 2690 1 chr5D.!!$F2 1347
6 TraesCS6D01G181900 chr5D 329128171 329129008 837 True 1330 1330 95.352 4 839 1 chr5D.!!$R1 835
7 TraesCS6D01G181900 chr1D 254479554 254481372 1818 True 2819 2819 94.786 887 2690 1 chr1D.!!$R3 1803
8 TraesCS6D01G181900 chr1D 180352115 180353170 1055 False 1642 1642 94.792 1639 2690 1 chr1D.!!$F1 1051
9 TraesCS6D01G181900 chr1D 244361057 244362013 956 True 1325 1325 91.771 887 1837 1 chr1D.!!$R2 950
10 TraesCS6D01G181900 chr1D 51834238 51835074 836 True 1267 1267 94.041 4 839 1 chr1D.!!$R1 835
11 TraesCS6D01G181900 chr2B 474937427 474939245 1818 True 2813 2813 94.722 887 2690 1 chr2B.!!$R1 1803
12 TraesCS6D01G181900 chr3B 201495579 201497396 1817 True 2808 2808 94.667 887 2690 1 chr3B.!!$R1 1803
13 TraesCS6D01G181900 chr7A 352292421 352294236 1815 False 2484 2484 91.474 887 2690 1 chr7A.!!$F1 1803
14 TraesCS6D01G181900 chr3D 451862866 451864197 1331 False 1989 1989 93.708 888 2213 1 chr3D.!!$F1 1325
15 TraesCS6D01G181900 chr3A 105559245 105560085 840 True 1387 1387 96.552 4 839 1 chr3A.!!$R1 835
16 TraesCS6D01G181900 chr7B 137683289 137684128 839 False 1365 1365 96.071 1 836 1 chr7B.!!$F1 835
17 TraesCS6D01G181900 chr1A 554479126 554479970 844 False 1363 1363 95.976 1 836 1 chr1A.!!$F1 835
18 TraesCS6D01G181900 chrUn 388893985 388894824 839 False 1360 1360 95.952 1 836 1 chrUn.!!$F1 835
19 TraesCS6D01G181900 chr1B 633713855 633714689 834 False 1338 1338 95.585 1 836 1 chr1B.!!$F1 835
20 TraesCS6D01G181900 chr4A 309448674 309449509 835 True 1319 1319 95.215 8 839 1 chr4A.!!$R1 831
21 TraesCS6D01G181900 chr6B 18740553 18741396 843 True 1308 1308 94.787 4 839 1 chr6B.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 886 0.59906 TCGCAACTATCACACGGTCA 59.401 50.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2028 0.037605 GGGTCGGTCAAATCGTCTGT 60.038 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 186 4.599041 TGAGACATAAGAACCCCCATTTG 58.401 43.478 0.00 0.00 0.00 2.32
254 270 8.880750 AGACTTTTGAACTTAGAACACTAACAC 58.119 33.333 0.00 0.00 0.00 3.32
256 272 5.646467 TTGAACTTAGAACACTAACACGC 57.354 39.130 0.00 0.00 0.00 5.34
272 288 8.424731 CACTAACACGCCAAATTTTAGATTTTC 58.575 33.333 0.00 0.00 0.00 2.29
635 657 9.411801 CTCATATTATAAAGCTTGCTAGAACGA 57.588 33.333 0.00 0.00 0.00 3.85
708 730 7.494298 TCAGGGAAAAAGTTTCTTAATTGTTGC 59.506 33.333 1.11 0.00 0.00 4.17
744 766 5.121811 AGCAACAGATTTAGTAGCATCAGG 58.878 41.667 0.00 0.00 0.00 3.86
762 784 1.173913 GGTGCAATAAGGGCTCGTTT 58.826 50.000 0.00 0.00 0.00 3.60
805 827 4.751098 TGGTTCAGTGGTATGTTAACGAAC 59.249 41.667 0.26 5.79 36.00 3.95
836 858 8.697067 CGATTACGAAAACTAGACTTTCTCAAA 58.303 33.333 15.35 9.64 42.66 2.69
840 862 8.664211 ACGAAAACTAGACTTTCTCAAATTCT 57.336 30.769 15.35 0.00 35.07 2.40
841 863 9.110502 ACGAAAACTAGACTTTCTCAAATTCTT 57.889 29.630 15.35 0.00 33.22 2.52
848 870 9.695884 CTAGACTTTCTCAAATTCTTAATTCGC 57.304 33.333 0.00 0.00 33.22 4.70
849 871 8.099364 AGACTTTCTCAAATTCTTAATTCGCA 57.901 30.769 0.00 0.00 27.21 5.10
850 872 8.567948 AGACTTTCTCAAATTCTTAATTCGCAA 58.432 29.630 0.00 0.00 27.21 4.85
851 873 8.507470 ACTTTCTCAAATTCTTAATTCGCAAC 57.493 30.769 0.00 0.00 0.00 4.17
852 874 8.352942 ACTTTCTCAAATTCTTAATTCGCAACT 58.647 29.630 0.00 0.00 0.00 3.16
853 875 9.825972 CTTTCTCAAATTCTTAATTCGCAACTA 57.174 29.630 0.00 0.00 0.00 2.24
855 877 9.988350 TTCTCAAATTCTTAATTCGCAACTATC 57.012 29.630 0.00 0.00 0.00 2.08
856 878 9.161629 TCTCAAATTCTTAATTCGCAACTATCA 57.838 29.630 0.00 0.00 0.00 2.15
857 879 9.214953 CTCAAATTCTTAATTCGCAACTATCAC 57.785 33.333 0.00 0.00 0.00 3.06
858 880 8.726068 TCAAATTCTTAATTCGCAACTATCACA 58.274 29.630 0.00 0.00 0.00 3.58
859 881 8.788813 CAAATTCTTAATTCGCAACTATCACAC 58.211 33.333 0.00 0.00 0.00 3.82
860 882 5.696260 TCTTAATTCGCAACTATCACACG 57.304 39.130 0.00 0.00 0.00 4.49
861 883 4.565166 TCTTAATTCGCAACTATCACACGG 59.435 41.667 0.00 0.00 0.00 4.94
862 884 2.380084 ATTCGCAACTATCACACGGT 57.620 45.000 0.00 0.00 0.00 4.83
863 885 1.705256 TTCGCAACTATCACACGGTC 58.295 50.000 0.00 0.00 0.00 4.79
864 886 0.599060 TCGCAACTATCACACGGTCA 59.401 50.000 0.00 0.00 0.00 4.02
865 887 1.000052 TCGCAACTATCACACGGTCAA 60.000 47.619 0.00 0.00 0.00 3.18
866 888 1.999735 CGCAACTATCACACGGTCAAT 59.000 47.619 0.00 0.00 0.00 2.57
867 889 3.119424 TCGCAACTATCACACGGTCAATA 60.119 43.478 0.00 0.00 0.00 1.90
868 890 3.615056 CGCAACTATCACACGGTCAATAA 59.385 43.478 0.00 0.00 0.00 1.40
869 891 4.092237 CGCAACTATCACACGGTCAATAAA 59.908 41.667 0.00 0.00 0.00 1.40
870 892 5.220586 CGCAACTATCACACGGTCAATAAAT 60.221 40.000 0.00 0.00 0.00 1.40
871 893 6.551736 GCAACTATCACACGGTCAATAAATT 58.448 36.000 0.00 0.00 0.00 1.82
872 894 6.687105 GCAACTATCACACGGTCAATAAATTC 59.313 38.462 0.00 0.00 0.00 2.17
873 895 7.414098 GCAACTATCACACGGTCAATAAATTCT 60.414 37.037 0.00 0.00 0.00 2.40
874 896 8.450964 CAACTATCACACGGTCAATAAATTCTT 58.549 33.333 0.00 0.00 0.00 2.52
875 897 9.661563 AACTATCACACGGTCAATAAATTCTTA 57.338 29.630 0.00 0.00 0.00 2.10
876 898 9.661563 ACTATCACACGGTCAATAAATTCTTAA 57.338 29.630 0.00 0.00 0.00 1.85
880 902 9.004717 TCACACGGTCAATAAATTCTTAATTCA 57.995 29.630 0.00 0.00 0.00 2.57
881 903 9.619316 CACACGGTCAATAAATTCTTAATTCAA 57.381 29.630 0.00 0.00 0.00 2.69
1025 1055 5.357314 TGAGAACCAATCCTACTACTTCTCG 59.643 44.000 0.00 0.00 36.49 4.04
1029 1059 4.208746 CCAATCCTACTACTTCTCGTCCT 58.791 47.826 0.00 0.00 0.00 3.85
1044 1074 1.003812 CGTCCTGGGGTTTCCACAATA 59.996 52.381 0.00 0.00 41.46 1.90
1096 1126 1.796017 TATTGGACCCGTGCTGGATA 58.204 50.000 0.00 0.00 42.00 2.59
1109 1140 2.852449 TGCTGGATATCACTTTTCCCCT 59.148 45.455 4.83 0.00 0.00 4.79
1155 1186 2.735762 CGCTTTGGTAGTCCAGAGTAGC 60.736 54.545 5.02 5.02 44.69 3.58
1162 1193 2.783609 AGTCCAGAGTAGCGACACTA 57.216 50.000 0.00 0.00 0.00 2.74
1190 1221 7.750458 CGATAAGCAAATTAATGTGACTTGTGT 59.250 33.333 18.14 9.33 0.00 3.72
1249 1280 2.139323 ACCTATGAGTGCTACGGACA 57.861 50.000 0.00 0.00 0.00 4.02
1258 1289 0.249120 TGCTACGGACAGGTTGATGG 59.751 55.000 0.00 0.00 0.00 3.51
1295 1326 1.939769 GACACGGGAGCTCCTCTCAC 61.940 65.000 31.36 13.98 43.70 3.51
1302 1333 1.261480 GAGCTCCTCTCACTGTTCCA 58.739 55.000 0.87 0.00 41.51 3.53
1380 1417 4.401519 GGTCCTGTAGATAGTAGTGCAACA 59.598 45.833 0.00 0.00 41.43 3.33
1391 1428 4.442706 AGTAGTGCAACATTCCCTATTCG 58.557 43.478 0.00 0.00 41.43 3.34
1401 1438 4.835615 ACATTCCCTATTCGTAGATCTGCT 59.164 41.667 5.18 0.00 35.04 4.24
1424 1461 6.516860 GCTCCTGCCTTTATCGAGTTAGATAA 60.517 42.308 0.00 0.00 40.24 1.75
1491 1528 1.001406 GCTCCTTATCGACATGGAGGG 59.999 57.143 22.89 4.50 44.46 4.30
1512 1554 3.895656 GGAAAATAGGACTATTTGGGGGC 59.104 47.826 15.77 5.99 42.91 5.80
1513 1555 4.542697 GAAAATAGGACTATTTGGGGGCA 58.457 43.478 15.77 0.00 42.91 5.36
1517 1560 1.037579 GGACTATTTGGGGGCACTGC 61.038 60.000 0.00 0.00 0.00 4.40
1590 1633 3.512496 TCATGGGGGCGTATCTGTATTA 58.488 45.455 0.00 0.00 0.00 0.98
1762 1807 4.290196 TGGTTTAACTGCCCTAACTATGGT 59.710 41.667 0.00 0.00 0.00 3.55
1978 2025 7.849804 ACTTCGATTCAAGCAGTTTATGTAT 57.150 32.000 0.00 0.00 0.00 2.29
1981 2028 9.249457 CTTCGATTCAAGCAGTTTATGTATCTA 57.751 33.333 0.00 0.00 0.00 1.98
2113 2160 5.463724 CCTTTAGATTCAACCTCGACTATGC 59.536 44.000 0.00 0.00 0.00 3.14
2151 2198 4.167554 TGGCAACGAACATTATGAAACC 57.832 40.909 0.00 0.00 42.51 3.27
2167 2214 0.237498 AACCGCGCAAAGAGTTAAGC 59.763 50.000 8.75 0.00 0.00 3.09
2198 2245 9.810545 TTTACAATGTTAAAAAGAACTTCAGGG 57.189 29.630 0.00 0.00 0.00 4.45
2208 2255 1.261619 GAACTTCAGGGCATTATCGCG 59.738 52.381 0.00 0.00 0.00 5.87
2215 2262 3.006430 TCAGGGCATTATCGCGATTCTTA 59.994 43.478 28.81 5.97 0.00 2.10
2284 2331 6.638468 AGCAAGAAAAATTGAGCGTTTCTTAG 59.362 34.615 12.28 9.30 45.33 2.18
2292 2339 1.871039 GAGCGTTTCTTAGCACAACCA 59.129 47.619 0.00 0.00 35.48 3.67
2438 2487 2.569853 TGGTGGGTAACATCGATGAAGT 59.430 45.455 31.33 17.35 39.74 3.01
2440 2489 3.374058 GGTGGGTAACATCGATGAAGTTG 59.626 47.826 31.33 6.12 39.74 3.16
2458 2507 2.745281 GTTGGCACGAAAGCTATAACCA 59.255 45.455 0.00 0.00 34.17 3.67
2488 2537 4.946157 AGGAGAACAAATCGCAGAAATGAT 59.054 37.500 0.00 0.00 43.58 2.45
2605 2655 1.190643 CAAACCACGCCCCCATTAAT 58.809 50.000 0.00 0.00 0.00 1.40
2663 2713 3.566322 CCTCAACGACCAATGGTTAACAA 59.434 43.478 6.30 0.00 35.25 2.83
2685 2735 1.021968 GTTCTGTGGAGCGGTTTTGT 58.978 50.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.234896 TGTGGGGAATGATGCACAAT 57.765 45.000 0.00 0.00 29.26 2.71
353 372 7.067251 CCGAGAGAACCTTGTACTAAGATAAGT 59.933 40.741 0.00 0.00 0.00 2.24
391 410 9.657121 GAAAGATCCGAAATAGCTTGAAATAAG 57.343 33.333 0.00 0.00 0.00 1.73
563 584 1.220493 AGGGGCCATTTTAGGATTCCC 59.780 52.381 4.39 0.00 36.08 3.97
622 644 3.403276 ACGAGTCGTTCTAGCAAGC 57.597 52.632 13.56 0.00 36.35 4.01
744 766 2.227865 TGAAAACGAGCCCTTATTGCAC 59.772 45.455 0.00 0.00 0.00 4.57
805 827 5.638783 AGTCTAGTTTTCGTAATCGACCAG 58.361 41.667 0.00 0.00 46.03 4.00
836 858 6.238103 CCGTGTGATAGTTGCGAATTAAGAAT 60.238 38.462 0.00 0.00 0.00 2.40
839 861 4.328983 ACCGTGTGATAGTTGCGAATTAAG 59.671 41.667 0.00 0.00 0.00 1.85
840 862 4.247258 ACCGTGTGATAGTTGCGAATTAA 58.753 39.130 0.00 0.00 0.00 1.40
841 863 3.852286 ACCGTGTGATAGTTGCGAATTA 58.148 40.909 0.00 0.00 0.00 1.40
842 864 2.671396 GACCGTGTGATAGTTGCGAATT 59.329 45.455 0.00 0.00 0.00 2.17
843 865 2.268298 GACCGTGTGATAGTTGCGAAT 58.732 47.619 0.00 0.00 0.00 3.34
844 866 1.000052 TGACCGTGTGATAGTTGCGAA 60.000 47.619 0.00 0.00 0.00 4.70
845 867 0.599060 TGACCGTGTGATAGTTGCGA 59.401 50.000 0.00 0.00 0.00 5.10
846 868 1.424403 TTGACCGTGTGATAGTTGCG 58.576 50.000 0.00 0.00 0.00 4.85
847 869 5.539582 TTTATTGACCGTGTGATAGTTGC 57.460 39.130 0.00 0.00 0.00 4.17
848 870 7.974675 AGAATTTATTGACCGTGTGATAGTTG 58.025 34.615 0.00 0.00 0.00 3.16
849 871 8.561738 AAGAATTTATTGACCGTGTGATAGTT 57.438 30.769 0.00 0.00 0.00 2.24
850 872 9.661563 TTAAGAATTTATTGACCGTGTGATAGT 57.338 29.630 0.00 0.00 0.00 2.12
854 876 9.004717 TGAATTAAGAATTTATTGACCGTGTGA 57.995 29.630 0.00 0.00 0.00 3.58
855 877 9.619316 TTGAATTAAGAATTTATTGACCGTGTG 57.381 29.630 0.00 0.00 0.00 3.82
1029 1059 4.733077 TTCTTCTATTGTGGAAACCCCA 57.267 40.909 0.00 0.00 44.25 4.96
1066 1096 3.875134 ACGGGTCCAATAATTTGATCGAC 59.125 43.478 0.00 0.00 34.60 4.20
1096 1126 2.649816 ACTTGCCTAGGGGAAAAGTGAT 59.350 45.455 11.72 0.00 38.64 3.06
1155 1186 6.578020 TTAATTTGCTTATCGGTAGTGTCG 57.422 37.500 0.00 0.00 0.00 4.35
1162 1193 7.094377 ACAAGTCACATTAATTTGCTTATCGGT 60.094 33.333 9.46 3.95 0.00 4.69
1226 1257 3.379372 GTCCGTAGCACTCATAGGTACAA 59.621 47.826 0.00 0.00 39.30 2.41
1231 1262 1.338337 CCTGTCCGTAGCACTCATAGG 59.662 57.143 0.00 0.00 0.00 2.57
1249 1280 1.985622 TCCATTCCTCCCATCAACCT 58.014 50.000 0.00 0.00 0.00 3.50
1258 1289 3.691609 GTGTCAATCACTTCCATTCCTCC 59.308 47.826 0.00 0.00 43.13 4.30
1302 1333 0.745128 CGAGAGTAGCTCCACCGACT 60.745 60.000 0.00 0.00 40.70 4.18
1380 1417 4.464597 GGAGCAGATCTACGAATAGGGAAT 59.535 45.833 0.00 0.00 0.00 3.01
1391 1428 2.998316 AAAGGCAGGAGCAGATCTAC 57.002 50.000 0.00 0.00 44.61 2.59
1401 1438 6.776116 TCTTATCTAACTCGATAAAGGCAGGA 59.224 38.462 0.00 0.00 35.94 3.86
1424 1461 8.655935 ACCTGTTTCAAAGATGGATAATTTCT 57.344 30.769 0.00 0.00 0.00 2.52
1491 1528 4.341235 GTGCCCCCAAATAGTCCTATTTTC 59.659 45.833 9.10 0.26 42.11 2.29
1512 1554 5.405571 CAGTACTGTTTTACCTACTGCAGTG 59.594 44.000 29.57 15.97 37.68 3.66
1513 1555 5.303589 TCAGTACTGTTTTACCTACTGCAGT 59.696 40.000 25.12 25.12 37.21 4.40
1517 1560 7.492669 CCATGATCAGTACTGTTTTACCTACTG 59.507 40.741 21.99 7.55 38.20 2.74
1550 1593 6.406177 CCCATGAGCTTTAGCAATGTTATTGT 60.406 38.462 4.33 0.00 45.16 2.71
1590 1633 1.305887 CCGTTCCCCTACTCCACCT 60.306 63.158 0.00 0.00 0.00 4.00
1978 2025 2.163010 GGTCGGTCAAATCGTCTGTAGA 59.837 50.000 0.00 0.00 0.00 2.59
1981 2028 0.037605 GGGTCGGTCAAATCGTCTGT 60.038 55.000 0.00 0.00 0.00 3.41
2113 2160 0.249073 CCAACGATCCGAGGCTGTAG 60.249 60.000 0.00 0.00 0.00 2.74
2151 2198 1.708680 GTTTGCTTAACTCTTTGCGCG 59.291 47.619 0.00 0.00 33.79 6.86
2184 2231 4.142381 GCGATAATGCCCTGAAGTTCTTTT 60.142 41.667 4.17 0.00 0.00 2.27
2198 2245 4.389645 CAAGCTAAGAATCGCGATAATGC 58.610 43.478 24.00 20.29 0.00 3.56
2208 2255 9.499479 TCTGATAATTCATCCAAGCTAAGAATC 57.501 33.333 0.00 0.00 32.09 2.52
2215 2262 6.100859 TCCTCTTCTGATAATTCATCCAAGCT 59.899 38.462 0.00 0.00 32.09 3.74
2292 2339 6.980397 CAGTAAAAACTTCTGCCACAAAGAAT 59.020 34.615 0.00 0.00 33.34 2.40
2438 2487 3.060736 TGGTTATAGCTTTCGTGCCAA 57.939 42.857 0.00 0.00 0.00 4.52
2440 2489 4.628074 TCTATGGTTATAGCTTTCGTGCC 58.372 43.478 0.00 0.00 36.92 5.01
2458 2507 5.127845 TCTGCGATTTGTTCTCCTCTTCTAT 59.872 40.000 0.00 0.00 0.00 1.98
2605 2655 4.471078 AGGACCCATATCTACTGCTGTA 57.529 45.455 3.25 3.25 0.00 2.74
2663 2713 2.319890 AAACCGCTCCACAGAACCGT 62.320 55.000 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.