Multiple sequence alignment - TraesCS6D01G181600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G181600 chr6D 100.000 3955 0 0 1 3955 207082761 207078807 0.000000e+00 7304.0
1 TraesCS6D01G181600 chr6D 85.561 187 24 3 3763 3947 207271935 207272120 4.030000e-45 193.0
2 TraesCS6D01G181600 chr6D 82.812 192 24 8 3768 3955 400290216 400290030 3.160000e-36 163.0
3 TraesCS6D01G181600 chrUn 98.021 1162 19 3 2109 3269 74364674 74365832 0.000000e+00 2015.0
4 TraesCS6D01G181600 chrUn 94.463 1210 19 5 784 1960 74363240 74364434 0.000000e+00 1820.0
5 TraesCS6D01G181600 chrUn 94.991 1138 22 4 778 1882 78587061 78588196 0.000000e+00 1753.0
6 TraesCS6D01G181600 chrUn 92.402 1224 24 22 1893 3113 78588261 78589418 0.000000e+00 1681.0
7 TraesCS6D01G181600 chrUn 89.710 690 36 14 3268 3955 74365990 74366646 0.000000e+00 848.0
8 TraesCS6D01G181600 chrUn 92.285 337 25 1 3620 3955 78589663 78589999 9.940000e-131 477.0
9 TraesCS6D01G181600 chrUn 92.347 196 10 2 3157 3351 78589415 78589606 1.400000e-69 274.0
10 TraesCS6D01G181600 chrUn 92.899 169 3 3 1958 2126 74364503 74364662 1.840000e-58 237.0
11 TraesCS6D01G181600 chr2D 81.009 753 97 25 5 729 369374166 369374900 1.240000e-154 556.0
12 TraesCS6D01G181600 chr6A 82.119 453 51 9 354 777 13082479 13082930 1.040000e-95 361.0
13 TraesCS6D01G181600 chr5A 85.632 174 19 5 3768 3938 194435040 194434870 1.130000e-40 178.0
14 TraesCS6D01G181600 chr3D 83.854 192 24 6 3768 3955 313585109 313584921 4.060000e-40 176.0
15 TraesCS6D01G181600 chr3D 82.812 192 25 7 3768 3955 209080924 209081111 8.790000e-37 165.0
16 TraesCS6D01G181600 chr1A 83.854 192 23 7 3768 3955 167365939 167365752 4.060000e-40 176.0
17 TraesCS6D01G181600 chr1D 82.741 197 23 10 3764 3955 99291427 99291237 8.790000e-37 165.0
18 TraesCS6D01G181600 chr1D 78.750 240 27 14 6 226 478694172 478694406 5.330000e-29 139.0
19 TraesCS6D01G181600 chr1D 83.108 148 23 2 6 152 338527743 338527597 2.480000e-27 134.0
20 TraesCS6D01G181600 chr1D 83.673 147 18 5 69 210 453704948 453704803 2.480000e-27 134.0
21 TraesCS6D01G181600 chr1D 83.099 142 22 2 12 152 348810512 348810372 1.150000e-25 128.0
22 TraesCS6D01G181600 chr1D 81.081 148 26 2 6 152 453704888 453704742 2.500000e-22 117.0
23 TraesCS6D01G181600 chr4D 84.247 146 19 3 69 210 46727349 46727494 5.330000e-29 139.0
24 TraesCS6D01G181600 chr4D 83.108 148 23 2 6 152 46727409 46727555 2.480000e-27 134.0
25 TraesCS6D01G181600 chr4D 78.767 146 18 9 16 150 32248696 32248553 7.040000e-13 86.1
26 TraesCS6D01G181600 chr2B 82.759 116 18 2 3361 3475 15096829 15096715 6.990000e-18 102.0
27 TraesCS6D01G181600 chr4A 82.883 111 19 0 69 179 47658802 47658912 2.510000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G181600 chr6D 207078807 207082761 3954 True 7304.00 7304 100.00000 1 3955 1 chr6D.!!$R1 3954
1 TraesCS6D01G181600 chrUn 74363240 74366646 3406 False 1230.00 2015 93.77325 784 3955 4 chrUn.!!$F1 3171
2 TraesCS6D01G181600 chrUn 78587061 78589999 2938 False 1046.25 1753 93.00625 778 3955 4 chrUn.!!$F2 3177
3 TraesCS6D01G181600 chr2D 369374166 369374900 734 False 556.00 556 81.00900 5 729 1 chr2D.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.025898 CGACAGTCATTGCATCGCAG 59.974 55.000 0.41 0.0 40.61 5.18 F
955 965 0.040942 CCATTTCCACCCACCATCCA 59.959 55.000 0.00 0.0 0.00 3.41 F
1370 1405 1.274447 GCTTACGAGGTAGTTGGGTGT 59.726 52.381 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2044 0.175760 TCAGGCTACATCGCACCTTC 59.824 55.000 0.0 0.0 0.0 3.46 R
2717 2987 2.691771 GCTGCTCTCCTCGTCGTCA 61.692 63.158 0.0 0.0 0.0 4.35 R
3020 3299 0.535335 TTCGGTAGTCCATGACAGCC 59.465 55.000 0.0 0.0 34.6 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.506108 GCAATGTCGATGCCTGCT 58.494 55.556 0.00 0.00 37.85 4.24
18 19 1.063649 GCAATGTCGATGCCTGCTG 59.936 57.895 0.00 0.00 37.85 4.41
19 20 1.063649 CAATGTCGATGCCTGCTGC 59.936 57.895 0.00 0.00 41.77 5.25
28 29 3.437795 GCCTGCTGCATCGCAACT 61.438 61.111 14.74 0.00 39.80 3.16
29 30 2.789917 CCTGCTGCATCGCAACTC 59.210 61.111 1.31 0.00 39.80 3.01
30 31 2.758089 CCTGCTGCATCGCAACTCC 61.758 63.158 1.31 0.00 39.80 3.85
31 32 3.092192 CTGCTGCATCGCAACTCCG 62.092 63.158 1.31 0.00 39.80 4.63
32 33 3.869272 GCTGCATCGCAACTCCGG 61.869 66.667 0.00 0.00 38.41 5.14
33 34 3.869272 CTGCATCGCAACTCCGGC 61.869 66.667 0.00 0.00 38.41 6.13
54 55 4.166011 GTTGACGCCCGCTGCATC 62.166 66.667 0.00 0.00 41.33 3.91
82 83 4.101790 CACCCGGTGCATCGCAAC 62.102 66.667 15.51 0.00 43.63 4.17
83 84 4.329545 ACCCGGTGCATCGCAACT 62.330 61.111 15.51 0.00 45.07 3.16
84 85 3.499737 CCCGGTGCATCGCAACTC 61.500 66.667 15.51 0.00 45.07 3.01
85 86 3.499737 CCGGTGCATCGCAACTCC 61.500 66.667 15.51 0.00 45.07 3.85
86 87 3.853330 CGGTGCATCGCAACTCCG 61.853 66.667 6.36 0.00 45.07 4.63
87 88 3.499737 GGTGCATCGCAACTCCGG 61.500 66.667 0.00 0.00 43.73 5.14
88 89 4.166011 GTGCATCGCAACTCCGGC 62.166 66.667 0.00 0.00 41.47 6.13
96 97 4.812476 CAACTCCGGCGGCATCGA 62.812 66.667 23.83 1.73 39.00 3.59
97 98 4.814294 AACTCCGGCGGCATCGAC 62.814 66.667 23.83 0.00 41.93 4.20
108 109 2.893895 CATCGACAGCCGCTGCAT 60.894 61.111 20.56 7.23 41.13 3.96
109 110 2.587194 ATCGACAGCCGCTGCATC 60.587 61.111 20.56 10.35 41.13 3.91
141 142 4.465512 GTCGTGGCCGCTGCATTG 62.466 66.667 15.69 0.00 40.13 2.82
152 153 3.120385 TGCATTGCAGCTCCGACG 61.120 61.111 7.38 0.00 33.32 5.12
153 154 2.815211 GCATTGCAGCTCCGACGA 60.815 61.111 3.15 0.00 0.00 4.20
154 155 3.084579 CATTGCAGCTCCGACGAC 58.915 61.111 0.00 0.00 0.00 4.34
155 156 2.507102 ATTGCAGCTCCGACGACG 60.507 61.111 0.00 0.00 39.43 5.12
156 157 3.282745 ATTGCAGCTCCGACGACGT 62.283 57.895 0.00 0.00 37.88 4.34
157 158 3.891586 TTGCAGCTCCGACGACGTC 62.892 63.158 18.04 18.04 37.88 4.34
172 173 3.849953 GTCGACGGCCGTTGCATC 61.850 66.667 36.12 24.59 40.13 3.91
173 174 4.365505 TCGACGGCCGTTGCATCA 62.366 61.111 36.12 19.51 40.13 3.07
174 175 4.147322 CGACGGCCGTTGCATCAC 62.147 66.667 34.65 16.77 40.13 3.06
175 176 3.047280 GACGGCCGTTGCATCACA 61.047 61.111 34.65 0.00 40.13 3.58
176 177 3.027170 GACGGCCGTTGCATCACAG 62.027 63.158 34.65 0.00 40.13 3.66
177 178 4.465512 CGGCCGTTGCATCACAGC 62.466 66.667 19.50 0.00 40.13 4.40
178 179 3.058160 GGCCGTTGCATCACAGCT 61.058 61.111 0.00 0.00 40.13 4.24
179 180 2.629656 GGCCGTTGCATCACAGCTT 61.630 57.895 0.00 0.00 40.13 3.74
180 181 1.286880 GCCGTTGCATCACAGCTTT 59.713 52.632 0.00 0.00 37.47 3.51
181 182 1.005294 GCCGTTGCATCACAGCTTTG 61.005 55.000 0.00 0.00 37.47 2.77
182 183 0.387622 CCGTTGCATCACAGCTTTGG 60.388 55.000 0.00 0.00 34.99 3.28
183 184 1.005294 CGTTGCATCACAGCTTTGGC 61.005 55.000 0.00 0.00 39.06 4.52
184 185 1.005294 GTTGCATCACAGCTTTGGCG 61.005 55.000 0.00 0.00 44.37 5.69
185 186 2.144833 TTGCATCACAGCTTTGGCGG 62.145 55.000 0.00 0.00 44.37 6.13
186 187 2.180017 CATCACAGCTTTGGCGGC 59.820 61.111 0.00 0.00 44.37 6.53
187 188 3.064324 ATCACAGCTTTGGCGGCC 61.064 61.111 13.32 13.32 44.37 6.13
224 225 4.060038 GGCCGCTGCATTGCAACT 62.060 61.111 13.18 0.00 38.41 3.16
225 226 2.505557 GCCGCTGCATTGCAACTC 60.506 61.111 13.18 4.20 38.41 3.01
226 227 2.986306 GCCGCTGCATTGCAACTCT 61.986 57.895 13.18 0.00 38.41 3.24
227 228 1.154093 CCGCTGCATTGCAACTCTG 60.154 57.895 13.18 0.00 38.41 3.35
236 237 4.389576 GCAACTCTGCCGGCGTTG 62.390 66.667 30.09 30.09 43.26 4.10
237 238 3.726517 CAACTCTGCCGGCGTTGG 61.727 66.667 28.05 18.48 35.57 3.77
250 251 4.487412 GTTGGCGCCTGCTGCATC 62.487 66.667 29.70 0.72 41.33 3.91
279 280 4.479993 GGCCGGCTCATCACAGCT 62.480 66.667 28.56 0.00 39.58 4.24
280 281 2.894387 GCCGGCTCATCACAGCTC 60.894 66.667 22.15 0.00 39.58 4.09
281 282 2.202987 CCGGCTCATCACAGCTCC 60.203 66.667 0.00 0.00 39.58 4.70
282 283 2.584418 CGGCTCATCACAGCTCCG 60.584 66.667 0.00 0.00 39.58 4.63
283 284 2.895680 GGCTCATCACAGCTCCGA 59.104 61.111 0.00 0.00 39.58 4.55
284 285 1.445095 GGCTCATCACAGCTCCGAT 59.555 57.895 0.00 0.00 39.58 4.18
285 286 0.879400 GGCTCATCACAGCTCCGATG 60.879 60.000 13.51 13.51 39.58 3.84
286 287 0.879400 GCTCATCACAGCTCCGATGG 60.879 60.000 17.72 11.56 39.60 3.51
287 288 0.879400 CTCATCACAGCTCCGATGGC 60.879 60.000 17.72 0.00 39.60 4.40
288 289 2.107750 ATCACAGCTCCGATGGCG 59.892 61.111 0.00 0.00 34.52 5.69
289 290 2.725312 ATCACAGCTCCGATGGCGT 61.725 57.895 0.00 0.00 35.23 5.68
290 291 2.635229 ATCACAGCTCCGATGGCGTC 62.635 60.000 0.00 0.00 35.23 5.19
299 300 3.330853 GATGGCGTCGATGACCGC 61.331 66.667 8.31 8.93 38.37 5.68
300 301 3.774959 GATGGCGTCGATGACCGCT 62.775 63.158 16.25 5.65 38.37 5.52
301 302 4.794439 TGGCGTCGATGACCGCTG 62.794 66.667 16.25 0.00 38.37 5.18
304 305 4.498520 CGTCGATGACCGCTGCCT 62.499 66.667 0.00 0.00 38.37 4.75
305 306 2.583593 GTCGATGACCGCTGCCTC 60.584 66.667 0.00 0.00 38.37 4.70
306 307 3.068064 TCGATGACCGCTGCCTCA 61.068 61.111 0.00 0.00 38.37 3.86
307 308 2.887568 CGATGACCGCTGCCTCAC 60.888 66.667 0.00 0.00 0.00 3.51
308 309 2.265739 GATGACCGCTGCCTCACA 59.734 61.111 0.00 0.00 0.00 3.58
319 320 3.385384 CCTCACAGCTCCGGCAGA 61.385 66.667 0.00 0.00 41.70 4.26
320 321 2.183811 CTCACAGCTCCGGCAGAG 59.816 66.667 0.00 0.00 46.29 3.35
321 322 2.601666 TCACAGCTCCGGCAGAGT 60.602 61.111 0.00 0.00 45.21 3.24
322 323 2.125753 CACAGCTCCGGCAGAGTC 60.126 66.667 0.00 0.00 45.21 3.36
323 324 3.753434 ACAGCTCCGGCAGAGTCG 61.753 66.667 0.00 0.00 45.21 4.18
324 325 3.443925 CAGCTCCGGCAGAGTCGA 61.444 66.667 0.00 0.00 45.21 4.20
325 326 3.444805 AGCTCCGGCAGAGTCGAC 61.445 66.667 7.70 7.70 45.21 4.20
326 327 4.838486 GCTCCGGCAGAGTCGACG 62.838 72.222 10.46 3.63 45.21 5.12
327 328 4.838486 CTCCGGCAGAGTCGACGC 62.838 72.222 11.72 11.72 37.87 5.19
344 345 3.869272 CCCGCTGCATCGCAACTC 61.869 66.667 4.01 0.00 38.41 3.01
345 346 3.869272 CCGCTGCATCGCAACTCC 61.869 66.667 4.01 0.00 38.41 3.85
346 347 4.214383 CGCTGCATCGCAACTCCG 62.214 66.667 0.00 0.00 38.41 4.63
347 348 2.815211 GCTGCATCGCAACTCCGA 60.815 61.111 0.00 0.00 38.41 4.55
352 353 2.903357 ATCGCAACTCCGATGGCT 59.097 55.556 0.00 0.00 45.37 4.75
353 354 1.522355 ATCGCAACTCCGATGGCTG 60.522 57.895 0.00 0.00 45.37 4.85
354 355 3.869272 CGCAACTCCGATGGCTGC 61.869 66.667 0.00 0.00 0.00 5.25
355 356 2.437359 GCAACTCCGATGGCTGCT 60.437 61.111 0.00 0.00 0.00 4.24
356 357 2.758089 GCAACTCCGATGGCTGCTG 61.758 63.158 0.00 0.00 0.00 4.41
357 358 2.437359 AACTCCGATGGCTGCTGC 60.437 61.111 7.10 7.10 38.76 5.25
358 359 3.258228 AACTCCGATGGCTGCTGCA 62.258 57.895 17.89 0.88 41.91 4.41
359 360 2.203167 CTCCGATGGCTGCTGCAT 60.203 61.111 17.89 8.83 41.91 3.96
360 361 1.822613 CTCCGATGGCTGCTGCATT 60.823 57.895 17.89 3.51 41.91 3.56
361 362 2.060004 CTCCGATGGCTGCTGCATTG 62.060 60.000 17.89 11.77 41.91 2.82
362 363 2.278596 CGATGGCTGCTGCATTGC 60.279 61.111 17.89 3.74 41.91 3.56
363 364 2.889617 GATGGCTGCTGCATTGCA 59.110 55.556 17.89 11.50 41.91 4.08
372 373 3.436924 TGCATTGCAGCTCTGGCG 61.437 61.111 7.38 0.00 44.37 5.69
373 374 4.189188 GCATTGCAGCTCTGGCGG 62.189 66.667 3.15 0.00 44.37 6.13
382 383 4.193334 CTCTGGCGGCGTCGATGA 62.193 66.667 16.53 6.42 39.00 2.92
383 384 4.492160 TCTGGCGGCGTCGATGAC 62.492 66.667 16.53 4.06 39.00 3.06
389 390 4.796231 GGCGTCGATGACCGCTGT 62.796 66.667 16.25 0.00 38.37 4.40
390 391 3.248171 GCGTCGATGACCGCTGTC 61.248 66.667 9.31 0.64 42.12 3.51
391 392 2.485582 CGTCGATGACCGCTGTCT 59.514 61.111 9.79 0.00 42.28 3.41
392 393 1.583967 CGTCGATGACCGCTGTCTC 60.584 63.158 9.79 4.19 42.28 3.36
393 394 1.506718 GTCGATGACCGCTGTCTCA 59.493 57.895 9.79 0.00 42.28 3.27
394 395 0.798771 GTCGATGACCGCTGTCTCAC 60.799 60.000 9.79 0.82 42.28 3.51
395 396 1.212751 CGATGACCGCTGTCTCACA 59.787 57.895 9.79 0.00 42.28 3.58
403 404 2.125753 CTGTCTCACAGCTCCGGC 60.126 66.667 0.00 0.00 39.62 6.13
404 405 2.917227 TGTCTCACAGCTCCGGCA 60.917 61.111 0.00 0.00 41.70 5.69
405 406 2.343758 GTCTCACAGCTCCGGCAA 59.656 61.111 0.00 0.00 41.70 4.52
406 407 1.301716 GTCTCACAGCTCCGGCAAA 60.302 57.895 0.00 0.00 41.70 3.68
407 408 1.004560 TCTCACAGCTCCGGCAAAG 60.005 57.895 0.00 0.00 41.70 2.77
408 409 1.302033 CTCACAGCTCCGGCAAAGT 60.302 57.895 0.00 0.00 41.70 2.66
409 410 1.294659 CTCACAGCTCCGGCAAAGTC 61.295 60.000 0.00 0.00 41.70 3.01
410 411 2.357517 ACAGCTCCGGCAAAGTCG 60.358 61.111 0.00 0.00 41.70 4.18
411 412 2.048222 CAGCTCCGGCAAAGTCGA 60.048 61.111 0.00 0.00 41.70 4.20
412 413 2.048127 AGCTCCGGCAAAGTCGAC 60.048 61.111 7.70 7.70 41.70 4.20
413 414 2.357034 GCTCCGGCAAAGTCGACA 60.357 61.111 19.50 0.00 38.54 4.35
414 415 2.668280 GCTCCGGCAAAGTCGACAC 61.668 63.158 19.50 3.81 38.54 3.67
415 416 2.027625 CTCCGGCAAAGTCGACACC 61.028 63.158 19.50 12.16 29.41 4.16
416 417 3.047877 CCGGCAAAGTCGACACCC 61.048 66.667 19.50 10.65 29.41 4.61
417 418 3.411351 CGGCAAAGTCGACACCCG 61.411 66.667 19.50 18.18 40.25 5.28
418 419 3.723348 GGCAAAGTCGACACCCGC 61.723 66.667 19.50 13.88 38.37 6.13
419 420 2.665185 GCAAAGTCGACACCCGCT 60.665 61.111 19.50 0.00 38.37 5.52
420 421 2.954753 GCAAAGTCGACACCCGCTG 61.955 63.158 19.50 6.29 38.37 5.18
421 422 2.665185 AAAGTCGACACCCGCTGC 60.665 61.111 19.50 0.00 38.37 5.25
422 423 3.454587 AAAGTCGACACCCGCTGCA 62.455 57.895 19.50 0.00 38.37 4.41
423 424 2.731691 AAAGTCGACACCCGCTGCAT 62.732 55.000 19.50 0.00 38.37 3.96
424 425 3.188786 GTCGACACCCGCTGCATC 61.189 66.667 11.55 0.00 38.37 3.91
425 426 4.794439 TCGACACCCGCTGCATCG 62.794 66.667 2.26 2.26 38.37 3.84
429 430 4.465512 CACCCGCTGCATCGCAAC 62.466 66.667 4.01 0.00 38.41 4.17
430 431 4.704833 ACCCGCTGCATCGCAACT 62.705 61.111 4.01 0.00 38.41 3.16
431 432 3.869272 CCCGCTGCATCGCAACTC 61.869 66.667 4.01 0.00 38.41 3.01
432 433 3.869272 CCGCTGCATCGCAACTCC 61.869 66.667 4.01 0.00 38.41 3.85
433 434 4.214383 CGCTGCATCGCAACTCCG 62.214 66.667 0.00 0.00 38.41 4.63
434 435 2.815211 GCTGCATCGCAACTCCGA 60.815 61.111 0.00 0.00 38.41 4.55
439 440 2.203070 ATCGCAACTCCGATGGCC 60.203 61.111 0.00 0.00 45.37 5.36
440 441 4.812476 TCGCAACTCCGATGGCCG 62.812 66.667 0.00 0.00 38.18 6.13
443 444 3.197790 CAACTCCGATGGCCGCTG 61.198 66.667 0.00 0.00 36.84 5.18
446 447 4.923942 CTCCGATGGCCGCTGCAT 62.924 66.667 1.55 0.00 40.13 3.96
447 448 4.916293 TCCGATGGCCGCTGCATC 62.916 66.667 1.55 2.83 40.13 3.91
479 480 3.166630 GTCGTCGACGCTCACTGC 61.167 66.667 32.19 11.95 39.60 4.40
480 481 3.656045 TCGTCGACGCTCACTGCA 61.656 61.111 32.19 10.45 43.06 4.41
481 482 2.504899 CGTCGACGCTCACTGCAT 60.505 61.111 26.59 0.00 43.06 3.96
482 483 2.500442 CGTCGACGCTCACTGCATC 61.500 63.158 26.59 0.00 43.06 3.91
483 484 1.444383 GTCGACGCTCACTGCATCA 60.444 57.895 0.00 0.00 43.06 3.07
484 485 1.153958 TCGACGCTCACTGCATCAG 60.154 57.895 0.00 0.00 43.06 2.90
485 486 1.153958 CGACGCTCACTGCATCAGA 60.154 57.895 0.29 0.00 43.06 3.27
486 487 0.733909 CGACGCTCACTGCATCAGAA 60.734 55.000 0.29 0.00 43.06 3.02
487 488 0.718343 GACGCTCACTGCATCAGAAC 59.282 55.000 0.29 0.00 43.06 3.01
488 489 0.319728 ACGCTCACTGCATCAGAACT 59.680 50.000 0.29 0.00 43.06 3.01
489 490 0.997932 CGCTCACTGCATCAGAACTC 59.002 55.000 0.29 0.00 43.06 3.01
490 491 1.670967 CGCTCACTGCATCAGAACTCA 60.671 52.381 0.29 0.00 43.06 3.41
491 492 2.001159 GCTCACTGCATCAGAACTCAG 58.999 52.381 0.29 0.00 42.31 3.35
492 493 2.353505 GCTCACTGCATCAGAACTCAGA 60.354 50.000 0.29 0.00 42.31 3.27
493 494 3.252400 CTCACTGCATCAGAACTCAGAC 58.748 50.000 0.29 0.00 35.18 3.51
494 495 1.991264 CACTGCATCAGAACTCAGACG 59.009 52.381 0.29 0.00 35.18 4.18
495 496 0.997932 CTGCATCAGAACTCAGACGC 59.002 55.000 0.00 0.00 32.44 5.19
496 497 0.390340 TGCATCAGAACTCAGACGCC 60.390 55.000 0.00 0.00 0.00 5.68
497 498 1.086634 GCATCAGAACTCAGACGCCC 61.087 60.000 0.00 0.00 0.00 6.13
498 499 0.803768 CATCAGAACTCAGACGCCCG 60.804 60.000 0.00 0.00 0.00 6.13
499 500 2.564553 ATCAGAACTCAGACGCCCGC 62.565 60.000 0.00 0.00 0.00 6.13
500 501 2.992114 AGAACTCAGACGCCCGCT 60.992 61.111 0.00 0.00 0.00 5.52
501 502 2.811317 GAACTCAGACGCCCGCTG 60.811 66.667 5.99 5.99 34.71 5.18
504 505 4.827087 CTCAGACGCCCGCTGCAT 62.827 66.667 0.00 0.00 41.33 3.96
527 528 4.873129 CTCCGGCGGTGTCGATGG 62.873 72.222 27.32 0.00 39.00 3.51
533 534 3.487202 CGGTGTCGATGGCCGTTG 61.487 66.667 5.76 5.76 40.53 4.10
534 535 3.799755 GGTGTCGATGGCCGTTGC 61.800 66.667 7.41 3.68 39.75 4.17
535 536 3.047280 GTGTCGATGGCCGTTGCA 61.047 61.111 7.41 6.30 40.13 4.08
536 537 2.046411 TGTCGATGGCCGTTGCAT 60.046 55.556 7.41 0.00 40.13 3.96
537 538 2.106074 TGTCGATGGCCGTTGCATC 61.106 57.895 7.41 0.00 40.13 3.91
538 539 2.889988 TCGATGGCCGTTGCATCG 60.890 61.111 14.52 14.52 43.51 3.84
539 540 4.596180 CGATGGCCGTTGCATCGC 62.596 66.667 11.68 7.26 39.64 4.58
540 541 3.507924 GATGGCCGTTGCATCGCA 61.508 61.111 11.68 5.86 40.13 5.10
541 542 3.459378 GATGGCCGTTGCATCGCAG 62.459 63.158 11.68 0.61 40.61 5.18
544 545 4.527157 GCCGTTGCATCGCAGCTC 62.527 66.667 11.68 0.00 40.61 4.09
545 546 3.869272 CCGTTGCATCGCAGCTCC 61.869 66.667 11.68 0.00 40.61 4.70
546 547 4.214383 CGTTGCATCGCAGCTCCG 62.214 66.667 3.94 0.00 40.61 4.63
547 548 2.815211 GTTGCATCGCAGCTCCGA 60.815 61.111 0.27 0.27 40.61 4.55
548 549 2.815211 TTGCATCGCAGCTCCGAC 60.815 61.111 0.00 0.00 40.61 4.79
549 550 3.588057 TTGCATCGCAGCTCCGACA 62.588 57.895 0.00 0.00 40.61 4.35
550 551 3.260483 GCATCGCAGCTCCGACAG 61.260 66.667 0.00 0.00 40.40 3.51
551 552 2.182791 CATCGCAGCTCCGACAGT 59.817 61.111 0.00 0.00 40.40 3.55
552 553 1.875813 CATCGCAGCTCCGACAGTC 60.876 63.158 0.00 0.00 40.40 3.51
553 554 2.343426 ATCGCAGCTCCGACAGTCA 61.343 57.895 0.00 0.00 40.40 3.41
554 555 1.670949 ATCGCAGCTCCGACAGTCAT 61.671 55.000 0.00 0.00 40.40 3.06
555 556 1.446792 CGCAGCTCCGACAGTCATT 60.447 57.895 0.00 0.00 0.00 2.57
556 557 1.690283 CGCAGCTCCGACAGTCATTG 61.690 60.000 0.00 0.00 0.00 2.82
557 558 1.975363 GCAGCTCCGACAGTCATTGC 61.975 60.000 0.41 1.14 0.00 3.56
558 559 0.671472 CAGCTCCGACAGTCATTGCA 60.671 55.000 0.41 0.00 0.00 4.08
559 560 0.251354 AGCTCCGACAGTCATTGCAT 59.749 50.000 0.41 0.00 0.00 3.96
560 561 0.654683 GCTCCGACAGTCATTGCATC 59.345 55.000 0.41 0.00 0.00 3.91
561 562 0.926155 CTCCGACAGTCATTGCATCG 59.074 55.000 0.41 0.00 0.00 3.84
562 563 1.083806 TCCGACAGTCATTGCATCGC 61.084 55.000 0.41 0.00 0.00 4.58
563 564 1.360931 CCGACAGTCATTGCATCGCA 61.361 55.000 0.41 0.00 36.47 5.10
564 565 0.025898 CGACAGTCATTGCATCGCAG 59.974 55.000 0.41 0.00 40.61 5.18
565 566 0.247974 GACAGTCATTGCATCGCAGC 60.248 55.000 0.00 0.00 40.61 5.25
566 567 0.675837 ACAGTCATTGCATCGCAGCT 60.676 50.000 0.00 0.00 40.61 4.24
567 568 0.450583 CAGTCATTGCATCGCAGCTT 59.549 50.000 0.00 0.00 40.61 3.74
568 569 0.731417 AGTCATTGCATCGCAGCTTC 59.269 50.000 0.00 0.00 40.61 3.86
569 570 0.588233 GTCATTGCATCGCAGCTTCG 60.588 55.000 0.00 0.00 40.61 3.79
570 571 1.298116 CATTGCATCGCAGCTTCGG 60.298 57.895 5.80 0.00 40.61 4.30
571 572 1.746615 ATTGCATCGCAGCTTCGGT 60.747 52.632 5.80 0.00 40.61 4.69
572 573 1.985447 ATTGCATCGCAGCTTCGGTG 61.985 55.000 14.98 14.98 42.98 4.94
573 574 3.869272 GCATCGCAGCTTCGGTGG 61.869 66.667 20.37 4.68 40.64 4.61
574 575 2.434884 CATCGCAGCTTCGGTGGT 60.435 61.111 11.42 0.00 36.96 4.16
575 576 2.434884 ATCGCAGCTTCGGTGGTG 60.435 61.111 5.80 3.97 38.35 4.17
576 577 3.240134 ATCGCAGCTTCGGTGGTGT 62.240 57.895 5.80 0.00 37.70 4.16
577 578 3.414700 CGCAGCTTCGGTGGTGTC 61.415 66.667 0.00 2.58 37.70 3.67
578 579 3.050275 GCAGCTTCGGTGGTGTCC 61.050 66.667 8.89 0.00 37.70 4.02
579 580 2.358737 CAGCTTCGGTGGTGTCCC 60.359 66.667 0.00 0.00 0.00 4.46
580 581 2.847234 AGCTTCGGTGGTGTCCCA 60.847 61.111 0.00 0.00 38.87 4.37
581 582 2.112297 GCTTCGGTGGTGTCCCAA 59.888 61.111 0.00 0.00 44.15 4.12
582 583 2.258726 GCTTCGGTGGTGTCCCAAC 61.259 63.158 0.00 0.00 45.72 3.77
583 584 1.599797 CTTCGGTGGTGTCCCAACC 60.600 63.158 0.00 0.00 46.55 3.77
584 585 3.463728 TTCGGTGGTGTCCCAACCG 62.464 63.158 7.13 7.13 46.55 4.44
585 586 4.244463 CGGTGGTGTCCCAACCGT 62.244 66.667 5.34 0.00 46.55 4.83
586 587 2.193786 GGTGGTGTCCCAACCGTT 59.806 61.111 0.00 0.00 43.19 4.44
587 588 2.190841 GGTGGTGTCCCAACCGTTG 61.191 63.158 4.12 4.12 43.19 4.10
588 589 1.452470 GTGGTGTCCCAACCGTTGT 60.452 57.895 10.34 0.00 44.15 3.32
589 590 1.153127 TGGTGTCCCAACCGTTGTC 60.153 57.895 10.34 1.81 43.73 3.18
590 591 2.248835 GGTGTCCCAACCGTTGTCG 61.249 63.158 10.34 0.43 0.00 4.35
591 592 2.589442 TGTCCCAACCGTTGTCGC 60.589 61.111 10.34 0.81 35.54 5.19
592 593 3.351416 GTCCCAACCGTTGTCGCC 61.351 66.667 10.34 0.00 35.54 5.54
593 594 4.973055 TCCCAACCGTTGTCGCCG 62.973 66.667 10.34 0.00 35.54 6.46
594 595 4.973055 CCCAACCGTTGTCGCCGA 62.973 66.667 10.34 0.00 35.54 5.54
595 596 3.411351 CCAACCGTTGTCGCCGAG 61.411 66.667 10.34 0.00 35.54 4.63
596 597 4.072088 CAACCGTTGTCGCCGAGC 62.072 66.667 2.87 0.00 35.54 5.03
597 598 4.295119 AACCGTTGTCGCCGAGCT 62.295 61.111 0.00 0.00 35.54 4.09
601 602 2.260434 GTTGTCGCCGAGCTGGTA 59.740 61.111 0.00 0.00 41.21 3.25
602 603 1.805945 GTTGTCGCCGAGCTGGTAG 60.806 63.158 0.00 0.00 41.21 3.18
603 604 2.273179 TTGTCGCCGAGCTGGTAGT 61.273 57.895 0.00 0.00 41.21 2.73
604 605 1.812686 TTGTCGCCGAGCTGGTAGTT 61.813 55.000 0.00 0.00 41.21 2.24
605 606 1.805945 GTCGCCGAGCTGGTAGTTG 60.806 63.158 0.00 0.00 41.21 3.16
606 607 2.261671 CGCCGAGCTGGTAGTTGT 59.738 61.111 0.00 0.00 41.21 3.32
607 608 2.094659 CGCCGAGCTGGTAGTTGTG 61.095 63.158 0.00 0.00 41.21 3.33
608 609 2.391389 GCCGAGCTGGTAGTTGTGC 61.391 63.158 0.00 0.00 41.21 4.57
609 610 1.293498 CCGAGCTGGTAGTTGTGCT 59.707 57.895 0.00 0.00 38.59 4.40
610 611 0.320771 CCGAGCTGGTAGTTGTGCTT 60.321 55.000 0.00 0.00 35.76 3.91
611 612 0.792640 CGAGCTGGTAGTTGTGCTTG 59.207 55.000 0.00 0.00 35.76 4.01
612 613 1.160137 GAGCTGGTAGTTGTGCTTGG 58.840 55.000 0.00 0.00 35.76 3.61
613 614 0.764890 AGCTGGTAGTTGTGCTTGGA 59.235 50.000 0.00 0.00 30.96 3.53
614 615 1.160137 GCTGGTAGTTGTGCTTGGAG 58.840 55.000 0.00 0.00 0.00 3.86
615 616 1.160137 CTGGTAGTTGTGCTTGGAGC 58.840 55.000 0.00 0.00 42.82 4.70
616 617 0.602638 TGGTAGTTGTGCTTGGAGCG 60.603 55.000 0.00 0.00 46.26 5.03
623 624 3.663176 TGCTTGGAGCGCAACAGC 61.663 61.111 11.47 12.07 46.26 4.40
646 647 2.753043 CTGCATGGGTGGTGCCTC 60.753 66.667 0.00 0.00 41.83 4.70
647 648 3.259314 TGCATGGGTGGTGCCTCT 61.259 61.111 0.00 0.00 41.83 3.69
648 649 2.753043 GCATGGGTGGTGCCTCTG 60.753 66.667 0.00 0.00 36.61 3.35
649 650 2.759114 CATGGGTGGTGCCTCTGT 59.241 61.111 0.00 0.00 37.43 3.41
650 651 1.075482 CATGGGTGGTGCCTCTGTT 59.925 57.895 0.00 0.00 37.43 3.16
651 652 1.075482 ATGGGTGGTGCCTCTGTTG 59.925 57.895 0.00 0.00 37.43 3.33
652 653 2.985847 GGGTGGTGCCTCTGTTGC 60.986 66.667 0.00 0.00 37.43 4.17
653 654 3.357079 GGTGGTGCCTCTGTTGCG 61.357 66.667 0.00 0.00 0.00 4.85
654 655 2.591715 GTGGTGCCTCTGTTGCGT 60.592 61.111 0.00 0.00 0.00 5.24
655 656 2.591429 TGGTGCCTCTGTTGCGTG 60.591 61.111 0.00 0.00 0.00 5.34
656 657 2.280797 GGTGCCTCTGTTGCGTGA 60.281 61.111 0.00 0.00 0.00 4.35
657 658 2.320587 GGTGCCTCTGTTGCGTGAG 61.321 63.158 0.00 0.00 0.00 3.51
658 659 1.300931 GTGCCTCTGTTGCGTGAGA 60.301 57.895 0.00 0.00 32.44 3.27
659 660 1.005748 TGCCTCTGTTGCGTGAGAG 60.006 57.895 0.00 0.00 36.28 3.20
661 662 4.586618 CTCTGTTGCGTGAGAGGG 57.413 61.111 0.00 0.00 33.37 4.30
662 663 1.967535 CTCTGTTGCGTGAGAGGGA 59.032 57.895 0.00 0.00 33.37 4.20
663 664 0.318441 CTCTGTTGCGTGAGAGGGAA 59.682 55.000 0.00 0.00 33.37 3.97
664 665 0.318441 TCTGTTGCGTGAGAGGGAAG 59.682 55.000 0.00 0.00 0.00 3.46
665 666 0.318441 CTGTTGCGTGAGAGGGAAGA 59.682 55.000 0.00 0.00 0.00 2.87
666 667 0.976641 TGTTGCGTGAGAGGGAAGAT 59.023 50.000 0.00 0.00 0.00 2.40
667 668 1.338105 TGTTGCGTGAGAGGGAAGATG 60.338 52.381 0.00 0.00 0.00 2.90
668 669 0.976641 TTGCGTGAGAGGGAAGATGT 59.023 50.000 0.00 0.00 0.00 3.06
669 670 0.976641 TGCGTGAGAGGGAAGATGTT 59.023 50.000 0.00 0.00 0.00 2.71
670 671 1.338105 TGCGTGAGAGGGAAGATGTTG 60.338 52.381 0.00 0.00 0.00 3.33
671 672 1.066858 GCGTGAGAGGGAAGATGTTGA 60.067 52.381 0.00 0.00 0.00 3.18
672 673 2.611518 CGTGAGAGGGAAGATGTTGAC 58.388 52.381 0.00 0.00 0.00 3.18
673 674 2.611518 GTGAGAGGGAAGATGTTGACG 58.388 52.381 0.00 0.00 0.00 4.35
674 675 1.550524 TGAGAGGGAAGATGTTGACGG 59.449 52.381 0.00 0.00 0.00 4.79
675 676 0.905357 AGAGGGAAGATGTTGACGGG 59.095 55.000 0.00 0.00 0.00 5.28
676 677 0.613777 GAGGGAAGATGTTGACGGGT 59.386 55.000 0.00 0.00 0.00 5.28
677 678 1.829222 GAGGGAAGATGTTGACGGGTA 59.171 52.381 0.00 0.00 0.00 3.69
678 679 2.235402 GAGGGAAGATGTTGACGGGTAA 59.765 50.000 0.00 0.00 0.00 2.85
679 680 2.844348 AGGGAAGATGTTGACGGGTAAT 59.156 45.455 0.00 0.00 0.00 1.89
680 681 2.943033 GGGAAGATGTTGACGGGTAATG 59.057 50.000 0.00 0.00 0.00 1.90
681 682 3.606687 GGAAGATGTTGACGGGTAATGT 58.393 45.455 0.00 0.00 0.00 2.71
682 683 3.374058 GGAAGATGTTGACGGGTAATGTG 59.626 47.826 0.00 0.00 0.00 3.21
683 684 3.973206 AGATGTTGACGGGTAATGTGA 57.027 42.857 0.00 0.00 0.00 3.58
684 685 3.861840 AGATGTTGACGGGTAATGTGAG 58.138 45.455 0.00 0.00 0.00 3.51
685 686 3.513912 AGATGTTGACGGGTAATGTGAGA 59.486 43.478 0.00 0.00 0.00 3.27
686 687 3.034721 TGTTGACGGGTAATGTGAGAC 57.965 47.619 0.00 0.00 0.00 3.36
687 688 2.289195 TGTTGACGGGTAATGTGAGACC 60.289 50.000 0.00 0.00 34.75 3.85
688 689 1.634960 TGACGGGTAATGTGAGACCA 58.365 50.000 0.00 0.00 37.47 4.02
689 690 1.972075 TGACGGGTAATGTGAGACCAA 59.028 47.619 0.00 0.00 37.47 3.67
690 691 2.028476 TGACGGGTAATGTGAGACCAAG 60.028 50.000 0.00 0.00 37.47 3.61
691 692 1.338769 ACGGGTAATGTGAGACCAAGC 60.339 52.381 0.00 0.00 37.47 4.01
692 693 1.369625 GGGTAATGTGAGACCAAGCG 58.630 55.000 0.00 0.00 37.47 4.68
693 694 1.369625 GGTAATGTGAGACCAAGCGG 58.630 55.000 0.00 0.00 35.65 5.52
694 695 1.066430 GGTAATGTGAGACCAAGCGGA 60.066 52.381 0.00 0.00 35.65 5.54
695 696 2.000447 GTAATGTGAGACCAAGCGGAC 59.000 52.381 0.00 0.00 35.59 4.79
696 697 0.670546 AATGTGAGACCAAGCGGACG 60.671 55.000 0.00 0.00 35.59 4.79
697 698 2.432628 GTGAGACCAAGCGGACGG 60.433 66.667 0.00 0.00 35.59 4.79
698 699 4.373116 TGAGACCAAGCGGACGGC 62.373 66.667 0.00 0.00 44.05 5.68
707 708 2.954868 GCGGACGGCTACGATGTG 60.955 66.667 0.00 0.00 44.60 3.21
708 709 2.954868 CGGACGGCTACGATGTGC 60.955 66.667 0.00 0.00 44.60 4.57
709 710 2.183300 GGACGGCTACGATGTGCA 59.817 61.111 0.00 0.00 44.60 4.57
710 711 1.227263 GGACGGCTACGATGTGCAT 60.227 57.895 0.00 0.00 44.60 3.96
711 712 1.490693 GGACGGCTACGATGTGCATG 61.491 60.000 0.00 0.00 44.60 4.06
712 713 0.527600 GACGGCTACGATGTGCATGA 60.528 55.000 0.00 0.00 44.60 3.07
713 714 0.104855 ACGGCTACGATGTGCATGAT 59.895 50.000 0.00 0.00 44.60 2.45
714 715 0.786581 CGGCTACGATGTGCATGATC 59.213 55.000 0.00 0.00 44.60 2.92
715 716 0.786581 GGCTACGATGTGCATGATCG 59.213 55.000 22.55 22.55 46.55 3.69
716 717 0.786581 GCTACGATGTGCATGATCGG 59.213 55.000 25.80 15.12 45.64 4.18
717 718 1.602920 GCTACGATGTGCATGATCGGA 60.603 52.381 25.80 20.16 45.64 4.55
718 719 2.928301 GCTACGATGTGCATGATCGGAT 60.928 50.000 25.80 14.11 45.64 4.18
719 720 1.505425 ACGATGTGCATGATCGGATG 58.495 50.000 25.80 7.52 45.64 3.51
720 721 1.069049 ACGATGTGCATGATCGGATGA 59.931 47.619 25.80 0.00 45.64 2.92
721 722 2.289257 ACGATGTGCATGATCGGATGAT 60.289 45.455 25.80 9.51 45.64 2.45
722 723 2.740447 CGATGTGCATGATCGGATGATT 59.260 45.455 18.55 0.00 39.23 2.57
723 724 3.928375 CGATGTGCATGATCGGATGATTA 59.072 43.478 18.55 0.00 39.23 1.75
724 725 4.201656 CGATGTGCATGATCGGATGATTAC 60.202 45.833 18.55 0.00 39.23 1.89
725 726 3.402110 TGTGCATGATCGGATGATTACC 58.598 45.455 0.00 0.00 34.09 2.85
726 727 3.181456 TGTGCATGATCGGATGATTACCA 60.181 43.478 0.00 0.00 34.09 3.25
727 728 3.814842 GTGCATGATCGGATGATTACCAA 59.185 43.478 0.00 0.00 34.09 3.67
728 729 4.067192 TGCATGATCGGATGATTACCAAG 58.933 43.478 0.00 0.00 34.09 3.61
729 730 4.202346 TGCATGATCGGATGATTACCAAGA 60.202 41.667 0.00 0.00 34.09 3.02
730 731 4.153117 GCATGATCGGATGATTACCAAGAC 59.847 45.833 0.00 0.00 34.09 3.01
731 732 3.977427 TGATCGGATGATTACCAAGACG 58.023 45.455 0.00 0.00 34.09 4.18
732 733 2.882927 TCGGATGATTACCAAGACGG 57.117 50.000 0.00 0.00 42.50 4.79
733 734 1.202486 TCGGATGATTACCAAGACGGC 60.202 52.381 0.00 0.00 39.03 5.68
734 735 1.202533 CGGATGATTACCAAGACGGCT 60.203 52.381 0.00 0.00 39.03 5.52
735 736 2.213499 GGATGATTACCAAGACGGCTG 58.787 52.381 0.00 0.00 39.03 4.85
736 737 2.158957 GGATGATTACCAAGACGGCTGA 60.159 50.000 0.00 0.00 39.03 4.26
737 738 3.495100 GGATGATTACCAAGACGGCTGAT 60.495 47.826 0.00 0.00 39.03 2.90
738 739 4.262463 GGATGATTACCAAGACGGCTGATA 60.262 45.833 0.00 0.00 39.03 2.15
739 740 4.746535 TGATTACCAAGACGGCTGATAA 57.253 40.909 0.00 0.00 39.03 1.75
740 741 4.439057 TGATTACCAAGACGGCTGATAAC 58.561 43.478 0.00 0.00 39.03 1.89
741 742 4.161565 TGATTACCAAGACGGCTGATAACT 59.838 41.667 0.00 0.00 39.03 2.24
742 743 2.674796 ACCAAGACGGCTGATAACTC 57.325 50.000 0.00 0.00 39.03 3.01
743 744 1.899814 ACCAAGACGGCTGATAACTCA 59.100 47.619 0.00 0.00 39.03 3.41
744 745 2.271800 CCAAGACGGCTGATAACTCAC 58.728 52.381 0.00 0.00 0.00 3.51
745 746 2.353704 CCAAGACGGCTGATAACTCACA 60.354 50.000 0.00 0.00 0.00 3.58
746 747 3.525537 CAAGACGGCTGATAACTCACAT 58.474 45.455 0.00 0.00 0.00 3.21
747 748 3.895232 AGACGGCTGATAACTCACATT 57.105 42.857 0.00 0.00 0.00 2.71
748 749 4.207891 AGACGGCTGATAACTCACATTT 57.792 40.909 0.00 0.00 0.00 2.32
749 750 5.339008 AGACGGCTGATAACTCACATTTA 57.661 39.130 0.00 0.00 0.00 1.40
750 751 5.918608 AGACGGCTGATAACTCACATTTAT 58.081 37.500 0.00 0.00 0.00 1.40
751 752 5.986135 AGACGGCTGATAACTCACATTTATC 59.014 40.000 0.00 0.00 36.74 1.75
752 753 5.670485 ACGGCTGATAACTCACATTTATCA 58.330 37.500 0.00 5.04 41.53 2.15
753 754 6.291377 ACGGCTGATAACTCACATTTATCAT 58.709 36.000 0.00 0.00 42.39 2.45
754 755 6.767902 ACGGCTGATAACTCACATTTATCATT 59.232 34.615 0.00 0.00 42.39 2.57
755 756 7.041780 ACGGCTGATAACTCACATTTATCATTC 60.042 37.037 0.00 2.30 42.39 2.67
756 757 7.293745 GGCTGATAACTCACATTTATCATTCG 58.706 38.462 5.49 0.00 42.39 3.34
757 758 7.293745 GCTGATAACTCACATTTATCATTCGG 58.706 38.462 5.49 0.00 42.39 4.30
758 759 7.189693 TGATAACTCACATTTATCATTCGGC 57.810 36.000 1.51 0.00 39.80 5.54
759 760 6.992123 TGATAACTCACATTTATCATTCGGCT 59.008 34.615 1.51 0.00 39.80 5.52
760 761 7.498900 TGATAACTCACATTTATCATTCGGCTT 59.501 33.333 1.51 0.00 39.80 4.35
761 762 8.902540 ATAACTCACATTTATCATTCGGCTTA 57.097 30.769 0.00 0.00 0.00 3.09
762 763 6.604735 ACTCACATTTATCATTCGGCTTAC 57.395 37.500 0.00 0.00 0.00 2.34
763 764 5.234329 ACTCACATTTATCATTCGGCTTACG 59.766 40.000 0.00 0.00 46.11 3.18
764 765 4.025229 TCACATTTATCATTCGGCTTACGC 60.025 41.667 0.00 0.00 43.86 4.42
774 775 3.938112 GCTTACGCCTAGCATCCG 58.062 61.111 0.00 0.00 38.51 4.18
775 776 2.310966 GCTTACGCCTAGCATCCGC 61.311 63.158 0.00 0.00 38.51 5.54
776 777 1.664965 CTTACGCCTAGCATCCGCC 60.665 63.158 0.00 0.00 39.83 6.13
954 964 0.687427 CCCATTTCCACCCACCATCC 60.687 60.000 0.00 0.00 0.00 3.51
955 965 0.040942 CCATTTCCACCCACCATCCA 59.959 55.000 0.00 0.00 0.00 3.41
1008 1018 4.864334 CCGCTCTGGATGGCCACC 62.864 72.222 8.16 12.87 39.92 4.61
1367 1402 3.754766 GGCTTACGAGGTAGTTGGG 57.245 57.895 0.00 0.00 0.00 4.12
1370 1405 1.274447 GCTTACGAGGTAGTTGGGTGT 59.726 52.381 0.00 0.00 0.00 4.16
1567 1602 7.201548 GCAACTCTTTTCTCTTGCAAAATTTCA 60.202 33.333 0.00 0.00 39.09 2.69
1776 1811 4.381292 GGATCCATTCCTTTTTGCTCTGTG 60.381 45.833 6.95 0.00 41.78 3.66
1846 1881 1.412710 AGCCATGTCGATTATCACCGT 59.587 47.619 0.00 0.00 0.00 4.83
1868 1903 5.006746 CGTAGTTGTGAGGATCTTTATTGCC 59.993 44.000 0.00 0.00 34.92 4.52
1869 1904 4.273318 AGTTGTGAGGATCTTTATTGCCC 58.727 43.478 0.00 0.00 34.92 5.36
1870 1905 4.018050 AGTTGTGAGGATCTTTATTGCCCT 60.018 41.667 0.00 0.00 34.92 5.19
1871 1906 5.191722 AGTTGTGAGGATCTTTATTGCCCTA 59.808 40.000 0.00 0.00 34.92 3.53
1872 1907 5.296151 TGTGAGGATCTTTATTGCCCTAG 57.704 43.478 0.00 0.00 34.92 3.02
1873 1908 4.103153 TGTGAGGATCTTTATTGCCCTAGG 59.897 45.833 0.06 0.06 34.92 3.02
1874 1909 4.348168 GTGAGGATCTTTATTGCCCTAGGA 59.652 45.833 11.48 0.00 34.92 2.94
1875 1910 5.013599 GTGAGGATCTTTATTGCCCTAGGAT 59.986 44.000 11.48 0.00 34.92 3.24
1876 1911 6.213600 GTGAGGATCTTTATTGCCCTAGGATA 59.786 42.308 11.48 0.00 34.92 2.59
1877 1912 6.441924 TGAGGATCTTTATTGCCCTAGGATAG 59.558 42.308 11.48 0.00 35.18 2.08
1878 1913 6.575411 AGGATCTTTATTGCCCTAGGATAGA 58.425 40.000 11.48 0.00 42.77 1.98
1879 1914 6.671779 AGGATCTTTATTGCCCTAGGATAGAG 59.328 42.308 11.48 5.33 42.77 2.43
1880 1915 6.126911 GGATCTTTATTGCCCTAGGATAGAGG 60.127 46.154 11.48 0.00 42.77 3.69
1881 1916 5.977533 TCTTTATTGCCCTAGGATAGAGGA 58.022 41.667 11.48 0.00 42.77 3.71
1882 1917 6.390504 TCTTTATTGCCCTAGGATAGAGGAA 58.609 40.000 11.48 0.23 42.77 3.36
1915 2017 1.402787 CACCCTGCTTCCAACAAACT 58.597 50.000 0.00 0.00 0.00 2.66
1922 2024 4.130118 CTGCTTCCAACAAACTAGTGACT 58.870 43.478 0.00 0.00 0.00 3.41
2090 2263 3.009723 TCATTTTGATTCTCTCCGCACC 58.990 45.455 0.00 0.00 0.00 5.01
2292 2494 6.230472 ACATTTTCCTTTTGCTTGGTAATCC 58.770 36.000 0.00 0.00 0.00 3.01
2717 2987 1.962100 GGCTATAGTGAAGGCTACGGT 59.038 52.381 0.84 0.00 36.63 4.83
3020 3299 3.827524 GCGTGGTGCAATTTCGTG 58.172 55.556 0.00 0.00 45.45 4.35
3021 3300 1.729131 GCGTGGTGCAATTTCGTGG 60.729 57.895 0.00 0.00 45.45 4.94
3023 3302 1.659794 GTGGTGCAATTTCGTGGCT 59.340 52.632 0.00 0.00 0.00 4.75
3025 3304 1.106351 TGGTGCAATTTCGTGGCTGT 61.106 50.000 0.00 0.00 0.00 4.40
3026 3305 0.387239 GGTGCAATTTCGTGGCTGTC 60.387 55.000 0.00 0.00 0.00 3.51
3045 3324 2.100197 TCATGGACTACCGAAGACAGG 58.900 52.381 0.00 0.00 39.42 4.00
3234 3542 6.815089 AGTGAACATTTGTGCTCCAATTAAA 58.185 32.000 0.00 0.00 31.81 1.52
3297 3764 1.928868 AAGGGAGCAAAAGACCATGG 58.071 50.000 11.19 11.19 0.00 3.66
3359 3827 1.710013 ACTACAAACACGGATGCTCG 58.290 50.000 0.00 0.00 0.00 5.03
3362 3830 0.955428 ACAAACACGGATGCTCGCAT 60.955 50.000 3.70 3.70 39.69 4.73
3364 3832 1.006832 AAACACGGATGCTCGCATAC 58.993 50.000 4.10 4.04 36.70 2.39
3365 3833 0.108377 AACACGGATGCTCGCATACA 60.108 50.000 14.02 0.00 37.11 2.29
3366 3834 0.104855 ACACGGATGCTCGCATACAT 59.895 50.000 14.02 0.00 37.11 2.29
3367 3835 0.509929 CACGGATGCTCGCATACATG 59.490 55.000 14.02 5.38 37.11 3.21
3387 3855 1.334419 GCATCCTATGAATGCACGCAC 60.334 52.381 0.00 0.00 40.72 5.34
3408 3876 2.041081 CACCCTATCCCTTTGAACACCA 59.959 50.000 0.00 0.00 0.00 4.17
3409 3877 2.926329 ACCCTATCCCTTTGAACACCAT 59.074 45.455 0.00 0.00 0.00 3.55
3427 3895 2.245942 CATCGAGATATTGAGTCGGCG 58.754 52.381 0.00 0.00 34.43 6.46
3439 3907 3.702330 TGAGTCGGCGTAACATCATAAG 58.298 45.455 6.85 0.00 0.00 1.73
3455 3923 6.761714 ACATCATAAGATTAACGAAGTCACCC 59.238 38.462 0.00 0.00 32.29 4.61
3458 3926 4.360951 AAGATTAACGAAGTCACCCCAA 57.639 40.909 0.00 0.00 45.00 4.12
3475 3943 2.293399 CCCAAGTGCCTTTGTAGTTGAC 59.707 50.000 0.00 0.00 39.16 3.18
3507 3975 2.941064 CCTCACATTGAACGAGCATCAT 59.059 45.455 0.00 0.00 33.17 2.45
3510 3978 1.935873 ACATTGAACGAGCATCATCGG 59.064 47.619 0.91 0.00 46.91 4.18
3523 3991 6.152932 AGCATCATCGGCTGAAATAAATTT 57.847 33.333 0.00 0.00 40.80 1.82
3554 4022 2.033194 GCACTACCGGCAAGTCCAC 61.033 63.158 0.00 0.00 34.01 4.02
3563 4031 2.539338 GCAAGTCCACGGCGTGAAA 61.539 57.895 38.91 24.14 35.23 2.69
3579 4047 3.379057 CGTGAAACTTGGTAGGTTGGTTT 59.621 43.478 0.00 0.00 29.33 3.27
3580 4048 4.496840 CGTGAAACTTGGTAGGTTGGTTTC 60.497 45.833 0.00 0.00 43.16 2.78
3631 4099 3.120649 GGTTCAACTCGCACAGTATCAAC 60.121 47.826 0.00 0.00 32.30 3.18
3635 4103 4.217767 TCAACTCGCACAGTATCAACTAGT 59.782 41.667 0.00 0.00 32.30 2.57
3637 4105 4.486090 ACTCGCACAGTATCAACTAGTTG 58.514 43.478 26.60 26.60 36.29 3.16
3752 4220 7.870826 ACAACATTATGAAGTTCATGTCGAAA 58.129 30.769 25.48 13.31 37.70 3.46
3764 4232 4.759782 TCATGTCGAAAGAAGGGAGATTC 58.240 43.478 0.00 0.00 45.01 2.52
3775 4243 2.107141 GAGATTCTGGCGACCCGG 59.893 66.667 0.00 0.00 38.98 5.73
3813 4281 7.148639 CGAAGTCTTTGTGCTTAAGTGCTATTA 60.149 37.037 4.02 0.00 0.00 0.98
3885 4353 9.546909 GTTCAATCACACACTTTATTACATCAG 57.453 33.333 0.00 0.00 0.00 2.90
3892 4360 8.729756 CACACACTTTATTACATCAGAAATCCA 58.270 33.333 0.00 0.00 0.00 3.41
3949 4418 8.784994 TGAAGGTCATCTAAATCGAGATACTAC 58.215 37.037 0.00 0.00 34.29 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.063649 CAGCAGGCATCGACATTGC 59.936 57.895 0.73 0.73 39.41 3.56
1 2 1.063649 GCAGCAGGCATCGACATTG 59.936 57.895 0.00 0.00 43.97 2.82
2 3 3.506108 GCAGCAGGCATCGACATT 58.494 55.556 0.00 0.00 43.97 2.71
14 15 3.120385 CGGAGTTGCGATGCAGCA 61.120 61.111 1.53 0.00 42.09 4.41
15 16 3.869272 CCGGAGTTGCGATGCAGC 61.869 66.667 0.00 0.00 40.61 5.25
16 17 3.869272 GCCGGAGTTGCGATGCAG 61.869 66.667 5.05 0.00 40.61 4.41
65 66 4.101790 GTTGCGATGCACCGGGTG 62.102 66.667 22.87 22.87 38.71 4.61
66 67 4.329545 AGTTGCGATGCACCGGGT 62.330 61.111 0.82 0.00 38.71 5.28
67 68 3.499737 GAGTTGCGATGCACCGGG 61.500 66.667 0.82 0.00 38.71 5.73
68 69 3.499737 GGAGTTGCGATGCACCGG 61.500 66.667 0.82 0.00 38.71 5.28
69 70 3.853330 CGGAGTTGCGATGCACCG 61.853 66.667 0.00 0.00 38.71 4.94
70 71 3.499737 CCGGAGTTGCGATGCACC 61.500 66.667 0.00 0.00 38.71 5.01
71 72 4.166011 GCCGGAGTTGCGATGCAC 62.166 66.667 5.05 0.00 38.71 4.57
79 80 4.812476 TCGATGCCGCCGGAGTTG 62.812 66.667 7.68 0.00 35.37 3.16
80 81 4.814294 GTCGATGCCGCCGGAGTT 62.814 66.667 7.68 0.00 35.37 3.01
92 93 2.587194 GATGCAGCGGCTGTCGAT 60.587 61.111 28.88 18.70 42.43 3.59
124 125 4.465512 CAATGCAGCGGCCACGAC 62.466 66.667 6.32 0.00 44.60 4.34
135 136 3.120385 CGTCGGAGCTGCAATGCA 61.120 61.111 7.99 7.99 36.92 3.96
136 137 2.815211 TCGTCGGAGCTGCAATGC 60.815 61.111 5.91 0.00 0.00 3.56
137 138 2.792290 CGTCGTCGGAGCTGCAATG 61.792 63.158 5.91 0.00 0.00 2.82
138 139 2.507102 CGTCGTCGGAGCTGCAAT 60.507 61.111 5.91 0.00 0.00 3.56
139 140 3.891586 GACGTCGTCGGAGCTGCAA 62.892 63.158 10.05 0.00 41.85 4.08
140 141 4.400109 GACGTCGTCGGAGCTGCA 62.400 66.667 10.05 0.00 41.85 4.41
155 156 3.849953 GATGCAACGGCCGTCGAC 61.850 66.667 34.29 23.55 42.43 4.20
156 157 4.365505 TGATGCAACGGCCGTCGA 62.366 61.111 34.29 18.83 42.43 4.20
157 158 4.147322 GTGATGCAACGGCCGTCG 62.147 66.667 34.29 24.18 45.88 5.12
158 159 3.027170 CTGTGATGCAACGGCCGTC 62.027 63.158 34.29 21.20 40.13 4.79
159 160 3.049674 CTGTGATGCAACGGCCGT 61.050 61.111 28.70 28.70 40.13 5.68
160 161 4.465512 GCTGTGATGCAACGGCCG 62.466 66.667 26.86 26.86 45.08 6.13
163 164 0.387622 CCAAAGCTGTGATGCAACGG 60.388 55.000 5.12 0.00 34.99 4.44
164 165 1.005294 GCCAAAGCTGTGATGCAACG 61.005 55.000 5.12 0.00 35.50 4.10
165 166 1.005294 CGCCAAAGCTGTGATGCAAC 61.005 55.000 5.12 0.00 36.60 4.17
166 167 1.286570 CGCCAAAGCTGTGATGCAA 59.713 52.632 5.12 0.00 36.60 4.08
167 168 2.628696 CCGCCAAAGCTGTGATGCA 61.629 57.895 5.12 0.00 36.60 3.96
168 169 2.180017 CCGCCAAAGCTGTGATGC 59.820 61.111 5.12 0.00 36.60 3.91
169 170 2.180017 GCCGCCAAAGCTGTGATG 59.820 61.111 5.12 0.00 36.60 3.07
170 171 3.064324 GGCCGCCAAAGCTGTGAT 61.064 61.111 5.12 0.00 36.60 3.06
207 208 3.976902 GAGTTGCAATGCAGCGGCC 62.977 63.158 15.96 6.44 44.23 6.13
208 209 2.505557 GAGTTGCAATGCAGCGGC 60.506 61.111 15.96 9.02 44.23 6.53
209 210 1.154093 CAGAGTTGCAATGCAGCGG 60.154 57.895 15.96 6.72 44.23 5.52
210 211 4.452753 CAGAGTTGCAATGCAGCG 57.547 55.556 15.96 0.00 44.23 5.18
220 221 3.726517 CCAACGCCGGCAGAGTTG 61.727 66.667 28.50 28.50 43.31 3.16
262 263 4.479993 AGCTGTGATGAGCCGGCC 62.480 66.667 26.15 15.80 40.08 6.13
263 264 2.894387 GAGCTGTGATGAGCCGGC 60.894 66.667 21.89 21.89 40.08 6.13
264 265 2.202987 GGAGCTGTGATGAGCCGG 60.203 66.667 0.00 0.00 40.08 6.13
265 266 2.360949 ATCGGAGCTGTGATGAGCCG 62.361 60.000 0.00 0.00 40.08 5.52
266 267 0.879400 CATCGGAGCTGTGATGAGCC 60.879 60.000 16.29 0.00 43.68 4.70
267 268 0.879400 CCATCGGAGCTGTGATGAGC 60.879 60.000 20.91 0.00 43.68 4.26
268 269 0.879400 GCCATCGGAGCTGTGATGAG 60.879 60.000 20.91 13.89 43.68 2.90
269 270 1.144716 GCCATCGGAGCTGTGATGA 59.855 57.895 20.91 0.33 43.68 2.92
270 271 2.242572 CGCCATCGGAGCTGTGATG 61.243 63.158 14.91 14.91 41.27 3.07
271 272 2.107750 CGCCATCGGAGCTGTGAT 59.892 61.111 0.00 0.00 0.00 3.06
272 273 3.356639 GACGCCATCGGAGCTGTGA 62.357 63.158 0.00 0.00 40.69 3.58
273 274 2.887568 GACGCCATCGGAGCTGTG 60.888 66.667 0.00 0.00 40.69 3.66
287 288 4.498520 AGGCAGCGGTCATCGACG 62.499 66.667 0.00 0.00 42.43 5.12
288 289 2.583593 GAGGCAGCGGTCATCGAC 60.584 66.667 0.00 0.00 42.43 4.20
289 290 3.068064 TGAGGCAGCGGTCATCGA 61.068 61.111 0.00 0.00 42.43 3.59
290 291 2.887568 GTGAGGCAGCGGTCATCG 60.888 66.667 0.00 0.00 42.76 3.84
291 292 1.812922 CTGTGAGGCAGCGGTCATC 60.813 63.158 0.00 0.00 38.52 2.92
292 293 2.267006 CTGTGAGGCAGCGGTCAT 59.733 61.111 0.00 0.00 38.52 3.06
302 303 3.368190 CTCTGCCGGAGCTGTGAGG 62.368 68.421 5.05 0.00 40.80 3.86
303 304 2.183811 CTCTGCCGGAGCTGTGAG 59.816 66.667 5.05 0.00 40.80 3.51
304 305 2.601666 ACTCTGCCGGAGCTGTGA 60.602 61.111 5.05 0.00 45.48 3.58
305 306 2.125753 GACTCTGCCGGAGCTGTG 60.126 66.667 5.05 0.00 45.48 3.66
306 307 3.753434 CGACTCTGCCGGAGCTGT 61.753 66.667 5.05 0.00 45.48 4.40
307 308 3.443925 TCGACTCTGCCGGAGCTG 61.444 66.667 5.05 0.00 45.48 4.24
308 309 3.444805 GTCGACTCTGCCGGAGCT 61.445 66.667 5.05 0.00 45.48 4.09
309 310 4.838486 CGTCGACTCTGCCGGAGC 62.838 72.222 14.70 0.00 45.48 4.70
310 311 4.838486 GCGTCGACTCTGCCGGAG 62.838 72.222 14.70 0.00 46.87 4.63
327 328 3.869272 GAGTTGCGATGCAGCGGG 61.869 66.667 27.22 0.00 44.23 6.13
328 329 3.869272 GGAGTTGCGATGCAGCGG 61.869 66.667 27.22 8.00 44.23 5.52
329 330 4.214383 CGGAGTTGCGATGCAGCG 62.214 66.667 22.00 22.00 44.23 5.18
330 331 2.176273 ATCGGAGTTGCGATGCAGC 61.176 57.895 7.74 0.00 40.61 5.25
331 332 1.640069 CATCGGAGTTGCGATGCAG 59.360 57.895 20.13 1.03 40.61 4.41
332 333 1.815003 CCATCGGAGTTGCGATGCA 60.815 57.895 24.63 0.00 40.20 3.96
333 334 3.017323 CCATCGGAGTTGCGATGC 58.983 61.111 24.63 0.00 40.20 3.91
334 335 1.522355 AGCCATCGGAGTTGCGATG 60.522 57.895 23.54 23.54 40.93 3.84
335 336 1.522355 CAGCCATCGGAGTTGCGAT 60.522 57.895 2.56 2.56 0.00 4.58
336 337 2.125552 CAGCCATCGGAGTTGCGA 60.126 61.111 0.00 0.00 0.00 5.10
337 338 3.869272 GCAGCCATCGGAGTTGCG 61.869 66.667 0.00 0.00 0.00 4.85
338 339 2.437359 AGCAGCCATCGGAGTTGC 60.437 61.111 0.00 0.00 35.09 4.17
339 340 2.758089 GCAGCAGCCATCGGAGTTG 61.758 63.158 0.00 0.00 33.58 3.16
340 341 2.437359 GCAGCAGCCATCGGAGTT 60.437 61.111 0.00 0.00 33.58 3.01
341 342 2.547640 AATGCAGCAGCCATCGGAGT 62.548 55.000 0.00 0.00 41.13 3.85
342 343 1.822613 AATGCAGCAGCCATCGGAG 60.823 57.895 0.00 0.00 41.13 4.63
343 344 2.116533 CAATGCAGCAGCCATCGGA 61.117 57.895 0.00 0.00 41.13 4.55
344 345 2.411701 CAATGCAGCAGCCATCGG 59.588 61.111 0.00 0.00 41.13 4.18
345 346 2.278596 GCAATGCAGCAGCCATCG 60.279 61.111 0.00 0.00 41.13 3.84
346 347 2.889617 TGCAATGCAGCAGCCATC 59.110 55.556 2.72 0.00 40.11 3.51
355 356 3.436924 CGCCAGAGCTGCAATGCA 61.437 61.111 7.99 7.99 36.60 3.96
356 357 4.189188 CCGCCAGAGCTGCAATGC 62.189 66.667 1.02 0.00 36.60 3.56
365 366 4.193334 TCATCGACGCCGCCAGAG 62.193 66.667 0.00 0.00 35.37 3.35
366 367 4.492160 GTCATCGACGCCGCCAGA 62.492 66.667 0.00 0.00 35.37 3.86
374 375 1.583967 GAGACAGCGGTCATCGACG 60.584 63.158 19.33 0.00 46.80 5.12
375 376 0.798771 GTGAGACAGCGGTCATCGAC 60.799 60.000 19.33 5.95 46.80 4.20
376 377 1.241315 TGTGAGACAGCGGTCATCGA 61.241 55.000 19.33 0.00 46.80 3.59
377 378 0.799917 CTGTGAGACAGCGGTCATCG 60.800 60.000 19.33 0.00 46.80 3.84
378 379 3.041874 CTGTGAGACAGCGGTCATC 57.958 57.895 19.33 13.16 46.80 2.92
387 388 2.038814 TTTGCCGGAGCTGTGAGACA 62.039 55.000 5.05 0.00 40.80 3.41
388 389 1.294659 CTTTGCCGGAGCTGTGAGAC 61.295 60.000 5.05 0.00 40.80 3.36
389 390 1.004560 CTTTGCCGGAGCTGTGAGA 60.005 57.895 5.05 0.00 40.80 3.27
390 391 1.294659 GACTTTGCCGGAGCTGTGAG 61.295 60.000 5.05 0.00 40.80 3.51
391 392 1.301716 GACTTTGCCGGAGCTGTGA 60.302 57.895 5.05 0.00 40.80 3.58
392 393 2.671177 CGACTTTGCCGGAGCTGTG 61.671 63.158 5.05 0.00 40.80 3.66
393 394 2.357517 CGACTTTGCCGGAGCTGT 60.358 61.111 5.05 0.00 40.80 4.40
394 395 2.048222 TCGACTTTGCCGGAGCTG 60.048 61.111 5.05 0.00 40.80 4.24
395 396 2.048127 GTCGACTTTGCCGGAGCT 60.048 61.111 5.05 0.00 40.80 4.09
396 397 2.357034 TGTCGACTTTGCCGGAGC 60.357 61.111 17.92 0.00 40.48 4.70
397 398 2.027625 GGTGTCGACTTTGCCGGAG 61.028 63.158 17.92 0.00 0.00 4.63
398 399 2.029964 GGTGTCGACTTTGCCGGA 59.970 61.111 17.92 0.00 0.00 5.14
399 400 3.047877 GGGTGTCGACTTTGCCGG 61.048 66.667 17.92 0.00 0.00 6.13
400 401 3.411351 CGGGTGTCGACTTTGCCG 61.411 66.667 17.92 6.76 42.43 5.69
401 402 3.723348 GCGGGTGTCGACTTTGCC 61.723 66.667 17.92 12.87 42.43 4.52
402 403 2.665185 AGCGGGTGTCGACTTTGC 60.665 61.111 17.92 14.73 42.43 3.68
403 404 2.954753 GCAGCGGGTGTCGACTTTG 61.955 63.158 17.92 5.27 42.43 2.77
404 405 2.665185 GCAGCGGGTGTCGACTTT 60.665 61.111 17.92 0.00 42.43 2.66
405 406 3.240134 ATGCAGCGGGTGTCGACTT 62.240 57.895 17.92 0.00 42.43 3.01
406 407 3.649277 GATGCAGCGGGTGTCGACT 62.649 63.158 17.92 0.00 42.43 4.18
407 408 3.188786 GATGCAGCGGGTGTCGAC 61.189 66.667 9.11 9.11 42.43 4.20
408 409 4.794439 CGATGCAGCGGGTGTCGA 62.794 66.667 18.26 0.00 42.43 4.20
412 413 4.465512 GTTGCGATGCAGCGGGTG 62.466 66.667 27.22 2.14 40.61 4.61
413 414 4.704833 AGTTGCGATGCAGCGGGT 62.705 61.111 27.22 0.00 44.23 5.28
414 415 3.869272 GAGTTGCGATGCAGCGGG 61.869 66.667 27.22 0.00 44.23 6.13
415 416 3.869272 GGAGTTGCGATGCAGCGG 61.869 66.667 27.22 8.00 44.23 5.52
416 417 4.214383 CGGAGTTGCGATGCAGCG 62.214 66.667 22.00 22.00 44.23 5.18
417 418 2.176273 ATCGGAGTTGCGATGCAGC 61.176 57.895 7.74 0.00 40.61 5.25
418 419 1.640069 CATCGGAGTTGCGATGCAG 59.360 57.895 20.13 1.03 40.61 4.41
419 420 1.815003 CCATCGGAGTTGCGATGCA 60.815 57.895 24.63 0.00 40.20 3.96
420 421 3.017323 CCATCGGAGTTGCGATGC 58.983 61.111 24.63 0.00 40.20 3.91
421 422 2.537560 GGCCATCGGAGTTGCGATG 61.538 63.158 23.54 23.54 40.93 3.84
422 423 2.203070 GGCCATCGGAGTTGCGAT 60.203 61.111 0.00 2.56 0.00 4.58
423 424 4.812476 CGGCCATCGGAGTTGCGA 62.812 66.667 2.24 0.00 34.75 5.10
426 427 3.197790 CAGCGGCCATCGGAGTTG 61.198 66.667 2.24 0.00 39.69 3.16
429 430 4.923942 ATGCAGCGGCCATCGGAG 62.924 66.667 6.32 0.00 40.13 4.63
430 431 4.916293 GATGCAGCGGCCATCGGA 62.916 66.667 6.32 0.00 40.13 4.55
462 463 3.166630 GCAGTGAGCGTCGACGAC 61.167 66.667 39.74 29.67 43.02 4.34
471 472 2.001159 CTGAGTTCTGATGCAGTGAGC 58.999 52.381 0.00 0.00 45.96 4.26
472 473 3.252400 GTCTGAGTTCTGATGCAGTGAG 58.748 50.000 0.00 0.00 32.61 3.51
473 474 2.352127 CGTCTGAGTTCTGATGCAGTGA 60.352 50.000 0.00 0.00 32.61 3.41
474 475 1.991264 CGTCTGAGTTCTGATGCAGTG 59.009 52.381 0.00 0.00 32.61 3.66
475 476 2.360553 CGTCTGAGTTCTGATGCAGT 57.639 50.000 0.00 0.00 32.61 4.40
479 480 0.803768 CGGGCGTCTGAGTTCTGATG 60.804 60.000 0.00 4.43 34.97 3.07
480 481 1.513158 CGGGCGTCTGAGTTCTGAT 59.487 57.895 0.00 0.00 0.00 2.90
481 482 2.962569 CGGGCGTCTGAGTTCTGA 59.037 61.111 0.00 0.00 0.00 3.27
482 483 2.811317 GCGGGCGTCTGAGTTCTG 60.811 66.667 0.00 0.00 0.00 3.02
483 484 2.992114 AGCGGGCGTCTGAGTTCT 60.992 61.111 0.00 0.00 0.00 3.01
484 485 2.811317 CAGCGGGCGTCTGAGTTC 60.811 66.667 0.00 0.00 33.54 3.01
510 511 4.873129 CCATCGACACCGCCGGAG 62.873 72.222 11.71 3.87 35.37 4.63
517 518 3.799755 GCAACGGCCATCGACACC 61.800 66.667 2.24 0.00 42.43 4.16
518 519 2.309764 GATGCAACGGCCATCGACAC 62.310 60.000 2.24 0.00 42.43 3.67
519 520 2.046411 ATGCAACGGCCATCGACA 60.046 55.556 2.24 0.00 42.43 4.35
520 521 2.709475 GATGCAACGGCCATCGAC 59.291 61.111 2.24 0.00 42.43 4.20
521 522 2.889988 CGATGCAACGGCCATCGA 60.890 61.111 21.95 0.00 45.41 3.59
522 523 4.596180 GCGATGCAACGGCCATCG 62.596 66.667 18.44 22.06 45.38 3.84
523 524 3.459378 CTGCGATGCAACGGCCATC 62.459 63.158 18.44 1.27 38.41 3.51
524 525 3.511595 CTGCGATGCAACGGCCAT 61.512 61.111 18.44 0.00 38.41 4.40
527 528 4.527157 GAGCTGCGATGCAACGGC 62.527 66.667 18.44 13.39 38.41 5.68
528 529 3.869272 GGAGCTGCGATGCAACGG 61.869 66.667 18.44 3.38 38.41 4.44
529 530 4.214383 CGGAGCTGCGATGCAACG 62.214 66.667 24.56 12.54 38.41 4.10
530 531 2.815211 TCGGAGCTGCGATGCAAC 60.815 61.111 27.32 0.00 38.41 4.17
531 532 2.815211 GTCGGAGCTGCGATGCAA 60.815 61.111 32.89 7.85 38.41 4.08
532 533 3.995219 CTGTCGGAGCTGCGATGCA 62.995 63.158 32.89 24.43 36.92 3.96
533 534 3.260483 CTGTCGGAGCTGCGATGC 61.260 66.667 32.89 21.16 0.00 3.91
534 535 1.875813 GACTGTCGGAGCTGCGATG 60.876 63.158 32.89 27.57 0.00 3.84
535 536 1.670949 ATGACTGTCGGAGCTGCGAT 61.671 55.000 32.89 17.98 0.00 4.58
536 537 1.877576 AATGACTGTCGGAGCTGCGA 61.878 55.000 27.32 27.32 0.00 5.10
537 538 1.446792 AATGACTGTCGGAGCTGCG 60.447 57.895 22.84 22.84 0.00 5.18
538 539 1.975363 GCAATGACTGTCGGAGCTGC 61.975 60.000 2.98 0.00 0.00 5.25
539 540 0.671472 TGCAATGACTGTCGGAGCTG 60.671 55.000 15.64 5.35 0.00 4.24
540 541 0.251354 ATGCAATGACTGTCGGAGCT 59.749 50.000 15.64 0.00 0.00 4.09
541 542 0.654683 GATGCAATGACTGTCGGAGC 59.345 55.000 2.98 7.20 0.00 4.70
542 543 0.926155 CGATGCAATGACTGTCGGAG 59.074 55.000 2.98 0.00 0.00 4.63
543 544 1.083806 GCGATGCAATGACTGTCGGA 61.084 55.000 2.98 0.00 33.26 4.55
544 545 1.349627 GCGATGCAATGACTGTCGG 59.650 57.895 2.98 0.00 33.26 4.79
545 546 0.025898 CTGCGATGCAATGACTGTCG 59.974 55.000 2.98 0.00 38.41 4.35
546 547 0.247974 GCTGCGATGCAATGACTGTC 60.248 55.000 0.00 0.00 38.41 3.51
547 548 0.675837 AGCTGCGATGCAATGACTGT 60.676 50.000 0.00 0.00 38.41 3.55
548 549 0.450583 AAGCTGCGATGCAATGACTG 59.549 50.000 0.00 0.00 38.41 3.51
549 550 0.731417 GAAGCTGCGATGCAATGACT 59.269 50.000 0.00 0.00 38.41 3.41
550 551 0.588233 CGAAGCTGCGATGCAATGAC 60.588 55.000 9.01 0.00 38.41 3.06
551 552 1.708193 CCGAAGCTGCGATGCAATGA 61.708 55.000 18.02 0.00 38.41 2.57
552 553 1.298116 CCGAAGCTGCGATGCAATG 60.298 57.895 18.02 0.00 38.41 2.82
553 554 1.746615 ACCGAAGCTGCGATGCAAT 60.747 52.632 18.02 0.00 38.41 3.56
554 555 2.358615 ACCGAAGCTGCGATGCAA 60.359 55.556 18.02 0.00 38.41 4.08
555 556 3.120385 CACCGAAGCTGCGATGCA 61.120 61.111 18.02 0.00 36.92 3.96
556 557 3.869272 CCACCGAAGCTGCGATGC 61.869 66.667 18.02 0.00 0.00 3.91
557 558 2.434884 ACCACCGAAGCTGCGATG 60.435 61.111 18.02 9.20 0.00 3.84
558 559 2.434884 CACCACCGAAGCTGCGAT 60.435 61.111 18.02 0.00 0.00 4.58
559 560 3.858868 GACACCACCGAAGCTGCGA 62.859 63.158 18.02 0.00 0.00 5.10
560 561 3.414700 GACACCACCGAAGCTGCG 61.415 66.667 7.28 7.28 0.00 5.18
561 562 3.050275 GGACACCACCGAAGCTGC 61.050 66.667 0.00 0.00 0.00 5.25
562 563 2.358737 GGGACACCACCGAAGCTG 60.359 66.667 0.00 0.00 36.50 4.24
563 564 2.847234 TGGGACACCACCGAAGCT 60.847 61.111 0.00 0.00 43.37 3.74
571 572 2.926901 CGACAACGGTTGGGACACCA 62.927 60.000 23.51 0.00 39.50 4.17
572 573 2.248835 CGACAACGGTTGGGACACC 61.249 63.158 23.51 5.88 34.75 4.16
573 574 2.888998 GCGACAACGGTTGGGACAC 61.889 63.158 23.51 9.25 37.94 3.67
574 575 2.589442 GCGACAACGGTTGGGACA 60.589 61.111 23.51 0.00 40.15 4.02
575 576 3.351416 GGCGACAACGGTTGGGAC 61.351 66.667 23.51 13.95 40.15 4.46
576 577 4.973055 CGGCGACAACGGTTGGGA 62.973 66.667 23.51 0.00 40.15 4.37
577 578 4.973055 TCGGCGACAACGGTTGGG 62.973 66.667 23.51 15.84 40.15 4.12
578 579 3.411351 CTCGGCGACAACGGTTGG 61.411 66.667 23.51 9.01 40.15 3.77
579 580 4.072088 GCTCGGCGACAACGGTTG 62.072 66.667 18.81 18.81 40.15 3.77
580 581 4.295119 AGCTCGGCGACAACGGTT 62.295 61.111 4.99 0.00 40.15 4.44
583 584 3.620300 TACCAGCTCGGCGACAACG 62.620 63.158 4.99 0.00 39.03 4.10
584 585 1.805945 CTACCAGCTCGGCGACAAC 60.806 63.158 4.99 0.00 39.03 3.32
585 586 1.812686 AACTACCAGCTCGGCGACAA 61.813 55.000 4.99 0.00 39.03 3.18
586 587 2.273179 AACTACCAGCTCGGCGACA 61.273 57.895 4.99 0.00 39.03 4.35
587 588 1.805945 CAACTACCAGCTCGGCGAC 60.806 63.158 4.99 3.12 39.03 5.19
588 589 2.273179 ACAACTACCAGCTCGGCGA 61.273 57.895 10.14 10.14 39.03 5.54
589 590 2.094659 CACAACTACCAGCTCGGCG 61.095 63.158 0.00 0.00 39.03 6.46
590 591 2.391389 GCACAACTACCAGCTCGGC 61.391 63.158 2.50 0.00 39.03 5.54
591 592 0.320771 AAGCACAACTACCAGCTCGG 60.321 55.000 1.16 1.16 36.07 4.63
592 593 0.792640 CAAGCACAACTACCAGCTCG 59.207 55.000 0.00 0.00 36.07 5.03
593 594 1.160137 CCAAGCACAACTACCAGCTC 58.840 55.000 0.00 0.00 36.07 4.09
594 595 0.764890 TCCAAGCACAACTACCAGCT 59.235 50.000 0.00 0.00 39.37 4.24
595 596 1.160137 CTCCAAGCACAACTACCAGC 58.840 55.000 0.00 0.00 0.00 4.85
596 597 1.160137 GCTCCAAGCACAACTACCAG 58.840 55.000 0.00 0.00 41.89 4.00
597 598 0.602638 CGCTCCAAGCACAACTACCA 60.603 55.000 0.00 0.00 42.58 3.25
598 599 1.912371 GCGCTCCAAGCACAACTACC 61.912 60.000 0.00 0.00 42.58 3.18
599 600 1.227999 TGCGCTCCAAGCACAACTAC 61.228 55.000 9.73 0.00 42.58 2.73
600 601 0.533978 TTGCGCTCCAAGCACAACTA 60.534 50.000 9.73 0.00 45.10 2.24
601 602 1.823470 TTGCGCTCCAAGCACAACT 60.823 52.632 9.73 0.00 45.10 3.16
602 603 2.721231 TTGCGCTCCAAGCACAAC 59.279 55.556 9.73 0.00 45.10 3.32
603 604 2.062361 CTGTTGCGCTCCAAGCACAA 62.062 55.000 9.73 0.00 45.10 3.33
604 605 2.515757 TGTTGCGCTCCAAGCACA 60.516 55.556 9.73 0.00 45.10 4.57
605 606 2.253452 CTGTTGCGCTCCAAGCAC 59.747 61.111 9.73 0.00 45.10 4.40
606 607 3.663176 GCTGTTGCGCTCCAAGCA 61.663 61.111 9.73 0.00 42.58 3.91
629 630 2.753043 GAGGCACCACCCATGCAG 60.753 66.667 0.00 0.00 45.27 4.41
630 631 3.259314 AGAGGCACCACCCATGCA 61.259 61.111 0.00 0.00 45.27 3.96
631 632 2.753043 CAGAGGCACCACCCATGC 60.753 66.667 0.00 0.00 42.62 4.06
632 633 1.075482 AACAGAGGCACCACCCATG 59.925 57.895 0.00 0.00 40.58 3.66
633 634 1.075482 CAACAGAGGCACCACCCAT 59.925 57.895 0.00 0.00 40.58 4.00
634 635 2.515398 CAACAGAGGCACCACCCA 59.485 61.111 0.00 0.00 40.58 4.51
635 636 2.985847 GCAACAGAGGCACCACCC 60.986 66.667 0.00 0.00 40.58 4.61
636 637 3.357079 CGCAACAGAGGCACCACC 61.357 66.667 0.00 0.00 39.61 4.61
637 638 2.591715 ACGCAACAGAGGCACCAC 60.592 61.111 0.00 0.00 0.00 4.16
638 639 2.591429 CACGCAACAGAGGCACCA 60.591 61.111 0.00 0.00 0.00 4.17
639 640 2.280797 TCACGCAACAGAGGCACC 60.281 61.111 0.00 0.00 0.00 5.01
640 641 1.287730 CTCTCACGCAACAGAGGCAC 61.288 60.000 0.00 0.00 33.69 5.01
641 642 1.005748 CTCTCACGCAACAGAGGCA 60.006 57.895 0.00 0.00 33.69 4.75
642 643 3.867771 CTCTCACGCAACAGAGGC 58.132 61.111 0.00 0.00 33.69 4.70
644 645 0.318441 TTCCCTCTCACGCAACAGAG 59.682 55.000 0.00 0.00 36.63 3.35
645 646 0.318441 CTTCCCTCTCACGCAACAGA 59.682 55.000 0.00 0.00 0.00 3.41
646 647 0.318441 TCTTCCCTCTCACGCAACAG 59.682 55.000 0.00 0.00 0.00 3.16
647 648 0.976641 ATCTTCCCTCTCACGCAACA 59.023 50.000 0.00 0.00 0.00 3.33
648 649 1.338200 ACATCTTCCCTCTCACGCAAC 60.338 52.381 0.00 0.00 0.00 4.17
649 650 0.976641 ACATCTTCCCTCTCACGCAA 59.023 50.000 0.00 0.00 0.00 4.85
650 651 0.976641 AACATCTTCCCTCTCACGCA 59.023 50.000 0.00 0.00 0.00 5.24
651 652 1.066858 TCAACATCTTCCCTCTCACGC 60.067 52.381 0.00 0.00 0.00 5.34
652 653 2.611518 GTCAACATCTTCCCTCTCACG 58.388 52.381 0.00 0.00 0.00 4.35
653 654 2.611518 CGTCAACATCTTCCCTCTCAC 58.388 52.381 0.00 0.00 0.00 3.51
654 655 1.550524 CCGTCAACATCTTCCCTCTCA 59.449 52.381 0.00 0.00 0.00 3.27
655 656 1.134670 CCCGTCAACATCTTCCCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
656 657 0.905357 CCCGTCAACATCTTCCCTCT 59.095 55.000 0.00 0.00 0.00 3.69
657 658 0.613777 ACCCGTCAACATCTTCCCTC 59.386 55.000 0.00 0.00 0.00 4.30
658 659 1.946984 TACCCGTCAACATCTTCCCT 58.053 50.000 0.00 0.00 0.00 4.20
659 660 2.773993 TTACCCGTCAACATCTTCCC 57.226 50.000 0.00 0.00 0.00 3.97
660 661 3.374058 CACATTACCCGTCAACATCTTCC 59.626 47.826 0.00 0.00 0.00 3.46
661 662 4.250464 TCACATTACCCGTCAACATCTTC 58.750 43.478 0.00 0.00 0.00 2.87
662 663 4.020573 TCTCACATTACCCGTCAACATCTT 60.021 41.667 0.00 0.00 0.00 2.40
663 664 3.513912 TCTCACATTACCCGTCAACATCT 59.486 43.478 0.00 0.00 0.00 2.90
664 665 3.617263 GTCTCACATTACCCGTCAACATC 59.383 47.826 0.00 0.00 0.00 3.06
665 666 3.596214 GTCTCACATTACCCGTCAACAT 58.404 45.455 0.00 0.00 0.00 2.71
666 667 2.289195 GGTCTCACATTACCCGTCAACA 60.289 50.000 0.00 0.00 0.00 3.33
667 668 2.289195 TGGTCTCACATTACCCGTCAAC 60.289 50.000 0.00 0.00 34.69 3.18
668 669 1.972075 TGGTCTCACATTACCCGTCAA 59.028 47.619 0.00 0.00 34.69 3.18
669 670 1.634960 TGGTCTCACATTACCCGTCA 58.365 50.000 0.00 0.00 34.69 4.35
670 671 2.618053 CTTGGTCTCACATTACCCGTC 58.382 52.381 0.00 0.00 34.69 4.79
671 672 1.338769 GCTTGGTCTCACATTACCCGT 60.339 52.381 0.00 0.00 34.69 5.28
672 673 1.369625 GCTTGGTCTCACATTACCCG 58.630 55.000 0.00 0.00 34.69 5.28
673 674 1.369625 CGCTTGGTCTCACATTACCC 58.630 55.000 0.00 0.00 34.69 3.69
674 675 1.066430 TCCGCTTGGTCTCACATTACC 60.066 52.381 0.00 0.00 36.24 2.85
675 676 2.000447 GTCCGCTTGGTCTCACATTAC 59.000 52.381 0.00 0.00 0.00 1.89
676 677 1.403647 CGTCCGCTTGGTCTCACATTA 60.404 52.381 0.00 0.00 0.00 1.90
677 678 0.670546 CGTCCGCTTGGTCTCACATT 60.671 55.000 0.00 0.00 0.00 2.71
678 679 1.079819 CGTCCGCTTGGTCTCACAT 60.080 57.895 0.00 0.00 0.00 3.21
679 680 2.338620 CGTCCGCTTGGTCTCACA 59.661 61.111 0.00 0.00 0.00 3.58
680 681 2.432628 CCGTCCGCTTGGTCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
681 682 4.373116 GCCGTCCGCTTGGTCTCA 62.373 66.667 0.00 0.00 0.00 3.27
690 691 2.954868 CACATCGTAGCCGTCCGC 60.955 66.667 0.00 0.00 35.01 5.54
691 692 2.954020 ATGCACATCGTAGCCGTCCG 62.954 60.000 0.00 0.00 35.01 4.79
692 693 1.227263 ATGCACATCGTAGCCGTCC 60.227 57.895 0.00 0.00 35.01 4.79
693 694 0.527600 TCATGCACATCGTAGCCGTC 60.528 55.000 0.00 0.00 35.01 4.79
694 695 0.104855 ATCATGCACATCGTAGCCGT 59.895 50.000 0.00 0.00 35.01 5.68
695 696 0.786581 GATCATGCACATCGTAGCCG 59.213 55.000 0.00 0.00 0.00 5.52
696 697 0.786581 CGATCATGCACATCGTAGCC 59.213 55.000 17.84 0.00 38.67 3.93
697 698 0.786581 CCGATCATGCACATCGTAGC 59.213 55.000 22.12 0.00 41.35 3.58
698 699 2.422276 TCCGATCATGCACATCGTAG 57.578 50.000 22.12 12.10 41.35 3.51
699 700 2.295909 TCATCCGATCATGCACATCGTA 59.704 45.455 22.12 11.86 41.35 3.43
700 701 1.069049 TCATCCGATCATGCACATCGT 59.931 47.619 22.12 7.77 41.35 3.73
701 702 1.787012 TCATCCGATCATGCACATCG 58.213 50.000 18.76 18.76 42.36 3.84
702 703 4.093998 GGTAATCATCCGATCATGCACATC 59.906 45.833 0.00 0.00 0.00 3.06
703 704 4.005650 GGTAATCATCCGATCATGCACAT 58.994 43.478 0.00 0.00 0.00 3.21
704 705 3.181456 TGGTAATCATCCGATCATGCACA 60.181 43.478 0.00 0.00 0.00 4.57
705 706 3.402110 TGGTAATCATCCGATCATGCAC 58.598 45.455 0.00 0.00 0.00 4.57
706 707 3.767902 TGGTAATCATCCGATCATGCA 57.232 42.857 0.00 0.00 0.00 3.96
707 708 4.153117 GTCTTGGTAATCATCCGATCATGC 59.847 45.833 0.00 0.00 0.00 4.06
708 709 4.386954 CGTCTTGGTAATCATCCGATCATG 59.613 45.833 0.00 0.00 0.00 3.07
709 710 4.560128 CGTCTTGGTAATCATCCGATCAT 58.440 43.478 0.00 0.00 0.00 2.45
710 711 3.243737 CCGTCTTGGTAATCATCCGATCA 60.244 47.826 0.00 0.00 0.00 2.92
711 712 3.318017 CCGTCTTGGTAATCATCCGATC 58.682 50.000 0.00 0.00 0.00 3.69
712 713 2.548067 GCCGTCTTGGTAATCATCCGAT 60.548 50.000 0.00 0.00 41.21 4.18
713 714 1.202486 GCCGTCTTGGTAATCATCCGA 60.202 52.381 0.00 0.00 41.21 4.55
714 715 1.202533 AGCCGTCTTGGTAATCATCCG 60.203 52.381 0.00 0.00 41.21 4.18
715 716 2.158957 TCAGCCGTCTTGGTAATCATCC 60.159 50.000 0.00 0.00 41.21 3.51
716 717 3.179443 TCAGCCGTCTTGGTAATCATC 57.821 47.619 0.00 0.00 41.21 2.92
717 718 3.845781 ATCAGCCGTCTTGGTAATCAT 57.154 42.857 0.00 0.00 41.21 2.45
718 719 4.161565 AGTTATCAGCCGTCTTGGTAATCA 59.838 41.667 0.00 0.00 41.21 2.57
719 720 4.694339 AGTTATCAGCCGTCTTGGTAATC 58.306 43.478 0.00 0.00 41.21 1.75
720 721 4.161565 TGAGTTATCAGCCGTCTTGGTAAT 59.838 41.667 0.00 0.00 41.21 1.89
721 722 3.512329 TGAGTTATCAGCCGTCTTGGTAA 59.488 43.478 0.00 0.00 41.21 2.85
722 723 3.093814 TGAGTTATCAGCCGTCTTGGTA 58.906 45.455 0.00 0.00 41.21 3.25
723 724 1.899814 TGAGTTATCAGCCGTCTTGGT 59.100 47.619 0.00 0.00 41.21 3.67
724 725 2.271800 GTGAGTTATCAGCCGTCTTGG 58.728 52.381 0.00 0.00 35.66 3.61
725 726 2.959516 TGTGAGTTATCAGCCGTCTTG 58.040 47.619 0.00 0.00 35.66 3.02
726 727 3.895232 ATGTGAGTTATCAGCCGTCTT 57.105 42.857 0.00 0.00 35.66 3.01
727 728 3.895232 AATGTGAGTTATCAGCCGTCT 57.105 42.857 0.00 0.00 35.66 4.18
728 729 5.753438 TGATAAATGTGAGTTATCAGCCGTC 59.247 40.000 3.08 0.00 41.05 4.79
729 730 5.670485 TGATAAATGTGAGTTATCAGCCGT 58.330 37.500 3.08 0.00 41.05 5.68
730 731 6.791887 ATGATAAATGTGAGTTATCAGCCG 57.208 37.500 10.98 0.00 46.06 5.52
731 732 7.293745 CGAATGATAAATGTGAGTTATCAGCC 58.706 38.462 10.98 5.79 46.06 4.85
732 733 7.293745 CCGAATGATAAATGTGAGTTATCAGC 58.706 38.462 10.98 6.19 46.06 4.26
733 734 7.172190 AGCCGAATGATAAATGTGAGTTATCAG 59.828 37.037 10.98 1.51 46.06 2.90
734 735 6.992123 AGCCGAATGATAAATGTGAGTTATCA 59.008 34.615 8.45 8.45 46.60 2.15
735 736 7.426929 AGCCGAATGATAAATGTGAGTTATC 57.573 36.000 0.00 0.00 38.11 1.75
736 737 7.807977 AAGCCGAATGATAAATGTGAGTTAT 57.192 32.000 0.00 0.00 0.00 1.89
737 738 7.042992 CGTAAGCCGAATGATAAATGTGAGTTA 60.043 37.037 0.00 0.00 39.56 2.24
738 739 6.238103 CGTAAGCCGAATGATAAATGTGAGTT 60.238 38.462 0.00 0.00 39.56 3.01
739 740 5.234329 CGTAAGCCGAATGATAAATGTGAGT 59.766 40.000 0.00 0.00 39.56 3.41
740 741 5.670097 CGTAAGCCGAATGATAAATGTGAG 58.330 41.667 0.00 0.00 39.56 3.51
741 742 5.651172 CGTAAGCCGAATGATAAATGTGA 57.349 39.130 0.00 0.00 39.56 3.58
758 759 1.664965 GGCGGATGCTAGGCGTAAG 60.665 63.158 0.00 0.00 42.25 2.34
759 760 1.754380 ATGGCGGATGCTAGGCGTAA 61.754 55.000 0.00 0.00 42.25 3.18
760 761 0.896479 TATGGCGGATGCTAGGCGTA 60.896 55.000 0.00 0.00 42.25 4.42
761 762 1.544825 ATATGGCGGATGCTAGGCGT 61.545 55.000 0.00 0.00 42.25 5.68
762 763 0.459899 TATATGGCGGATGCTAGGCG 59.540 55.000 0.00 0.00 42.25 5.52
763 764 2.093447 AGTTATATGGCGGATGCTAGGC 60.093 50.000 0.00 0.00 42.25 3.93
764 765 3.055819 ACAGTTATATGGCGGATGCTAGG 60.056 47.826 0.00 0.00 42.25 3.02
765 766 3.928992 CACAGTTATATGGCGGATGCTAG 59.071 47.826 0.00 0.00 42.25 3.42
766 767 3.306710 CCACAGTTATATGGCGGATGCTA 60.307 47.826 0.00 0.00 42.25 3.49
767 768 2.550855 CCACAGTTATATGGCGGATGCT 60.551 50.000 0.00 0.00 42.25 3.79
768 769 1.806542 CCACAGTTATATGGCGGATGC 59.193 52.381 0.00 0.00 41.71 3.91
775 776 2.498167 GCTGGAGCCACAGTTATATGG 58.502 52.381 7.05 0.00 40.59 2.74
1008 1018 0.103026 TCATCTCGATGTTGGGAGCG 59.897 55.000 6.78 0.00 39.72 5.03
1367 1402 6.365518 GCCTCAAAACTACTAAGTACAGACAC 59.634 42.308 0.00 0.00 33.75 3.67
1370 1405 5.046807 GGGCCTCAAAACTACTAAGTACAGA 60.047 44.000 0.84 0.00 33.75 3.41
1567 1602 8.408601 CAAGGAGACGGATCAAATAATCAAAAT 58.591 33.333 0.00 0.00 0.00 1.82
1776 1811 5.662674 TCTAGCTTTACAAAGAGAGGGAC 57.337 43.478 5.89 0.00 38.28 4.46
1846 1881 5.191722 AGGGCAATAAAGATCCTCACAACTA 59.808 40.000 0.00 0.00 0.00 2.24
1868 1903 7.758820 TCTATCCTAGTTCCTCTATCCTAGG 57.241 44.000 0.82 0.82 45.23 3.02
1869 1904 7.719633 GCATCTATCCTAGTTCCTCTATCCTAG 59.280 44.444 0.00 0.00 0.00 3.02
1870 1905 7.367004 GGCATCTATCCTAGTTCCTCTATCCTA 60.367 44.444 0.00 0.00 0.00 2.94
1871 1906 6.431722 GCATCTATCCTAGTTCCTCTATCCT 58.568 44.000 0.00 0.00 0.00 3.24
1872 1907 5.596772 GGCATCTATCCTAGTTCCTCTATCC 59.403 48.000 0.00 0.00 0.00 2.59
1873 1908 6.096282 GTGGCATCTATCCTAGTTCCTCTATC 59.904 46.154 0.00 0.00 0.00 2.08
1874 1909 5.955355 GTGGCATCTATCCTAGTTCCTCTAT 59.045 44.000 0.00 0.00 0.00 1.98
1875 1910 5.326069 GTGGCATCTATCCTAGTTCCTCTA 58.674 45.833 0.00 0.00 0.00 2.43
1876 1911 4.156477 GTGGCATCTATCCTAGTTCCTCT 58.844 47.826 0.00 0.00 0.00 3.69
1877 1912 3.259625 GGTGGCATCTATCCTAGTTCCTC 59.740 52.174 0.00 0.00 0.00 3.71
1878 1913 3.243724 GGTGGCATCTATCCTAGTTCCT 58.756 50.000 0.00 0.00 0.00 3.36
1879 1914 2.303311 GGGTGGCATCTATCCTAGTTCC 59.697 54.545 0.00 0.00 0.00 3.62
1880 1915 3.007398 CAGGGTGGCATCTATCCTAGTTC 59.993 52.174 0.00 0.00 0.00 3.01
1881 1916 2.975489 CAGGGTGGCATCTATCCTAGTT 59.025 50.000 0.00 0.00 0.00 2.24
1882 1917 2.614259 CAGGGTGGCATCTATCCTAGT 58.386 52.381 0.00 0.00 0.00 2.57
1942 2044 0.175760 TCAGGCTACATCGCACCTTC 59.824 55.000 0.00 0.00 0.00 3.46
1999 2172 5.659440 AATGAGAAAACCCGCAACATATT 57.341 34.783 0.00 0.00 0.00 1.28
2000 2173 5.659440 AAATGAGAAAACCCGCAACATAT 57.341 34.783 0.00 0.00 0.00 1.78
2292 2494 4.400251 AGATAGGCCATGAACACAATGTTG 59.600 41.667 5.01 0.00 41.28 3.33
2403 2608 5.344884 GTGTTGAGAAAAATCGTGGGAAAA 58.655 37.500 0.00 0.00 0.00 2.29
2404 2609 4.202070 GGTGTTGAGAAAAATCGTGGGAAA 60.202 41.667 0.00 0.00 0.00 3.13
2405 2610 3.316868 GGTGTTGAGAAAAATCGTGGGAA 59.683 43.478 0.00 0.00 0.00 3.97
2406 2611 2.882137 GGTGTTGAGAAAAATCGTGGGA 59.118 45.455 0.00 0.00 0.00 4.37
2407 2612 2.884639 AGGTGTTGAGAAAAATCGTGGG 59.115 45.455 0.00 0.00 0.00 4.61
2717 2987 2.691771 GCTGCTCTCCTCGTCGTCA 61.692 63.158 0.00 0.00 0.00 4.35
3019 3298 0.613572 TCGGTAGTCCATGACAGCCA 60.614 55.000 0.00 0.00 34.60 4.75
3020 3299 0.535335 TTCGGTAGTCCATGACAGCC 59.465 55.000 0.00 0.00 34.60 4.85
3021 3300 1.476891 TCTTCGGTAGTCCATGACAGC 59.523 52.381 0.00 0.00 34.60 4.40
3023 3302 2.492088 CTGTCTTCGGTAGTCCATGACA 59.508 50.000 0.00 0.00 34.60 3.58
3025 3304 2.100197 CCTGTCTTCGGTAGTCCATGA 58.900 52.381 0.00 0.00 0.00 3.07
3026 3305 1.137086 CCCTGTCTTCGGTAGTCCATG 59.863 57.143 0.00 0.00 0.00 3.66
3045 3324 1.235281 GGACCTCCTCGCACAAAACC 61.235 60.000 0.00 0.00 0.00 3.27
3234 3542 2.863132 TGCTAACCCAACAACGGTAT 57.137 45.000 0.00 0.00 31.69 2.73
3297 3764 3.705604 ACTACAAACTTTGTGTGCATGC 58.294 40.909 11.82 11.82 45.03 4.06
3367 3835 0.946528 TGCGTGCATTCATAGGATGC 59.053 50.000 3.32 3.32 39.44 3.91
3368 3836 1.941975 TGTGCGTGCATTCATAGGATG 59.058 47.619 0.00 0.00 0.00 3.51
3370 3838 1.368641 GTGTGCGTGCATTCATAGGA 58.631 50.000 0.00 0.00 0.00 2.94
3372 3840 0.378257 GGGTGTGCGTGCATTCATAG 59.622 55.000 0.00 0.00 0.00 2.23
3373 3841 0.035534 AGGGTGTGCGTGCATTCATA 60.036 50.000 0.00 0.00 0.00 2.15
3375 3843 0.035534 ATAGGGTGTGCGTGCATTCA 60.036 50.000 0.00 0.00 0.00 2.57
3376 3844 0.657840 GATAGGGTGTGCGTGCATTC 59.342 55.000 0.00 0.00 0.00 2.67
3387 3855 2.041081 TGGTGTTCAAAGGGATAGGGTG 59.959 50.000 0.00 0.00 0.00 4.61
3408 3876 1.880675 ACGCCGACTCAATATCTCGAT 59.119 47.619 0.00 0.00 0.00 3.59
3409 3877 1.306148 ACGCCGACTCAATATCTCGA 58.694 50.000 0.00 0.00 0.00 4.04
3439 3907 3.671716 ACTTGGGGTGACTTCGTTAATC 58.328 45.455 0.00 0.00 0.00 1.75
3475 3943 0.246635 AATGTGAGGGGACGTTCTCG 59.753 55.000 0.00 0.00 43.34 4.04
3523 3991 5.054477 GCCGGTAGTGCTCATATTTTTCTA 58.946 41.667 1.90 0.00 0.00 2.10
3554 4022 0.601841 ACCTACCAAGTTTCACGCCG 60.602 55.000 0.00 0.00 0.00 6.46
3556 4024 1.265905 CCAACCTACCAAGTTTCACGC 59.734 52.381 0.00 0.00 0.00 5.34
3558 4026 4.399934 TGAAACCAACCTACCAAGTTTCAC 59.600 41.667 11.42 0.00 46.74 3.18
3563 4031 3.697542 GTGTTGAAACCAACCTACCAAGT 59.302 43.478 5.93 0.00 42.35 3.16
3579 4047 9.219603 CTCAGATAATTAGGTTTCTTGTGTTGA 57.780 33.333 0.00 0.00 0.00 3.18
3580 4048 7.965107 GCTCAGATAATTAGGTTTCTTGTGTTG 59.035 37.037 0.00 0.00 0.00 3.33
3631 4099 2.738846 CACTGCACCAACTAGCAACTAG 59.261 50.000 0.08 0.08 40.73 2.57
3635 4103 0.179020 AGCACTGCACCAACTAGCAA 60.179 50.000 3.30 0.00 40.73 3.91
3637 4105 1.464997 GTAAGCACTGCACCAACTAGC 59.535 52.381 3.30 0.00 0.00 3.42
3752 4220 0.827368 GTCGCCAGAATCTCCCTTCT 59.173 55.000 0.00 0.00 35.88 2.85
3775 4243 2.044123 AGACTTCGATCCATTTGGGC 57.956 50.000 0.00 0.00 36.21 5.36
3813 4281 1.303309 GCTAGCAAGCCGATTCATGT 58.697 50.000 10.63 0.00 43.40 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.