Multiple sequence alignment - TraesCS6D01G177700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G177700 chr6D 100.000 3049 0 0 1634 4682 179947121 179950169 0.000000e+00 5631
1 TraesCS6D01G177700 chr6D 100.000 1144 0 0 1 1144 179945488 179946631 0.000000e+00 2113
2 TraesCS6D01G177700 chr6D 96.452 310 11 0 3987 4296 28048900 28048591 3.230000e-141 512
3 TraesCS6D01G177700 chr6A 98.262 3049 52 1 1634 4681 235916944 235919992 0.000000e+00 5336
4 TraesCS6D01G177700 chr6A 97.125 313 9 0 3983 4295 588602119 588602431 3.210000e-146 529
5 TraesCS6D01G177700 chr6A 93.676 253 15 1 1 252 235915497 235915749 1.230000e-100 377
6 TraesCS6D01G177700 chr6A 94.894 235 7 4 682 912 235916307 235916540 3.440000e-96 363
7 TraesCS6D01G177700 chr6B 98.496 2726 36 3 1634 4358 293108996 293106275 0.000000e+00 4802
8 TraesCS6D01G177700 chr6B 98.795 332 4 0 4351 4682 293104981 293104650 4.030000e-165 592
9 TraesCS6D01G177700 chr6B 93.676 253 13 2 1 252 293109981 293109731 4.420000e-100 375
10 TraesCS6D01G177700 chr6B 93.836 146 9 0 755 900 293109588 293109443 2.190000e-53 220
11 TraesCS6D01G177700 chr6B 94.017 117 3 4 650 763 293109735 293109620 1.730000e-39 174
12 TraesCS6D01G177700 chr5A 91.127 417 34 3 234 648 570173358 570172943 3.160000e-156 562
13 TraesCS6D01G177700 chr5A 91.729 399 29 4 249 645 94758913 94758517 6.850000e-153 551
14 TraesCS6D01G177700 chr5A 96.190 315 11 1 3982 4295 549204331 549204645 8.980000e-142 514
15 TraesCS6D01G177700 chr1A 92.366 393 29 1 254 645 581867095 581866703 4.090000e-155 558
16 TraesCS6D01G177700 chr1A 96.795 312 10 0 3984 4295 420381404 420381093 5.370000e-144 521
17 TraesCS6D01G177700 chr7A 91.858 393 30 2 254 644 579566145 579565753 8.860000e-152 547
18 TraesCS6D01G177700 chr7A 91.414 396 30 4 252 645 418107786 418107393 1.480000e-149 540
19 TraesCS6D01G177700 chr7A 91.162 396 33 2 254 647 57206016 57206411 1.920000e-148 536
20 TraesCS6D01G177700 chr5B 91.878 394 28 4 254 645 34896308 34896699 8.860000e-152 547
21 TraesCS6D01G177700 chr3A 91.436 397 30 4 254 648 141884517 141884123 4.120000e-150 542
22 TraesCS6D01G177700 chr3A 94.880 332 15 2 3985 4315 395477926 395477596 6.940000e-143 518
23 TraesCS6D01G177700 chr4B 91.371 394 31 3 254 646 302741079 302741470 1.920000e-148 536
24 TraesCS6D01G177700 chr2D 96.273 322 9 2 3980 4298 213697311 213696990 4.150000e-145 525
25 TraesCS6D01G177700 chr7D 96.785 311 10 0 3987 4297 539382079 539381769 1.930000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G177700 chr6D 179945488 179950169 4681 False 3872.000000 5631 100.000000 1 4682 2 chr6D.!!$F1 4681
1 TraesCS6D01G177700 chr6A 235915497 235919992 4495 False 2025.333333 5336 95.610667 1 4681 3 chr6A.!!$F2 4680
2 TraesCS6D01G177700 chr6B 293104650 293109981 5331 True 1232.600000 4802 95.764000 1 4682 5 chr6B.!!$R1 4681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 283 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.000 31.73 20.35 36.62 4.40 F
1061 1634 0.105607 AACCCCCGCAAAAACCCTAA 60.106 50.000 0.00 0.00 0.00 2.69 F
1062 1635 0.105607 ACCCCCGCAAAAACCCTAAA 60.106 50.000 0.00 0.00 0.00 1.85 F
1073 1646 0.197661 AACCCTAAACCCCCTCCTGA 59.802 55.000 0.00 0.00 0.00 3.86 F
1074 1647 0.197661 ACCCTAAACCCCCTCCTGAA 59.802 55.000 0.00 0.00 0.00 3.02 F
1077 1650 0.256177 CTAAACCCCCTCCTGAAGGC 59.744 60.000 0.00 0.00 44.71 4.35 F
1078 1651 1.212250 TAAACCCCCTCCTGAAGGCC 61.212 60.000 0.00 0.00 44.71 5.19 F
1085 1658 2.042261 TCCTGAAGGCCCTACCCC 59.958 66.667 0.00 0.00 40.58 4.95 F
2785 3526 2.304761 ACTCCAAGTCAAGGCCGATAAA 59.695 45.455 0.00 0.00 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1667 0.400670 GCTAGGTTCTGGAGGGGGAT 60.401 60.000 0.00 0.00 0.00 3.85 R
2669 3410 2.053865 CGGCAAAGGTGGGCATGAT 61.054 57.895 0.00 0.00 0.00 2.45 R
2785 3526 3.006967 GCGGACACTAATGGGAGTATGAT 59.993 47.826 0.00 0.00 0.00 2.45 R
2828 3569 6.256053 TCTTTTATCCAGATCCTTTGCCTTT 58.744 36.000 0.00 0.00 0.00 3.11 R
3251 3992 5.544650 AGCTTTGGAGATTTTTCACCAATG 58.455 37.500 5.85 8.89 39.43 2.82 R
3288 4030 2.374504 AGGATGAATGAATCAGGGCGAT 59.625 45.455 0.00 0.00 42.53 4.58 R
3347 4089 7.509141 TCAAATCTGTGCATAAGAAAAGTCA 57.491 32.000 6.20 0.00 0.00 3.41 R
3423 4165 2.730934 AGATCTACTGGCACTCGGTA 57.269 50.000 0.00 0.00 36.22 4.02 R
3974 4716 2.266279 AGGAGGCCTAAGTTGCTGTTA 58.734 47.619 4.42 0.00 28.47 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 6.179906 AGAGATTCAACCACTTCTCTCAAA 57.820 37.500 0.00 0.00 40.65 2.69
119 121 4.078639 GCTCATAGGTGTGCTTAGGAAT 57.921 45.455 0.00 0.00 40.68 3.01
164 166 8.230486 GTGTAACCTCTTTTCATGTATGAGTTG 58.770 37.037 0.00 0.00 38.19 3.16
232 234 8.356657 TGAATAAAATGTCTTGAATGACGGTTT 58.643 29.630 0.00 0.00 39.64 3.27
233 235 9.834628 GAATAAAATGTCTTGAATGACGGTTTA 57.165 29.630 0.00 0.00 39.64 2.01
258 260 5.428184 AAAAAGACTGGGATACTGAGAGG 57.572 43.478 0.00 0.00 0.00 3.69
259 261 2.765689 AGACTGGGATACTGAGAGGG 57.234 55.000 0.00 0.00 0.00 4.30
260 262 1.044611 GACTGGGATACTGAGAGGGC 58.955 60.000 0.00 0.00 0.00 5.19
261 263 0.339859 ACTGGGATACTGAGAGGGCA 59.660 55.000 0.00 0.00 0.00 5.36
262 264 0.755686 CTGGGATACTGAGAGGGCAC 59.244 60.000 0.00 0.00 0.00 5.01
276 278 2.496942 GGCACCATCTGAACCCATG 58.503 57.895 0.00 0.00 0.00 3.66
277 279 1.039233 GGCACCATCTGAACCCATGG 61.039 60.000 4.14 4.14 44.68 3.66
278 280 1.039233 GCACCATCTGAACCCATGGG 61.039 60.000 30.23 30.23 43.59 4.00
279 281 1.039233 CACCATCTGAACCCATGGGC 61.039 60.000 31.73 16.20 43.59 5.36
280 282 1.307309 CCATCTGAACCCATGGGCA 59.693 57.895 31.73 20.09 36.62 5.36
281 283 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.000 31.73 20.35 36.62 4.40
282 284 1.145531 CCATCTGAACCCATGGGCATA 59.854 52.381 31.73 14.38 36.62 3.14
283 285 2.225192 CCATCTGAACCCATGGGCATAT 60.225 50.000 31.73 16.01 36.62 1.78
284 286 2.662535 TCTGAACCCATGGGCATATG 57.337 50.000 31.73 16.78 39.32 1.78
285 287 0.963962 CTGAACCCATGGGCATATGC 59.036 55.000 31.73 19.79 39.32 3.14
286 288 0.261109 TGAACCCATGGGCATATGCA 59.739 50.000 31.73 13.55 44.36 3.96
287 289 0.675633 GAACCCATGGGCATATGCAC 59.324 55.000 31.73 25.88 46.69 4.57
288 290 0.760189 AACCCATGGGCATATGCACC 60.760 55.000 31.73 23.82 45.73 5.01
289 291 1.909781 CCCATGGGCATATGCACCC 60.910 63.158 26.74 19.95 45.73 4.61
296 298 2.837498 GGGCATATGCACCCATTTTTC 58.163 47.619 28.07 7.31 46.22 2.29
297 299 2.170187 GGGCATATGCACCCATTTTTCA 59.830 45.455 28.07 0.00 46.22 2.69
298 300 3.370315 GGGCATATGCACCCATTTTTCAA 60.370 43.478 28.07 0.00 46.22 2.69
299 301 4.260170 GGCATATGCACCCATTTTTCAAA 58.740 39.130 28.07 0.00 44.36 2.69
300 302 4.699257 GGCATATGCACCCATTTTTCAAAA 59.301 37.500 28.07 0.00 44.36 2.44
301 303 5.182760 GGCATATGCACCCATTTTTCAAAAA 59.817 36.000 28.07 0.00 44.36 1.94
302 304 6.127675 GGCATATGCACCCATTTTTCAAAAAT 60.128 34.615 28.07 1.98 44.36 1.82
303 305 6.748198 GCATATGCACCCATTTTTCAAAAATG 59.252 34.615 23.54 23.54 41.59 2.32
304 306 7.575343 GCATATGCACCCATTTTTCAAAAATGT 60.575 33.333 26.63 14.22 41.59 2.71
305 307 8.944029 CATATGCACCCATTTTTCAAAAATGTA 58.056 29.630 26.63 15.57 36.24 2.29
306 308 7.999450 ATGCACCCATTTTTCAAAAATGTAT 57.001 28.000 26.63 15.58 36.24 2.29
307 309 7.814264 TGCACCCATTTTTCAAAAATGTATT 57.186 28.000 26.63 12.66 36.24 1.89
308 310 8.230472 TGCACCCATTTTTCAAAAATGTATTT 57.770 26.923 26.63 10.69 36.24 1.40
309 311 8.689972 TGCACCCATTTTTCAAAAATGTATTTT 58.310 25.926 26.63 9.29 41.40 1.82
363 365 9.638239 AAAAAGAAAATATCACGCATACATGTT 57.362 25.926 2.30 0.00 0.00 2.71
364 366 8.841444 AAAGAAAATATCACGCATACATGTTC 57.159 30.769 2.30 0.00 0.00 3.18
365 367 6.649436 AGAAAATATCACGCATACATGTTCG 58.351 36.000 2.30 8.45 0.00 3.95
366 368 4.389664 AATATCACGCATACATGTTCGC 57.610 40.909 2.30 6.37 0.00 4.70
367 369 1.650825 ATCACGCATACATGTTCGCA 58.349 45.000 2.30 0.00 0.00 5.10
368 370 1.433534 TCACGCATACATGTTCGCAA 58.566 45.000 2.30 0.00 0.00 4.85
369 371 1.801178 TCACGCATACATGTTCGCAAA 59.199 42.857 2.30 0.00 0.00 3.68
370 372 2.418280 TCACGCATACATGTTCGCAAAT 59.582 40.909 2.30 0.00 0.00 2.32
371 373 2.527087 CACGCATACATGTTCGCAAATG 59.473 45.455 2.30 1.18 0.00 2.32
372 374 2.161410 ACGCATACATGTTCGCAAATGT 59.839 40.909 2.30 0.00 40.13 2.71
373 375 2.777845 CGCATACATGTTCGCAAATGTC 59.222 45.455 2.30 0.00 38.05 3.06
374 376 3.485711 CGCATACATGTTCGCAAATGTCT 60.486 43.478 2.30 0.00 38.05 3.41
375 377 3.787634 GCATACATGTTCGCAAATGTCTG 59.212 43.478 2.30 0.00 38.05 3.51
376 378 4.672542 GCATACATGTTCGCAAATGTCTGT 60.673 41.667 2.30 0.00 38.05 3.41
377 379 5.447144 GCATACATGTTCGCAAATGTCTGTA 60.447 40.000 2.30 0.00 38.05 2.74
378 380 4.404507 ACATGTTCGCAAATGTCTGTAC 57.595 40.909 0.00 0.00 31.33 2.90
379 381 3.120683 ACATGTTCGCAAATGTCTGTACG 60.121 43.478 0.00 0.00 31.33 3.67
380 382 2.475818 TGTTCGCAAATGTCTGTACGT 58.524 42.857 0.00 0.00 0.00 3.57
381 383 2.219903 TGTTCGCAAATGTCTGTACGTG 59.780 45.455 0.00 0.00 0.00 4.49
382 384 1.424403 TCGCAAATGTCTGTACGTGG 58.576 50.000 0.00 0.00 0.00 4.94
383 385 0.179225 CGCAAATGTCTGTACGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
384 386 0.871722 GCAAATGTCTGTACGTGGCA 59.128 50.000 0.00 0.00 0.00 4.92
385 387 1.399727 GCAAATGTCTGTACGTGGCAC 60.400 52.381 7.79 7.79 0.00 5.01
386 388 1.870402 CAAATGTCTGTACGTGGCACA 59.130 47.619 19.09 0.00 0.00 4.57
387 389 2.248280 AATGTCTGTACGTGGCACAA 57.752 45.000 19.09 1.50 44.16 3.33
388 390 2.248280 ATGTCTGTACGTGGCACAAA 57.752 45.000 19.09 1.08 44.16 2.83
389 391 1.577468 TGTCTGTACGTGGCACAAAG 58.423 50.000 19.09 8.79 44.16 2.77
390 392 1.134640 TGTCTGTACGTGGCACAAAGT 60.135 47.619 19.09 10.07 44.16 2.66
391 393 1.937899 GTCTGTACGTGGCACAAAGTT 59.062 47.619 19.09 0.00 44.16 2.66
392 394 2.353579 GTCTGTACGTGGCACAAAGTTT 59.646 45.455 19.09 0.00 44.16 2.66
393 395 3.011119 TCTGTACGTGGCACAAAGTTTT 58.989 40.909 19.09 0.00 44.16 2.43
394 396 4.034279 GTCTGTACGTGGCACAAAGTTTTA 59.966 41.667 19.09 0.00 44.16 1.52
395 397 4.817464 TCTGTACGTGGCACAAAGTTTTAT 59.183 37.500 19.09 0.00 44.16 1.40
396 398 4.849883 TGTACGTGGCACAAAGTTTTATG 58.150 39.130 19.09 0.00 44.16 1.90
397 399 4.575236 TGTACGTGGCACAAAGTTTTATGA 59.425 37.500 19.09 0.00 44.16 2.15
398 400 4.640789 ACGTGGCACAAAGTTTTATGAA 57.359 36.364 19.09 0.00 44.16 2.57
399 401 5.000012 ACGTGGCACAAAGTTTTATGAAA 58.000 34.783 19.09 0.00 44.16 2.69
400 402 5.411781 ACGTGGCACAAAGTTTTATGAAAA 58.588 33.333 19.09 0.00 44.16 2.29
401 403 5.869888 ACGTGGCACAAAGTTTTATGAAAAA 59.130 32.000 19.09 0.00 44.16 1.94
422 424 7.686438 AAAAATGTCTTTTTGTTTTGCCTCT 57.314 28.000 0.00 0.00 41.77 3.69
423 425 6.667007 AAATGTCTTTTTGTTTTGCCTCTG 57.333 33.333 0.00 0.00 0.00 3.35
424 426 4.799564 TGTCTTTTTGTTTTGCCTCTGT 57.200 36.364 0.00 0.00 0.00 3.41
425 427 5.906113 TGTCTTTTTGTTTTGCCTCTGTA 57.094 34.783 0.00 0.00 0.00 2.74
426 428 6.274157 TGTCTTTTTGTTTTGCCTCTGTAA 57.726 33.333 0.00 0.00 0.00 2.41
427 429 6.692486 TGTCTTTTTGTTTTGCCTCTGTAAA 58.308 32.000 0.00 0.00 0.00 2.01
428 430 7.155328 TGTCTTTTTGTTTTGCCTCTGTAAAA 58.845 30.769 0.00 0.00 34.29 1.52
429 431 7.657761 TGTCTTTTTGTTTTGCCTCTGTAAAAA 59.342 29.630 0.00 0.00 37.72 1.94
462 464 8.911918 TTTTAGTGCTTCTAAATAGTGTTCCA 57.088 30.769 12.70 0.00 44.72 3.53
463 465 7.900782 TTAGTGCTTCTAAATAGTGTTCCAC 57.099 36.000 0.77 0.00 35.92 4.02
464 466 4.929808 AGTGCTTCTAAATAGTGTTCCACG 59.070 41.667 0.00 0.00 39.64 4.94
465 467 4.927425 GTGCTTCTAAATAGTGTTCCACGA 59.073 41.667 0.00 0.00 39.64 4.35
466 468 4.927425 TGCTTCTAAATAGTGTTCCACGAC 59.073 41.667 0.00 0.00 39.64 4.34
467 469 4.927425 GCTTCTAAATAGTGTTCCACGACA 59.073 41.667 0.00 0.00 39.64 4.35
468 470 5.581085 GCTTCTAAATAGTGTTCCACGACAT 59.419 40.000 0.00 0.00 39.64 3.06
469 471 6.755141 GCTTCTAAATAGTGTTCCACGACATA 59.245 38.462 0.00 0.00 39.64 2.29
470 472 7.277098 GCTTCTAAATAGTGTTCCACGACATAA 59.723 37.037 0.00 0.00 39.64 1.90
471 473 9.314321 CTTCTAAATAGTGTTCCACGACATAAT 57.686 33.333 0.00 0.00 39.64 1.28
472 474 9.661563 TTCTAAATAGTGTTCCACGACATAATT 57.338 29.630 0.00 0.00 39.64 1.40
473 475 9.661563 TCTAAATAGTGTTCCACGACATAATTT 57.338 29.630 0.00 0.00 39.64 1.82
501 503 3.827008 TTTTTGCACAGGCCACAATAA 57.173 38.095 5.01 2.69 40.13 1.40
502 504 3.827008 TTTTGCACAGGCCACAATAAA 57.173 38.095 5.01 0.00 40.13 1.40
503 505 3.827008 TTTGCACAGGCCACAATAAAA 57.173 38.095 5.01 0.00 40.13 1.52
504 506 3.383620 TTGCACAGGCCACAATAAAAG 57.616 42.857 5.01 0.00 40.13 2.27
505 507 2.315176 TGCACAGGCCACAATAAAAGT 58.685 42.857 5.01 0.00 40.13 2.66
506 508 2.697751 TGCACAGGCCACAATAAAAGTT 59.302 40.909 5.01 0.00 40.13 2.66
507 509 3.891977 TGCACAGGCCACAATAAAAGTTA 59.108 39.130 5.01 0.00 40.13 2.24
508 510 4.526262 TGCACAGGCCACAATAAAAGTTAT 59.474 37.500 5.01 0.00 40.13 1.89
509 511 5.011533 TGCACAGGCCACAATAAAAGTTATT 59.988 36.000 5.01 0.00 40.13 1.40
510 512 5.931724 GCACAGGCCACAATAAAAGTTATTT 59.068 36.000 5.01 0.00 0.00 1.40
511 513 6.426633 GCACAGGCCACAATAAAAGTTATTTT 59.573 34.615 5.01 0.00 41.48 1.82
512 514 7.041440 GCACAGGCCACAATAAAAGTTATTTTT 60.041 33.333 5.01 0.00 41.68 1.94
513 515 8.495148 CACAGGCCACAATAAAAGTTATTTTTC 58.505 33.333 5.01 0.00 39.61 2.29
514 516 7.659799 ACAGGCCACAATAAAAGTTATTTTTCC 59.340 33.333 5.01 0.00 39.61 3.13
515 517 6.871492 AGGCCACAATAAAAGTTATTTTTCCG 59.129 34.615 5.01 0.00 39.61 4.30
516 518 6.647481 GGCCACAATAAAAGTTATTTTTCCGT 59.353 34.615 0.00 0.00 39.61 4.69
517 519 7.359681 GGCCACAATAAAAGTTATTTTTCCGTG 60.360 37.037 0.00 0.00 39.61 4.94
518 520 7.382759 GCCACAATAAAAGTTATTTTTCCGTGA 59.617 33.333 9.27 0.00 39.61 4.35
519 521 9.250624 CCACAATAAAAGTTATTTTTCCGTGAA 57.749 29.630 9.27 0.00 39.61 3.18
528 530 8.515473 AGTTATTTTTCCGTGAAACTTTATGC 57.485 30.769 0.00 0.00 30.83 3.14
529 531 8.138712 AGTTATTTTTCCGTGAAACTTTATGCA 58.861 29.630 0.00 0.00 30.83 3.96
530 532 8.921670 GTTATTTTTCCGTGAAACTTTATGCAT 58.078 29.630 3.79 3.79 30.83 3.96
531 533 6.761731 TTTTTCCGTGAAACTTTATGCATG 57.238 33.333 10.16 0.00 30.83 4.06
532 534 3.485947 TCCGTGAAACTTTATGCATGC 57.514 42.857 11.82 11.82 31.75 4.06
533 535 2.816672 TCCGTGAAACTTTATGCATGCA 59.183 40.909 25.04 25.04 31.75 3.96
534 536 2.916716 CCGTGAAACTTTATGCATGCAC 59.083 45.455 25.37 8.21 31.75 4.57
535 537 3.563508 CGTGAAACTTTATGCATGCACA 58.436 40.909 25.37 9.23 31.75 4.57
536 538 4.168014 CGTGAAACTTTATGCATGCACAT 58.832 39.130 25.37 11.24 31.75 3.21
537 539 5.331098 CGTGAAACTTTATGCATGCACATA 58.669 37.500 25.37 10.03 31.75 2.29
538 540 5.453266 CGTGAAACTTTATGCATGCACATAG 59.547 40.000 25.37 18.85 31.82 2.23
539 541 6.554419 GTGAAACTTTATGCATGCACATAGA 58.446 36.000 25.37 6.96 34.15 1.98
540 542 7.028962 GTGAAACTTTATGCATGCACATAGAA 58.971 34.615 25.37 12.04 34.15 2.10
541 543 7.008628 GTGAAACTTTATGCATGCACATAGAAC 59.991 37.037 25.37 12.57 34.15 3.01
542 544 6.513806 AACTTTATGCATGCACATAGAACA 57.486 33.333 25.37 0.00 34.15 3.18
543 545 6.704289 ACTTTATGCATGCACATAGAACAT 57.296 33.333 25.37 6.17 34.15 2.71
544 546 6.500910 ACTTTATGCATGCACATAGAACATG 58.499 36.000 25.37 7.50 43.21 3.21
545 547 5.441709 TTATGCATGCACATAGAACATGG 57.558 39.130 25.37 0.00 41.17 3.66
546 548 2.025898 TGCATGCACATAGAACATGGG 58.974 47.619 18.46 0.00 41.17 4.00
547 549 1.338973 GCATGCACATAGAACATGGGG 59.661 52.381 14.21 0.00 41.17 4.96
548 550 2.934887 CATGCACATAGAACATGGGGA 58.065 47.619 0.00 0.00 37.99 4.81
549 551 2.418368 TGCACATAGAACATGGGGAC 57.582 50.000 0.00 0.00 0.00 4.46
550 552 1.299541 GCACATAGAACATGGGGACG 58.700 55.000 0.00 0.00 0.00 4.79
551 553 1.406887 GCACATAGAACATGGGGACGT 60.407 52.381 0.00 0.00 0.00 4.34
552 554 2.159014 GCACATAGAACATGGGGACGTA 60.159 50.000 0.00 0.00 0.00 3.57
553 555 3.494398 GCACATAGAACATGGGGACGTAT 60.494 47.826 0.00 0.00 0.00 3.06
554 556 4.307432 CACATAGAACATGGGGACGTATC 58.693 47.826 0.00 0.00 0.00 2.24
555 557 3.323979 ACATAGAACATGGGGACGTATCC 59.676 47.826 0.00 0.00 45.42 2.59
610 612 9.942850 ATTTAGAAATATGTTTTCCAAAGTGGG 57.057 29.630 0.00 0.00 38.32 4.61
611 613 6.994421 AGAAATATGTTTTCCAAAGTGGGT 57.006 33.333 0.00 0.00 38.32 4.51
612 614 7.373617 AGAAATATGTTTTCCAAAGTGGGTT 57.626 32.000 0.00 0.00 38.32 4.11
613 615 7.441836 AGAAATATGTTTTCCAAAGTGGGTTC 58.558 34.615 0.00 0.00 38.32 3.62
614 616 6.739331 AATATGTTTTCCAAAGTGGGTTCA 57.261 33.333 0.00 0.00 38.32 3.18
615 617 6.933514 ATATGTTTTCCAAAGTGGGTTCAT 57.066 33.333 0.00 0.00 38.32 2.57
616 618 8.429237 AATATGTTTTCCAAAGTGGGTTCATA 57.571 30.769 0.00 1.05 38.32 2.15
617 619 6.933514 ATGTTTTCCAAAGTGGGTTCATAT 57.066 33.333 0.00 0.00 38.32 1.78
618 620 6.095432 TGTTTTCCAAAGTGGGTTCATATG 57.905 37.500 0.00 0.00 38.32 1.78
619 621 5.600484 TGTTTTCCAAAGTGGGTTCATATGT 59.400 36.000 1.90 0.00 38.32 2.29
620 622 6.778069 TGTTTTCCAAAGTGGGTTCATATGTA 59.222 34.615 1.90 0.00 38.32 2.29
621 623 7.453126 TGTTTTCCAAAGTGGGTTCATATGTAT 59.547 33.333 1.90 0.00 38.32 2.29
622 624 7.639113 TTTCCAAAGTGGGTTCATATGTATC 57.361 36.000 1.90 0.00 38.32 2.24
623 625 5.690865 TCCAAAGTGGGTTCATATGTATCC 58.309 41.667 4.72 4.72 38.32 2.59
624 626 4.515191 CCAAAGTGGGTTCATATGTATCCG 59.485 45.833 7.10 0.00 32.67 4.18
625 627 4.351874 AAGTGGGTTCATATGTATCCGG 57.648 45.455 7.10 0.00 0.00 5.14
626 628 2.637872 AGTGGGTTCATATGTATCCGGG 59.362 50.000 0.00 0.00 0.00 5.73
627 629 2.370849 GTGGGTTCATATGTATCCGGGT 59.629 50.000 0.00 0.00 0.00 5.28
628 630 3.050089 TGGGTTCATATGTATCCGGGTT 58.950 45.455 0.00 0.00 0.00 4.11
629 631 3.071892 TGGGTTCATATGTATCCGGGTTC 59.928 47.826 0.00 0.00 0.00 3.62
630 632 3.071892 GGGTTCATATGTATCCGGGTTCA 59.928 47.826 0.00 0.00 0.00 3.18
631 633 4.263331 GGGTTCATATGTATCCGGGTTCAT 60.263 45.833 11.88 11.88 0.00 2.57
632 634 4.935808 GGTTCATATGTATCCGGGTTCATC 59.064 45.833 10.45 0.00 0.00 2.92
633 635 4.819105 TCATATGTATCCGGGTTCATCC 57.181 45.455 10.45 0.00 0.00 3.51
634 636 4.164204 TCATATGTATCCGGGTTCATCCA 58.836 43.478 10.45 0.00 38.11 3.41
635 637 2.930826 ATGTATCCGGGTTCATCCAC 57.069 50.000 0.13 0.00 38.11 4.02
636 638 0.462375 TGTATCCGGGTTCATCCACG 59.538 55.000 0.00 0.00 38.11 4.94
637 639 0.878961 GTATCCGGGTTCATCCACGC 60.879 60.000 0.00 0.00 38.11 5.34
638 640 1.331399 TATCCGGGTTCATCCACGCA 61.331 55.000 0.00 0.00 38.11 5.24
639 641 2.869503 ATCCGGGTTCATCCACGCAC 62.870 60.000 0.00 0.00 38.11 5.34
640 642 2.047274 CGGGTTCATCCACGCACT 60.047 61.111 0.00 0.00 38.11 4.40
641 643 1.671054 CGGGTTCATCCACGCACTT 60.671 57.895 0.00 0.00 38.11 3.16
642 644 1.635663 CGGGTTCATCCACGCACTTC 61.636 60.000 0.00 0.00 38.11 3.01
643 645 0.321653 GGGTTCATCCACGCACTTCT 60.322 55.000 0.00 0.00 38.11 2.85
644 646 1.079503 GGTTCATCCACGCACTTCTC 58.920 55.000 0.00 0.00 35.97 2.87
645 647 1.079503 GTTCATCCACGCACTTCTCC 58.920 55.000 0.00 0.00 0.00 3.71
646 648 0.976641 TTCATCCACGCACTTCTCCT 59.023 50.000 0.00 0.00 0.00 3.69
647 649 0.247460 TCATCCACGCACTTCTCCTG 59.753 55.000 0.00 0.00 0.00 3.86
648 650 0.247460 CATCCACGCACTTCTCCTGA 59.753 55.000 0.00 0.00 0.00 3.86
654 656 2.425312 CACGCACTTCTCCTGAGATACT 59.575 50.000 0.00 0.00 37.29 2.12
670 672 4.543689 AGATACTATCCAACTTCACGGGA 58.456 43.478 0.00 0.00 34.70 5.14
716 1250 9.994432 CAATTCTCTCGCTATTGTTCTAAAAAT 57.006 29.630 0.00 0.00 0.00 1.82
894 1467 6.159988 ACGCAGCTATAGAAAATATCTCCAC 58.840 40.000 3.21 0.00 39.71 4.02
945 1518 4.803426 GCCGACGCCTCAGACCTG 62.803 72.222 0.00 0.00 0.00 4.00
946 1519 4.803426 CCGACGCCTCAGACCTGC 62.803 72.222 0.00 0.00 0.00 4.85
947 1520 4.056125 CGACGCCTCAGACCTGCA 62.056 66.667 0.00 0.00 0.00 4.41
948 1521 2.343758 GACGCCTCAGACCTGCAA 59.656 61.111 0.00 0.00 0.00 4.08
949 1522 2.029844 GACGCCTCAGACCTGCAAC 61.030 63.158 0.00 0.00 0.00 4.17
950 1523 2.743928 CGCCTCAGACCTGCAACC 60.744 66.667 0.00 0.00 0.00 3.77
951 1524 2.360475 GCCTCAGACCTGCAACCC 60.360 66.667 0.00 0.00 0.00 4.11
952 1525 2.352805 CCTCAGACCTGCAACCCC 59.647 66.667 0.00 0.00 0.00 4.95
953 1526 2.227036 CCTCAGACCTGCAACCCCT 61.227 63.158 0.00 0.00 0.00 4.79
954 1527 1.298014 CTCAGACCTGCAACCCCTC 59.702 63.158 0.00 0.00 0.00 4.30
955 1528 1.152030 TCAGACCTGCAACCCCTCT 60.152 57.895 0.00 0.00 0.00 3.69
956 1529 0.768221 TCAGACCTGCAACCCCTCTT 60.768 55.000 0.00 0.00 0.00 2.85
957 1530 0.322008 CAGACCTGCAACCCCTCTTC 60.322 60.000 0.00 0.00 0.00 2.87
958 1531 1.002011 GACCTGCAACCCCTCTTCC 60.002 63.158 0.00 0.00 0.00 3.46
959 1532 2.356667 CCTGCAACCCCTCTTCCC 59.643 66.667 0.00 0.00 0.00 3.97
960 1533 2.356667 CTGCAACCCCTCTTCCCC 59.643 66.667 0.00 0.00 0.00 4.81
961 1534 2.121506 TGCAACCCCTCTTCCCCT 60.122 61.111 0.00 0.00 0.00 4.79
962 1535 2.356667 GCAACCCCTCTTCCCCTG 59.643 66.667 0.00 0.00 0.00 4.45
963 1536 2.356667 CAACCCCTCTTCCCCTGC 59.643 66.667 0.00 0.00 0.00 4.85
964 1537 2.941583 AACCCCTCTTCCCCTGCC 60.942 66.667 0.00 0.00 0.00 4.85
987 1560 4.410400 CCAACCCCGCCACCTCTC 62.410 72.222 0.00 0.00 0.00 3.20
988 1561 4.760047 CAACCCCGCCACCTCTCG 62.760 72.222 0.00 0.00 0.00 4.04
1010 1583 4.467084 CCCCGTGATGTCCCGGTG 62.467 72.222 0.00 0.00 42.67 4.94
1011 1584 4.467084 CCCGTGATGTCCCGGTGG 62.467 72.222 0.00 0.00 42.67 4.61
1012 1585 4.467084 CCGTGATGTCCCGGTGGG 62.467 72.222 0.00 0.00 46.11 4.61
1025 1598 4.467084 GTGGGCGCCGGAGATCAA 62.467 66.667 22.54 0.00 0.00 2.57
1026 1599 4.161295 TGGGCGCCGGAGATCAAG 62.161 66.667 22.54 0.00 0.00 3.02
1027 1600 4.918201 GGGCGCCGGAGATCAAGG 62.918 72.222 22.54 0.00 0.00 3.61
1028 1601 4.162690 GGCGCCGGAGATCAAGGT 62.163 66.667 12.58 0.00 0.00 3.50
1029 1602 2.586357 GCGCCGGAGATCAAGGTC 60.586 66.667 10.31 0.00 0.00 3.85
1030 1603 3.082579 GCGCCGGAGATCAAGGTCT 62.083 63.158 10.31 0.00 0.00 3.85
1031 1604 1.735376 GCGCCGGAGATCAAGGTCTA 61.735 60.000 10.31 0.00 0.00 2.59
1032 1605 0.962489 CGCCGGAGATCAAGGTCTAT 59.038 55.000 5.05 0.00 0.00 1.98
1033 1606 2.160205 CGCCGGAGATCAAGGTCTATA 58.840 52.381 5.05 0.00 0.00 1.31
1034 1607 2.162608 CGCCGGAGATCAAGGTCTATAG 59.837 54.545 5.05 0.00 0.00 1.31
1035 1608 2.094442 GCCGGAGATCAAGGTCTATAGC 60.094 54.545 5.05 0.00 0.00 2.97
1036 1609 2.494073 CCGGAGATCAAGGTCTATAGCC 59.506 54.545 0.00 0.00 0.00 3.93
1037 1610 2.162608 CGGAGATCAAGGTCTATAGCCG 59.837 54.545 0.00 0.00 0.00 5.52
1038 1611 2.094442 GGAGATCAAGGTCTATAGCCGC 60.094 54.545 0.00 0.00 0.00 6.53
1039 1612 2.558795 GAGATCAAGGTCTATAGCCGCA 59.441 50.000 0.00 0.00 0.00 5.69
1040 1613 2.560542 AGATCAAGGTCTATAGCCGCAG 59.439 50.000 0.00 0.00 0.00 5.18
1054 1627 2.915137 GCAGGAACCCCCGCAAAA 60.915 61.111 0.00 0.00 40.87 2.44
1055 1628 2.503382 GCAGGAACCCCCGCAAAAA 61.503 57.895 0.00 0.00 40.87 1.94
1056 1629 1.365999 CAGGAACCCCCGCAAAAAC 59.634 57.895 0.00 0.00 40.87 2.43
1057 1630 1.835267 AGGAACCCCCGCAAAAACC 60.835 57.895 0.00 0.00 40.87 3.27
1058 1631 2.738480 GAACCCCCGCAAAAACCC 59.262 61.111 0.00 0.00 0.00 4.11
1059 1632 1.835267 GAACCCCCGCAAAAACCCT 60.835 57.895 0.00 0.00 0.00 4.34
1060 1633 0.540133 GAACCCCCGCAAAAACCCTA 60.540 55.000 0.00 0.00 0.00 3.53
1061 1634 0.105607 AACCCCCGCAAAAACCCTAA 60.106 50.000 0.00 0.00 0.00 2.69
1062 1635 0.105607 ACCCCCGCAAAAACCCTAAA 60.106 50.000 0.00 0.00 0.00 1.85
1063 1636 0.319083 CCCCCGCAAAAACCCTAAAC 59.681 55.000 0.00 0.00 0.00 2.01
1064 1637 0.319083 CCCCGCAAAAACCCTAAACC 59.681 55.000 0.00 0.00 0.00 3.27
1065 1638 0.319083 CCCGCAAAAACCCTAAACCC 59.681 55.000 0.00 0.00 0.00 4.11
1066 1639 0.319083 CCGCAAAAACCCTAAACCCC 59.681 55.000 0.00 0.00 0.00 4.95
1067 1640 0.319083 CGCAAAAACCCTAAACCCCC 59.681 55.000 0.00 0.00 0.00 5.40
1068 1641 1.724545 GCAAAAACCCTAAACCCCCT 58.275 50.000 0.00 0.00 0.00 4.79
1069 1642 1.621814 GCAAAAACCCTAAACCCCCTC 59.378 52.381 0.00 0.00 0.00 4.30
1070 1643 2.253610 CAAAAACCCTAAACCCCCTCC 58.746 52.381 0.00 0.00 0.00 4.30
1071 1644 1.856444 AAAACCCTAAACCCCCTCCT 58.144 50.000 0.00 0.00 0.00 3.69
1072 1645 1.081481 AAACCCTAAACCCCCTCCTG 58.919 55.000 0.00 0.00 0.00 3.86
1073 1646 0.197661 AACCCTAAACCCCCTCCTGA 59.802 55.000 0.00 0.00 0.00 3.86
1074 1647 0.197661 ACCCTAAACCCCCTCCTGAA 59.802 55.000 0.00 0.00 0.00 3.02
1075 1648 0.919710 CCCTAAACCCCCTCCTGAAG 59.080 60.000 0.00 0.00 0.00 3.02
1076 1649 0.919710 CCTAAACCCCCTCCTGAAGG 59.080 60.000 0.00 0.00 45.77 3.46
1077 1650 0.256177 CTAAACCCCCTCCTGAAGGC 59.744 60.000 0.00 0.00 44.71 4.35
1078 1651 1.212250 TAAACCCCCTCCTGAAGGCC 61.212 60.000 0.00 0.00 44.71 5.19
1080 1653 4.767892 CCCCCTCCTGAAGGCCCT 62.768 72.222 0.00 0.00 44.71 5.19
1081 1654 2.372688 CCCCTCCTGAAGGCCCTA 59.627 66.667 0.00 0.00 44.71 3.53
1082 1655 2.073101 CCCCTCCTGAAGGCCCTAC 61.073 68.421 0.00 0.00 44.71 3.18
1083 1656 2.073101 CCCTCCTGAAGGCCCTACC 61.073 68.421 0.00 0.00 44.71 3.18
1084 1657 2.073101 CCTCCTGAAGGCCCTACCC 61.073 68.421 0.00 0.00 38.67 3.69
1085 1658 2.042261 TCCTGAAGGCCCTACCCC 59.958 66.667 0.00 0.00 40.58 4.95
1086 1659 3.097162 CCTGAAGGCCCTACCCCC 61.097 72.222 0.00 0.00 40.58 5.40
1087 1660 3.480133 CTGAAGGCCCTACCCCCG 61.480 72.222 0.00 0.00 40.58 5.73
1088 1661 3.995809 CTGAAGGCCCTACCCCCGA 62.996 68.421 0.00 0.00 40.58 5.14
1089 1662 3.477346 GAAGGCCCTACCCCCGAC 61.477 72.222 0.00 0.00 40.58 4.79
1094 1667 4.745013 CCCTACCCCCGACCCCAA 62.745 72.222 0.00 0.00 0.00 4.12
1095 1668 2.367784 CCTACCCCCGACCCCAAT 60.368 66.667 0.00 0.00 0.00 3.16
1096 1669 2.449450 CCTACCCCCGACCCCAATC 61.449 68.421 0.00 0.00 0.00 2.67
1097 1670 2.367242 TACCCCCGACCCCAATCC 60.367 66.667 0.00 0.00 0.00 3.01
2785 3526 2.304761 ACTCCAAGTCAAGGCCGATAAA 59.695 45.455 0.00 0.00 0.00 1.40
2828 3569 3.349927 CACTCCATCATTGAAGAAGCCA 58.650 45.455 0.00 0.00 0.00 4.75
3251 3992 5.468746 TGTATTGCAGAGTCAACAACCTAAC 59.531 40.000 0.45 0.00 0.00 2.34
3288 4030 7.549147 TCTCCAAAGCTAAGTAAGTCCTTTA 57.451 36.000 0.00 0.00 0.00 1.85
3340 4082 5.618056 AAGCACATGATAAGGCGATTATG 57.382 39.130 0.00 5.90 34.10 1.90
3341 4083 4.898320 AGCACATGATAAGGCGATTATGA 58.102 39.130 0.00 0.00 34.10 2.15
3347 4089 8.939929 CACATGATAAGGCGATTATGAAAGTAT 58.060 33.333 0.00 0.00 34.10 2.12
3590 4332 4.690748 GCGAATGATTAGGCTGCAGTATAA 59.309 41.667 16.64 14.47 0.00 0.98
3974 4716 3.599343 TGTTAAAGCGCAGTGATCTGAT 58.401 40.909 11.47 0.00 43.76 2.90
4320 5063 1.072266 TGGGAACATACAACCTGCCT 58.928 50.000 0.00 0.00 33.40 4.75
4387 6431 9.802039 AGGAGAAAACATTTTTAGTGTATACCA 57.198 29.630 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 7.308589 GCGTAGGTAATATCAAATTCCTGCAAT 60.309 37.037 0.00 0.00 0.00 3.56
119 121 9.048446 GGTTACACTGAAAACACTAATTACAGA 57.952 33.333 0.00 0.00 0.00 3.41
164 166 3.435590 TGCACAAGAGCAGGCAAC 58.564 55.556 0.00 0.00 40.11 4.17
247 249 2.036992 CAGATGGTGCCCTCTCAGTATC 59.963 54.545 0.00 0.00 0.00 2.24
248 250 2.045524 CAGATGGTGCCCTCTCAGTAT 58.954 52.381 0.00 0.00 0.00 2.12
249 251 1.007118 TCAGATGGTGCCCTCTCAGTA 59.993 52.381 0.00 0.00 0.00 2.74
250 252 0.252421 TCAGATGGTGCCCTCTCAGT 60.252 55.000 0.00 0.00 0.00 3.41
251 253 0.907486 TTCAGATGGTGCCCTCTCAG 59.093 55.000 0.00 0.00 0.00 3.35
252 254 0.615331 GTTCAGATGGTGCCCTCTCA 59.385 55.000 0.00 0.00 0.00 3.27
253 255 0.107459 GGTTCAGATGGTGCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
254 256 1.566298 GGGTTCAGATGGTGCCCTCT 61.566 60.000 0.00 0.00 36.49 3.69
255 257 1.077429 GGGTTCAGATGGTGCCCTC 60.077 63.158 0.00 0.00 36.49 4.30
256 258 1.217057 ATGGGTTCAGATGGTGCCCT 61.217 55.000 0.00 0.00 39.97 5.19
257 259 1.039233 CATGGGTTCAGATGGTGCCC 61.039 60.000 0.00 0.00 39.73 5.36
258 260 1.039233 CCATGGGTTCAGATGGTGCC 61.039 60.000 2.85 0.00 35.33 5.01
259 261 1.039233 CCCATGGGTTCAGATGGTGC 61.039 60.000 23.93 0.00 37.96 5.01
260 262 1.039233 GCCCATGGGTTCAGATGGTG 61.039 60.000 31.58 2.09 37.96 4.17
261 263 1.307647 GCCCATGGGTTCAGATGGT 59.692 57.895 31.58 0.00 37.96 3.55
262 264 0.105862 ATGCCCATGGGTTCAGATGG 60.106 55.000 31.58 3.44 39.18 3.51
263 265 2.662535 TATGCCCATGGGTTCAGATG 57.337 50.000 31.58 4.22 37.65 2.90
264 266 2.820485 GCATATGCCCATGGGTTCAGAT 60.820 50.000 31.58 20.71 37.65 2.90
265 267 1.479205 GCATATGCCCATGGGTTCAGA 60.479 52.381 31.58 19.37 37.65 3.27
266 268 0.963962 GCATATGCCCATGGGTTCAG 59.036 55.000 31.58 18.29 37.65 3.02
267 269 0.261109 TGCATATGCCCATGGGTTCA 59.739 50.000 31.58 21.99 41.18 3.18
268 270 0.675633 GTGCATATGCCCATGGGTTC 59.324 55.000 31.58 16.76 41.18 3.62
269 271 0.760189 GGTGCATATGCCCATGGGTT 60.760 55.000 31.58 21.23 41.18 4.11
270 272 1.152483 GGTGCATATGCCCATGGGT 60.152 57.895 31.58 15.92 41.18 4.51
271 273 1.909781 GGGTGCATATGCCCATGGG 60.910 63.158 27.87 27.87 44.23 4.00
272 274 3.781760 GGGTGCATATGCCCATGG 58.218 61.111 26.58 4.14 44.23 3.66
276 278 2.170187 TGAAAAATGGGTGCATATGCCC 59.830 45.455 24.54 22.41 45.04 5.36
277 279 3.540314 TGAAAAATGGGTGCATATGCC 57.460 42.857 24.54 15.25 41.18 4.40
278 280 5.876612 TTTTGAAAAATGGGTGCATATGC 57.123 34.783 21.09 21.09 42.50 3.14
279 281 7.818642 ACATTTTTGAAAAATGGGTGCATATG 58.181 30.769 33.68 16.15 40.84 1.78
280 282 7.999450 ACATTTTTGAAAAATGGGTGCATAT 57.001 28.000 33.68 16.53 40.84 1.78
281 283 9.512588 AATACATTTTTGAAAAATGGGTGCATA 57.487 25.926 33.68 21.79 40.84 3.14
282 284 7.999450 ATACATTTTTGAAAAATGGGTGCAT 57.001 28.000 33.68 20.72 40.84 3.96
283 285 7.814264 AATACATTTTTGAAAAATGGGTGCA 57.186 28.000 33.68 19.76 40.84 4.57
337 339 9.638239 AACATGTATGCGTGATATTTTCTTTTT 57.362 25.926 10.22 0.00 35.65 1.94
338 340 9.289303 GAACATGTATGCGTGATATTTTCTTTT 57.711 29.630 10.22 0.00 35.65 2.27
339 341 7.639850 CGAACATGTATGCGTGATATTTTCTTT 59.360 33.333 10.22 0.00 35.65 2.52
340 342 7.125755 CGAACATGTATGCGTGATATTTTCTT 58.874 34.615 10.22 0.00 35.65 2.52
341 343 6.649436 CGAACATGTATGCGTGATATTTTCT 58.351 36.000 10.22 0.00 35.65 2.52
342 344 5.336990 GCGAACATGTATGCGTGATATTTTC 59.663 40.000 10.22 2.14 35.65 2.29
343 345 5.204833 GCGAACATGTATGCGTGATATTTT 58.795 37.500 10.22 0.00 35.65 1.82
344 346 4.272261 TGCGAACATGTATGCGTGATATTT 59.728 37.500 10.22 0.00 35.65 1.40
345 347 3.807071 TGCGAACATGTATGCGTGATATT 59.193 39.130 10.22 0.00 35.65 1.28
346 348 3.389221 TGCGAACATGTATGCGTGATAT 58.611 40.909 10.22 0.00 35.65 1.63
347 349 2.815478 TGCGAACATGTATGCGTGATA 58.185 42.857 10.22 0.00 35.65 2.15
348 350 1.650825 TGCGAACATGTATGCGTGAT 58.349 45.000 10.22 0.00 35.65 3.06
349 351 1.433534 TTGCGAACATGTATGCGTGA 58.566 45.000 10.22 4.03 35.65 4.35
350 352 2.239751 TTTGCGAACATGTATGCGTG 57.760 45.000 15.10 0.95 37.62 5.34
351 353 2.161410 ACATTTGCGAACATGTATGCGT 59.839 40.909 15.10 6.30 31.60 5.24
352 354 2.777845 GACATTTGCGAACATGTATGCG 59.222 45.455 15.10 12.72 33.62 4.73
353 355 3.787634 CAGACATTTGCGAACATGTATGC 59.212 43.478 4.44 13.70 36.21 3.14
354 356 4.973396 ACAGACATTTGCGAACATGTATG 58.027 39.130 14.36 14.36 44.61 2.39
355 357 5.220397 CGTACAGACATTTGCGAACATGTAT 60.220 40.000 0.00 0.00 33.62 2.29
356 358 4.090786 CGTACAGACATTTGCGAACATGTA 59.909 41.667 0.00 0.00 33.62 2.29
357 359 3.120683 CGTACAGACATTTGCGAACATGT 60.121 43.478 0.00 0.00 36.28 3.21
358 360 3.120683 ACGTACAGACATTTGCGAACATG 60.121 43.478 0.00 0.00 0.00 3.21
359 361 3.064207 ACGTACAGACATTTGCGAACAT 58.936 40.909 0.00 0.00 0.00 2.71
360 362 2.219903 CACGTACAGACATTTGCGAACA 59.780 45.455 0.00 0.00 0.00 3.18
361 363 2.411031 CCACGTACAGACATTTGCGAAC 60.411 50.000 0.00 0.00 0.00 3.95
362 364 1.795872 CCACGTACAGACATTTGCGAA 59.204 47.619 0.00 0.00 0.00 4.70
363 365 1.424403 CCACGTACAGACATTTGCGA 58.576 50.000 0.00 0.00 0.00 5.10
364 366 0.179225 GCCACGTACAGACATTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
365 367 0.871722 TGCCACGTACAGACATTTGC 59.128 50.000 0.00 0.00 0.00 3.68
366 368 1.870402 TGTGCCACGTACAGACATTTG 59.130 47.619 0.00 0.00 0.00 2.32
367 369 2.248280 TGTGCCACGTACAGACATTT 57.752 45.000 0.00 0.00 0.00 2.32
368 370 2.248280 TTGTGCCACGTACAGACATT 57.752 45.000 0.00 0.00 28.83 2.71
369 371 2.143122 CTTTGTGCCACGTACAGACAT 58.857 47.619 0.00 0.00 28.83 3.06
370 372 1.134640 ACTTTGTGCCACGTACAGACA 60.135 47.619 0.00 0.00 28.83 3.41
371 373 1.578583 ACTTTGTGCCACGTACAGAC 58.421 50.000 0.00 0.00 28.83 3.51
372 374 2.319136 AACTTTGTGCCACGTACAGA 57.681 45.000 0.00 0.00 28.83 3.41
373 375 3.414549 AAAACTTTGTGCCACGTACAG 57.585 42.857 0.00 0.00 28.83 2.74
374 376 4.575236 TCATAAAACTTTGTGCCACGTACA 59.425 37.500 0.00 0.00 30.49 2.90
375 377 5.098218 TCATAAAACTTTGTGCCACGTAC 57.902 39.130 0.00 0.00 30.49 3.67
376 378 5.752892 TTCATAAAACTTTGTGCCACGTA 57.247 34.783 0.00 0.00 30.49 3.57
377 379 4.640789 TTCATAAAACTTTGTGCCACGT 57.359 36.364 0.00 0.00 30.49 4.49
378 380 5.957910 TTTTCATAAAACTTTGTGCCACG 57.042 34.783 0.00 0.00 30.49 4.94
398 400 7.174772 ACAGAGGCAAAACAAAAAGACATTTTT 59.825 29.630 0.00 0.00 46.97 1.94
399 401 6.654582 ACAGAGGCAAAACAAAAAGACATTTT 59.345 30.769 0.00 0.00 41.93 1.82
400 402 6.172630 ACAGAGGCAAAACAAAAAGACATTT 58.827 32.000 0.00 0.00 0.00 2.32
401 403 5.733676 ACAGAGGCAAAACAAAAAGACATT 58.266 33.333 0.00 0.00 0.00 2.71
402 404 5.343307 ACAGAGGCAAAACAAAAAGACAT 57.657 34.783 0.00 0.00 0.00 3.06
403 405 4.799564 ACAGAGGCAAAACAAAAAGACA 57.200 36.364 0.00 0.00 0.00 3.41
404 406 7.589574 TTTTACAGAGGCAAAACAAAAAGAC 57.410 32.000 0.00 0.00 0.00 3.01
481 483 3.827008 TTATTGTGGCCTGTGCAAAAA 57.173 38.095 3.32 0.00 40.13 1.94
482 484 3.827008 TTTATTGTGGCCTGTGCAAAA 57.173 38.095 3.32 0.00 40.13 2.44
483 485 3.133721 ACTTTTATTGTGGCCTGTGCAAA 59.866 39.130 3.32 0.00 40.13 3.68
484 486 2.697751 ACTTTTATTGTGGCCTGTGCAA 59.302 40.909 3.32 4.67 40.13 4.08
485 487 2.315176 ACTTTTATTGTGGCCTGTGCA 58.685 42.857 3.32 0.00 40.13 4.57
486 488 3.385193 AACTTTTATTGTGGCCTGTGC 57.615 42.857 3.32 0.00 0.00 4.57
487 489 7.961325 AAAATAACTTTTATTGTGGCCTGTG 57.039 32.000 3.32 0.00 32.81 3.66
488 490 7.659799 GGAAAAATAACTTTTATTGTGGCCTGT 59.340 33.333 3.32 0.00 37.36 4.00
489 491 7.148656 CGGAAAAATAACTTTTATTGTGGCCTG 60.149 37.037 3.32 0.00 37.36 4.85
490 492 6.871492 CGGAAAAATAACTTTTATTGTGGCCT 59.129 34.615 3.32 0.00 37.36 5.19
491 493 6.647481 ACGGAAAAATAACTTTTATTGTGGCC 59.353 34.615 0.00 0.00 37.36 5.36
492 494 7.382759 TCACGGAAAAATAACTTTTATTGTGGC 59.617 33.333 0.00 0.00 37.36 5.01
493 495 8.804688 TCACGGAAAAATAACTTTTATTGTGG 57.195 30.769 0.00 0.00 37.36 4.17
502 504 8.974408 GCATAAAGTTTCACGGAAAAATAACTT 58.026 29.630 0.00 0.00 37.41 2.66
503 505 8.138712 TGCATAAAGTTTCACGGAAAAATAACT 58.861 29.630 0.00 0.00 33.14 2.24
504 506 8.288217 TGCATAAAGTTTCACGGAAAAATAAC 57.712 30.769 0.00 0.00 33.14 1.89
505 507 8.920665 CATGCATAAAGTTTCACGGAAAAATAA 58.079 29.630 0.00 0.00 33.14 1.40
506 508 7.062839 GCATGCATAAAGTTTCACGGAAAAATA 59.937 33.333 14.21 0.00 33.14 1.40
507 509 6.128580 GCATGCATAAAGTTTCACGGAAAAAT 60.129 34.615 14.21 0.00 33.14 1.82
508 510 5.176590 GCATGCATAAAGTTTCACGGAAAAA 59.823 36.000 14.21 0.00 33.14 1.94
509 511 4.683781 GCATGCATAAAGTTTCACGGAAAA 59.316 37.500 14.21 0.00 33.14 2.29
510 512 4.233789 GCATGCATAAAGTTTCACGGAAA 58.766 39.130 14.21 0.00 0.00 3.13
511 513 3.254411 TGCATGCATAAAGTTTCACGGAA 59.746 39.130 18.46 0.00 0.00 4.30
512 514 2.816672 TGCATGCATAAAGTTTCACGGA 59.183 40.909 18.46 0.00 0.00 4.69
513 515 2.916716 GTGCATGCATAAAGTTTCACGG 59.083 45.455 25.64 0.00 0.00 4.94
514 516 3.563508 TGTGCATGCATAAAGTTTCACG 58.436 40.909 25.64 0.00 0.00 4.35
515 517 6.554419 TCTATGTGCATGCATAAAGTTTCAC 58.446 36.000 25.64 7.17 31.76 3.18
516 518 6.756299 TCTATGTGCATGCATAAAGTTTCA 57.244 33.333 25.64 14.63 31.76 2.69
517 519 7.028962 TGTTCTATGTGCATGCATAAAGTTTC 58.971 34.615 25.64 8.75 31.76 2.78
518 520 6.923012 TGTTCTATGTGCATGCATAAAGTTT 58.077 32.000 25.64 8.23 31.76 2.66
519 521 6.513806 TGTTCTATGTGCATGCATAAAGTT 57.486 33.333 25.64 8.63 31.76 2.66
520 522 6.460537 CCATGTTCTATGTGCATGCATAAAGT 60.461 38.462 25.64 9.03 38.79 2.66
521 523 5.918576 CCATGTTCTATGTGCATGCATAAAG 59.081 40.000 25.64 19.72 38.79 1.85
522 524 5.221283 CCCATGTTCTATGTGCATGCATAAA 60.221 40.000 25.64 13.31 38.79 1.40
523 525 4.278919 CCCATGTTCTATGTGCATGCATAA 59.721 41.667 25.64 16.04 38.79 1.90
524 526 3.822167 CCCATGTTCTATGTGCATGCATA 59.178 43.478 25.64 22.69 38.79 3.14
525 527 2.626266 CCCATGTTCTATGTGCATGCAT 59.374 45.455 25.64 11.73 38.79 3.96
526 528 2.025898 CCCATGTTCTATGTGCATGCA 58.974 47.619 18.46 18.46 38.79 3.96
527 529 1.338973 CCCCATGTTCTATGTGCATGC 59.661 52.381 11.82 11.82 38.79 4.06
528 530 2.620115 GTCCCCATGTTCTATGTGCATG 59.380 50.000 0.00 0.00 39.54 4.06
529 531 2.746142 CGTCCCCATGTTCTATGTGCAT 60.746 50.000 0.00 0.00 0.00 3.96
530 532 1.406751 CGTCCCCATGTTCTATGTGCA 60.407 52.381 0.00 0.00 0.00 4.57
531 533 1.299541 CGTCCCCATGTTCTATGTGC 58.700 55.000 0.00 0.00 0.00 4.57
532 534 2.691409 ACGTCCCCATGTTCTATGTG 57.309 50.000 0.00 0.00 0.00 3.21
533 535 3.323979 GGATACGTCCCCATGTTCTATGT 59.676 47.826 0.00 0.00 38.69 2.29
534 536 3.926616 GGATACGTCCCCATGTTCTATG 58.073 50.000 0.00 0.00 38.69 2.23
584 586 9.942850 CCCACTTTGGAAAACATATTTCTAAAT 57.057 29.630 11.23 0.00 40.96 1.40
585 587 8.929487 ACCCACTTTGGAAAACATATTTCTAAA 58.071 29.630 10.60 10.60 40.96 1.85
586 588 8.485578 ACCCACTTTGGAAAACATATTTCTAA 57.514 30.769 0.00 0.00 40.96 2.10
587 589 8.485578 AACCCACTTTGGAAAACATATTTCTA 57.514 30.769 0.00 0.00 40.96 2.10
588 590 6.994421 ACCCACTTTGGAAAACATATTTCT 57.006 33.333 0.00 0.00 40.96 2.52
589 591 7.213678 TGAACCCACTTTGGAAAACATATTTC 58.786 34.615 0.00 0.00 40.96 2.17
590 592 7.130681 TGAACCCACTTTGGAAAACATATTT 57.869 32.000 0.00 0.00 40.96 1.40
591 593 6.739331 TGAACCCACTTTGGAAAACATATT 57.261 33.333 0.00 0.00 40.96 1.28
592 594 6.933514 ATGAACCCACTTTGGAAAACATAT 57.066 33.333 0.00 0.00 40.96 1.78
593 595 7.453126 ACATATGAACCCACTTTGGAAAACATA 59.547 33.333 10.38 0.00 40.96 2.29
594 596 6.269769 ACATATGAACCCACTTTGGAAAACAT 59.730 34.615 10.38 0.00 40.96 2.71
595 597 5.600484 ACATATGAACCCACTTTGGAAAACA 59.400 36.000 10.38 0.00 40.96 2.83
596 598 6.096673 ACATATGAACCCACTTTGGAAAAC 57.903 37.500 10.38 0.00 40.96 2.43
597 599 7.123547 GGATACATATGAACCCACTTTGGAAAA 59.876 37.037 10.38 0.00 40.96 2.29
598 600 6.605594 GGATACATATGAACCCACTTTGGAAA 59.394 38.462 10.38 0.00 40.96 3.13
599 601 6.126409 GGATACATATGAACCCACTTTGGAA 58.874 40.000 10.38 0.00 40.96 3.53
600 602 5.686387 CGGATACATATGAACCCACTTTGGA 60.686 44.000 10.38 0.00 40.96 3.53
601 603 4.515191 CGGATACATATGAACCCACTTTGG 59.485 45.833 10.38 0.00 37.25 3.28
602 604 4.515191 CCGGATACATATGAACCCACTTTG 59.485 45.833 10.38 0.00 0.00 2.77
603 605 4.445735 CCCGGATACATATGAACCCACTTT 60.446 45.833 10.38 0.00 0.00 2.66
604 606 3.072476 CCCGGATACATATGAACCCACTT 59.928 47.826 10.38 0.00 0.00 3.16
605 607 2.637872 CCCGGATACATATGAACCCACT 59.362 50.000 10.38 0.00 0.00 4.00
606 608 2.370849 ACCCGGATACATATGAACCCAC 59.629 50.000 10.38 0.00 0.00 4.61
607 609 2.696775 ACCCGGATACATATGAACCCA 58.303 47.619 10.38 0.00 0.00 4.51
608 610 3.071892 TGAACCCGGATACATATGAACCC 59.928 47.826 10.38 5.90 0.00 4.11
609 611 4.345859 TGAACCCGGATACATATGAACC 57.654 45.455 10.38 8.39 0.00 3.62
610 612 4.935808 GGATGAACCCGGATACATATGAAC 59.064 45.833 10.38 0.08 0.00 3.18
611 613 4.595350 TGGATGAACCCGGATACATATGAA 59.405 41.667 10.38 0.00 38.00 2.57
612 614 4.020573 GTGGATGAACCCGGATACATATGA 60.021 45.833 10.38 0.00 38.00 2.15
613 615 4.253685 GTGGATGAACCCGGATACATATG 58.746 47.826 0.73 0.00 38.00 1.78
614 616 3.056107 CGTGGATGAACCCGGATACATAT 60.056 47.826 0.73 0.00 38.00 1.78
615 617 2.297880 CGTGGATGAACCCGGATACATA 59.702 50.000 0.73 0.00 38.00 2.29
616 618 1.070134 CGTGGATGAACCCGGATACAT 59.930 52.381 0.73 4.84 38.00 2.29
617 619 0.462375 CGTGGATGAACCCGGATACA 59.538 55.000 0.73 0.00 38.00 2.29
618 620 0.878961 GCGTGGATGAACCCGGATAC 60.879 60.000 0.73 0.00 38.00 2.24
619 621 1.331399 TGCGTGGATGAACCCGGATA 61.331 55.000 0.73 0.00 38.00 2.59
620 622 2.189521 GCGTGGATGAACCCGGAT 59.810 61.111 0.73 0.00 38.00 4.18
621 623 3.315140 TGCGTGGATGAACCCGGA 61.315 61.111 0.73 0.00 38.00 5.14
622 624 3.124921 GTGCGTGGATGAACCCGG 61.125 66.667 0.00 0.00 38.00 5.73
623 625 1.635663 GAAGTGCGTGGATGAACCCG 61.636 60.000 0.00 0.00 38.00 5.28
624 626 0.321653 AGAAGTGCGTGGATGAACCC 60.322 55.000 0.00 0.00 38.00 4.11
625 627 1.079503 GAGAAGTGCGTGGATGAACC 58.920 55.000 0.00 0.00 39.54 3.62
626 628 1.079503 GGAGAAGTGCGTGGATGAAC 58.920 55.000 0.00 0.00 0.00 3.18
627 629 0.976641 AGGAGAAGTGCGTGGATGAA 59.023 50.000 0.00 0.00 0.00 2.57
628 630 0.247460 CAGGAGAAGTGCGTGGATGA 59.753 55.000 0.00 0.00 0.00 2.92
629 631 0.247460 TCAGGAGAAGTGCGTGGATG 59.753 55.000 0.00 0.00 0.00 3.51
630 632 0.534412 CTCAGGAGAAGTGCGTGGAT 59.466 55.000 0.00 0.00 0.00 3.41
631 633 0.539669 TCTCAGGAGAAGTGCGTGGA 60.540 55.000 0.00 0.00 33.91 4.02
632 634 0.534412 ATCTCAGGAGAAGTGCGTGG 59.466 55.000 2.68 0.00 41.36 4.94
633 635 2.425312 AGTATCTCAGGAGAAGTGCGTG 59.575 50.000 2.68 0.00 41.36 5.34
634 636 2.729194 AGTATCTCAGGAGAAGTGCGT 58.271 47.619 2.68 0.00 41.36 5.24
635 637 4.083003 GGATAGTATCTCAGGAGAAGTGCG 60.083 50.000 9.97 0.00 41.36 5.34
636 638 4.830046 TGGATAGTATCTCAGGAGAAGTGC 59.170 45.833 9.97 0.00 41.36 4.40
637 639 6.549364 AGTTGGATAGTATCTCAGGAGAAGTG 59.451 42.308 9.97 0.00 41.36 3.16
638 640 6.678547 AGTTGGATAGTATCTCAGGAGAAGT 58.321 40.000 9.97 0.00 41.36 3.01
639 641 7.286546 TGAAGTTGGATAGTATCTCAGGAGAAG 59.713 40.741 9.97 0.00 41.36 2.85
640 642 7.068839 GTGAAGTTGGATAGTATCTCAGGAGAA 59.931 40.741 9.97 0.00 41.36 2.87
641 643 6.547880 GTGAAGTTGGATAGTATCTCAGGAGA 59.452 42.308 9.97 0.81 42.37 3.71
642 644 6.514212 CGTGAAGTTGGATAGTATCTCAGGAG 60.514 46.154 9.97 0.00 0.00 3.69
643 645 5.299531 CGTGAAGTTGGATAGTATCTCAGGA 59.700 44.000 9.97 0.00 0.00 3.86
644 646 5.508153 CCGTGAAGTTGGATAGTATCTCAGG 60.508 48.000 9.97 10.04 0.00 3.86
645 647 5.508153 CCCGTGAAGTTGGATAGTATCTCAG 60.508 48.000 9.97 1.29 0.00 3.35
646 648 4.341235 CCCGTGAAGTTGGATAGTATCTCA 59.659 45.833 9.97 2.94 0.00 3.27
647 649 4.583489 TCCCGTGAAGTTGGATAGTATCTC 59.417 45.833 9.97 0.39 0.00 2.75
648 650 4.543689 TCCCGTGAAGTTGGATAGTATCT 58.456 43.478 9.97 0.00 0.00 1.98
654 656 2.617021 GCCTTTCCCGTGAAGTTGGATA 60.617 50.000 1.88 0.00 0.00 2.59
670 672 6.661304 ATTGACTCATCTTCAAAAGCCTTT 57.339 33.333 0.00 0.00 36.57 3.11
716 1250 6.371825 TGAGCGAGATAGCGAGAGAATTTATA 59.628 38.462 0.00 0.00 43.00 0.98
843 1416 0.105039 GGTCGGAGCTTGGGTAGATG 59.895 60.000 0.00 0.00 0.00 2.90
928 1501 4.803426 CAGGTCTGAGGCGTCGGC 62.803 72.222 11.43 11.43 38.90 5.54
929 1502 4.803426 GCAGGTCTGAGGCGTCGG 62.803 72.222 9.00 9.00 0.00 4.79
930 1503 3.573772 TTGCAGGTCTGAGGCGTCG 62.574 63.158 1.65 0.00 0.00 5.12
931 1504 2.029844 GTTGCAGGTCTGAGGCGTC 61.030 63.158 1.65 0.00 0.00 5.19
932 1505 2.031163 GTTGCAGGTCTGAGGCGT 59.969 61.111 1.65 0.00 0.00 5.68
933 1506 2.743928 GGTTGCAGGTCTGAGGCG 60.744 66.667 1.65 0.00 0.00 5.52
934 1507 2.360475 GGGTTGCAGGTCTGAGGC 60.360 66.667 1.65 0.00 0.00 4.70
935 1508 2.190488 GAGGGGTTGCAGGTCTGAGG 62.190 65.000 1.65 0.00 0.00 3.86
936 1509 1.197430 AGAGGGGTTGCAGGTCTGAG 61.197 60.000 1.65 0.00 0.00 3.35
937 1510 0.768221 AAGAGGGGTTGCAGGTCTGA 60.768 55.000 1.65 0.00 0.00 3.27
938 1511 0.322008 GAAGAGGGGTTGCAGGTCTG 60.322 60.000 0.00 0.00 0.00 3.51
939 1512 1.492993 GGAAGAGGGGTTGCAGGTCT 61.493 60.000 0.00 0.00 0.00 3.85
940 1513 1.002011 GGAAGAGGGGTTGCAGGTC 60.002 63.158 0.00 0.00 0.00 3.85
941 1514 2.539081 GGGAAGAGGGGTTGCAGGT 61.539 63.158 0.00 0.00 0.00 4.00
942 1515 2.356667 GGGAAGAGGGGTTGCAGG 59.643 66.667 0.00 0.00 0.00 4.85
943 1516 2.234296 AGGGGAAGAGGGGTTGCAG 61.234 63.158 0.00 0.00 0.00 4.41
944 1517 2.121506 AGGGGAAGAGGGGTTGCA 60.122 61.111 0.00 0.00 0.00 4.08
945 1518 2.356667 CAGGGGAAGAGGGGTTGC 59.643 66.667 0.00 0.00 0.00 4.17
946 1519 2.356667 GCAGGGGAAGAGGGGTTG 59.643 66.667 0.00 0.00 0.00 3.77
947 1520 2.941583 GGCAGGGGAAGAGGGGTT 60.942 66.667 0.00 0.00 0.00 4.11
970 1543 4.410400 GAGAGGTGGCGGGGTTGG 62.410 72.222 0.00 0.00 0.00 3.77
971 1544 4.760047 CGAGAGGTGGCGGGGTTG 62.760 72.222 0.00 0.00 0.00 3.77
1008 1581 4.467084 TTGATCTCCGGCGCCCAC 62.467 66.667 23.46 6.54 0.00 4.61
1009 1582 4.161295 CTTGATCTCCGGCGCCCA 62.161 66.667 23.46 9.07 0.00 5.36
1010 1583 4.918201 CCTTGATCTCCGGCGCCC 62.918 72.222 23.46 5.93 0.00 6.13
1011 1584 4.162690 ACCTTGATCTCCGGCGCC 62.163 66.667 19.07 19.07 0.00 6.53
1012 1585 1.735376 TAGACCTTGATCTCCGGCGC 61.735 60.000 0.00 0.00 0.00 6.53
1013 1586 0.962489 ATAGACCTTGATCTCCGGCG 59.038 55.000 0.00 0.00 0.00 6.46
1014 1587 2.094442 GCTATAGACCTTGATCTCCGGC 60.094 54.545 3.21 0.00 0.00 6.13
1015 1588 2.494073 GGCTATAGACCTTGATCTCCGG 59.506 54.545 3.21 0.00 0.00 5.14
1016 1589 2.162608 CGGCTATAGACCTTGATCTCCG 59.837 54.545 3.21 0.00 0.00 4.63
1017 1590 2.094442 GCGGCTATAGACCTTGATCTCC 60.094 54.545 3.21 0.00 0.00 3.71
1018 1591 2.558795 TGCGGCTATAGACCTTGATCTC 59.441 50.000 3.21 0.00 0.00 2.75
1019 1592 2.560542 CTGCGGCTATAGACCTTGATCT 59.439 50.000 3.21 0.00 0.00 2.75
1020 1593 2.353208 CCTGCGGCTATAGACCTTGATC 60.353 54.545 3.21 0.00 0.00 2.92
1021 1594 1.620819 CCTGCGGCTATAGACCTTGAT 59.379 52.381 3.21 0.00 0.00 2.57
1022 1595 1.040646 CCTGCGGCTATAGACCTTGA 58.959 55.000 3.21 0.00 0.00 3.02
1023 1596 1.040646 TCCTGCGGCTATAGACCTTG 58.959 55.000 3.21 0.00 0.00 3.61
1024 1597 1.413077 GTTCCTGCGGCTATAGACCTT 59.587 52.381 3.21 0.00 0.00 3.50
1025 1598 1.041437 GTTCCTGCGGCTATAGACCT 58.959 55.000 3.21 0.00 0.00 3.85
1026 1599 0.033642 GGTTCCTGCGGCTATAGACC 59.966 60.000 3.21 3.57 0.00 3.85
1027 1600 0.033642 GGGTTCCTGCGGCTATAGAC 59.966 60.000 3.21 0.00 0.00 2.59
1028 1601 1.119574 GGGGTTCCTGCGGCTATAGA 61.120 60.000 3.21 0.00 0.00 1.98
1029 1602 1.371558 GGGGTTCCTGCGGCTATAG 59.628 63.158 0.00 0.00 0.00 1.31
1030 1603 2.144738 GGGGGTTCCTGCGGCTATA 61.145 63.158 0.00 0.00 0.00 1.31
1031 1604 3.489513 GGGGGTTCCTGCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
1038 1611 1.365999 GTTTTTGCGGGGGTTCCTG 59.634 57.895 0.00 0.00 42.40 3.86
1039 1612 1.835267 GGTTTTTGCGGGGGTTCCT 60.835 57.895 0.00 0.00 0.00 3.36
1040 1613 2.738480 GGTTTTTGCGGGGGTTCC 59.262 61.111 0.00 0.00 0.00 3.62
1041 1614 0.540133 TAGGGTTTTTGCGGGGGTTC 60.540 55.000 0.00 0.00 0.00 3.62
1042 1615 0.105607 TTAGGGTTTTTGCGGGGGTT 60.106 50.000 0.00 0.00 0.00 4.11
1043 1616 0.105607 TTTAGGGTTTTTGCGGGGGT 60.106 50.000 0.00 0.00 0.00 4.95
1044 1617 0.319083 GTTTAGGGTTTTTGCGGGGG 59.681 55.000 0.00 0.00 0.00 5.40
1045 1618 0.319083 GGTTTAGGGTTTTTGCGGGG 59.681 55.000 0.00 0.00 0.00 5.73
1046 1619 0.319083 GGGTTTAGGGTTTTTGCGGG 59.681 55.000 0.00 0.00 0.00 6.13
1047 1620 0.319083 GGGGTTTAGGGTTTTTGCGG 59.681 55.000 0.00 0.00 0.00 5.69
1048 1621 0.319083 GGGGGTTTAGGGTTTTTGCG 59.681 55.000 0.00 0.00 0.00 4.85
1049 1622 1.621814 GAGGGGGTTTAGGGTTTTTGC 59.378 52.381 0.00 0.00 0.00 3.68
1050 1623 2.158219 AGGAGGGGGTTTAGGGTTTTTG 60.158 50.000 0.00 0.00 0.00 2.44
1051 1624 2.158154 AGGAGGGGGTTTAGGGTTTTT 58.842 47.619 0.00 0.00 0.00 1.94
1052 1625 1.431633 CAGGAGGGGGTTTAGGGTTTT 59.568 52.381 0.00 0.00 0.00 2.43
1053 1626 1.081481 CAGGAGGGGGTTTAGGGTTT 58.919 55.000 0.00 0.00 0.00 3.27
1054 1627 0.197661 TCAGGAGGGGGTTTAGGGTT 59.802 55.000 0.00 0.00 0.00 4.11
1055 1628 0.197661 TTCAGGAGGGGGTTTAGGGT 59.802 55.000 0.00 0.00 0.00 4.34
1056 1629 0.919710 CTTCAGGAGGGGGTTTAGGG 59.080 60.000 0.00 0.00 0.00 3.53
1057 1630 0.919710 CCTTCAGGAGGGGGTTTAGG 59.080 60.000 0.00 0.00 42.26 2.69
1058 1631 0.256177 GCCTTCAGGAGGGGGTTTAG 59.744 60.000 0.00 0.00 46.40 1.85
1059 1632 1.212250 GGCCTTCAGGAGGGGGTTTA 61.212 60.000 0.00 0.00 46.40 2.01
1060 1633 2.548547 GGCCTTCAGGAGGGGGTTT 61.549 63.158 0.00 0.00 46.40 3.27
1061 1634 2.941583 GGCCTTCAGGAGGGGGTT 60.942 66.667 0.00 0.00 46.40 4.11
1063 1636 3.347562 TAGGGCCTTCAGGAGGGGG 62.348 68.421 13.45 0.00 46.40 5.40
1064 1637 2.073101 GTAGGGCCTTCAGGAGGGG 61.073 68.421 13.45 0.00 46.40 4.79
1065 1638 2.073101 GGTAGGGCCTTCAGGAGGG 61.073 68.421 13.45 0.00 46.40 4.30
1067 1640 2.073101 GGGGTAGGGCCTTCAGGAG 61.073 68.421 13.45 0.00 37.39 3.69
1068 1641 2.042261 GGGGTAGGGCCTTCAGGA 59.958 66.667 13.45 0.00 37.39 3.86
1069 1642 3.097162 GGGGGTAGGGCCTTCAGG 61.097 72.222 13.45 0.00 37.43 3.86
1070 1643 3.480133 CGGGGGTAGGGCCTTCAG 61.480 72.222 13.45 0.00 37.43 3.02
1071 1644 4.014075 TCGGGGGTAGGGCCTTCA 62.014 66.667 13.45 0.00 37.43 3.02
1072 1645 3.477346 GTCGGGGGTAGGGCCTTC 61.477 72.222 13.45 6.46 37.43 3.46
1077 1650 4.745013 TTGGGGTCGGGGGTAGGG 62.745 72.222 0.00 0.00 0.00 3.53
1078 1651 2.367784 ATTGGGGTCGGGGGTAGG 60.368 66.667 0.00 0.00 0.00 3.18
1079 1652 2.449450 GGATTGGGGTCGGGGGTAG 61.449 68.421 0.00 0.00 0.00 3.18
1080 1653 2.367242 GGATTGGGGTCGGGGGTA 60.367 66.667 0.00 0.00 0.00 3.69
1085 1658 3.489513 GAGGGGGATTGGGGTCGG 61.490 72.222 0.00 0.00 0.00 4.79
1086 1659 3.489513 GGAGGGGGATTGGGGTCG 61.490 72.222 0.00 0.00 0.00 4.79
1087 1660 2.286885 TGGAGGGGGATTGGGGTC 60.287 66.667 0.00 0.00 0.00 4.46
1088 1661 2.287194 CTGGAGGGGGATTGGGGT 60.287 66.667 0.00 0.00 0.00 4.95
1089 1662 1.622442 TTCTGGAGGGGGATTGGGG 60.622 63.158 0.00 0.00 0.00 4.96
1090 1663 1.615262 GTTCTGGAGGGGGATTGGG 59.385 63.158 0.00 0.00 0.00 4.12
1091 1664 0.921256 AGGTTCTGGAGGGGGATTGG 60.921 60.000 0.00 0.00 0.00 3.16
1092 1665 1.771255 CTAGGTTCTGGAGGGGGATTG 59.229 57.143 0.00 0.00 0.00 2.67
1093 1666 1.977202 GCTAGGTTCTGGAGGGGGATT 60.977 57.143 0.00 0.00 0.00 3.01
1094 1667 0.400670 GCTAGGTTCTGGAGGGGGAT 60.401 60.000 0.00 0.00 0.00 3.85
1095 1668 1.003051 GCTAGGTTCTGGAGGGGGA 59.997 63.158 0.00 0.00 0.00 4.81
1096 1669 2.073101 GGCTAGGTTCTGGAGGGGG 61.073 68.421 0.00 0.00 0.00 5.40
1097 1670 2.073101 GGGCTAGGTTCTGGAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
1098 1671 2.073101 GGGGCTAGGTTCTGGAGGG 61.073 68.421 0.00 0.00 0.00 4.30
1099 1672 2.435693 CGGGGCTAGGTTCTGGAGG 61.436 68.421 0.00 0.00 0.00 4.30
1100 1673 1.381327 TCGGGGCTAGGTTCTGGAG 60.381 63.158 0.00 0.00 0.00 3.86
1101 1674 1.684734 GTCGGGGCTAGGTTCTGGA 60.685 63.158 0.00 0.00 0.00 3.86
2669 3410 2.053865 CGGCAAAGGTGGGCATGAT 61.054 57.895 0.00 0.00 0.00 2.45
2785 3526 3.006967 GCGGACACTAATGGGAGTATGAT 59.993 47.826 0.00 0.00 0.00 2.45
2828 3569 6.256053 TCTTTTATCCAGATCCTTTGCCTTT 58.744 36.000 0.00 0.00 0.00 3.11
3251 3992 5.544650 AGCTTTGGAGATTTTTCACCAATG 58.455 37.500 5.85 8.89 39.43 2.82
3288 4030 2.374504 AGGATGAATGAATCAGGGCGAT 59.625 45.455 0.00 0.00 42.53 4.58
3340 4082 8.721478 TCTGTGCATAAGAAAAGTCATACTTTC 58.279 33.333 5.57 0.00 46.78 2.62
3347 4089 7.509141 TCAAATCTGTGCATAAGAAAAGTCA 57.491 32.000 6.20 0.00 0.00 3.41
3422 4164 3.231207 AGATCTACTGGCACTCGGTAT 57.769 47.619 0.00 0.00 36.69 2.73
3423 4165 2.730934 AGATCTACTGGCACTCGGTA 57.269 50.000 0.00 0.00 36.22 4.02
3590 4332 9.770097 CGATCATTAATGATTAGGCTATACCAT 57.230 33.333 27.45 5.41 46.84 3.55
3794 4536 9.884465 CAGTATTAGCAATTGCCTAAGAAATAC 57.116 33.333 26.45 23.87 43.38 1.89
3900 4642 4.974645 ATCTGGGTGTAGAAAGTCAACA 57.025 40.909 0.00 0.00 0.00 3.33
3974 4716 2.266279 AGGAGGCCTAAGTTGCTGTTA 58.734 47.619 4.42 0.00 28.47 2.41
4272 5015 2.562296 AGGCCTCCTTTGGTTCATAGA 58.438 47.619 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.