Multiple sequence alignment - TraesCS6D01G177400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G177400 chr6D 100.000 5369 0 0 1 5369 178008219 178002851 0.000000e+00 9915.0
1 TraesCS6D01G177400 chr6D 100.000 31 0 0 2393 2423 178005762 178005732 2.090000e-04 58.4
2 TraesCS6D01G177400 chr6D 100.000 31 0 0 2458 2488 178005827 178005797 2.090000e-04 58.4
3 TraesCS6D01G177400 chr6D 100.000 28 0 0 469 496 448714087 448714060 1.000000e-02 52.8
4 TraesCS6D01G177400 chr6B 95.974 4322 79 21 607 4882 295765075 295769347 0.000000e+00 6929.0
5 TraesCS6D01G177400 chr6B 85.043 468 51 7 1 467 295763800 295764249 4.900000e-125 459.0
6 TraesCS6D01G177400 chr6B 79.087 263 40 10 200 448 384834027 384834288 3.330000e-37 167.0
7 TraesCS6D01G177400 chr6A 97.482 2978 38 6 1974 4941 230708621 230705671 0.000000e+00 5049.0
8 TraesCS6D01G177400 chr6A 94.982 1375 25 7 660 1990 230710055 230708681 0.000000e+00 2117.0
9 TraesCS6D01G177400 chr6A 88.397 474 46 6 3 474 230710588 230710122 3.630000e-156 562.0
10 TraesCS6D01G177400 chr6A 83.333 120 13 6 4831 4945 463748423 463748540 2.650000e-18 104.0
11 TraesCS6D01G177400 chr6A 81.061 132 19 5 4817 4943 598307688 598307558 3.420000e-17 100.0
12 TraesCS6D01G177400 chr6A 100.000 28 0 0 469 496 50274343 50274316 1.000000e-02 52.8
13 TraesCS6D01G177400 chr6A 100.000 28 0 0 469 496 349779905 349779878 1.000000e-02 52.8
14 TraesCS6D01G177400 chr6A 100.000 28 0 0 469 496 571646238 571646211 1.000000e-02 52.8
15 TraesCS6D01G177400 chr1D 97.653 426 10 0 4944 5369 321703750 321703325 0.000000e+00 732.0
16 TraesCS6D01G177400 chr1D 72.585 766 170 29 2793 3541 290444846 290445588 1.170000e-51 215.0
17 TraesCS6D01G177400 chr1D 80.392 102 18 2 2574 2674 290444624 290444724 5.770000e-10 76.8
18 TraesCS6D01G177400 chr1D 83.077 65 4 3 469 527 311357701 311357638 1.000000e-02 52.8
19 TraesCS6D01G177400 chr7A 96.009 426 17 0 4944 5369 696025869 696026294 0.000000e+00 693.0
20 TraesCS6D01G177400 chr7A 92.019 426 31 2 4944 5369 195395328 195394906 3.580000e-166 595.0
21 TraesCS6D01G177400 chr3D 94.836 426 19 2 4944 5369 146047673 146048095 0.000000e+00 662.0
22 TraesCS6D01G177400 chr3D 84.483 116 13 5 4831 4942 542408573 542408459 5.690000e-20 110.0
23 TraesCS6D01G177400 chr3A 94.087 389 20 1 4984 5369 692350166 692350554 5.990000e-164 588.0
24 TraesCS6D01G177400 chr2B 92.840 405 25 4 4944 5346 26465396 26464994 7.750000e-163 584.0
25 TraesCS6D01G177400 chr2B 78.667 150 27 4 201 350 207704886 207705030 1.590000e-15 95.3
26 TraesCS6D01G177400 chr1A 93.384 393 26 0 4977 5369 245932861 245932469 2.790000e-162 582.0
27 TraesCS6D01G177400 chr1A 93.247 385 26 0 4984 5368 245942067 245941683 7.800000e-158 568.0
28 TraesCS6D01G177400 chr1A 72.324 766 172 29 2793 3541 362863724 362864466 2.540000e-48 204.0
29 TraesCS6D01G177400 chr1A 80.392 102 18 2 2574 2674 362863502 362863602 5.770000e-10 76.8
30 TraesCS6D01G177400 chr2D 93.077 390 23 2 4984 5369 229827042 229827431 7.800000e-158 568.0
31 TraesCS6D01G177400 chr1B 71.787 996 222 41 2574 3541 391573542 391574506 1.500000e-55 228.0
32 TraesCS6D01G177400 chr1B 84.810 158 20 4 293 448 60053957 60053802 7.200000e-34 156.0
33 TraesCS6D01G177400 chr5A 80.000 260 35 12 204 449 81453453 81453197 5.530000e-40 176.0
34 TraesCS6D01G177400 chr4B 79.104 268 40 10 200 454 548198607 548198343 2.570000e-38 171.0
35 TraesCS6D01G177400 chr4B 77.642 246 36 16 201 436 101300902 101301138 1.210000e-26 132.0
36 TraesCS6D01G177400 chr4B 84.746 118 11 5 4831 4943 502600901 502600786 1.580000e-20 111.0
37 TraesCS6D01G177400 chr2A 78.676 272 43 9 196 454 85287261 85287530 3.330000e-37 167.0
38 TraesCS6D01G177400 chr2A 82.424 165 27 2 290 454 61798096 61798258 5.610000e-30 143.0
39 TraesCS6D01G177400 chr3B 79.828 233 33 9 225 445 240342736 240342966 2.000000e-34 158.0
40 TraesCS6D01G177400 chr7D 83.478 115 17 2 4831 4943 548777015 548776901 7.350000e-19 106.0
41 TraesCS6D01G177400 chr7D 81.746 126 19 3 4821 4943 377813762 377813886 9.510000e-18 102.0
42 TraesCS6D01G177400 chr4A 83.200 125 11 8 4828 4944 703678304 703678182 7.350000e-19 106.0
43 TraesCS6D01G177400 chr5D 81.538 130 17 5 4819 4943 325963310 325963183 3.420000e-17 100.0
44 TraesCS6D01G177400 chr5D 100.000 28 0 0 469 496 174620106 174620079 1.000000e-02 52.8
45 TraesCS6D01G177400 chrUn 100.000 28 0 0 469 496 29524354 29524381 1.000000e-02 52.8
46 TraesCS6D01G177400 chr7B 100.000 28 0 0 469 496 126550034 126550007 1.000000e-02 52.8
47 TraesCS6D01G177400 chr5B 100.000 28 0 0 469 496 662809789 662809816 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G177400 chr6D 178002851 178008219 5368 True 3343.933333 9915 100.000000 1 5369 3 chr6D.!!$R2 5368
1 TraesCS6D01G177400 chr6B 295763800 295769347 5547 False 3694.000000 6929 90.508500 1 4882 2 chr6B.!!$F2 4881
2 TraesCS6D01G177400 chr6A 230705671 230710588 4917 True 2576.000000 5049 93.620333 3 4941 3 chr6A.!!$R5 4938
3 TraesCS6D01G177400 chr1B 391573542 391574506 964 False 228.000000 228 71.787000 2574 3541 1 chr1B.!!$F1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.249489 GGCGAAGTCATCATAGGCGT 60.249 55.000 0.00 0.0 0.00 5.68 F
654 1407 0.301687 CACCGATTCGATTCCAAGCG 59.698 55.000 7.83 0.0 39.51 4.68 F
1557 2364 0.033991 TCTCTACTTCCTCAGCGGCT 60.034 55.000 0.00 0.0 0.00 5.52 F
1689 2496 0.338467 TCCTTCGGAGATCAGGGGAA 59.662 55.000 0.00 0.0 35.35 3.97 F
2803 3694 1.827344 TCTCTTGCATCTCGTCATGGT 59.173 47.619 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 2166 0.944386 GCACCTGAAGACGAAAAGCA 59.056 50.000 0.00 0.0 0.00 3.91 R
1689 2496 1.598130 GTGGAAGCGTGTTGAGCCT 60.598 57.895 0.00 0.0 34.64 4.58 R
2803 3694 1.977854 ACACTCTGGTTCACCATGCTA 59.022 47.619 0.00 0.0 46.46 3.49 R
3838 4736 5.140454 AGATTCCAAAGCAAACCAGTTAGT 58.860 37.500 0.00 0.0 0.00 2.24 R
4948 5855 0.398098 TCCGGTAGGATCCCTGGTTC 60.398 60.000 8.55 0.0 42.75 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.023735 GCCCCCTGGTCTCCCATT 61.024 66.667 0.00 0.00 40.90 3.16
60 61 1.757699 GTAGAGACCCATGGGAGTCAC 59.242 57.143 38.07 22.41 38.96 3.67
65 66 0.909610 ACCCATGGGAGTCACGATGT 60.910 55.000 38.07 7.69 38.96 3.06
66 67 0.253044 CCCATGGGAGTCACGATGTT 59.747 55.000 28.27 0.00 37.50 2.71
67 68 1.340017 CCCATGGGAGTCACGATGTTT 60.340 52.381 28.27 0.00 37.50 2.83
89 90 1.231221 TTTTTGTCACGTCATCCCCG 58.769 50.000 0.00 0.00 0.00 5.73
126 127 0.658897 TCAGTTCGGCGGTCAAAAAC 59.341 50.000 7.21 2.52 0.00 2.43
175 176 1.675552 ACAACTCGACCCAAAACCAG 58.324 50.000 0.00 0.00 0.00 4.00
192 193 4.836125 ACCAGTACTGATGTGCAAAAAG 57.164 40.909 24.68 5.20 0.00 2.27
194 195 4.516698 ACCAGTACTGATGTGCAAAAAGAG 59.483 41.667 24.68 4.56 0.00 2.85
198 199 6.854892 CAGTACTGATGTGCAAAAAGAGAAAG 59.145 38.462 18.45 0.00 0.00 2.62
199 200 5.841957 ACTGATGTGCAAAAAGAGAAAGT 57.158 34.783 0.00 0.00 0.00 2.66
262 263 3.722147 GCACATACACTCACCTCTATGG 58.278 50.000 0.00 0.00 42.93 2.74
322 323 4.391216 GCCGACATATCATCTTGAGATTGG 59.609 45.833 0.00 0.00 31.21 3.16
340 341 0.249489 GGCGAAGTCATCATAGGCGT 60.249 55.000 0.00 0.00 0.00 5.68
367 368 2.879646 AGTCGACGAAGACATATCCTCC 59.120 50.000 10.46 0.00 43.24 4.30
376 378 6.323996 ACGAAGACATATCCTCCTATTGAACA 59.676 38.462 0.00 0.00 0.00 3.18
429 433 2.309136 AAAAATGCTAGCACCAGGGT 57.691 45.000 22.07 0.00 0.00 4.34
431 435 1.839424 AAATGCTAGCACCAGGGTTC 58.161 50.000 22.07 0.00 0.00 3.62
444 448 2.667199 GGTTCGAACCGTGGTGGG 60.667 66.667 30.33 0.00 44.64 4.61
449 453 2.351276 GAACCGTGGTGGGCTGAT 59.649 61.111 0.00 0.00 44.64 2.90
464 468 6.461509 GGTGGGCTGATAATAATGAAAGTTGG 60.462 42.308 0.00 0.00 0.00 3.77
465 469 6.096846 GTGGGCTGATAATAATGAAAGTTGGT 59.903 38.462 0.00 0.00 0.00 3.67
466 470 7.284489 GTGGGCTGATAATAATGAAAGTTGGTA 59.716 37.037 0.00 0.00 0.00 3.25
467 471 8.004215 TGGGCTGATAATAATGAAAGTTGGTAT 58.996 33.333 0.00 0.00 0.00 2.73
468 472 8.860088 GGGCTGATAATAATGAAAGTTGGTATT 58.140 33.333 0.00 0.00 0.00 1.89
469 473 9.899226 GGCTGATAATAATGAAAGTTGGTATTC 57.101 33.333 0.00 0.00 0.00 1.75
511 515 9.937175 GAGCATTTAGAACGCTCTTATATTTTT 57.063 29.630 0.00 0.00 46.86 1.94
556 560 8.997621 TTTGTTGACATGGTACTAGTATCTTC 57.002 34.615 14.21 8.44 0.00 2.87
557 561 7.956328 TGTTGACATGGTACTAGTATCTTCT 57.044 36.000 14.21 0.00 0.00 2.85
558 562 8.362464 TGTTGACATGGTACTAGTATCTTCTT 57.638 34.615 14.21 0.00 0.00 2.52
559 563 8.251026 TGTTGACATGGTACTAGTATCTTCTTG 58.749 37.037 14.21 8.91 0.00 3.02
560 564 6.806751 TGACATGGTACTAGTATCTTCTTGC 58.193 40.000 14.21 0.72 0.00 4.01
602 606 4.049186 CGTATGGCCGATTATATACAGCC 58.951 47.826 0.00 0.00 40.87 4.85
653 1406 1.369625 ACACCGATTCGATTCCAAGC 58.630 50.000 7.83 0.00 0.00 4.01
654 1407 0.301687 CACCGATTCGATTCCAAGCG 59.698 55.000 7.83 0.00 39.51 4.68
655 1408 1.934463 CCGATTCGATTCCAAGCGG 59.066 57.895 7.83 6.32 45.51 5.52
656 1409 1.498865 CCGATTCGATTCCAAGCGGG 61.499 60.000 12.12 0.00 46.68 6.13
657 1410 1.498865 CGATTCGATTCCAAGCGGGG 61.499 60.000 0.00 0.00 38.53 5.73
658 1411 1.786049 GATTCGATTCCAAGCGGGGC 61.786 60.000 0.00 0.00 38.53 5.80
824 1584 4.974721 CCACACCACACCAGGGGC 62.975 72.222 0.00 0.00 34.56 5.80
852 1612 1.956869 TCTTGGGCTTCTCCATCTCA 58.043 50.000 0.00 0.00 36.58 3.27
936 1696 1.883926 GTGGTGGCTGGTTCGTTTATT 59.116 47.619 0.00 0.00 0.00 1.40
1038 1798 2.800736 GCGATTGCGGCTTCCATT 59.199 55.556 0.00 0.00 38.16 3.16
1103 1863 5.977489 AAGTAGCCCAGATTTGTTTTACC 57.023 39.130 0.00 0.00 0.00 2.85
1225 1992 4.888239 TGGAACAAAAGACGGGTGATTTAA 59.112 37.500 0.00 0.00 31.92 1.52
1226 1993 5.360144 TGGAACAAAAGACGGGTGATTTAAA 59.640 36.000 0.00 0.00 31.92 1.52
1227 1994 5.688621 GGAACAAAAGACGGGTGATTTAAAC 59.311 40.000 0.00 0.00 0.00 2.01
1228 1995 6.459670 AACAAAAGACGGGTGATTTAAACT 57.540 33.333 0.00 0.00 0.00 2.66
1229 1996 5.827666 ACAAAAGACGGGTGATTTAAACTG 58.172 37.500 0.00 0.00 0.00 3.16
1230 1997 5.591067 ACAAAAGACGGGTGATTTAAACTGA 59.409 36.000 0.00 0.00 0.00 3.41
1232 1999 5.880054 AAGACGGGTGATTTAAACTGATG 57.120 39.130 0.00 0.00 0.00 3.07
1243 2028 8.275632 GTGATTTAAACTGATGCTTGTTTTTCC 58.724 33.333 0.00 0.00 37.53 3.13
1244 2029 8.203485 TGATTTAAACTGATGCTTGTTTTTCCT 58.797 29.630 0.00 0.00 37.53 3.36
1245 2030 8.962884 ATTTAAACTGATGCTTGTTTTTCCTT 57.037 26.923 0.00 0.00 37.53 3.36
1338 2145 9.569122 AAACTTGCTATCCTTTACTTTTACTCA 57.431 29.630 0.00 0.00 0.00 3.41
1341 2148 9.220767 CTTGCTATCCTTTACTTTTACTCAAGT 57.779 33.333 0.00 0.00 40.28 3.16
1359 2166 5.798132 TCAAGTCACAGATTAACAGAGCAT 58.202 37.500 0.00 0.00 0.00 3.79
1382 2189 2.325583 TTTCGTCTTCAGGTGCTGTT 57.674 45.000 0.00 0.00 32.61 3.16
1557 2364 0.033991 TCTCTACTTCCTCAGCGGCT 60.034 55.000 0.00 0.00 0.00 5.52
1640 2447 0.391130 GTATCGGCTTGGCTGTCACA 60.391 55.000 0.00 0.00 36.18 3.58
1689 2496 0.338467 TCCTTCGGAGATCAGGGGAA 59.662 55.000 0.00 0.00 35.35 3.97
1995 2878 3.334583 TTCACCTGGATTGCTACAGAC 57.665 47.619 0.00 0.00 36.86 3.51
2206 3091 4.991153 TTCATGTTGGTACTTTGCACAA 57.009 36.364 0.00 0.00 0.00 3.33
2287 3172 3.281727 TGACCTTGTTGACAAAGCTCT 57.718 42.857 0.00 0.00 35.15 4.09
2306 3191 5.777223 AGCTCTGATGAACTGTGGCTATATA 59.223 40.000 0.00 0.00 0.00 0.86
2428 3313 6.947464 AGATATAATGTTTGGGTATCCCTCG 58.053 40.000 6.38 0.00 45.70 4.63
2460 3345 9.965824 GATTTCACAATTCGGGTTTCAATATAT 57.034 29.630 0.00 0.00 0.00 0.86
2461 3346 9.748708 ATTTCACAATTCGGGTTTCAATATATG 57.251 29.630 0.00 0.00 0.00 1.78
2462 3347 7.873719 TCACAATTCGGGTTTCAATATATGT 57.126 32.000 0.00 0.00 0.00 2.29
2463 3348 8.287439 TCACAATTCGGGTTTCAATATATGTT 57.713 30.769 0.00 0.00 0.00 2.71
2464 3349 8.744652 TCACAATTCGGGTTTCAATATATGTTT 58.255 29.630 0.00 0.00 0.00 2.83
2465 3350 9.019764 CACAATTCGGGTTTCAATATATGTTTC 57.980 33.333 0.00 0.00 0.00 2.78
2466 3351 8.966868 ACAATTCGGGTTTCAATATATGTTTCT 58.033 29.630 0.00 0.00 0.00 2.52
2471 3356 9.893634 TCGGGTTTCAATATATGTTTCTAAAGA 57.106 29.630 0.00 0.00 0.00 2.52
2523 3408 5.654650 AGTGTTGGTAAATTTCAGTTGGTGA 59.345 36.000 0.00 0.00 0.00 4.02
2803 3694 1.827344 TCTCTTGCATCTCGTCATGGT 59.173 47.619 0.00 0.00 0.00 3.55
3873 4771 5.182570 TGCTTTGGAATCTCAATTCTCAGTG 59.817 40.000 0.00 0.00 40.99 3.66
4121 5019 1.283321 AGAGATTTTCCCCACCAGAGC 59.717 52.381 0.00 0.00 0.00 4.09
4888 5795 5.994054 AGATTGCAATGCGAACTAGATACAT 59.006 36.000 18.59 0.00 0.00 2.29
4941 5848 4.629634 TCACACATTTTGCTCCGTATGTAG 59.370 41.667 0.00 0.00 30.53 2.74
4942 5849 4.391830 CACACATTTTGCTCCGTATGTAGT 59.608 41.667 0.00 0.00 30.53 2.73
4943 5850 5.001232 ACACATTTTGCTCCGTATGTAGTT 58.999 37.500 0.00 0.00 30.53 2.24
4944 5851 5.106712 ACACATTTTGCTCCGTATGTAGTTG 60.107 40.000 0.00 0.00 30.53 3.16
4945 5852 4.394920 ACATTTTGCTCCGTATGTAGTTGG 59.605 41.667 0.00 0.00 29.93 3.77
4946 5853 3.688694 TTTGCTCCGTATGTAGTTGGT 57.311 42.857 0.00 0.00 0.00 3.67
4947 5854 4.804868 TTTGCTCCGTATGTAGTTGGTA 57.195 40.909 0.00 0.00 0.00 3.25
4948 5855 4.380841 TTGCTCCGTATGTAGTTGGTAG 57.619 45.455 0.00 0.00 0.00 3.18
4949 5856 3.623703 TGCTCCGTATGTAGTTGGTAGA 58.376 45.455 0.00 0.00 0.00 2.59
4950 5857 4.018490 TGCTCCGTATGTAGTTGGTAGAA 58.982 43.478 0.00 0.00 0.00 2.10
4951 5858 4.142315 TGCTCCGTATGTAGTTGGTAGAAC 60.142 45.833 0.00 0.00 0.00 3.01
4952 5859 4.735873 GCTCCGTATGTAGTTGGTAGAACC 60.736 50.000 0.00 0.00 39.22 3.62
4963 5870 3.042059 TGGTAGAACCAGGGATCCTAC 57.958 52.381 12.58 4.13 44.79 3.18
4964 5871 2.327373 GGTAGAACCAGGGATCCTACC 58.673 57.143 12.58 9.88 38.42 3.18
4965 5872 1.962100 GTAGAACCAGGGATCCTACCG 59.038 57.143 12.58 0.00 29.64 4.02
4966 5873 0.398664 AGAACCAGGGATCCTACCGG 60.399 60.000 12.58 0.00 29.64 5.28
4967 5874 0.398098 GAACCAGGGATCCTACCGGA 60.398 60.000 9.46 0.00 45.16 5.14
4968 5875 0.690077 AACCAGGGATCCTACCGGAC 60.690 60.000 9.46 0.00 43.51 4.79
4969 5876 1.837499 CCAGGGATCCTACCGGACC 60.837 68.421 9.46 1.06 43.51 4.46
4970 5877 1.233369 CAGGGATCCTACCGGACCT 59.767 63.158 9.46 0.36 43.51 3.85
4971 5878 1.115930 CAGGGATCCTACCGGACCTG 61.116 65.000 9.46 9.92 43.29 4.00
4972 5879 2.508751 GGGATCCTACCGGACCTGC 61.509 68.421 9.46 0.00 43.51 4.85
4973 5880 1.457831 GGATCCTACCGGACCTGCT 60.458 63.158 9.46 0.00 43.51 4.24
4974 5881 1.465200 GGATCCTACCGGACCTGCTC 61.465 65.000 9.46 0.00 43.51 4.26
4975 5882 0.468400 GATCCTACCGGACCTGCTCT 60.468 60.000 9.46 0.00 43.51 4.09
4976 5883 0.757188 ATCCTACCGGACCTGCTCTG 60.757 60.000 9.46 0.00 43.51 3.35
4977 5884 1.682684 CCTACCGGACCTGCTCTGT 60.683 63.158 9.46 0.00 0.00 3.41
4978 5885 0.395311 CCTACCGGACCTGCTCTGTA 60.395 60.000 9.46 0.00 0.00 2.74
4979 5886 1.025812 CTACCGGACCTGCTCTGTAG 58.974 60.000 9.46 0.00 0.00 2.74
4980 5887 0.395311 TACCGGACCTGCTCTGTAGG 60.395 60.000 9.46 0.22 41.23 3.18
4987 5894 2.180276 ACCTGCTCTGTAGGTTGTAGG 58.820 52.381 1.54 0.00 46.02 3.18
4988 5895 1.482593 CCTGCTCTGTAGGTTGTAGGG 59.517 57.143 0.00 0.00 30.75 3.53
4989 5896 1.482593 CTGCTCTGTAGGTTGTAGGGG 59.517 57.143 0.00 0.00 0.00 4.79
4990 5897 1.078159 TGCTCTGTAGGTTGTAGGGGA 59.922 52.381 0.00 0.00 0.00 4.81
4991 5898 2.185387 GCTCTGTAGGTTGTAGGGGAA 58.815 52.381 0.00 0.00 0.00 3.97
4992 5899 2.168728 GCTCTGTAGGTTGTAGGGGAAG 59.831 54.545 0.00 0.00 0.00 3.46
4993 5900 2.766828 CTCTGTAGGTTGTAGGGGAAGG 59.233 54.545 0.00 0.00 0.00 3.46
4994 5901 2.384375 TCTGTAGGTTGTAGGGGAAGGA 59.616 50.000 0.00 0.00 0.00 3.36
4995 5902 3.013648 TCTGTAGGTTGTAGGGGAAGGAT 59.986 47.826 0.00 0.00 0.00 3.24
4996 5903 3.112263 TGTAGGTTGTAGGGGAAGGATG 58.888 50.000 0.00 0.00 0.00 3.51
4997 5904 1.596496 AGGTTGTAGGGGAAGGATGG 58.404 55.000 0.00 0.00 0.00 3.51
4998 5905 1.082194 AGGTTGTAGGGGAAGGATGGA 59.918 52.381 0.00 0.00 0.00 3.41
4999 5906 1.490910 GGTTGTAGGGGAAGGATGGAG 59.509 57.143 0.00 0.00 0.00 3.86
5000 5907 1.490910 GTTGTAGGGGAAGGATGGAGG 59.509 57.143 0.00 0.00 0.00 4.30
5001 5908 1.023719 TGTAGGGGAAGGATGGAGGA 58.976 55.000 0.00 0.00 0.00 3.71
5002 5909 1.062121 TGTAGGGGAAGGATGGAGGAG 60.062 57.143 0.00 0.00 0.00 3.69
5003 5910 0.568192 TAGGGGAAGGATGGAGGAGG 59.432 60.000 0.00 0.00 0.00 4.30
5004 5911 1.772156 GGGGAAGGATGGAGGAGGG 60.772 68.421 0.00 0.00 0.00 4.30
5005 5912 2.456443 GGGAAGGATGGAGGAGGGC 61.456 68.421 0.00 0.00 0.00 5.19
5006 5913 2.812619 GGAAGGATGGAGGAGGGCG 61.813 68.421 0.00 0.00 0.00 6.13
5007 5914 3.468326 GAAGGATGGAGGAGGGCGC 62.468 68.421 0.00 0.00 0.00 6.53
5055 5962 4.253257 GCCGTCGCGTAGGAGGAG 62.253 72.222 22.63 0.06 0.00 3.69
5056 5963 3.584052 CCGTCGCGTAGGAGGAGG 61.584 72.222 15.51 1.51 0.00 4.30
5057 5964 2.513204 CGTCGCGTAGGAGGAGGA 60.513 66.667 5.77 0.00 0.00 3.71
5058 5965 1.892862 CGTCGCGTAGGAGGAGGAT 60.893 63.158 5.77 0.00 0.00 3.24
5059 5966 1.655329 GTCGCGTAGGAGGAGGATG 59.345 63.158 5.77 0.00 0.00 3.51
5060 5967 1.528542 TCGCGTAGGAGGAGGATGG 60.529 63.158 5.77 0.00 0.00 3.51
5061 5968 2.737830 GCGTAGGAGGAGGATGGC 59.262 66.667 0.00 0.00 0.00 4.40
5062 5969 3.043419 CGTAGGAGGAGGATGGCG 58.957 66.667 0.00 0.00 0.00 5.69
5063 5970 2.565645 CGTAGGAGGAGGATGGCGG 61.566 68.421 0.00 0.00 0.00 6.13
5064 5971 2.524394 TAGGAGGAGGATGGCGGC 60.524 66.667 0.00 0.00 0.00 6.53
5084 5991 4.222847 CGGCTAGGGTTCCGGCTC 62.223 72.222 0.00 0.00 41.82 4.70
5085 5992 3.862991 GGCTAGGGTTCCGGCTCC 61.863 72.222 0.00 0.53 0.00 4.70
5086 5993 2.764547 GCTAGGGTTCCGGCTCCT 60.765 66.667 13.24 13.24 34.85 3.69
5087 5994 2.368011 GCTAGGGTTCCGGCTCCTT 61.368 63.158 13.78 9.38 32.46 3.36
5088 5995 1.911702 GCTAGGGTTCCGGCTCCTTT 61.912 60.000 13.78 6.50 32.46 3.11
5089 5996 0.107654 CTAGGGTTCCGGCTCCTTTG 60.108 60.000 13.78 5.03 32.46 2.77
5090 5997 1.559065 TAGGGTTCCGGCTCCTTTGG 61.559 60.000 13.78 0.00 32.46 3.28
5091 5998 2.361230 GGTTCCGGCTCCTTTGGG 60.361 66.667 0.00 0.00 0.00 4.12
5092 5999 2.754375 GTTCCGGCTCCTTTGGGA 59.246 61.111 0.00 0.00 39.70 4.37
5101 6008 4.676951 CCTTTGGGAGCCGGGCAA 62.677 66.667 23.09 3.24 33.58 4.52
5102 6009 2.362889 CTTTGGGAGCCGGGCAAT 60.363 61.111 23.09 0.00 0.00 3.56
5103 6010 1.077068 CTTTGGGAGCCGGGCAATA 60.077 57.895 23.09 1.15 0.00 1.90
5104 6011 1.077068 TTTGGGAGCCGGGCAATAG 60.077 57.895 23.09 0.00 0.00 1.73
5105 6012 2.566111 TTTGGGAGCCGGGCAATAGG 62.566 60.000 23.09 0.00 0.00 2.57
5106 6013 4.271016 GGGAGCCGGGCAATAGGG 62.271 72.222 23.09 0.00 0.00 3.53
5107 6014 3.168528 GGAGCCGGGCAATAGGGA 61.169 66.667 23.09 0.00 0.00 4.20
5108 6015 2.529744 GGAGCCGGGCAATAGGGAT 61.530 63.158 23.09 0.00 0.00 3.85
5109 6016 1.198759 GGAGCCGGGCAATAGGGATA 61.199 60.000 23.09 0.00 0.00 2.59
5110 6017 0.690762 GAGCCGGGCAATAGGGATAA 59.309 55.000 23.09 0.00 0.00 1.75
5111 6018 1.282157 GAGCCGGGCAATAGGGATAAT 59.718 52.381 23.09 0.00 0.00 1.28
5112 6019 2.504175 GAGCCGGGCAATAGGGATAATA 59.496 50.000 23.09 0.00 0.00 0.98
5113 6020 2.916934 AGCCGGGCAATAGGGATAATAA 59.083 45.455 23.09 0.00 0.00 1.40
5114 6021 3.527665 AGCCGGGCAATAGGGATAATAAT 59.472 43.478 23.09 0.00 0.00 1.28
5115 6022 4.724798 AGCCGGGCAATAGGGATAATAATA 59.275 41.667 23.09 0.00 0.00 0.98
5116 6023 5.372661 AGCCGGGCAATAGGGATAATAATAT 59.627 40.000 23.09 0.00 0.00 1.28
5117 6024 6.068670 GCCGGGCAATAGGGATAATAATATT 58.931 40.000 15.62 0.00 0.00 1.28
5118 6025 6.206829 GCCGGGCAATAGGGATAATAATATTC 59.793 42.308 15.62 0.00 0.00 1.75
5119 6026 7.518188 CCGGGCAATAGGGATAATAATATTCT 58.482 38.462 0.00 0.00 0.00 2.40
5120 6027 7.998964 CCGGGCAATAGGGATAATAATATTCTT 59.001 37.037 0.00 0.00 0.00 2.52
5147 6054 9.914131 ATTGCTTAATTCCAAAAAGAGTCTTAC 57.086 29.630 5.65 0.00 0.00 2.34
5148 6055 8.458573 TGCTTAATTCCAAAAAGAGTCTTACA 57.541 30.769 5.65 0.00 0.00 2.41
5149 6056 8.567948 TGCTTAATTCCAAAAAGAGTCTTACAG 58.432 33.333 5.65 0.00 0.00 2.74
5150 6057 7.539022 GCTTAATTCCAAAAAGAGTCTTACAGC 59.461 37.037 5.65 0.00 0.00 4.40
5151 6058 5.966742 ATTCCAAAAAGAGTCTTACAGCC 57.033 39.130 5.65 0.00 0.00 4.85
5152 6059 4.706842 TCCAAAAAGAGTCTTACAGCCT 57.293 40.909 5.65 0.00 0.00 4.58
5153 6060 5.818678 TCCAAAAAGAGTCTTACAGCCTA 57.181 39.130 5.65 0.00 0.00 3.93
5154 6061 6.374417 TCCAAAAAGAGTCTTACAGCCTAT 57.626 37.500 5.65 0.00 0.00 2.57
5155 6062 7.490657 TCCAAAAAGAGTCTTACAGCCTATA 57.509 36.000 5.65 0.00 0.00 1.31
5156 6063 8.090788 TCCAAAAAGAGTCTTACAGCCTATAT 57.909 34.615 5.65 0.00 0.00 0.86
5157 6064 8.548877 TCCAAAAAGAGTCTTACAGCCTATATT 58.451 33.333 5.65 0.00 0.00 1.28
5158 6065 9.178758 CCAAAAAGAGTCTTACAGCCTATATTT 57.821 33.333 5.65 0.00 0.00 1.40
5205 6112 9.462606 AAGAATTAACCTAAGATAACTTGTGGG 57.537 33.333 9.98 5.92 37.53 4.61
5206 6113 7.556635 AGAATTAACCTAAGATAACTTGTGGGC 59.443 37.037 9.98 0.00 37.53 5.36
5207 6114 4.929146 AACCTAAGATAACTTGTGGGCT 57.071 40.909 9.98 0.00 37.53 5.19
5208 6115 7.499200 TTAACCTAAGATAACTTGTGGGCTA 57.501 36.000 9.98 1.68 37.53 3.93
5209 6116 6.382919 AACCTAAGATAACTTGTGGGCTAA 57.617 37.500 9.98 0.00 37.53 3.09
5210 6117 5.990668 ACCTAAGATAACTTGTGGGCTAAG 58.009 41.667 9.98 0.00 37.53 2.18
5211 6118 5.724854 ACCTAAGATAACTTGTGGGCTAAGA 59.275 40.000 9.98 0.00 37.53 2.10
5212 6119 6.387220 ACCTAAGATAACTTGTGGGCTAAGAT 59.613 38.462 9.98 0.00 37.53 2.40
5213 6120 7.092399 ACCTAAGATAACTTGTGGGCTAAGATT 60.092 37.037 9.98 0.00 37.53 2.40
5214 6121 7.227512 CCTAAGATAACTTGTGGGCTAAGATTG 59.772 40.741 0.00 0.00 37.53 2.67
5215 6122 4.884164 AGATAACTTGTGGGCTAAGATTGC 59.116 41.667 0.00 0.00 0.00 3.56
5216 6123 7.582275 AAGATAACTTGTGGGCTAAGATTGCC 61.582 42.308 0.00 0.00 41.08 4.52
5221 6128 3.827634 GGCTAAGATTGCCCGGTG 58.172 61.111 0.00 0.00 44.32 4.94
5222 6129 1.823899 GGCTAAGATTGCCCGGTGG 60.824 63.158 0.00 0.00 44.32 4.61
5232 6139 2.766651 CCCGGTGGGCCTAGCTAA 60.767 66.667 16.80 0.00 35.35 3.09
5233 6140 2.372074 CCCGGTGGGCCTAGCTAAA 61.372 63.158 16.80 0.00 35.35 1.85
5234 6141 1.153229 CCGGTGGGCCTAGCTAAAC 60.153 63.158 16.80 0.00 0.00 2.01
5235 6142 1.153229 CGGTGGGCCTAGCTAAACC 60.153 63.158 16.80 0.14 0.00 3.27
5236 6143 1.153229 GGTGGGCCTAGCTAAACCG 60.153 63.158 11.59 0.00 0.00 4.44
5237 6144 1.153229 GTGGGCCTAGCTAAACCGG 60.153 63.158 4.53 0.00 0.00 5.28
5238 6145 2.203167 GGGCCTAGCTAAACCGGC 60.203 66.667 12.25 12.25 41.75 6.13
5240 6147 2.587889 GCCTAGCTAAACCGGCCA 59.412 61.111 10.00 0.00 36.56 5.36
5241 6148 1.148498 GCCTAGCTAAACCGGCCAT 59.852 57.895 10.00 0.00 36.56 4.40
5242 6149 0.395312 GCCTAGCTAAACCGGCCATA 59.605 55.000 10.00 0.00 36.56 2.74
5243 6150 1.202722 GCCTAGCTAAACCGGCCATAA 60.203 52.381 10.00 0.00 36.56 1.90
5244 6151 2.490991 CCTAGCTAAACCGGCCATAAC 58.509 52.381 0.00 0.00 0.00 1.89
5245 6152 2.158871 CCTAGCTAAACCGGCCATAACA 60.159 50.000 0.00 0.00 0.00 2.41
5246 6153 1.746470 AGCTAAACCGGCCATAACAC 58.254 50.000 0.00 0.00 0.00 3.32
5247 6154 1.280998 AGCTAAACCGGCCATAACACT 59.719 47.619 0.00 0.00 0.00 3.55
5248 6155 2.089201 GCTAAACCGGCCATAACACTT 58.911 47.619 0.00 0.00 0.00 3.16
5249 6156 2.096980 GCTAAACCGGCCATAACACTTC 59.903 50.000 0.00 0.00 0.00 3.01
5250 6157 2.579410 AAACCGGCCATAACACTTCT 57.421 45.000 0.00 0.00 0.00 2.85
5251 6158 2.109425 AACCGGCCATAACACTTCTC 57.891 50.000 0.00 0.00 0.00 2.87
5252 6159 0.252197 ACCGGCCATAACACTTCTCC 59.748 55.000 0.00 0.00 0.00 3.71
5253 6160 0.463833 CCGGCCATAACACTTCTCCC 60.464 60.000 2.24 0.00 0.00 4.30
5254 6161 0.463833 CGGCCATAACACTTCTCCCC 60.464 60.000 2.24 0.00 0.00 4.81
5255 6162 0.463833 GGCCATAACACTTCTCCCCG 60.464 60.000 0.00 0.00 0.00 5.73
5256 6163 1.095807 GCCATAACACTTCTCCCCGC 61.096 60.000 0.00 0.00 0.00 6.13
5257 6164 0.463833 CCATAACACTTCTCCCCGCC 60.464 60.000 0.00 0.00 0.00 6.13
5258 6165 0.541863 CATAACACTTCTCCCCGCCT 59.458 55.000 0.00 0.00 0.00 5.52
5259 6166 0.541863 ATAACACTTCTCCCCGCCTG 59.458 55.000 0.00 0.00 0.00 4.85
5260 6167 2.180159 TAACACTTCTCCCCGCCTGC 62.180 60.000 0.00 0.00 0.00 4.85
5261 6168 4.020617 CACTTCTCCCCGCCTGCA 62.021 66.667 0.00 0.00 0.00 4.41
5262 6169 4.021925 ACTTCTCCCCGCCTGCAC 62.022 66.667 0.00 0.00 0.00 4.57
5263 6170 4.020617 CTTCTCCCCGCCTGCACA 62.021 66.667 0.00 0.00 0.00 4.57
5264 6171 3.551496 CTTCTCCCCGCCTGCACAA 62.551 63.158 0.00 0.00 0.00 3.33
5265 6172 3.126703 TTCTCCCCGCCTGCACAAA 62.127 57.895 0.00 0.00 0.00 2.83
5266 6173 3.365265 CTCCCCGCCTGCACAAAC 61.365 66.667 0.00 0.00 0.00 2.93
5267 6174 4.196778 TCCCCGCCTGCACAAACA 62.197 61.111 0.00 0.00 0.00 2.83
5268 6175 3.673484 CCCCGCCTGCACAAACAG 61.673 66.667 0.00 0.00 37.42 3.16
5269 6176 4.347453 CCCGCCTGCACAAACAGC 62.347 66.667 0.00 0.00 36.29 4.40
5270 6177 3.289834 CCGCCTGCACAAACAGCT 61.290 61.111 0.00 0.00 36.29 4.24
5271 6178 2.253452 CGCCTGCACAAACAGCTC 59.747 61.111 0.00 0.00 36.29 4.09
5272 6179 2.253452 GCCTGCACAAACAGCTCG 59.747 61.111 0.00 0.00 36.29 5.03
5273 6180 2.546494 GCCTGCACAAACAGCTCGT 61.546 57.895 0.00 0.00 36.29 4.18
5274 6181 1.571460 CCTGCACAAACAGCTCGTC 59.429 57.895 0.00 0.00 36.29 4.20
5275 6182 1.571460 CTGCACAAACAGCTCGTCC 59.429 57.895 0.00 0.00 0.00 4.79
5276 6183 0.882042 CTGCACAAACAGCTCGTCCT 60.882 55.000 0.00 0.00 0.00 3.85
5277 6184 0.880278 TGCACAAACAGCTCGTCCTC 60.880 55.000 0.00 0.00 0.00 3.71
5278 6185 1.891060 GCACAAACAGCTCGTCCTCG 61.891 60.000 0.00 0.00 38.55 4.63
5279 6186 0.318699 CACAAACAGCTCGTCCTCGA 60.319 55.000 0.00 0.00 44.12 4.04
5288 6195 2.478989 TCGTCCTCGAGCTGTAAGG 58.521 57.895 6.99 0.00 41.35 2.69
5297 6204 4.320910 GCTGTAAGGTGGGGAAGC 57.679 61.111 0.00 0.00 0.00 3.86
5298 6205 1.745489 GCTGTAAGGTGGGGAAGCG 60.745 63.158 0.00 0.00 0.00 4.68
5299 6206 1.745489 CTGTAAGGTGGGGAAGCGC 60.745 63.158 0.00 0.00 0.00 5.92
5300 6207 2.185310 CTGTAAGGTGGGGAAGCGCT 62.185 60.000 2.64 2.64 0.00 5.92
5301 6208 1.002502 GTAAGGTGGGGAAGCGCTT 60.003 57.895 25.35 25.35 0.00 4.68
5302 6209 1.002624 TAAGGTGGGGAAGCGCTTG 60.003 57.895 30.47 0.00 0.00 4.01
5308 6215 4.103103 GGGAAGCGCTTGCGGAAC 62.103 66.667 31.27 16.44 45.69 3.62
5309 6216 3.050275 GGAAGCGCTTGCGGAACT 61.050 61.111 30.47 0.00 45.69 3.01
5310 6217 2.476499 GAAGCGCTTGCGGAACTC 59.524 61.111 30.47 6.54 45.69 3.01
5311 6218 3.028366 GAAGCGCTTGCGGAACTCC 62.028 63.158 30.47 5.56 45.69 3.85
5312 6219 3.537206 AAGCGCTTGCGGAACTCCT 62.537 57.895 24.40 0.00 45.69 3.69
5313 6220 3.491652 GCGCTTGCGGAACTCCTC 61.492 66.667 16.79 0.00 0.00 3.71
5314 6221 3.181967 CGCTTGCGGAACTCCTCG 61.182 66.667 7.16 0.00 0.00 4.63
5315 6222 2.261671 GCTTGCGGAACTCCTCGA 59.738 61.111 0.00 0.00 0.00 4.04
5316 6223 1.807573 GCTTGCGGAACTCCTCGAG 60.808 63.158 5.13 5.13 35.74 4.04
5317 6224 1.153745 CTTGCGGAACTCCTCGAGG 60.154 63.158 26.32 26.32 33.35 4.63
5318 6225 3.296709 TTGCGGAACTCCTCGAGGC 62.297 63.158 27.39 13.37 33.35 4.70
5319 6226 4.856607 GCGGAACTCCTCGAGGCG 62.857 72.222 27.39 23.55 33.35 5.52
5320 6227 3.132139 CGGAACTCCTCGAGGCGA 61.132 66.667 27.68 10.65 33.35 5.54
5321 6228 2.482333 CGGAACTCCTCGAGGCGAT 61.482 63.158 27.68 16.57 34.61 4.58
5322 6229 1.360911 GGAACTCCTCGAGGCGATC 59.639 63.158 27.68 23.64 34.61 3.69
5323 6230 1.384989 GGAACTCCTCGAGGCGATCA 61.385 60.000 27.68 9.07 34.61 2.92
5324 6231 0.456221 GAACTCCTCGAGGCGATCAA 59.544 55.000 27.68 8.30 34.61 2.57
5325 6232 0.173708 AACTCCTCGAGGCGATCAAC 59.826 55.000 27.68 0.00 34.61 3.18
5326 6233 1.066587 CTCCTCGAGGCGATCAACC 59.933 63.158 27.39 0.00 34.61 3.77
5327 6234 1.667154 CTCCTCGAGGCGATCAACCA 61.667 60.000 27.39 5.00 34.61 3.67
5328 6235 1.227089 CCTCGAGGCGATCAACCAG 60.227 63.158 20.67 0.00 34.61 4.00
5329 6236 1.880340 CTCGAGGCGATCAACCAGC 60.880 63.158 3.91 0.00 34.61 4.85
5330 6237 3.257561 CGAGGCGATCAACCAGCG 61.258 66.667 4.68 4.14 0.00 5.18
5331 6238 2.125512 GAGGCGATCAACCAGCGT 60.126 61.111 4.68 0.00 0.00 5.07
5332 6239 2.125512 AGGCGATCAACCAGCGTC 60.126 61.111 4.68 0.00 0.00 5.19
5333 6240 2.434185 GGCGATCAACCAGCGTCA 60.434 61.111 0.00 0.00 0.00 4.35
5334 6241 2.032634 GGCGATCAACCAGCGTCAA 61.033 57.895 0.00 0.00 0.00 3.18
5335 6242 1.573829 GGCGATCAACCAGCGTCAAA 61.574 55.000 0.00 0.00 0.00 2.69
5336 6243 0.452784 GCGATCAACCAGCGTCAAAC 60.453 55.000 0.00 0.00 0.00 2.93
5337 6244 0.865111 CGATCAACCAGCGTCAAACA 59.135 50.000 0.00 0.00 0.00 2.83
5338 6245 1.398451 CGATCAACCAGCGTCAAACAC 60.398 52.381 0.00 0.00 0.00 3.32
5339 6246 0.951558 ATCAACCAGCGTCAAACACC 59.048 50.000 0.00 0.00 0.00 4.16
5340 6247 0.107410 TCAACCAGCGTCAAACACCT 60.107 50.000 0.00 0.00 0.00 4.00
5341 6248 0.738389 CAACCAGCGTCAAACACCTT 59.262 50.000 0.00 0.00 0.00 3.50
5342 6249 1.021968 AACCAGCGTCAAACACCTTC 58.978 50.000 0.00 0.00 0.00 3.46
5343 6250 0.180406 ACCAGCGTCAAACACCTTCT 59.820 50.000 0.00 0.00 0.00 2.85
5344 6251 0.868406 CCAGCGTCAAACACCTTCTC 59.132 55.000 0.00 0.00 0.00 2.87
5345 6252 0.508641 CAGCGTCAAACACCTTCTCG 59.491 55.000 0.00 0.00 0.00 4.04
5346 6253 0.387929 AGCGTCAAACACCTTCTCGA 59.612 50.000 0.00 0.00 0.00 4.04
5347 6254 0.507358 GCGTCAAACACCTTCTCGAC 59.493 55.000 0.00 0.00 0.00 4.20
5348 6255 1.847818 CGTCAAACACCTTCTCGACA 58.152 50.000 0.00 0.00 0.00 4.35
5349 6256 1.787155 CGTCAAACACCTTCTCGACAG 59.213 52.381 0.00 0.00 0.00 3.51
5350 6257 1.527311 GTCAAACACCTTCTCGACAGC 59.473 52.381 0.00 0.00 0.00 4.40
5351 6258 1.412710 TCAAACACCTTCTCGACAGCT 59.587 47.619 0.00 0.00 0.00 4.24
5352 6259 1.528586 CAAACACCTTCTCGACAGCTG 59.471 52.381 13.48 13.48 0.00 4.24
5353 6260 0.034059 AACACCTTCTCGACAGCTGG 59.966 55.000 19.93 0.36 0.00 4.85
5354 6261 1.079543 CACCTTCTCGACAGCTGGG 60.080 63.158 19.93 10.03 0.00 4.45
5355 6262 2.286523 ACCTTCTCGACAGCTGGGG 61.287 63.158 19.93 9.38 0.00 4.96
5356 6263 2.125350 CTTCTCGACAGCTGGGGC 60.125 66.667 19.93 6.04 39.06 5.80
5357 6264 3.997064 CTTCTCGACAGCTGGGGCG 62.997 68.421 19.93 17.93 44.37 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.202758 CCAAGTGCCAACTACTCCACA 60.203 52.381 0.00 0.00 34.77 4.17
89 90 3.406595 ATAAGTGGGGCCTGCTCGC 62.407 63.158 0.84 0.00 0.00 5.03
95 96 0.541863 CGAACTGATAAGTGGGGCCT 59.458 55.000 0.84 0.00 0.00 5.19
105 106 2.459060 TTTTGACCGCCGAACTGATA 57.541 45.000 0.00 0.00 0.00 2.15
126 127 3.720920 CGCACTAATTCTCGTTTGAACCG 60.721 47.826 0.00 0.00 0.00 4.44
175 176 6.729187 ACTTTCTCTTTTTGCACATCAGTAC 58.271 36.000 0.00 0.00 0.00 2.73
262 263 2.736682 GGGTGTGCGTGTATGCGTC 61.737 63.158 0.00 0.00 37.81 5.19
322 323 1.132588 GACGCCTATGATGACTTCGC 58.867 55.000 0.00 0.00 0.00 4.70
356 357 6.233434 TGCATGTTCAATAGGAGGATATGTC 58.767 40.000 0.00 0.00 0.00 3.06
359 360 6.111382 CGATGCATGTTCAATAGGAGGATAT 58.889 40.000 2.46 0.00 0.00 1.63
367 368 1.069703 CCGGCGATGCATGTTCAATAG 60.070 52.381 9.30 0.00 0.00 1.73
376 378 0.466189 AGGAATTTCCGGCGATGCAT 60.466 50.000 9.30 0.00 42.75 3.96
429 433 3.552384 AGCCCACCACGGTTCGAA 61.552 61.111 0.00 0.00 0.00 3.71
431 435 2.233605 TATCAGCCCACCACGGTTCG 62.234 60.000 0.00 0.00 0.00 3.95
510 514 7.013834 ACAAATTGGTACTCCCTCCATAAAAA 58.986 34.615 0.00 0.00 33.50 1.94
511 515 6.557568 ACAAATTGGTACTCCCTCCATAAAA 58.442 36.000 0.00 0.00 33.50 1.52
512 516 6.147437 ACAAATTGGTACTCCCTCCATAAA 57.853 37.500 0.00 0.00 33.50 1.40
513 517 5.789574 ACAAATTGGTACTCCCTCCATAA 57.210 39.130 0.00 0.00 33.50 1.90
514 518 5.251932 TCAACAAATTGGTACTCCCTCCATA 59.748 40.000 0.00 0.00 36.39 2.74
515 519 4.044065 TCAACAAATTGGTACTCCCTCCAT 59.956 41.667 0.00 0.00 36.39 3.41
516 520 3.396276 TCAACAAATTGGTACTCCCTCCA 59.604 43.478 0.00 0.00 36.39 3.86
517 521 3.756963 GTCAACAAATTGGTACTCCCTCC 59.243 47.826 0.00 0.00 36.39 4.30
518 522 4.394729 TGTCAACAAATTGGTACTCCCTC 58.605 43.478 0.00 0.00 36.39 4.30
519 523 4.447138 TGTCAACAAATTGGTACTCCCT 57.553 40.909 0.00 0.00 36.39 4.20
520 524 4.082245 CCATGTCAACAAATTGGTACTCCC 60.082 45.833 0.00 0.00 36.39 4.30
521 525 4.522789 ACCATGTCAACAAATTGGTACTCC 59.477 41.667 5.34 0.00 35.61 3.85
522 526 5.705609 ACCATGTCAACAAATTGGTACTC 57.294 39.130 5.34 0.00 35.61 2.59
523 527 6.569179 GTACCATGTCAACAAATTGGTACT 57.431 37.500 24.34 3.92 46.38 2.73
533 537 7.956328 AGAAGATACTAGTACCATGTCAACA 57.044 36.000 4.31 0.00 0.00 3.33
556 560 5.569059 GTGATTTCCACGACTTAATTGCAAG 59.431 40.000 4.94 0.00 35.86 4.01
557 561 5.457140 GTGATTTCCACGACTTAATTGCAA 58.543 37.500 0.00 0.00 35.86 4.08
558 562 5.041951 GTGATTTCCACGACTTAATTGCA 57.958 39.130 0.00 0.00 35.86 4.08
657 1410 0.874390 TGACGACAAAAGGCTGATGC 59.126 50.000 0.00 0.00 38.76 3.91
658 1411 2.146342 AGTGACGACAAAAGGCTGATG 58.854 47.619 0.00 0.00 0.00 3.07
852 1612 4.430441 AGTAGAGAACCAACCAAGGAGAT 58.570 43.478 0.00 0.00 0.00 2.75
936 1696 2.199652 CGCAGAAACCCAGCCCAAA 61.200 57.895 0.00 0.00 0.00 3.28
1038 1798 2.361992 CCCTGCAGCAGATTGCCA 60.362 61.111 24.90 0.00 46.52 4.92
1103 1863 2.233922 ACCGGAGTGATCTAACAAGGTG 59.766 50.000 9.46 0.00 0.00 4.00
1199 1966 2.685897 TCACCCGTCTTTTGTTCCAAAG 59.314 45.455 0.00 0.00 0.00 2.77
1225 1992 4.651045 AGGAAGGAAAAACAAGCATCAGTT 59.349 37.500 0.00 0.00 0.00 3.16
1226 1993 4.218312 AGGAAGGAAAAACAAGCATCAGT 58.782 39.130 0.00 0.00 0.00 3.41
1227 1994 4.861102 AGGAAGGAAAAACAAGCATCAG 57.139 40.909 0.00 0.00 0.00 2.90
1228 1995 6.723298 TTTAGGAAGGAAAAACAAGCATCA 57.277 33.333 0.00 0.00 0.00 3.07
1229 1996 6.146184 GCTTTTAGGAAGGAAAAACAAGCATC 59.854 38.462 0.00 0.00 0.00 3.91
1230 1997 5.991606 GCTTTTAGGAAGGAAAAACAAGCAT 59.008 36.000 0.00 0.00 0.00 3.79
1232 1999 5.356426 TGCTTTTAGGAAGGAAAAACAAGC 58.644 37.500 0.00 0.00 0.00 4.01
1243 2028 3.187842 GGTACGGTGTTGCTTTTAGGAAG 59.812 47.826 0.00 0.00 0.00 3.46
1244 2029 3.140623 GGTACGGTGTTGCTTTTAGGAA 58.859 45.455 0.00 0.00 0.00 3.36
1245 2030 2.104451 TGGTACGGTGTTGCTTTTAGGA 59.896 45.455 0.00 0.00 0.00 2.94
1338 2145 4.394300 GCATGCTCTGTTAATCTGTGACTT 59.606 41.667 11.37 0.00 0.00 3.01
1341 2148 4.212143 AGCATGCTCTGTTAATCTGTGA 57.788 40.909 16.30 0.00 0.00 3.58
1359 2166 0.944386 GCACCTGAAGACGAAAAGCA 59.056 50.000 0.00 0.00 0.00 3.91
1382 2189 6.373005 TGGAATTCCTTCTTGATGTACAGA 57.627 37.500 24.73 0.00 36.82 3.41
1640 2447 2.371841 TGAGATGTACAAAGGCACCAGT 59.628 45.455 0.00 0.00 0.00 4.00
1689 2496 1.598130 GTGGAAGCGTGTTGAGCCT 60.598 57.895 0.00 0.00 34.64 4.58
1995 2878 5.518865 TCAGGGATGAATTTAAAGAAGGGG 58.481 41.667 0.00 0.00 0.00 4.79
2206 3091 5.961396 ACTACTACTTCGACATTCTGTGT 57.039 39.130 0.00 0.00 45.83 3.72
2287 3172 6.464322 CCAACCTATATAGCCACAGTTCATCA 60.464 42.308 4.04 0.00 0.00 3.07
2306 3191 4.178956 ACTTGTGTCCATTTACCAACCT 57.821 40.909 0.00 0.00 0.00 3.50
2428 3313 7.170658 TGAAACCCGAATTGTGAAATCATTTTC 59.829 33.333 0.00 0.00 41.39 2.29
2467 3352 9.707957 TCCAACATACCCAAACATTATATCTTT 57.292 29.630 0.00 0.00 0.00 2.52
2468 3353 9.707957 TTCCAACATACCCAAACATTATATCTT 57.292 29.630 0.00 0.00 0.00 2.40
2469 3354 9.881773 ATTCCAACATACCCAAACATTATATCT 57.118 29.630 0.00 0.00 0.00 1.98
2471 3356 9.881773 AGATTCCAACATACCCAAACATTATAT 57.118 29.630 0.00 0.00 0.00 0.86
2473 3358 9.707957 TTAGATTCCAACATACCCAAACATTAT 57.292 29.630 0.00 0.00 0.00 1.28
2474 3359 9.184523 CTTAGATTCCAACATACCCAAACATTA 57.815 33.333 0.00 0.00 0.00 1.90
2475 3360 7.673926 ACTTAGATTCCAACATACCCAAACATT 59.326 33.333 0.00 0.00 0.00 2.71
2476 3361 7.122650 CACTTAGATTCCAACATACCCAAACAT 59.877 37.037 0.00 0.00 0.00 2.71
2477 3362 6.432783 CACTTAGATTCCAACATACCCAAACA 59.567 38.462 0.00 0.00 0.00 2.83
2478 3363 6.433093 ACACTTAGATTCCAACATACCCAAAC 59.567 38.462 0.00 0.00 0.00 2.93
2479 3364 6.548321 ACACTTAGATTCCAACATACCCAAA 58.452 36.000 0.00 0.00 0.00 3.28
2480 3365 6.134535 ACACTTAGATTCCAACATACCCAA 57.865 37.500 0.00 0.00 0.00 4.12
2481 3366 5.772393 ACACTTAGATTCCAACATACCCA 57.228 39.130 0.00 0.00 0.00 4.51
2482 3367 5.357032 CCAACACTTAGATTCCAACATACCC 59.643 44.000 0.00 0.00 0.00 3.69
2483 3368 5.944007 ACCAACACTTAGATTCCAACATACC 59.056 40.000 0.00 0.00 0.00 2.73
2803 3694 1.977854 ACACTCTGGTTCACCATGCTA 59.022 47.619 0.00 0.00 46.46 3.49
3838 4736 5.140454 AGATTCCAAAGCAAACCAGTTAGT 58.860 37.500 0.00 0.00 0.00 2.24
3873 4771 7.326063 CCTTGTTTGATCGGAAAAAGTGATAAC 59.674 37.037 9.46 0.00 0.00 1.89
3939 4837 2.905415 TCAAGATGGGAATTGTGCCT 57.095 45.000 0.00 0.00 35.89 4.75
4121 5019 2.815211 CGATGCAGACACCACGGG 60.815 66.667 0.00 0.00 0.00 5.28
4354 5252 2.291735 TGATGAATCAGGCAATGGTGGT 60.292 45.455 0.00 0.00 32.11 4.16
4869 5776 5.120674 TGCATATGTATCTAGTTCGCATTGC 59.879 40.000 4.29 0.00 0.00 3.56
4888 5795 8.626526 TCGCTCTAAAATCCGTATATATGCATA 58.373 33.333 9.27 9.27 0.00 3.14
4908 5815 3.120060 GCAAAATGTGTGAATCTCGCTCT 60.120 43.478 0.00 0.00 0.00 4.09
4944 5851 2.327373 GGTAGGATCCCTGGTTCTACC 58.673 57.143 8.55 8.22 39.22 3.18
4945 5852 1.962100 CGGTAGGATCCCTGGTTCTAC 59.038 57.143 8.55 2.19 34.61 2.59
4946 5853 1.133262 CCGGTAGGATCCCTGGTTCTA 60.133 57.143 8.55 0.00 41.02 2.10
4947 5854 0.398664 CCGGTAGGATCCCTGGTTCT 60.399 60.000 8.55 0.00 41.02 3.01
4948 5855 0.398098 TCCGGTAGGATCCCTGGTTC 60.398 60.000 8.55 0.00 42.75 3.62
4949 5856 1.707827 TCCGGTAGGATCCCTGGTT 59.292 57.895 8.55 0.00 42.75 3.67
4950 5857 3.447261 TCCGGTAGGATCCCTGGT 58.553 61.111 8.55 0.00 42.75 4.00
4958 5865 1.379977 CAGAGCAGGTCCGGTAGGA 60.380 63.158 0.00 0.00 46.11 2.94
4959 5866 0.395311 TACAGAGCAGGTCCGGTAGG 60.395 60.000 0.00 0.00 39.46 3.18
4960 5867 1.025812 CTACAGAGCAGGTCCGGTAG 58.974 60.000 0.00 12.25 31.08 3.18
4961 5868 0.395311 CCTACAGAGCAGGTCCGGTA 60.395 60.000 0.00 0.00 0.00 4.02
4962 5869 1.682684 CCTACAGAGCAGGTCCGGT 60.683 63.158 0.00 0.00 0.00 5.28
4963 5870 1.258445 AACCTACAGAGCAGGTCCGG 61.258 60.000 0.00 0.00 45.90 5.14
4964 5871 0.108615 CAACCTACAGAGCAGGTCCG 60.109 60.000 0.00 0.00 45.90 4.79
4965 5872 0.977395 ACAACCTACAGAGCAGGTCC 59.023 55.000 0.00 0.00 45.90 4.46
4966 5873 2.166664 CCTACAACCTACAGAGCAGGTC 59.833 54.545 0.00 0.00 45.90 3.85
4968 5875 1.482593 CCCTACAACCTACAGAGCAGG 59.517 57.143 0.00 0.00 39.25 4.85
4969 5876 1.482593 CCCCTACAACCTACAGAGCAG 59.517 57.143 0.00 0.00 0.00 4.24
4970 5877 1.078159 TCCCCTACAACCTACAGAGCA 59.922 52.381 0.00 0.00 0.00 4.26
4971 5878 1.861982 TCCCCTACAACCTACAGAGC 58.138 55.000 0.00 0.00 0.00 4.09
4972 5879 2.766828 CCTTCCCCTACAACCTACAGAG 59.233 54.545 0.00 0.00 0.00 3.35
4973 5880 2.384375 TCCTTCCCCTACAACCTACAGA 59.616 50.000 0.00 0.00 0.00 3.41
4974 5881 2.829023 TCCTTCCCCTACAACCTACAG 58.171 52.381 0.00 0.00 0.00 2.74
4975 5882 3.112263 CATCCTTCCCCTACAACCTACA 58.888 50.000 0.00 0.00 0.00 2.74
4976 5883 2.438392 CCATCCTTCCCCTACAACCTAC 59.562 54.545 0.00 0.00 0.00 3.18
4977 5884 2.319747 TCCATCCTTCCCCTACAACCTA 59.680 50.000 0.00 0.00 0.00 3.08
4978 5885 1.082194 TCCATCCTTCCCCTACAACCT 59.918 52.381 0.00 0.00 0.00 3.50
4979 5886 1.490910 CTCCATCCTTCCCCTACAACC 59.509 57.143 0.00 0.00 0.00 3.77
4980 5887 1.490910 CCTCCATCCTTCCCCTACAAC 59.509 57.143 0.00 0.00 0.00 3.32
4981 5888 1.368203 TCCTCCATCCTTCCCCTACAA 59.632 52.381 0.00 0.00 0.00 2.41
4982 5889 1.023719 TCCTCCATCCTTCCCCTACA 58.976 55.000 0.00 0.00 0.00 2.74
4983 5890 1.723288 CTCCTCCATCCTTCCCCTAC 58.277 60.000 0.00 0.00 0.00 3.18
4984 5891 0.568192 CCTCCTCCATCCTTCCCCTA 59.432 60.000 0.00 0.00 0.00 3.53
4985 5892 1.319799 CCTCCTCCATCCTTCCCCT 59.680 63.158 0.00 0.00 0.00 4.79
4986 5893 1.772156 CCCTCCTCCATCCTTCCCC 60.772 68.421 0.00 0.00 0.00 4.81
4987 5894 2.456443 GCCCTCCTCCATCCTTCCC 61.456 68.421 0.00 0.00 0.00 3.97
4988 5895 2.812619 CGCCCTCCTCCATCCTTCC 61.813 68.421 0.00 0.00 0.00 3.46
4989 5896 2.825264 CGCCCTCCTCCATCCTTC 59.175 66.667 0.00 0.00 0.00 3.46
4990 5897 3.483869 GCGCCCTCCTCCATCCTT 61.484 66.667 0.00 0.00 0.00 3.36
5038 5945 4.253257 CTCCTCCTACGCGACGGC 62.253 72.222 15.93 0.00 0.00 5.68
5039 5946 3.584052 CCTCCTCCTACGCGACGG 61.584 72.222 15.93 13.03 0.00 4.79
5040 5947 1.892862 ATCCTCCTCCTACGCGACG 60.893 63.158 15.93 2.11 0.00 5.12
5041 5948 1.655329 CATCCTCCTCCTACGCGAC 59.345 63.158 15.93 0.00 0.00 5.19
5042 5949 1.528542 CCATCCTCCTCCTACGCGA 60.529 63.158 15.93 0.00 0.00 5.87
5043 5950 3.043419 CCATCCTCCTCCTACGCG 58.957 66.667 3.53 3.53 0.00 6.01
5044 5951 2.737830 GCCATCCTCCTCCTACGC 59.262 66.667 0.00 0.00 0.00 4.42
5045 5952 2.565645 CCGCCATCCTCCTCCTACG 61.566 68.421 0.00 0.00 0.00 3.51
5046 5953 2.873525 GCCGCCATCCTCCTCCTAC 61.874 68.421 0.00 0.00 0.00 3.18
5047 5954 2.524394 GCCGCCATCCTCCTCCTA 60.524 66.667 0.00 0.00 0.00 2.94
5067 5974 4.222847 GAGCCGGAACCCTAGCCG 62.223 72.222 5.05 0.00 46.80 5.52
5068 5975 3.862991 GGAGCCGGAACCCTAGCC 61.863 72.222 5.05 0.00 0.00 3.93
5069 5976 1.911702 AAAGGAGCCGGAACCCTAGC 61.912 60.000 5.05 0.00 0.00 3.42
5070 5977 0.107654 CAAAGGAGCCGGAACCCTAG 60.108 60.000 5.05 0.50 0.00 3.02
5071 5978 1.559065 CCAAAGGAGCCGGAACCCTA 61.559 60.000 5.05 0.00 0.00 3.53
5072 5979 2.757077 CAAAGGAGCCGGAACCCT 59.243 61.111 5.05 4.47 0.00 4.34
5073 5980 2.361230 CCAAAGGAGCCGGAACCC 60.361 66.667 5.05 1.57 0.00 4.11
5074 5981 2.361230 CCCAAAGGAGCCGGAACC 60.361 66.667 5.05 7.56 33.47 3.62
5075 5982 2.754375 TCCCAAAGGAGCCGGAAC 59.246 61.111 5.05 0.00 37.19 3.62
5084 5991 2.566111 TATTGCCCGGCTCCCAAAGG 62.566 60.000 11.61 0.00 0.00 3.11
5085 5992 1.077068 TATTGCCCGGCTCCCAAAG 60.077 57.895 11.61 0.00 0.00 2.77
5086 5993 1.077068 CTATTGCCCGGCTCCCAAA 60.077 57.895 11.61 0.00 0.00 3.28
5087 5994 2.595095 CTATTGCCCGGCTCCCAA 59.405 61.111 11.61 0.00 0.00 4.12
5088 5995 3.488569 CCTATTGCCCGGCTCCCA 61.489 66.667 11.61 0.00 0.00 4.37
5089 5996 4.271016 CCCTATTGCCCGGCTCCC 62.271 72.222 11.61 0.00 0.00 4.30
5090 5997 1.198759 TATCCCTATTGCCCGGCTCC 61.199 60.000 11.61 0.00 0.00 4.70
5091 5998 0.690762 TTATCCCTATTGCCCGGCTC 59.309 55.000 11.61 0.00 0.00 4.70
5092 5999 1.372501 ATTATCCCTATTGCCCGGCT 58.627 50.000 11.61 0.00 0.00 5.52
5093 6000 3.359695 TTATTATCCCTATTGCCCGGC 57.640 47.619 1.04 1.04 0.00 6.13
5094 6001 7.518188 AGAATATTATTATCCCTATTGCCCGG 58.482 38.462 0.00 0.00 0.00 5.73
5095 6002 8.980481 AAGAATATTATTATCCCTATTGCCCG 57.020 34.615 0.00 0.00 0.00 6.13
5121 6028 9.914131 GTAAGACTCTTTTTGGAATTAAGCAAT 57.086 29.630 0.00 0.00 0.00 3.56
5122 6029 8.908903 TGTAAGACTCTTTTTGGAATTAAGCAA 58.091 29.630 0.00 0.00 0.00 3.91
5123 6030 8.458573 TGTAAGACTCTTTTTGGAATTAAGCA 57.541 30.769 0.00 0.00 0.00 3.91
5124 6031 7.539022 GCTGTAAGACTCTTTTTGGAATTAAGC 59.461 37.037 0.00 0.00 34.07 3.09
5125 6032 8.023706 GGCTGTAAGACTCTTTTTGGAATTAAG 58.976 37.037 0.00 0.00 40.68 1.85
5126 6033 7.882179 GGCTGTAAGACTCTTTTTGGAATTAA 58.118 34.615 0.00 0.00 40.68 1.40
5127 6034 7.448748 GGCTGTAAGACTCTTTTTGGAATTA 57.551 36.000 0.00 0.00 40.68 1.40
5128 6035 6.332735 GGCTGTAAGACTCTTTTTGGAATT 57.667 37.500 0.00 0.00 40.68 2.17
5129 6036 5.966742 GGCTGTAAGACTCTTTTTGGAAT 57.033 39.130 0.00 0.00 40.68 3.01
5179 6086 9.462606 CCCACAAGTTATCTTAGGTTAATTCTT 57.537 33.333 0.00 0.00 32.07 2.52
5180 6087 7.556635 GCCCACAAGTTATCTTAGGTTAATTCT 59.443 37.037 0.00 0.00 32.07 2.40
5181 6088 7.556635 AGCCCACAAGTTATCTTAGGTTAATTC 59.443 37.037 0.00 0.00 32.07 2.17
5182 6089 7.410991 AGCCCACAAGTTATCTTAGGTTAATT 58.589 34.615 4.43 0.00 32.07 1.40
5183 6090 6.970191 AGCCCACAAGTTATCTTAGGTTAAT 58.030 36.000 4.43 0.00 32.07 1.40
5184 6091 6.382919 AGCCCACAAGTTATCTTAGGTTAA 57.617 37.500 4.43 0.00 32.07 2.01
5185 6092 7.400915 TCTTAGCCCACAAGTTATCTTAGGTTA 59.599 37.037 4.43 0.00 32.07 2.85
5186 6093 4.929146 AGCCCACAAGTTATCTTAGGTT 57.071 40.909 4.43 0.00 32.07 3.50
5187 6094 5.724854 TCTTAGCCCACAAGTTATCTTAGGT 59.275 40.000 4.43 0.00 32.07 3.08
5188 6095 6.235231 TCTTAGCCCACAAGTTATCTTAGG 57.765 41.667 0.00 0.00 32.07 2.69
5189 6096 7.254932 GCAATCTTAGCCCACAAGTTATCTTAG 60.255 40.741 0.00 0.00 32.07 2.18
5190 6097 6.542370 GCAATCTTAGCCCACAAGTTATCTTA 59.458 38.462 0.00 0.00 32.07 2.10
5191 6098 5.358160 GCAATCTTAGCCCACAAGTTATCTT 59.642 40.000 0.00 0.00 0.00 2.40
5192 6099 4.884164 GCAATCTTAGCCCACAAGTTATCT 59.116 41.667 0.00 0.00 0.00 1.98
5193 6100 4.036852 GGCAATCTTAGCCCACAAGTTATC 59.963 45.833 0.00 0.00 46.50 1.75
5194 6101 3.954258 GGCAATCTTAGCCCACAAGTTAT 59.046 43.478 0.00 0.00 46.50 1.89
5195 6102 3.352648 GGCAATCTTAGCCCACAAGTTA 58.647 45.455 0.00 0.00 46.50 2.24
5196 6103 2.171003 GGCAATCTTAGCCCACAAGTT 58.829 47.619 0.00 0.00 46.50 2.66
5197 6104 1.839424 GGCAATCTTAGCCCACAAGT 58.161 50.000 0.00 0.00 46.50 3.16
5205 6112 1.823899 CCCACCGGGCAATCTTAGC 60.824 63.158 6.32 0.00 35.35 3.09
5206 6113 4.559502 CCCACCGGGCAATCTTAG 57.440 61.111 6.32 0.00 35.35 2.18
5216 6123 1.153229 GTTTAGCTAGGCCCACCGG 60.153 63.158 0.00 0.00 42.76 5.28
5217 6124 1.153229 GGTTTAGCTAGGCCCACCG 60.153 63.158 0.00 0.00 42.76 4.94
5218 6125 1.153229 CGGTTTAGCTAGGCCCACC 60.153 63.158 0.00 4.71 0.00 4.61
5219 6126 1.153229 CCGGTTTAGCTAGGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
5220 6127 3.038945 GCCGGTTTAGCTAGGCCCA 62.039 63.158 10.00 0.00 43.54 5.36
5221 6128 2.203167 GCCGGTTTAGCTAGGCCC 60.203 66.667 10.00 3.43 43.54 5.80
5224 6131 2.158871 TGTTATGGCCGGTTTAGCTAGG 60.159 50.000 1.90 0.00 0.00 3.02
5225 6132 2.870411 GTGTTATGGCCGGTTTAGCTAG 59.130 50.000 1.90 0.00 0.00 3.42
5226 6133 2.502538 AGTGTTATGGCCGGTTTAGCTA 59.497 45.455 1.90 0.00 0.00 3.32
5227 6134 1.280998 AGTGTTATGGCCGGTTTAGCT 59.719 47.619 1.90 0.00 0.00 3.32
5228 6135 1.746470 AGTGTTATGGCCGGTTTAGC 58.254 50.000 1.90 0.00 0.00 3.09
5229 6136 3.606687 AGAAGTGTTATGGCCGGTTTAG 58.393 45.455 1.90 0.00 0.00 1.85
5230 6137 3.602483 GAGAAGTGTTATGGCCGGTTTA 58.398 45.455 1.90 0.00 0.00 2.01
5231 6138 2.433436 GAGAAGTGTTATGGCCGGTTT 58.567 47.619 1.90 0.00 0.00 3.27
5232 6139 1.339727 GGAGAAGTGTTATGGCCGGTT 60.340 52.381 1.90 0.00 0.00 4.44
5233 6140 0.252197 GGAGAAGTGTTATGGCCGGT 59.748 55.000 1.90 0.00 0.00 5.28
5234 6141 0.463833 GGGAGAAGTGTTATGGCCGG 60.464 60.000 0.00 0.00 0.00 6.13
5235 6142 0.463833 GGGGAGAAGTGTTATGGCCG 60.464 60.000 0.00 0.00 0.00 6.13
5236 6143 0.463833 CGGGGAGAAGTGTTATGGCC 60.464 60.000 0.00 0.00 0.00 5.36
5237 6144 1.095807 GCGGGGAGAAGTGTTATGGC 61.096 60.000 0.00 0.00 0.00 4.40
5238 6145 0.463833 GGCGGGGAGAAGTGTTATGG 60.464 60.000 0.00 0.00 0.00 2.74
5239 6146 0.541863 AGGCGGGGAGAAGTGTTATG 59.458 55.000 0.00 0.00 0.00 1.90
5240 6147 0.541863 CAGGCGGGGAGAAGTGTTAT 59.458 55.000 0.00 0.00 0.00 1.89
5241 6148 1.980052 CAGGCGGGGAGAAGTGTTA 59.020 57.895 0.00 0.00 0.00 2.41
5242 6149 2.750350 CAGGCGGGGAGAAGTGTT 59.250 61.111 0.00 0.00 0.00 3.32
5243 6150 4.021925 GCAGGCGGGGAGAAGTGT 62.022 66.667 0.00 0.00 0.00 3.55
5244 6151 4.020617 TGCAGGCGGGGAGAAGTG 62.021 66.667 0.00 0.00 0.00 3.16
5245 6152 4.021925 GTGCAGGCGGGGAGAAGT 62.022 66.667 0.00 0.00 0.00 3.01
5246 6153 3.551496 TTGTGCAGGCGGGGAGAAG 62.551 63.158 0.00 0.00 0.00 2.85
5247 6154 3.126703 TTTGTGCAGGCGGGGAGAA 62.127 57.895 0.00 0.00 0.00 2.87
5248 6155 3.565214 TTTGTGCAGGCGGGGAGA 61.565 61.111 0.00 0.00 0.00 3.71
5249 6156 3.365265 GTTTGTGCAGGCGGGGAG 61.365 66.667 0.00 0.00 0.00 4.30
5250 6157 4.196778 TGTTTGTGCAGGCGGGGA 62.197 61.111 0.00 0.00 0.00 4.81
5251 6158 3.673484 CTGTTTGTGCAGGCGGGG 61.673 66.667 0.00 0.00 33.11 5.73
5252 6159 4.347453 GCTGTTTGTGCAGGCGGG 62.347 66.667 0.00 0.00 37.00 6.13
5253 6160 3.259425 GAGCTGTTTGTGCAGGCGG 62.259 63.158 0.00 0.00 37.00 6.13
5254 6161 2.253452 GAGCTGTTTGTGCAGGCG 59.747 61.111 0.00 0.00 37.00 5.52
5255 6162 2.253452 CGAGCTGTTTGTGCAGGC 59.747 61.111 0.00 0.00 37.00 4.85
5256 6163 1.571460 GACGAGCTGTTTGTGCAGG 59.429 57.895 0.00 0.00 37.00 4.85
5257 6164 0.882042 AGGACGAGCTGTTTGTGCAG 60.882 55.000 6.20 0.00 39.37 4.41
5258 6165 0.880278 GAGGACGAGCTGTTTGTGCA 60.880 55.000 6.20 0.00 34.13 4.57
5259 6166 1.862806 GAGGACGAGCTGTTTGTGC 59.137 57.895 0.00 0.00 0.00 4.57
5260 6167 0.318699 TCGAGGACGAGCTGTTTGTG 60.319 55.000 0.00 0.00 43.81 3.33
5261 6168 2.038690 TCGAGGACGAGCTGTTTGT 58.961 52.632 0.00 0.00 43.81 2.83
5262 6169 4.966005 TCGAGGACGAGCTGTTTG 57.034 55.556 0.00 0.00 43.81 2.93
5270 6177 0.322277 ACCTTACAGCTCGAGGACGA 60.322 55.000 15.58 0.00 46.56 4.20
5271 6178 0.179161 CACCTTACAGCTCGAGGACG 60.179 60.000 15.58 0.00 41.26 4.79
5272 6179 0.173708 CCACCTTACAGCTCGAGGAC 59.826 60.000 15.58 0.00 34.61 3.85
5273 6180 0.970937 CCCACCTTACAGCTCGAGGA 60.971 60.000 15.58 0.00 34.61 3.71
5274 6181 1.517832 CCCACCTTACAGCTCGAGG 59.482 63.158 15.58 0.17 36.62 4.63
5275 6182 0.970937 TCCCCACCTTACAGCTCGAG 60.971 60.000 8.45 8.45 0.00 4.04
5276 6183 0.543410 TTCCCCACCTTACAGCTCGA 60.543 55.000 0.00 0.00 0.00 4.04
5277 6184 0.108138 CTTCCCCACCTTACAGCTCG 60.108 60.000 0.00 0.00 0.00 5.03
5278 6185 0.393132 GCTTCCCCACCTTACAGCTC 60.393 60.000 0.00 0.00 0.00 4.09
5279 6186 1.685820 GCTTCCCCACCTTACAGCT 59.314 57.895 0.00 0.00 0.00 4.24
5280 6187 1.745489 CGCTTCCCCACCTTACAGC 60.745 63.158 0.00 0.00 0.00 4.40
5281 6188 1.745489 GCGCTTCCCCACCTTACAG 60.745 63.158 0.00 0.00 0.00 2.74
5282 6189 1.774894 AAGCGCTTCCCCACCTTACA 61.775 55.000 18.98 0.00 0.00 2.41
5283 6190 1.002502 AAGCGCTTCCCCACCTTAC 60.003 57.895 18.98 0.00 0.00 2.34
5284 6191 1.002624 CAAGCGCTTCCCCACCTTA 60.003 57.895 22.21 0.00 0.00 2.69
5285 6192 2.282462 CAAGCGCTTCCCCACCTT 60.282 61.111 22.21 0.00 0.00 3.50
5291 6198 4.103103 GTTCCGCAAGCGCTTCCC 62.103 66.667 22.21 13.38 38.24 3.97
5292 6199 3.028366 GAGTTCCGCAAGCGCTTCC 62.028 63.158 22.21 11.23 38.24 3.46
5293 6200 2.476499 GAGTTCCGCAAGCGCTTC 59.524 61.111 22.21 14.13 38.24 3.86
5294 6201 3.050275 GGAGTTCCGCAAGCGCTT 61.050 61.111 18.98 18.98 38.24 4.68
5295 6202 3.941657 GAGGAGTTCCGCAAGCGCT 62.942 63.158 2.64 2.64 42.08 5.92
5296 6203 3.491652 GAGGAGTTCCGCAAGCGC 61.492 66.667 9.26 0.00 42.08 5.92
5297 6204 3.181967 CGAGGAGTTCCGCAAGCG 61.182 66.667 7.60 7.60 42.08 4.68
5298 6205 1.807573 CTCGAGGAGTTCCGCAAGC 60.808 63.158 3.91 0.00 42.08 4.01
5299 6206 1.153745 CCTCGAGGAGTTCCGCAAG 60.154 63.158 28.21 0.00 42.08 4.01
5300 6207 2.970639 CCTCGAGGAGTTCCGCAA 59.029 61.111 28.21 0.00 42.08 4.85
5301 6208 3.760035 GCCTCGAGGAGTTCCGCA 61.760 66.667 35.69 0.00 42.08 5.69
5302 6209 4.856607 CGCCTCGAGGAGTTCCGC 62.857 72.222 35.69 16.14 42.08 5.54
5303 6210 2.395367 GATCGCCTCGAGGAGTTCCG 62.395 65.000 35.69 26.22 39.91 4.30
5304 6211 1.360911 GATCGCCTCGAGGAGTTCC 59.639 63.158 35.69 19.54 39.91 3.62
5305 6212 0.456221 TTGATCGCCTCGAGGAGTTC 59.544 55.000 35.69 31.81 39.91 3.01
5306 6213 0.173708 GTTGATCGCCTCGAGGAGTT 59.826 55.000 35.69 26.14 39.91 3.01
5307 6214 1.668101 GGTTGATCGCCTCGAGGAGT 61.668 60.000 35.69 21.14 39.91 3.85
5308 6215 1.066587 GGTTGATCGCCTCGAGGAG 59.933 63.158 35.69 31.46 39.91 3.69
5309 6216 1.667154 CTGGTTGATCGCCTCGAGGA 61.667 60.000 35.69 16.06 39.91 3.71
5310 6217 1.227089 CTGGTTGATCGCCTCGAGG 60.227 63.158 27.83 27.83 39.91 4.63
5311 6218 1.880340 GCTGGTTGATCGCCTCGAG 60.880 63.158 5.13 5.13 39.91 4.04
5312 6219 2.184322 GCTGGTTGATCGCCTCGA 59.816 61.111 7.51 0.00 41.13 4.04
5313 6220 3.257561 CGCTGGTTGATCGCCTCG 61.258 66.667 7.51 7.14 0.00 4.63
5314 6221 2.125512 ACGCTGGTTGATCGCCTC 60.126 61.111 7.51 0.21 0.00 4.70
5315 6222 2.125512 GACGCTGGTTGATCGCCT 60.126 61.111 7.51 0.00 0.00 5.52
5316 6223 1.573829 TTTGACGCTGGTTGATCGCC 61.574 55.000 0.00 0.00 0.00 5.54
5317 6224 0.452784 GTTTGACGCTGGTTGATCGC 60.453 55.000 0.00 0.00 0.00 4.58
5318 6225 0.865111 TGTTTGACGCTGGTTGATCG 59.135 50.000 0.00 0.00 0.00 3.69
5319 6226 1.069227 GGTGTTTGACGCTGGTTGATC 60.069 52.381 0.00 0.00 0.00 2.92
5320 6227 0.951558 GGTGTTTGACGCTGGTTGAT 59.048 50.000 0.00 0.00 0.00 2.57
5321 6228 0.107410 AGGTGTTTGACGCTGGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
5322 6229 0.738389 AAGGTGTTTGACGCTGGTTG 59.262 50.000 0.00 0.00 0.00 3.77
5323 6230 1.021968 GAAGGTGTTTGACGCTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
5324 6231 0.180406 AGAAGGTGTTTGACGCTGGT 59.820 50.000 0.00 0.00 0.00 4.00
5325 6232 0.868406 GAGAAGGTGTTTGACGCTGG 59.132 55.000 0.00 0.00 0.00 4.85
5326 6233 0.508641 CGAGAAGGTGTTTGACGCTG 59.491 55.000 0.00 0.00 0.00 5.18
5327 6234 0.387929 TCGAGAAGGTGTTTGACGCT 59.612 50.000 0.00 0.00 0.00 5.07
5328 6235 0.507358 GTCGAGAAGGTGTTTGACGC 59.493 55.000 0.00 0.00 0.00 5.19
5329 6236 1.787155 CTGTCGAGAAGGTGTTTGACG 59.213 52.381 0.00 0.00 0.00 4.35
5330 6237 1.527311 GCTGTCGAGAAGGTGTTTGAC 59.473 52.381 0.00 0.00 0.00 3.18
5331 6238 1.412710 AGCTGTCGAGAAGGTGTTTGA 59.587 47.619 0.00 0.00 0.00 2.69
5332 6239 1.528586 CAGCTGTCGAGAAGGTGTTTG 59.471 52.381 15.71 0.00 38.15 2.93
5333 6240 1.541233 CCAGCTGTCGAGAAGGTGTTT 60.541 52.381 20.07 0.00 40.70 2.83
5334 6241 0.034059 CCAGCTGTCGAGAAGGTGTT 59.966 55.000 20.07 0.00 40.70 3.32
5335 6242 1.668294 CCAGCTGTCGAGAAGGTGT 59.332 57.895 20.07 0.00 40.70 4.16
5336 6243 1.079543 CCCAGCTGTCGAGAAGGTG 60.080 63.158 13.81 16.61 41.70 4.00
5337 6244 2.286523 CCCCAGCTGTCGAGAAGGT 61.287 63.158 13.81 0.00 0.00 3.50
5338 6245 2.581354 CCCCAGCTGTCGAGAAGG 59.419 66.667 13.81 4.38 0.00 3.46
5339 6246 2.125350 GCCCCAGCTGTCGAGAAG 60.125 66.667 13.81 0.00 35.50 2.85
5340 6247 4.069232 CGCCCCAGCTGTCGAGAA 62.069 66.667 13.81 0.00 36.60 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.