Multiple sequence alignment - TraesCS6D01G175600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G175600 chr6D 100.000 2570 0 0 1 2570 168255424 168257993 0.000000e+00 4747
1 TraesCS6D01G175600 chr6D 100.000 248 0 0 2323 2570 79830171 79830418 2.330000e-125 459
2 TraesCS6D01G175600 chr6D 99.598 249 1 0 2322 2570 142075540 142075788 3.010000e-124 455
3 TraesCS6D01G175600 chr1A 98.925 2326 25 0 1 2326 554512746 554515071 0.000000e+00 4157
4 TraesCS6D01G175600 chr5D 98.796 2326 28 0 1 2326 503218716 503221041 0.000000e+00 4141
5 TraesCS6D01G175600 chr5D 98.323 2326 39 0 1 2326 6189438 6191763 0.000000e+00 4080
6 TraesCS6D01G175600 chr5D 98.521 2299 33 1 1 2298 503277728 503275430 0.000000e+00 4056
7 TraesCS6D01G175600 chr5D 96.629 267 7 2 2304 2570 149630911 149631175 2.350000e-120 442
8 TraesCS6D01G175600 chr3B 98.710 2326 30 0 1 2326 201527522 201529847 0.000000e+00 4130
9 TraesCS6D01G175600 chr1D 98.495 2326 32 3 1 2326 254397611 254395289 0.000000e+00 4098
10 TraesCS6D01G175600 chr1D 99.209 253 2 0 2318 2570 26040595 26040343 8.380000e-125 457
11 TraesCS6D01G175600 chr1D 100.000 246 0 0 2325 2570 428396965 428396720 3.010000e-124 455
12 TraesCS6D01G175600 chrUn 98.407 2323 36 1 4 2326 216518101 216515780 0.000000e+00 4084
13 TraesCS6D01G175600 chr3A 98.366 2326 35 3 1 2326 672909509 672907187 0.000000e+00 4082
14 TraesCS6D01G175600 chr3A 98.194 2326 40 2 1 2326 594899126 594896803 0.000000e+00 4061
15 TraesCS6D01G175600 chr3D 100.000 249 0 0 2322 2570 44769470 44769222 6.480000e-126 460
16 TraesCS6D01G175600 chr3D 99.213 254 1 1 2317 2570 113832513 113832765 8.380000e-125 457
17 TraesCS6D01G175600 chr4D 98.828 256 2 1 2316 2570 10498770 10499025 3.010000e-124 455
18 TraesCS6D01G175600 chr2D 98.828 256 2 1 2315 2570 498241352 498241098 3.010000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G175600 chr6D 168255424 168257993 2569 False 4747 4747 100.000 1 2570 1 chr6D.!!$F3 2569
1 TraesCS6D01G175600 chr1A 554512746 554515071 2325 False 4157 4157 98.925 1 2326 1 chr1A.!!$F1 2325
2 TraesCS6D01G175600 chr5D 503218716 503221041 2325 False 4141 4141 98.796 1 2326 1 chr5D.!!$F3 2325
3 TraesCS6D01G175600 chr5D 6189438 6191763 2325 False 4080 4080 98.323 1 2326 1 chr5D.!!$F1 2325
4 TraesCS6D01G175600 chr5D 503275430 503277728 2298 True 4056 4056 98.521 1 2298 1 chr5D.!!$R1 2297
5 TraesCS6D01G175600 chr3B 201527522 201529847 2325 False 4130 4130 98.710 1 2326 1 chr3B.!!$F1 2325
6 TraesCS6D01G175600 chr1D 254395289 254397611 2322 True 4098 4098 98.495 1 2326 1 chr1D.!!$R2 2325
7 TraesCS6D01G175600 chrUn 216515780 216518101 2321 True 4084 4084 98.407 4 2326 1 chrUn.!!$R1 2322
8 TraesCS6D01G175600 chr3A 672907187 672909509 2322 True 4082 4082 98.366 1 2326 1 chr3A.!!$R2 2325
9 TraesCS6D01G175600 chr3A 594896803 594899126 2323 True 4061 4061 98.194 1 2326 1 chr3A.!!$R1 2325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 671 0.811281 GGCGCTTTAACCATTCAGCT 59.189 50.000 7.64 0.0 0.00 4.24 F
1092 1093 4.044065 ACTTATTCCCAAACCTCATGTGGA 59.956 41.667 20.43 0.0 34.05 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1485 0.249489 CCGATCTTACCTTGGCTCGG 60.249 60.0 0.0 0.0 39.58 4.63 R
2341 2344 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 284 3.305676 CCAGGTAGTCGATGGCTATTCAG 60.306 52.174 0.00 0.00 0.00 3.02
469 470 4.586421 CCTATGCTCTGAGTTCCAGTATCA 59.414 45.833 6.53 0.00 43.38 2.15
670 671 0.811281 GGCGCTTTAACCATTCAGCT 59.189 50.000 7.64 0.00 0.00 4.24
908 909 9.809096 GAGTTTGACTCATAGTGATCATTTCTA 57.191 33.333 0.00 0.00 44.45 2.10
1092 1093 4.044065 ACTTATTCCCAAACCTCATGTGGA 59.956 41.667 20.43 0.00 34.05 4.02
1482 1485 5.768164 TCTTCATAGACAAACTTGGGGTTTC 59.232 40.000 0.00 0.00 45.26 2.78
1505 1508 0.466124 GCCAAGGTAAGATCGGCTCT 59.534 55.000 0.00 0.00 39.73 4.09
1841 1844 5.293560 GCCTATTAGAAGTAGAAGGTGCTG 58.706 45.833 0.00 0.00 0.00 4.41
2326 2329 4.216257 CCAAAGTCACTGAATGGGTAAGTG 59.784 45.833 0.00 0.00 42.17 3.16
2327 2330 4.974645 AAGTCACTGAATGGGTAAGTGA 57.025 40.909 0.76 0.76 46.05 3.41
2331 2334 5.560722 TCACTGAATGGGTAAGTGAAAGA 57.439 39.130 2.40 0.00 45.45 2.52
2332 2335 5.935945 TCACTGAATGGGTAAGTGAAAGAA 58.064 37.500 2.40 0.00 45.45 2.52
2333 2336 5.763204 TCACTGAATGGGTAAGTGAAAGAAC 59.237 40.000 2.40 0.00 45.45 3.01
2334 2337 5.530915 CACTGAATGGGTAAGTGAAAGAACA 59.469 40.000 0.00 0.00 43.22 3.18
2335 2338 6.207417 CACTGAATGGGTAAGTGAAAGAACAT 59.793 38.462 0.00 0.00 43.22 2.71
2336 2339 6.207417 ACTGAATGGGTAAGTGAAAGAACATG 59.793 38.462 0.00 0.00 0.00 3.21
2337 2340 5.048083 TGAATGGGTAAGTGAAAGAACATGC 60.048 40.000 0.00 0.00 0.00 4.06
2338 2341 2.811431 TGGGTAAGTGAAAGAACATGCG 59.189 45.455 0.00 0.00 0.00 4.73
2339 2342 2.161609 GGGTAAGTGAAAGAACATGCGG 59.838 50.000 0.00 0.00 0.00 5.69
2340 2343 2.812011 GGTAAGTGAAAGAACATGCGGT 59.188 45.455 0.00 0.00 0.00 5.68
2341 2344 3.364964 GGTAAGTGAAAGAACATGCGGTG 60.365 47.826 0.00 0.00 0.00 4.94
2342 2345 0.593128 AGTGAAAGAACATGCGGTGC 59.407 50.000 0.00 0.00 0.00 5.01
2343 2346 0.387239 GTGAAAGAACATGCGGTGCC 60.387 55.000 0.00 0.00 0.00 5.01
2344 2347 1.212751 GAAAGAACATGCGGTGCCC 59.787 57.895 0.00 0.00 0.00 5.36
2345 2348 2.212900 GAAAGAACATGCGGTGCCCC 62.213 60.000 0.00 0.00 0.00 5.80
2346 2349 4.740822 AGAACATGCGGTGCCCCC 62.741 66.667 0.00 0.00 0.00 5.40
2348 2351 4.380945 AACATGCGGTGCCCCCAT 62.381 61.111 0.00 0.00 0.00 4.00
2351 2354 4.380945 ATGCGGTGCCCCCATGTT 62.381 61.111 0.00 0.00 0.00 2.71
2352 2355 3.903281 ATGCGGTGCCCCCATGTTT 62.903 57.895 0.00 0.00 0.00 2.83
2353 2356 4.067913 GCGGTGCCCCCATGTTTG 62.068 66.667 0.00 0.00 0.00 2.93
2354 2357 3.381136 CGGTGCCCCCATGTTTGG 61.381 66.667 0.00 0.00 43.23 3.28
2355 2358 2.203773 GGTGCCCCCATGTTTGGT 60.204 61.111 0.00 0.00 41.91 3.67
2356 2359 1.841103 GGTGCCCCCATGTTTGGTT 60.841 57.895 0.00 0.00 41.91 3.67
2357 2360 1.414866 GGTGCCCCCATGTTTGGTTT 61.415 55.000 0.00 0.00 41.91 3.27
2358 2361 0.472044 GTGCCCCCATGTTTGGTTTT 59.528 50.000 0.00 0.00 41.91 2.43
2359 2362 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
2360 2363 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
2361 2364 1.135960 CCCCCATGTTTGGTTTTGGT 58.864 50.000 0.00 0.00 41.91 3.67
2362 2365 2.330216 CCCCCATGTTTGGTTTTGGTA 58.670 47.619 0.00 0.00 41.91 3.25
2363 2366 2.706190 CCCCCATGTTTGGTTTTGGTAA 59.294 45.455 0.00 0.00 41.91 2.85
2364 2367 3.329225 CCCCCATGTTTGGTTTTGGTAAT 59.671 43.478 0.00 0.00 41.91 1.89
2365 2368 4.202514 CCCCCATGTTTGGTTTTGGTAATT 60.203 41.667 0.00 0.00 41.91 1.40
2366 2369 4.759183 CCCCATGTTTGGTTTTGGTAATTG 59.241 41.667 0.00 0.00 41.91 2.32
2367 2370 5.455326 CCCCATGTTTGGTTTTGGTAATTGA 60.455 40.000 0.00 0.00 41.91 2.57
2368 2371 6.237154 CCCATGTTTGGTTTTGGTAATTGAT 58.763 36.000 0.00 0.00 41.91 2.57
2369 2372 6.149142 CCCATGTTTGGTTTTGGTAATTGATG 59.851 38.462 0.00 0.00 41.91 3.07
2370 2373 6.933521 CCATGTTTGGTTTTGGTAATTGATGA 59.066 34.615 0.00 0.00 38.30 2.92
2371 2374 7.095271 CCATGTTTGGTTTTGGTAATTGATGAC 60.095 37.037 0.00 0.00 38.30 3.06
2372 2375 6.878317 TGTTTGGTTTTGGTAATTGATGACA 58.122 32.000 0.00 0.00 0.00 3.58
2373 2376 7.331026 TGTTTGGTTTTGGTAATTGATGACAA 58.669 30.769 0.00 0.00 40.42 3.18
2374 2377 7.989741 TGTTTGGTTTTGGTAATTGATGACAAT 59.010 29.630 0.00 0.00 46.99 2.71
2375 2378 8.495148 GTTTGGTTTTGGTAATTGATGACAATC 58.505 33.333 0.00 0.00 44.67 2.67
2376 2379 7.537596 TGGTTTTGGTAATTGATGACAATCT 57.462 32.000 0.00 0.00 44.67 2.40
2377 2380 7.601856 TGGTTTTGGTAATTGATGACAATCTC 58.398 34.615 0.00 0.00 44.67 2.75
2378 2381 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
2379 2382 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
2382 2385 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
2383 2386 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
2384 2387 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
2385 2388 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
2389 2392 9.722184 ATTGATGACAATCTCTATGGACTAATG 57.278 33.333 0.00 0.00 42.20 1.90
2390 2393 7.674120 TGATGACAATCTCTATGGACTAATGG 58.326 38.462 0.00 0.00 33.61 3.16
2391 2394 7.290948 TGATGACAATCTCTATGGACTAATGGT 59.709 37.037 0.00 0.00 33.61 3.55
2392 2395 7.437713 TGACAATCTCTATGGACTAATGGTT 57.562 36.000 0.00 0.00 0.00 3.67
2393 2396 7.275183 TGACAATCTCTATGGACTAATGGTTG 58.725 38.462 0.00 0.00 0.00 3.77
2394 2397 6.058183 ACAATCTCTATGGACTAATGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
2395 2398 4.689612 TCTCTATGGACTAATGGTTGCC 57.310 45.455 0.00 0.00 0.00 4.52
2396 2399 4.298626 TCTCTATGGACTAATGGTTGCCT 58.701 43.478 0.00 0.00 0.00 4.75
2397 2400 4.721776 TCTCTATGGACTAATGGTTGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
2398 2401 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
2399 2402 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
2400 2403 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
2401 2404 2.375174 TGGACTAATGGTTGCCTTGAGT 59.625 45.455 0.00 0.00 0.00 3.41
2402 2405 3.181434 TGGACTAATGGTTGCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
2403 2406 4.042311 TGGACTAATGGTTGCCTTGAGTTA 59.958 41.667 0.00 0.00 0.00 2.24
2404 2407 5.193679 GGACTAATGGTTGCCTTGAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
2405 2408 6.069905 TGGACTAATGGTTGCCTTGAGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
2406 2409 6.998673 GGACTAATGGTTGCCTTGAGTTATAT 59.001 38.462 0.00 0.00 0.00 0.86
2407 2410 7.502561 GGACTAATGGTTGCCTTGAGTTATATT 59.497 37.037 0.00 0.00 0.00 1.28
2408 2411 8.823220 ACTAATGGTTGCCTTGAGTTATATTT 57.177 30.769 0.00 0.00 0.00 1.40
2409 2412 8.686334 ACTAATGGTTGCCTTGAGTTATATTTG 58.314 33.333 0.00 0.00 0.00 2.32
2410 2413 7.716799 AATGGTTGCCTTGAGTTATATTTGA 57.283 32.000 0.00 0.00 0.00 2.69
2411 2414 7.716799 ATGGTTGCCTTGAGTTATATTTGAA 57.283 32.000 0.00 0.00 0.00 2.69
2412 2415 7.156876 TGGTTGCCTTGAGTTATATTTGAAG 57.843 36.000 0.00 0.00 0.00 3.02
2413 2416 6.152661 TGGTTGCCTTGAGTTATATTTGAAGG 59.847 38.462 0.00 0.00 34.30 3.46
2414 2417 6.377146 GGTTGCCTTGAGTTATATTTGAAGGA 59.623 38.462 0.00 0.00 33.17 3.36
2415 2418 7.068716 GGTTGCCTTGAGTTATATTTGAAGGAT 59.931 37.037 0.00 0.00 33.17 3.24
2416 2419 8.470002 GTTGCCTTGAGTTATATTTGAAGGATT 58.530 33.333 0.00 0.00 33.17 3.01
2417 2420 8.593945 TGCCTTGAGTTATATTTGAAGGATTT 57.406 30.769 0.00 0.00 33.17 2.17
2418 2421 8.469200 TGCCTTGAGTTATATTTGAAGGATTTG 58.531 33.333 0.00 0.00 33.17 2.32
2419 2422 8.470002 GCCTTGAGTTATATTTGAAGGATTTGT 58.530 33.333 0.00 0.00 33.17 2.83
2422 2425 9.527157 TTGAGTTATATTTGAAGGATTTGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
2423 2426 9.699410 TGAGTTATATTTGAAGGATTTGTCCAT 57.301 29.630 0.00 0.00 0.00 3.41
2427 2430 5.859205 ATTTGAAGGATTTGTCCATAGGC 57.141 39.130 0.00 0.00 0.00 3.93
2428 2431 4.314522 TTGAAGGATTTGTCCATAGGCA 57.685 40.909 0.00 0.00 0.00 4.75
2429 2432 4.524802 TGAAGGATTTGTCCATAGGCAT 57.475 40.909 0.00 0.00 0.00 4.40
2430 2433 4.870636 TGAAGGATTTGTCCATAGGCATT 58.129 39.130 0.00 0.00 0.00 3.56
2431 2434 5.271598 TGAAGGATTTGTCCATAGGCATTT 58.728 37.500 0.00 0.00 0.00 2.32
2432 2435 5.360714 TGAAGGATTTGTCCATAGGCATTTC 59.639 40.000 0.00 0.00 0.00 2.17
2433 2436 5.134725 AGGATTTGTCCATAGGCATTTCT 57.865 39.130 0.00 0.00 0.00 2.52
2434 2437 5.522641 AGGATTTGTCCATAGGCATTTCTT 58.477 37.500 0.00 0.00 0.00 2.52
2435 2438 5.361857 AGGATTTGTCCATAGGCATTTCTTG 59.638 40.000 0.00 0.00 0.00 3.02
2436 2439 5.360714 GGATTTGTCCATAGGCATTTCTTGA 59.639 40.000 0.00 0.00 0.00 3.02
2437 2440 6.127366 GGATTTGTCCATAGGCATTTCTTGAA 60.127 38.462 0.00 0.00 0.00 2.69
2438 2441 5.902613 TTGTCCATAGGCATTTCTTGAAG 57.097 39.130 0.00 0.00 0.00 3.02
2439 2442 4.922206 TGTCCATAGGCATTTCTTGAAGT 58.078 39.130 0.00 0.00 0.00 3.01
2440 2443 4.943705 TGTCCATAGGCATTTCTTGAAGTC 59.056 41.667 0.00 0.00 0.00 3.01
2441 2444 4.336713 GTCCATAGGCATTTCTTGAAGTCC 59.663 45.833 0.00 0.00 0.00 3.85
2442 2445 4.018506 TCCATAGGCATTTCTTGAAGTCCA 60.019 41.667 0.00 0.00 0.00 4.02
2443 2446 4.891756 CCATAGGCATTTCTTGAAGTCCAT 59.108 41.667 0.00 0.00 0.00 3.41
2444 2447 5.221185 CCATAGGCATTTCTTGAAGTCCATG 60.221 44.000 0.00 0.00 0.00 3.66
2445 2448 3.771216 AGGCATTTCTTGAAGTCCATGT 58.229 40.909 0.00 0.00 0.00 3.21
2446 2449 3.508793 AGGCATTTCTTGAAGTCCATGTG 59.491 43.478 0.00 0.00 0.00 3.21
2447 2450 3.256631 GGCATTTCTTGAAGTCCATGTGT 59.743 43.478 0.00 0.00 0.00 3.72
2448 2451 4.262164 GGCATTTCTTGAAGTCCATGTGTT 60.262 41.667 0.00 0.00 0.00 3.32
2449 2452 4.682860 GCATTTCTTGAAGTCCATGTGTTG 59.317 41.667 0.00 0.00 0.00 3.33
2451 2454 3.576078 TCTTGAAGTCCATGTGTTGGT 57.424 42.857 0.00 0.00 46.52 3.67
2452 2455 3.897239 TCTTGAAGTCCATGTGTTGGTT 58.103 40.909 0.00 0.00 46.52 3.67
2453 2456 4.277476 TCTTGAAGTCCATGTGTTGGTTT 58.723 39.130 0.00 0.00 46.52 3.27
2454 2457 4.338118 TCTTGAAGTCCATGTGTTGGTTTC 59.662 41.667 0.00 0.00 46.52 2.78
2455 2458 3.625853 TGAAGTCCATGTGTTGGTTTCA 58.374 40.909 8.94 8.94 46.52 2.69
2456 2459 4.019858 TGAAGTCCATGTGTTGGTTTCAA 58.980 39.130 9.97 0.00 46.52 2.69
2457 2460 4.097741 TGAAGTCCATGTGTTGGTTTCAAG 59.902 41.667 9.97 0.00 46.52 3.02
2458 2461 2.958355 AGTCCATGTGTTGGTTTCAAGG 59.042 45.455 0.00 0.00 46.52 3.61
2459 2462 2.955660 GTCCATGTGTTGGTTTCAAGGA 59.044 45.455 0.00 0.00 46.52 3.36
2460 2463 3.004734 GTCCATGTGTTGGTTTCAAGGAG 59.995 47.826 0.00 0.00 46.52 3.69
2461 2464 2.958355 CCATGTGTTGGTTTCAAGGAGT 59.042 45.455 0.00 0.00 40.99 3.85
2462 2465 3.384467 CCATGTGTTGGTTTCAAGGAGTT 59.616 43.478 0.00 0.00 40.99 3.01
2463 2466 4.141959 CCATGTGTTGGTTTCAAGGAGTTT 60.142 41.667 0.00 0.00 40.99 2.66
2464 2467 5.068460 CCATGTGTTGGTTTCAAGGAGTTTA 59.932 40.000 0.00 0.00 40.99 2.01
2465 2468 6.239289 CCATGTGTTGGTTTCAAGGAGTTTAT 60.239 38.462 0.00 0.00 40.99 1.40
2466 2469 6.142818 TGTGTTGGTTTCAAGGAGTTTATG 57.857 37.500 0.00 0.00 32.92 1.90
2467 2470 5.654650 TGTGTTGGTTTCAAGGAGTTTATGT 59.345 36.000 0.00 0.00 32.92 2.29
2468 2471 5.977129 GTGTTGGTTTCAAGGAGTTTATGTG 59.023 40.000 0.00 0.00 32.92 3.21
2469 2472 5.068460 TGTTGGTTTCAAGGAGTTTATGTGG 59.932 40.000 0.00 0.00 32.92 4.17
2470 2473 4.798882 TGGTTTCAAGGAGTTTATGTGGT 58.201 39.130 0.00 0.00 0.00 4.16
2471 2474 4.582656 TGGTTTCAAGGAGTTTATGTGGTG 59.417 41.667 0.00 0.00 0.00 4.17
2472 2475 4.825085 GGTTTCAAGGAGTTTATGTGGTGA 59.175 41.667 0.00 0.00 0.00 4.02
2473 2476 5.278315 GGTTTCAAGGAGTTTATGTGGTGAC 60.278 44.000 0.00 0.00 0.00 3.67
2474 2477 4.015872 TCAAGGAGTTTATGTGGTGACC 57.984 45.455 0.00 0.00 0.00 4.02
2475 2478 3.392947 TCAAGGAGTTTATGTGGTGACCA 59.607 43.478 0.00 0.00 0.00 4.02
2476 2479 4.141287 CAAGGAGTTTATGTGGTGACCAA 58.859 43.478 5.57 0.00 34.18 3.67
2477 2480 4.021102 AGGAGTTTATGTGGTGACCAAG 57.979 45.455 5.57 0.00 34.18 3.61
2478 2481 3.081804 GGAGTTTATGTGGTGACCAAGG 58.918 50.000 5.57 0.00 34.18 3.61
2479 2482 3.497942 GGAGTTTATGTGGTGACCAAGGT 60.498 47.826 5.57 0.00 34.18 3.50
2480 2483 3.486383 AGTTTATGTGGTGACCAAGGTG 58.514 45.455 5.57 0.00 34.18 4.00
2481 2484 3.117663 AGTTTATGTGGTGACCAAGGTGT 60.118 43.478 5.57 0.00 34.18 4.16
2482 2485 3.586470 TTATGTGGTGACCAAGGTGTT 57.414 42.857 5.57 0.00 34.18 3.32
2483 2486 4.708576 TTATGTGGTGACCAAGGTGTTA 57.291 40.909 5.57 0.00 34.18 2.41
2484 2487 3.806949 ATGTGGTGACCAAGGTGTTAT 57.193 42.857 5.57 0.00 34.18 1.89
2485 2488 3.586470 TGTGGTGACCAAGGTGTTATT 57.414 42.857 5.57 0.00 34.18 1.40
2486 2489 4.708576 TGTGGTGACCAAGGTGTTATTA 57.291 40.909 5.57 0.00 34.18 0.98
2487 2490 5.050126 TGTGGTGACCAAGGTGTTATTAA 57.950 39.130 5.57 0.00 34.18 1.40
2488 2491 5.067273 TGTGGTGACCAAGGTGTTATTAAG 58.933 41.667 5.57 0.00 34.18 1.85
2489 2492 4.457949 GTGGTGACCAAGGTGTTATTAAGG 59.542 45.833 5.57 0.00 34.18 2.69
2490 2493 4.351407 TGGTGACCAAGGTGTTATTAAGGA 59.649 41.667 0.00 0.00 0.00 3.36
2491 2494 5.163077 TGGTGACCAAGGTGTTATTAAGGAA 60.163 40.000 0.00 0.00 0.00 3.36
2492 2495 5.949952 GGTGACCAAGGTGTTATTAAGGAAT 59.050 40.000 0.00 0.00 0.00 3.01
2493 2496 6.436218 GGTGACCAAGGTGTTATTAAGGAATT 59.564 38.462 0.00 0.00 0.00 2.17
2494 2497 7.612633 GGTGACCAAGGTGTTATTAAGGAATTA 59.387 37.037 0.00 0.00 0.00 1.40
2495 2498 9.185680 GTGACCAAGGTGTTATTAAGGAATTAT 57.814 33.333 0.00 0.00 0.00 1.28
2496 2499 9.403583 TGACCAAGGTGTTATTAAGGAATTATC 57.596 33.333 0.00 0.00 0.00 1.75
2497 2500 8.762481 ACCAAGGTGTTATTAAGGAATTATCC 57.238 34.615 0.00 0.00 46.98 2.59
2517 2520 4.959596 CCAAAGATTGGTCATGTGAGAG 57.040 45.455 0.87 0.00 45.93 3.20
2518 2521 4.330250 CCAAAGATTGGTCATGTGAGAGT 58.670 43.478 0.87 0.00 45.93 3.24
2519 2522 5.491070 CCAAAGATTGGTCATGTGAGAGTA 58.509 41.667 0.87 0.00 45.93 2.59
2520 2523 5.583854 CCAAAGATTGGTCATGTGAGAGTAG 59.416 44.000 0.87 0.00 45.93 2.57
2521 2524 6.401394 CAAAGATTGGTCATGTGAGAGTAGA 58.599 40.000 0.00 0.00 0.00 2.59
2522 2525 5.850557 AGATTGGTCATGTGAGAGTAGAG 57.149 43.478 0.00 0.00 0.00 2.43
2523 2526 3.876274 TTGGTCATGTGAGAGTAGAGC 57.124 47.619 0.00 0.00 0.00 4.09
2524 2527 3.093057 TGGTCATGTGAGAGTAGAGCT 57.907 47.619 0.00 0.00 0.00 4.09
2525 2528 3.435275 TGGTCATGTGAGAGTAGAGCTT 58.565 45.455 0.00 0.00 0.00 3.74
2526 2529 4.600062 TGGTCATGTGAGAGTAGAGCTTA 58.400 43.478 0.00 0.00 0.00 3.09
2527 2530 5.204292 TGGTCATGTGAGAGTAGAGCTTAT 58.796 41.667 0.00 0.00 0.00 1.73
2528 2531 5.658634 TGGTCATGTGAGAGTAGAGCTTATT 59.341 40.000 0.00 0.00 0.00 1.40
2529 2532 5.982516 GGTCATGTGAGAGTAGAGCTTATTG 59.017 44.000 0.00 0.00 0.00 1.90
2530 2533 5.461737 GTCATGTGAGAGTAGAGCTTATTGC 59.538 44.000 0.00 0.00 43.29 3.56
2531 2534 5.127682 TCATGTGAGAGTAGAGCTTATTGCA 59.872 40.000 0.00 0.00 45.94 4.08
2532 2535 5.405935 TGTGAGAGTAGAGCTTATTGCAA 57.594 39.130 0.00 0.00 45.94 4.08
2533 2536 5.414360 TGTGAGAGTAGAGCTTATTGCAAG 58.586 41.667 4.94 0.00 45.94 4.01
2534 2537 4.269844 GTGAGAGTAGAGCTTATTGCAAGC 59.730 45.833 4.94 2.46 45.94 4.01
2535 2538 4.081476 TGAGAGTAGAGCTTATTGCAAGCA 60.081 41.667 11.29 0.00 45.30 3.91
2536 2539 5.033589 AGAGTAGAGCTTATTGCAAGCAT 57.966 39.130 11.29 2.34 45.30 3.79
2537 2540 4.815308 AGAGTAGAGCTTATTGCAAGCATG 59.185 41.667 11.29 2.60 45.30 4.06
2538 2541 4.521146 AGTAGAGCTTATTGCAAGCATGT 58.479 39.130 11.29 0.00 45.30 3.21
2539 2542 4.574013 AGTAGAGCTTATTGCAAGCATGTC 59.426 41.667 11.29 2.68 45.30 3.06
2540 2543 3.618351 AGAGCTTATTGCAAGCATGTCT 58.382 40.909 11.29 4.86 45.30 3.41
2541 2544 4.015084 AGAGCTTATTGCAAGCATGTCTT 58.985 39.130 11.29 0.00 45.30 3.01
2555 2558 6.497785 AGCATGTCTTGAAGAAGAAGATTG 57.502 37.500 0.00 0.00 40.00 2.67
2556 2559 6.002704 AGCATGTCTTGAAGAAGAAGATTGT 58.997 36.000 0.00 0.00 40.00 2.71
2557 2560 6.072618 AGCATGTCTTGAAGAAGAAGATTGTG 60.073 38.462 0.00 0.00 40.00 3.33
2558 2561 6.293845 GCATGTCTTGAAGAAGAAGATTGTGT 60.294 38.462 0.00 0.00 40.00 3.72
2559 2562 6.609237 TGTCTTGAAGAAGAAGATTGTGTG 57.391 37.500 0.00 0.00 40.00 3.82
2560 2563 6.348498 TGTCTTGAAGAAGAAGATTGTGTGA 58.652 36.000 0.00 0.00 40.00 3.58
2561 2564 6.994496 TGTCTTGAAGAAGAAGATTGTGTGAT 59.006 34.615 0.00 0.00 40.00 3.06
2562 2565 7.172190 TGTCTTGAAGAAGAAGATTGTGTGATC 59.828 37.037 0.00 0.00 40.00 2.92
2563 2566 7.172190 GTCTTGAAGAAGAAGATTGTGTGATCA 59.828 37.037 0.00 0.00 40.00 2.92
2564 2567 7.881751 TCTTGAAGAAGAAGATTGTGTGATCAT 59.118 33.333 0.00 0.00 35.14 2.45
2565 2568 7.991084 TGAAGAAGAAGATTGTGTGATCATT 57.009 32.000 0.00 0.00 0.00 2.57
2566 2569 8.037382 TGAAGAAGAAGATTGTGTGATCATTC 57.963 34.615 0.00 0.00 0.00 2.67
2567 2570 7.662669 TGAAGAAGAAGATTGTGTGATCATTCA 59.337 33.333 0.00 0.00 0.00 2.57
2568 2571 8.577048 AAGAAGAAGATTGTGTGATCATTCAT 57.423 30.769 0.00 0.00 33.56 2.57
2569 2572 7.986562 AGAAGAAGATTGTGTGATCATTCATG 58.013 34.615 0.00 0.00 33.56 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 4.578928 CCCTTCAACCGGGTTATTCTATTG 59.421 45.833 12.95 0.00 36.91 1.90
283 284 3.412237 TTGGTGTTAAGGTGGTAGCTC 57.588 47.619 0.00 0.00 0.00 4.09
670 671 5.569428 CGATGATCCCTGTTAAGCATCCATA 60.569 44.000 0.00 0.00 31.02 2.74
908 909 6.670695 AACCAAGGTCATTCTTTGCTAAAT 57.329 33.333 0.00 0.00 32.75 1.40
1039 1040 8.650490 TGTCTGATAATGAGCAAGGAATATACA 58.350 33.333 0.00 0.00 0.00 2.29
1092 1093 9.226606 TGAGATGGTAAATGAAAACGATTAGTT 57.773 29.630 0.00 0.00 46.76 2.24
1482 1485 0.249489 CCGATCTTACCTTGGCTCGG 60.249 60.000 0.00 0.00 39.58 4.63
1505 1508 2.287584 AGAAAAGGGTCCCATGATCCA 58.712 47.619 11.55 0.00 45.01 3.41
1597 1600 3.310774 CCTGACACGATTGCCTCTTTATG 59.689 47.826 0.00 0.00 0.00 1.90
1841 1844 1.084289 GTCGGTAAGGATTGCACCAC 58.916 55.000 0.00 0.00 29.70 4.16
2326 2329 1.212751 GGGCACCGCATGTTCTTTC 59.787 57.895 0.00 0.00 40.86 2.62
2327 2330 3.365535 GGGCACCGCATGTTCTTT 58.634 55.556 0.00 0.00 40.86 2.52
2339 2342 0.472044 AAAACCAAACATGGGGGCAC 59.528 50.000 0.00 0.00 0.00 5.01
2340 2343 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
2341 2344 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
2342 2345 1.135960 ACCAAAACCAAACATGGGGG 58.864 50.000 0.00 0.00 37.26 5.40
2343 2346 4.632327 ATTACCAAAACCAAACATGGGG 57.368 40.909 0.00 0.00 37.26 4.96
2344 2347 5.615289 TCAATTACCAAAACCAAACATGGG 58.385 37.500 0.00 0.00 37.26 4.00
2345 2348 6.933521 TCATCAATTACCAAAACCAAACATGG 59.066 34.615 0.00 0.00 38.91 3.66
2346 2349 7.440556 TGTCATCAATTACCAAAACCAAACATG 59.559 33.333 0.00 0.00 0.00 3.21
2347 2350 7.504403 TGTCATCAATTACCAAAACCAAACAT 58.496 30.769 0.00 0.00 0.00 2.71
2348 2351 6.878317 TGTCATCAATTACCAAAACCAAACA 58.122 32.000 0.00 0.00 0.00 2.83
2349 2352 7.778470 TTGTCATCAATTACCAAAACCAAAC 57.222 32.000 0.00 0.00 0.00 2.93
2350 2353 8.428063 AGATTGTCATCAATTACCAAAACCAAA 58.572 29.630 0.00 0.00 43.33 3.28
2351 2354 7.961351 AGATTGTCATCAATTACCAAAACCAA 58.039 30.769 0.00 0.00 43.33 3.67
2352 2355 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
2353 2356 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
2356 2359 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
2357 2360 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
2358 2361 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
2359 2362 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
2363 2366 9.722184 CATTAGTCCATAGAGATTGTCATCAAT 57.278 33.333 0.00 0.00 45.57 2.57
2364 2367 8.152898 CCATTAGTCCATAGAGATTGTCATCAA 58.847 37.037 0.00 0.00 37.98 2.57
2365 2368 7.290948 ACCATTAGTCCATAGAGATTGTCATCA 59.709 37.037 0.00 0.00 0.00 3.07
2366 2369 7.675062 ACCATTAGTCCATAGAGATTGTCATC 58.325 38.462 0.00 0.00 0.00 2.92
2367 2370 7.623999 ACCATTAGTCCATAGAGATTGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
2368 2371 7.275183 CAACCATTAGTCCATAGAGATTGTCA 58.725 38.462 0.00 0.00 0.00 3.58
2369 2372 6.203723 GCAACCATTAGTCCATAGAGATTGTC 59.796 42.308 0.00 0.00 0.00 3.18
2370 2373 6.058183 GCAACCATTAGTCCATAGAGATTGT 58.942 40.000 0.00 0.00 0.00 2.71
2371 2374 5.471456 GGCAACCATTAGTCCATAGAGATTG 59.529 44.000 0.00 0.00 0.00 2.67
2372 2375 5.370880 AGGCAACCATTAGTCCATAGAGATT 59.629 40.000 0.00 0.00 37.17 2.40
2373 2376 4.910304 AGGCAACCATTAGTCCATAGAGAT 59.090 41.667 0.00 0.00 37.17 2.75
2374 2377 4.298626 AGGCAACCATTAGTCCATAGAGA 58.701 43.478 0.00 0.00 37.17 3.10
2375 2378 4.696479 AGGCAACCATTAGTCCATAGAG 57.304 45.455 0.00 0.00 37.17 2.43
2376 2379 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
2377 2380 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
2378 2381 4.227300 ACTCAAGGCAACCATTAGTCCATA 59.773 41.667 0.00 0.00 37.17 2.74
2379 2382 3.010584 ACTCAAGGCAACCATTAGTCCAT 59.989 43.478 0.00 0.00 37.17 3.41
2380 2383 2.375174 ACTCAAGGCAACCATTAGTCCA 59.625 45.455 0.00 0.00 37.17 4.02
2381 2384 3.073274 ACTCAAGGCAACCATTAGTCC 57.927 47.619 0.00 0.00 37.17 3.85
2382 2385 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
2383 2386 8.686334 CAAATATAACTCAAGGCAACCATTAGT 58.314 33.333 0.00 0.00 37.17 2.24
2384 2387 8.902806 TCAAATATAACTCAAGGCAACCATTAG 58.097 33.333 0.00 0.00 37.17 1.73
2385 2388 8.815565 TCAAATATAACTCAAGGCAACCATTA 57.184 30.769 0.00 0.00 37.17 1.90
2386 2389 7.716799 TCAAATATAACTCAAGGCAACCATT 57.283 32.000 0.00 0.00 37.17 3.16
2387 2390 7.147846 CCTTCAAATATAACTCAAGGCAACCAT 60.148 37.037 0.00 0.00 37.17 3.55
2388 2391 6.152661 CCTTCAAATATAACTCAAGGCAACCA 59.847 38.462 0.00 0.00 37.17 3.67
2389 2392 6.377146 TCCTTCAAATATAACTCAAGGCAACC 59.623 38.462 0.00 0.00 32.00 3.77
2390 2393 7.391148 TCCTTCAAATATAACTCAAGGCAAC 57.609 36.000 0.00 0.00 32.00 4.17
2391 2394 8.593945 AATCCTTCAAATATAACTCAAGGCAA 57.406 30.769 0.00 0.00 32.00 4.52
2392 2395 8.469200 CAAATCCTTCAAATATAACTCAAGGCA 58.531 33.333 0.00 0.00 32.00 4.75
2393 2396 8.470002 ACAAATCCTTCAAATATAACTCAAGGC 58.530 33.333 0.00 0.00 32.00 4.35
2396 2399 9.527157 TGGACAAATCCTTCAAATATAACTCAA 57.473 29.630 0.00 0.00 46.43 3.02
2397 2400 9.699410 ATGGACAAATCCTTCAAATATAACTCA 57.301 29.630 0.00 0.00 46.43 3.41
2401 2404 9.077885 GCCTATGGACAAATCCTTCAAATATAA 57.922 33.333 0.00 0.00 46.43 0.98
2402 2405 8.224025 TGCCTATGGACAAATCCTTCAAATATA 58.776 33.333 0.00 0.00 46.43 0.86
2403 2406 7.068702 TGCCTATGGACAAATCCTTCAAATAT 58.931 34.615 0.00 0.00 46.43 1.28
2404 2407 6.430864 TGCCTATGGACAAATCCTTCAAATA 58.569 36.000 0.00 0.00 46.43 1.40
2405 2408 5.271598 TGCCTATGGACAAATCCTTCAAAT 58.728 37.500 0.00 0.00 46.43 2.32
2406 2409 4.671831 TGCCTATGGACAAATCCTTCAAA 58.328 39.130 0.00 0.00 46.43 2.69
2407 2410 4.314522 TGCCTATGGACAAATCCTTCAA 57.685 40.909 0.00 0.00 46.43 2.69
2408 2411 4.524802 ATGCCTATGGACAAATCCTTCA 57.475 40.909 0.00 0.00 46.43 3.02
2409 2412 5.595952 AGAAATGCCTATGGACAAATCCTTC 59.404 40.000 0.00 0.00 46.43 3.46
2410 2413 5.522641 AGAAATGCCTATGGACAAATCCTT 58.477 37.500 0.00 0.00 46.43 3.36
2411 2414 5.134725 AGAAATGCCTATGGACAAATCCT 57.865 39.130 0.00 0.00 46.43 3.24
2412 2415 5.360714 TCAAGAAATGCCTATGGACAAATCC 59.639 40.000 0.00 0.00 46.48 3.01
2413 2416 6.455360 TCAAGAAATGCCTATGGACAAATC 57.545 37.500 0.00 0.00 0.00 2.17
2414 2417 6.438425 ACTTCAAGAAATGCCTATGGACAAAT 59.562 34.615 0.00 0.00 0.00 2.32
2415 2418 5.774690 ACTTCAAGAAATGCCTATGGACAAA 59.225 36.000 0.00 0.00 0.00 2.83
2416 2419 5.324409 ACTTCAAGAAATGCCTATGGACAA 58.676 37.500 0.00 0.00 0.00 3.18
2417 2420 4.922206 ACTTCAAGAAATGCCTATGGACA 58.078 39.130 0.00 0.00 0.00 4.02
2418 2421 4.336713 GGACTTCAAGAAATGCCTATGGAC 59.663 45.833 0.00 0.00 0.00 4.02
2419 2422 4.018506 TGGACTTCAAGAAATGCCTATGGA 60.019 41.667 0.00 0.00 0.00 3.41
2420 2423 4.272489 TGGACTTCAAGAAATGCCTATGG 58.728 43.478 0.00 0.00 0.00 2.74
2421 2424 5.359009 ACATGGACTTCAAGAAATGCCTATG 59.641 40.000 0.00 0.00 0.00 2.23
2422 2425 5.359009 CACATGGACTTCAAGAAATGCCTAT 59.641 40.000 0.00 0.00 0.00 2.57
2423 2426 4.701651 CACATGGACTTCAAGAAATGCCTA 59.298 41.667 0.00 0.00 0.00 3.93
2424 2427 3.508793 CACATGGACTTCAAGAAATGCCT 59.491 43.478 0.00 0.00 0.00 4.75
2425 2428 3.256631 ACACATGGACTTCAAGAAATGCC 59.743 43.478 0.00 0.00 0.00 4.40
2426 2429 4.510038 ACACATGGACTTCAAGAAATGC 57.490 40.909 0.00 0.00 0.00 3.56
2441 2444 4.654091 AACTCCTTGAAACCAACACATG 57.346 40.909 0.00 0.00 0.00 3.21
2442 2445 6.323739 ACATAAACTCCTTGAAACCAACACAT 59.676 34.615 0.00 0.00 0.00 3.21
2443 2446 5.654650 ACATAAACTCCTTGAAACCAACACA 59.345 36.000 0.00 0.00 0.00 3.72
2444 2447 5.977129 CACATAAACTCCTTGAAACCAACAC 59.023 40.000 0.00 0.00 0.00 3.32
2445 2448 5.068460 CCACATAAACTCCTTGAAACCAACA 59.932 40.000 0.00 0.00 0.00 3.33
2446 2449 5.068591 ACCACATAAACTCCTTGAAACCAAC 59.931 40.000 0.00 0.00 0.00 3.77
2447 2450 5.068460 CACCACATAAACTCCTTGAAACCAA 59.932 40.000 0.00 0.00 0.00 3.67
2448 2451 4.582656 CACCACATAAACTCCTTGAAACCA 59.417 41.667 0.00 0.00 0.00 3.67
2449 2452 4.825085 TCACCACATAAACTCCTTGAAACC 59.175 41.667 0.00 0.00 0.00 3.27
2450 2453 5.278315 GGTCACCACATAAACTCCTTGAAAC 60.278 44.000 0.00 0.00 0.00 2.78
2451 2454 4.825085 GGTCACCACATAAACTCCTTGAAA 59.175 41.667 0.00 0.00 0.00 2.69
2452 2455 4.141367 TGGTCACCACATAAACTCCTTGAA 60.141 41.667 0.00 0.00 0.00 2.69
2453 2456 3.392947 TGGTCACCACATAAACTCCTTGA 59.607 43.478 0.00 0.00 0.00 3.02
2454 2457 3.750371 TGGTCACCACATAAACTCCTTG 58.250 45.455 0.00 0.00 0.00 3.61
2455 2458 4.398319 CTTGGTCACCACATAAACTCCTT 58.602 43.478 0.00 0.00 30.78 3.36
2456 2459 3.244911 CCTTGGTCACCACATAAACTCCT 60.245 47.826 0.00 0.00 30.78 3.69
2457 2460 3.081804 CCTTGGTCACCACATAAACTCC 58.918 50.000 0.00 0.00 30.78 3.85
2458 2461 3.502211 CACCTTGGTCACCACATAAACTC 59.498 47.826 0.00 0.00 30.78 3.01
2459 2462 3.117663 ACACCTTGGTCACCACATAAACT 60.118 43.478 0.00 0.00 30.78 2.66
2460 2463 3.219281 ACACCTTGGTCACCACATAAAC 58.781 45.455 0.00 0.00 30.78 2.01
2461 2464 3.586470 ACACCTTGGTCACCACATAAA 57.414 42.857 0.00 0.00 30.78 1.40
2462 2465 3.586470 AACACCTTGGTCACCACATAA 57.414 42.857 0.00 0.00 30.78 1.90
2463 2466 4.919774 ATAACACCTTGGTCACCACATA 57.080 40.909 0.00 0.00 30.78 2.29
2464 2467 3.806949 ATAACACCTTGGTCACCACAT 57.193 42.857 0.00 0.00 30.78 3.21
2465 2468 3.586470 AATAACACCTTGGTCACCACA 57.414 42.857 0.00 0.00 30.78 4.17
2466 2469 4.457949 CCTTAATAACACCTTGGTCACCAC 59.542 45.833 0.00 0.00 30.78 4.16
2467 2470 4.351407 TCCTTAATAACACCTTGGTCACCA 59.649 41.667 0.00 0.00 0.00 4.17
2468 2471 4.913784 TCCTTAATAACACCTTGGTCACC 58.086 43.478 0.00 0.00 0.00 4.02
2469 2472 7.462571 AATTCCTTAATAACACCTTGGTCAC 57.537 36.000 0.00 0.00 0.00 3.67
2470 2473 9.403583 GATAATTCCTTAATAACACCTTGGTCA 57.596 33.333 0.00 0.00 0.00 4.02
2471 2474 8.847196 GGATAATTCCTTAATAACACCTTGGTC 58.153 37.037 0.00 0.00 39.14 4.02
2472 2475 8.340757 TGGATAATTCCTTAATAACACCTTGGT 58.659 33.333 0.00 0.00 43.07 3.67
2473 2476 8.760980 TGGATAATTCCTTAATAACACCTTGG 57.239 34.615 0.00 0.00 43.07 3.61
2497 2500 6.401394 TCTACTCTCACATGACCAATCTTTG 58.599 40.000 0.00 0.00 0.00 2.77
2498 2501 6.611613 TCTACTCTCACATGACCAATCTTT 57.388 37.500 0.00 0.00 0.00 2.52
2499 2502 5.395103 GCTCTACTCTCACATGACCAATCTT 60.395 44.000 0.00 0.00 0.00 2.40
2500 2503 4.099266 GCTCTACTCTCACATGACCAATCT 59.901 45.833 0.00 0.00 0.00 2.40
2501 2504 4.099266 AGCTCTACTCTCACATGACCAATC 59.901 45.833 0.00 0.00 0.00 2.67
2502 2505 4.029520 AGCTCTACTCTCACATGACCAAT 58.970 43.478 0.00 0.00 0.00 3.16
2503 2506 3.435275 AGCTCTACTCTCACATGACCAA 58.565 45.455 0.00 0.00 0.00 3.67
2504 2507 3.093057 AGCTCTACTCTCACATGACCA 57.907 47.619 0.00 0.00 0.00 4.02
2505 2508 5.782893 ATAAGCTCTACTCTCACATGACC 57.217 43.478 0.00 0.00 0.00 4.02
2506 2509 5.461737 GCAATAAGCTCTACTCTCACATGAC 59.538 44.000 0.00 0.00 41.15 3.06
2507 2510 5.127682 TGCAATAAGCTCTACTCTCACATGA 59.872 40.000 0.00 0.00 45.94 3.07
2508 2511 5.354767 TGCAATAAGCTCTACTCTCACATG 58.645 41.667 0.00 0.00 45.94 3.21
2509 2512 5.604758 TGCAATAAGCTCTACTCTCACAT 57.395 39.130 0.00 0.00 45.94 3.21
2510 2513 5.405935 TTGCAATAAGCTCTACTCTCACA 57.594 39.130 0.00 0.00 45.94 3.58
2511 2514 4.269844 GCTTGCAATAAGCTCTACTCTCAC 59.730 45.833 0.00 0.00 45.94 3.51
2512 2515 4.081476 TGCTTGCAATAAGCTCTACTCTCA 60.081 41.667 10.10 0.00 45.94 3.27
2513 2516 4.437239 TGCTTGCAATAAGCTCTACTCTC 58.563 43.478 10.10 0.00 45.94 3.20
2514 2517 4.478206 TGCTTGCAATAAGCTCTACTCT 57.522 40.909 10.10 0.00 45.94 3.24
2515 2518 4.574013 ACATGCTTGCAATAAGCTCTACTC 59.426 41.667 10.10 0.00 45.94 2.59
2516 2519 4.521146 ACATGCTTGCAATAAGCTCTACT 58.479 39.130 10.10 0.00 45.94 2.57
2517 2520 4.574013 AGACATGCTTGCAATAAGCTCTAC 59.426 41.667 10.10 0.93 45.94 2.59
2518 2521 4.774124 AGACATGCTTGCAATAAGCTCTA 58.226 39.130 10.10 0.00 45.94 2.43
2519 2522 3.618351 AGACATGCTTGCAATAAGCTCT 58.382 40.909 10.10 2.48 45.94 4.09
2520 2523 4.103357 CAAGACATGCTTGCAATAAGCTC 58.897 43.478 14.20 0.27 46.67 4.09
2521 2524 4.106029 CAAGACATGCTTGCAATAAGCT 57.894 40.909 14.20 0.00 46.67 3.74
2531 2534 6.489361 ACAATCTTCTTCTTCAAGACATGCTT 59.511 34.615 0.00 0.00 38.44 3.91
2532 2535 6.002704 ACAATCTTCTTCTTCAAGACATGCT 58.997 36.000 0.00 0.00 38.44 3.79
2533 2536 6.084925 CACAATCTTCTTCTTCAAGACATGC 58.915 40.000 0.00 0.00 38.44 4.06
2534 2537 7.041576 TCACACAATCTTCTTCTTCAAGACATG 60.042 37.037 0.00 0.00 38.44 3.21
2535 2538 6.994496 TCACACAATCTTCTTCTTCAAGACAT 59.006 34.615 0.00 0.00 38.44 3.06
2536 2539 6.348498 TCACACAATCTTCTTCTTCAAGACA 58.652 36.000 0.00 0.00 38.44 3.41
2537 2540 6.851222 TCACACAATCTTCTTCTTCAAGAC 57.149 37.500 0.00 0.00 38.44 3.01
2538 2541 7.219322 TGATCACACAATCTTCTTCTTCAAGA 58.781 34.615 0.00 0.00 36.82 3.02
2539 2542 7.430992 TGATCACACAATCTTCTTCTTCAAG 57.569 36.000 0.00 0.00 0.00 3.02
2540 2543 7.991084 ATGATCACACAATCTTCTTCTTCAA 57.009 32.000 0.00 0.00 0.00 2.69
2541 2544 7.662669 TGAATGATCACACAATCTTCTTCTTCA 59.337 33.333 0.00 0.00 0.00 3.02
2542 2545 8.037382 TGAATGATCACACAATCTTCTTCTTC 57.963 34.615 0.00 0.00 0.00 2.87
2543 2546 7.991084 TGAATGATCACACAATCTTCTTCTT 57.009 32.000 0.00 0.00 0.00 2.52
2544 2547 7.986562 CATGAATGATCACACAATCTTCTTCT 58.013 34.615 0.00 0.00 38.69 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.