Multiple sequence alignment - TraesCS6D01G174200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G174200 chr6D 100.000 5001 0 0 1 5001 163329162 163334162 0.000000e+00 9236.0
1 TraesCS6D01G174200 chr6D 91.638 1172 90 6 2217 3384 400990276 400991443 0.000000e+00 1615.0
2 TraesCS6D01G174200 chr6A 94.859 2237 78 15 2 2219 223550798 223553016 0.000000e+00 3459.0
3 TraesCS6D01G174200 chr6A 94.997 1639 49 12 3381 5001 223553009 223554632 0.000000e+00 2542.0
4 TraesCS6D01G174200 chr6B 94.234 1665 67 11 568 2219 298827348 298825700 0.000000e+00 2516.0
5 TraesCS6D01G174200 chr6B 95.156 578 14 6 1 575 298828884 298828318 0.000000e+00 900.0
6 TraesCS6D01G174200 chr6B 89.811 687 50 14 3381 4058 298825707 298825032 0.000000e+00 863.0
7 TraesCS6D01G174200 chr4D 94.421 1165 60 5 2218 3378 184616692 184615529 0.000000e+00 1786.0
8 TraesCS6D01G174200 chr4D 93.310 1166 74 4 2217 3380 378113591 378112428 0.000000e+00 1718.0
9 TraesCS6D01G174200 chr5D 92.894 1168 72 7 2215 3380 451072128 451070970 0.000000e+00 1687.0
10 TraesCS6D01G174200 chr5D 92.618 1165 82 4 2217 3380 492481512 492482673 0.000000e+00 1672.0
11 TraesCS6D01G174200 chr5D 91.852 1166 88 7 2217 3381 220328980 220330139 0.000000e+00 1620.0
12 TraesCS6D01G174200 chr3D 91.922 1176 91 3 2217 3390 401456925 401458098 0.000000e+00 1642.0
13 TraesCS6D01G174200 chr1D 92.110 1166 86 6 2217 3380 313389339 313388178 0.000000e+00 1639.0
14 TraesCS6D01G174200 chr7D 92.031 1167 88 5 2217 3382 401213182 401214344 0.000000e+00 1635.0
15 TraesCS6D01G174200 chr7D 95.238 42 0 2 4753 4794 602266424 602266385 1.160000e-06 65.8
16 TraesCS6D01G174200 chr7A 86.066 244 32 2 3796 4038 106926321 106926079 1.380000e-65 261.0
17 TraesCS6D01G174200 chrUn 100.000 38 0 0 4753 4790 19198768 19198805 2.500000e-08 71.3
18 TraesCS6D01G174200 chr3B 95.455 44 1 1 4751 4794 237334286 237334328 8.980000e-08 69.4
19 TraesCS6D01G174200 chr5B 95.349 43 1 1 4753 4795 428128994 428128953 3.230000e-07 67.6
20 TraesCS6D01G174200 chr4B 97.500 40 0 1 4751 4789 615160735 615160774 3.230000e-07 67.6
21 TraesCS6D01G174200 chr2D 95.238 42 0 2 4753 4794 247830358 247830397 1.160000e-06 65.8
22 TraesCS6D01G174200 chr2B 95.238 42 0 2 4753 4794 323085372 323085411 1.160000e-06 65.8
23 TraesCS6D01G174200 chr2A 95.238 42 0 2 4753 4794 285622300 285622339 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G174200 chr6D 163329162 163334162 5000 False 9236.000000 9236 100.000 1 5001 1 chr6D.!!$F1 5000
1 TraesCS6D01G174200 chr6D 400990276 400991443 1167 False 1615.000000 1615 91.638 2217 3384 1 chr6D.!!$F2 1167
2 TraesCS6D01G174200 chr6A 223550798 223554632 3834 False 3000.500000 3459 94.928 2 5001 2 chr6A.!!$F1 4999
3 TraesCS6D01G174200 chr6B 298825032 298828884 3852 True 1426.333333 2516 93.067 1 4058 3 chr6B.!!$R1 4057
4 TraesCS6D01G174200 chr4D 184615529 184616692 1163 True 1786.000000 1786 94.421 2218 3378 1 chr4D.!!$R1 1160
5 TraesCS6D01G174200 chr4D 378112428 378113591 1163 True 1718.000000 1718 93.310 2217 3380 1 chr4D.!!$R2 1163
6 TraesCS6D01G174200 chr5D 451070970 451072128 1158 True 1687.000000 1687 92.894 2215 3380 1 chr5D.!!$R1 1165
7 TraesCS6D01G174200 chr5D 492481512 492482673 1161 False 1672.000000 1672 92.618 2217 3380 1 chr5D.!!$F2 1163
8 TraesCS6D01G174200 chr5D 220328980 220330139 1159 False 1620.000000 1620 91.852 2217 3381 1 chr5D.!!$F1 1164
9 TraesCS6D01G174200 chr3D 401456925 401458098 1173 False 1642.000000 1642 91.922 2217 3390 1 chr3D.!!$F1 1173
10 TraesCS6D01G174200 chr1D 313388178 313389339 1161 True 1639.000000 1639 92.110 2217 3380 1 chr1D.!!$R1 1163
11 TraesCS6D01G174200 chr7D 401213182 401214344 1162 False 1635.000000 1635 92.031 2217 3382 1 chr7D.!!$F1 1165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 364 1.356124 TTCAGAGAGCAGGGAAGCTT 58.644 50.0 0.0 0.0 46.75 3.74 F
1026 2021 0.324943 CGCAGGAAGGAAGGAAAGGA 59.675 55.0 0.0 0.0 0.00 3.36 F
1094 2089 0.396811 ACGCAGGTGCCTACTTTCTT 59.603 50.0 0.0 0.0 37.91 2.52 F
1804 2799 0.994247 ATGCCCACTTCAGATGGACA 59.006 50.0 0.0 0.0 39.87 4.02 F
3264 4276 0.320771 TCTGGCCGTCTTGAGCTTTC 60.321 55.0 0.0 0.0 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2974 0.106819 GATCCTGCAGAGGCCAACAT 60.107 55.000 17.39 0.00 39.57 2.71 R
3176 4187 1.035932 CCCTGGCAAGATCCTTGCTG 61.036 60.000 24.96 18.76 44.36 4.41 R
3177 4188 1.305623 CCCTGGCAAGATCCTTGCT 59.694 57.895 24.96 0.00 44.36 3.91 R
3503 4524 1.596496 AGCCAAGGTAGCCAGGTTAT 58.404 50.000 2.66 0.00 0.00 1.89 R
4653 5689 1.772453 TCTGTTTCCCGAAAAGGAGGT 59.228 47.619 0.00 0.00 45.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 170 7.935520 TGTAAGCACAACAATGTAGATGAAAA 58.064 30.769 0.00 0.00 37.82 2.29
235 239 2.872245 ACACCATGAACGTGAGAAACAG 59.128 45.455 7.48 0.00 35.17 3.16
319 323 3.991605 ACTGCGAGTTGTTTTATAGCG 57.008 42.857 0.00 0.00 0.00 4.26
360 364 1.356124 TTCAGAGAGCAGGGAAGCTT 58.644 50.000 0.00 0.00 46.75 3.74
409 414 6.477033 AGCATCTTCAGTTCATGAATACGTAC 59.523 38.462 12.12 0.00 46.71 3.67
732 1714 3.282831 CCAATCGGTGGTTTTCTGAAC 57.717 47.619 0.00 0.00 43.20 3.18
781 1765 7.386059 ACTGATGTAGTGTCATATGTCAACAA 58.614 34.615 10.22 0.00 38.49 2.83
782 1766 7.547019 ACTGATGTAGTGTCATATGTCAACAAG 59.453 37.037 10.22 7.69 38.49 3.16
829 1821 3.042682 TGGAAGTTTCAGGGACACTACA 58.957 45.455 0.00 0.00 0.00 2.74
947 1939 3.236816 GTGCATCCATTTGTTCAAGACG 58.763 45.455 0.00 0.00 0.00 4.18
968 1960 5.149977 ACGTACGAGCTTGTTAAGTTCTAC 58.850 41.667 24.41 0.42 36.69 2.59
1026 2021 0.324943 CGCAGGAAGGAAGGAAAGGA 59.675 55.000 0.00 0.00 0.00 3.36
1047 2042 2.532250 TACCATCTCTGCTGTCCTCA 57.468 50.000 0.00 0.00 0.00 3.86
1094 2089 0.396811 ACGCAGGTGCCTACTTTCTT 59.603 50.000 0.00 0.00 37.91 2.52
1107 2102 9.032420 GTGCCTACTTTCTTTGTATATAGTCAC 57.968 37.037 0.00 0.00 0.00 3.67
1151 2146 9.546428 AAGCTTGTTATCTTTAATTTGCAAGTT 57.454 25.926 12.16 12.16 35.76 2.66
1152 2147 9.546428 AGCTTGTTATCTTTAATTTGCAAGTTT 57.454 25.926 12.75 7.18 35.76 2.66
1208 2203 5.518128 CCACTGATAGAACTGAGAAACATCG 59.482 44.000 0.00 0.00 0.00 3.84
1219 2214 4.825422 TGAGAAACATCGCTGAGAAAGAT 58.175 39.130 0.00 0.00 0.00 2.40
1255 2250 2.947243 GCTGATTGGGAAGATTGAGCCA 60.947 50.000 0.00 0.00 0.00 4.75
1261 2256 2.580322 TGGGAAGATTGAGCCATACCAA 59.420 45.455 0.00 0.00 0.00 3.67
1282 2277 1.003696 CCCCTTTCCTCTGTGAAGGAC 59.996 57.143 3.05 0.00 45.20 3.85
1304 2299 2.046507 GTGCTCTCAGGTGGCTGG 60.047 66.667 0.00 0.00 0.00 4.85
1804 2799 0.994247 ATGCCCACTTCAGATGGACA 59.006 50.000 0.00 0.00 39.87 4.02
1837 2832 9.048446 TGGTAACACAGTCTATTTGAACTAAAC 57.952 33.333 0.00 0.00 46.17 2.01
2018 3013 2.425312 TCACACTTCCATGCAACGTTTT 59.575 40.909 0.00 0.00 0.00 2.43
2847 3850 3.818787 GAACGGCGGCGGAGACTA 61.819 66.667 35.05 0.00 0.00 2.59
3192 4203 1.000521 CCCAGCAAGGATCTTGCCA 60.001 57.895 23.71 0.00 45.98 4.92
3264 4276 0.320771 TCTGGCCGTCTTGAGCTTTC 60.321 55.000 0.00 0.00 0.00 2.62
3265 4277 0.603707 CTGGCCGTCTTGAGCTTTCA 60.604 55.000 0.00 0.00 0.00 2.69
3385 4397 3.070446 TCTTTTGTACACCGACACCATCT 59.930 43.478 0.00 0.00 0.00 2.90
3439 4451 3.569701 GTCCAGTGATTTCAGGCAAGAAA 59.430 43.478 7.44 7.44 41.31 2.52
3440 4452 3.569701 TCCAGTGATTTCAGGCAAGAAAC 59.430 43.478 7.20 3.75 40.03 2.78
3441 4453 3.571401 CCAGTGATTTCAGGCAAGAAACT 59.429 43.478 7.20 0.00 40.03 2.66
3503 4524 5.711506 AGACATGTTTGGTTATGCTCATCAA 59.288 36.000 0.00 0.00 0.00 2.57
3519 4540 4.780815 TCATCAATAACCTGGCTACCTTG 58.219 43.478 0.00 0.00 0.00 3.61
3530 4555 3.763897 CTGGCTACCTTGGCTTGTAAATT 59.236 43.478 0.00 0.00 0.00 1.82
3531 4556 4.924625 TGGCTACCTTGGCTTGTAAATTA 58.075 39.130 0.00 0.00 0.00 1.40
3532 4557 5.515106 TGGCTACCTTGGCTTGTAAATTAT 58.485 37.500 0.00 0.00 0.00 1.28
3563 4588 3.903530 TCCCTGCCTATGATCTGTAGA 57.096 47.619 7.13 0.00 0.00 2.59
3829 4856 7.545615 TGCTACAGTGAATGCTATATAAATCCG 59.454 37.037 0.00 0.00 0.00 4.18
3852 4880 6.159293 CGCTTATTATGCAGTCCTCTGATTA 58.841 40.000 0.00 0.00 43.76 1.75
4008 5036 3.341823 ACATGACCTTCTGATGTTCAGC 58.658 45.455 0.00 0.00 43.95 4.26
4154 5182 4.281182 CAGGTTACAGAGGATAGCGGTATT 59.719 45.833 8.79 0.00 0.00 1.89
4155 5183 4.900054 AGGTTACAGAGGATAGCGGTATTT 59.100 41.667 8.79 0.43 0.00 1.40
4158 5186 7.234988 AGGTTACAGAGGATAGCGGTATTTTAT 59.765 37.037 8.79 0.00 0.00 1.40
4160 5188 8.709646 GTTACAGAGGATAGCGGTATTTTATTG 58.290 37.037 8.79 6.98 0.00 1.90
4161 5189 6.231211 ACAGAGGATAGCGGTATTTTATTGG 58.769 40.000 8.79 0.00 0.00 3.16
4163 5191 5.309806 AGAGGATAGCGGTATTTTATTGGGT 59.690 40.000 8.79 0.00 0.00 4.51
4164 5192 5.313712 AGGATAGCGGTATTTTATTGGGTG 58.686 41.667 8.79 0.00 0.00 4.61
4165 5193 5.067954 GGATAGCGGTATTTTATTGGGTGT 58.932 41.667 8.79 0.00 0.00 4.16
4166 5194 5.533528 GGATAGCGGTATTTTATTGGGTGTT 59.466 40.000 8.79 0.00 0.00 3.32
4167 5195 6.040054 GGATAGCGGTATTTTATTGGGTGTTT 59.960 38.462 8.79 0.00 0.00 2.83
4168 5196 5.066968 AGCGGTATTTTATTGGGTGTTTG 57.933 39.130 0.00 0.00 0.00 2.93
4169 5197 4.081917 AGCGGTATTTTATTGGGTGTTTGG 60.082 41.667 0.00 0.00 0.00 3.28
4170 5198 4.322123 GCGGTATTTTATTGGGTGTTTGGT 60.322 41.667 0.00 0.00 0.00 3.67
4220 5248 2.415624 TGATCCATCAAGAGCCCTCAT 58.584 47.619 0.00 0.00 33.08 2.90
4316 5344 7.487829 GTGAGTTAAGTTCAGAGCTAGAATCTG 59.512 40.741 15.72 15.72 44.57 2.90
4379 5407 4.579869 ACTTGTCCATCACCATACTGTTC 58.420 43.478 0.00 0.00 0.00 3.18
4436 5465 7.530010 ACAAATCAAATTTACTGAGACATCCG 58.470 34.615 0.00 0.00 0.00 4.18
4466 5495 2.308570 TCTGGTATTCTGCCCAACATGT 59.691 45.455 0.00 0.00 0.00 3.21
4470 5499 4.013728 GGTATTCTGCCCAACATGTAACA 58.986 43.478 0.00 0.00 0.00 2.41
4502 5531 5.206587 GACCCTAACTGTCATAGGACCTAA 58.793 45.833 5.03 0.00 43.65 2.69
4561 5590 3.249189 AAGCAGGGCCGTCCTCAA 61.249 61.111 0.00 0.00 46.12 3.02
4566 5595 0.811281 CAGGGCCGTCCTCAAAAATC 59.189 55.000 0.00 0.00 46.12 2.17
4567 5596 0.404040 AGGGCCGTCCTCAAAAATCA 59.596 50.000 0.00 0.00 44.06 2.57
4670 5706 5.336213 GGATTAAACCTCCTTTTCGGGAAAC 60.336 44.000 0.00 0.00 34.66 2.78
4844 5880 0.101759 CGGCATCCTTCTGGCATTTG 59.898 55.000 0.00 0.00 41.51 2.32
4914 5950 3.325135 AGAGGAAATAATACCAGGCGAGG 59.675 47.826 0.00 0.00 0.00 4.63
4939 5975 6.866770 GTCGACGGATATCCATGAAAGAATAA 59.133 38.462 21.70 0.00 35.14 1.40
4940 5976 7.384115 GTCGACGGATATCCATGAAAGAATAAA 59.616 37.037 21.70 0.00 35.14 1.40
4946 5982 7.398332 GGATATCCATGAAAGAATAAAGGGCAT 59.602 37.037 17.34 0.00 35.64 4.40
4962 5998 5.972107 AGGGCATCATTATTGCTAATGTC 57.028 39.130 5.81 0.00 43.15 3.06
4988 6024 2.169352 TCTAAGAGCAACTCCATCAGGC 59.831 50.000 0.00 0.00 33.74 4.85
4991 6027 1.919600 GAGCAACTCCATCAGGCCCT 61.920 60.000 0.00 0.00 33.74 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 194 8.548721 GTGTATCGGATTATTACAAGGAAACAG 58.451 37.037 0.00 0.00 0.00 3.16
193 196 7.496591 TGGTGTATCGGATTATTACAAGGAAAC 59.503 37.037 0.00 0.00 0.00 2.78
235 239 4.974888 AGTCAGTCGTCTTTAAGAAACGTC 59.025 41.667 0.00 0.00 37.64 4.34
251 255 4.338379 ACCTCCACTGTTTTAGTCAGTC 57.662 45.455 0.00 0.00 43.14 3.51
319 323 9.774742 CTGAAAAGATAATTAGTTAAGGTGTGC 57.225 33.333 0.00 0.00 0.00 4.57
360 364 4.464597 GGGGTAATAACACAGATTTGGCAA 59.535 41.667 0.00 0.00 0.00 4.52
409 414 0.249868 TGCAAGTTGAGACGACTGGG 60.250 55.000 7.16 0.00 0.00 4.45
797 1781 3.476552 TGAAACTTCCATCCACAGACAC 58.523 45.455 0.00 0.00 0.00 3.67
798 1782 3.496692 CCTGAAACTTCCATCCACAGACA 60.497 47.826 0.00 0.00 0.00 3.41
799 1783 3.077359 CCTGAAACTTCCATCCACAGAC 58.923 50.000 0.00 0.00 0.00 3.51
800 1784 2.040278 CCCTGAAACTTCCATCCACAGA 59.960 50.000 0.00 0.00 0.00 3.41
801 1785 2.040278 TCCCTGAAACTTCCATCCACAG 59.960 50.000 0.00 0.00 0.00 3.66
802 1786 2.061848 TCCCTGAAACTTCCATCCACA 58.938 47.619 0.00 0.00 0.00 4.17
803 1787 2.224769 TGTCCCTGAAACTTCCATCCAC 60.225 50.000 0.00 0.00 0.00 4.02
947 1939 5.707931 AGGTAGAACTTAACAAGCTCGTAC 58.292 41.667 0.00 0.00 0.00 3.67
992 1987 1.611673 CCTGCGGTTCCATTTCTCTGT 60.612 52.381 0.00 0.00 0.00 3.41
1005 2000 0.036875 CTTTCCTTCCTTCCTGCGGT 59.963 55.000 0.00 0.00 0.00 5.68
1026 2021 3.133721 GTGAGGACAGCAGAGATGGTATT 59.866 47.826 0.00 0.00 0.00 1.89
1047 2042 4.101448 GCGATGCACTCCCCCTGT 62.101 66.667 0.00 0.00 0.00 4.00
1143 2138 5.714333 TGGAAGGCATAGAATAAACTTGCAA 59.286 36.000 0.00 0.00 34.22 4.08
1151 2146 5.573380 ATGAGCTGGAAGGCATAGAATAA 57.427 39.130 0.00 0.00 34.17 1.40
1152 2147 5.311265 CAATGAGCTGGAAGGCATAGAATA 58.689 41.667 0.00 0.00 34.17 1.75
1208 2203 2.877168 CACCTATGCCATCTTTCTCAGC 59.123 50.000 0.00 0.00 0.00 4.26
1255 2250 2.308866 CACAGAGGAAAGGGGTTGGTAT 59.691 50.000 0.00 0.00 0.00 2.73
1261 2256 1.068121 CCTTCACAGAGGAAAGGGGT 58.932 55.000 0.00 0.00 39.25 4.95
1804 2799 6.930068 AATAGACTGTGTTACCACTTACCT 57.070 37.500 0.00 0.00 42.34 3.08
1821 2816 7.377766 TGCATCCAGTTTAGTTCAAATAGAC 57.622 36.000 0.00 0.00 0.00 2.59
1979 2974 0.106819 GATCCTGCAGAGGCCAACAT 60.107 55.000 17.39 0.00 39.57 2.71
3176 4187 1.035932 CCCTGGCAAGATCCTTGCTG 61.036 60.000 24.96 18.76 44.36 4.41
3177 4188 1.305623 CCCTGGCAAGATCCTTGCT 59.694 57.895 24.96 0.00 44.36 3.91
3264 4276 3.007635 GGAGGTGAACCGAGGTAAAATG 58.992 50.000 0.00 0.00 42.08 2.32
3265 4277 2.026542 GGGAGGTGAACCGAGGTAAAAT 60.027 50.000 0.00 0.00 42.08 1.82
3385 4397 9.672086 GCTGGTTCAACGCATATTAATTTTATA 57.328 29.630 0.00 0.00 0.00 0.98
3503 4524 1.596496 AGCCAAGGTAGCCAGGTTAT 58.404 50.000 2.66 0.00 0.00 1.89
3530 4555 7.709601 TCATAGGCAGGGAAGATCTTACTATA 58.290 38.462 17.32 8.57 0.00 1.31
3531 4556 6.565974 TCATAGGCAGGGAAGATCTTACTAT 58.434 40.000 17.32 10.69 0.00 2.12
3532 4557 5.965486 TCATAGGCAGGGAAGATCTTACTA 58.035 41.667 17.32 9.10 0.00 1.82
3829 4856 6.593382 CCTAATCAGAGGACTGCATAATAAGC 59.407 42.308 0.00 0.00 43.17 3.09
3852 4880 2.772515 GCAACCTATGAGGAAGTACCCT 59.227 50.000 0.00 0.00 37.67 4.34
4008 5036 2.200067 CTAAGCTGTCATTGCCTCGAG 58.800 52.381 5.13 5.13 0.00 4.04
4100 5128 9.817809 CATATGGTTTGTACTTATGACACTAGT 57.182 33.333 0.00 0.00 0.00 2.57
4154 5182 4.962995 TCCTCAAACCAAACACCCAATAAA 59.037 37.500 0.00 0.00 0.00 1.40
4155 5183 4.547671 TCCTCAAACCAAACACCCAATAA 58.452 39.130 0.00 0.00 0.00 1.40
4158 5186 2.534042 TCCTCAAACCAAACACCCAA 57.466 45.000 0.00 0.00 0.00 4.12
4160 5188 2.962421 TGATTCCTCAAACCAAACACCC 59.038 45.455 0.00 0.00 0.00 4.61
4161 5189 3.243737 GGTGATTCCTCAAACCAAACACC 60.244 47.826 0.00 0.00 38.40 4.16
4163 5191 3.909732 AGGTGATTCCTCAAACCAAACA 58.090 40.909 0.00 0.00 44.42 2.83
4210 5238 3.118223 GGCTAGTACAAAATGAGGGCTCT 60.118 47.826 0.00 0.00 0.00 4.09
4316 5344 9.715121 TTAGTAATTAATACCGAATGGACCATC 57.285 33.333 7.63 0.74 39.21 3.51
4493 5522 7.070322 GGAACTATGTAACCATGTTAGGTCCTA 59.930 40.741 5.32 0.00 42.25 2.94
4495 5524 6.053650 GGAACTATGTAACCATGTTAGGTCC 58.946 44.000 0.00 0.00 42.25 4.46
4502 5531 5.944007 GGAAGTTGGAACTATGTAACCATGT 59.056 40.000 0.00 0.00 38.57 3.21
4581 5610 4.871822 ACTTAGGGCCTAATTGCAGATTT 58.128 39.130 25.57 0.00 0.00 2.17
4582 5611 4.526438 ACTTAGGGCCTAATTGCAGATT 57.474 40.909 25.57 0.00 0.00 2.40
4583 5612 5.515534 CCATACTTAGGGCCTAATTGCAGAT 60.516 44.000 25.57 8.41 0.00 2.90
4653 5689 1.772453 TCTGTTTCCCGAAAAGGAGGT 59.228 47.619 0.00 0.00 45.00 3.85
4742 5778 6.042897 AGAGGGAGTAATTATTAAGGGTTCGG 59.957 42.308 0.00 0.00 0.00 4.30
4784 5820 5.780984 AGTTTAGTACTCCCTCTGAAAACG 58.219 41.667 0.00 0.00 32.35 3.60
4844 5880 6.465084 ACTAGGTGGAAGAAACTGTGTAATC 58.535 40.000 0.00 0.00 0.00 1.75
4914 5950 4.238761 TCTTTCATGGATATCCGTCGAC 57.761 45.455 13.91 5.18 39.43 4.20
4939 5975 5.834742 TGACATTAGCAATAATGATGCCCTT 59.165 36.000 13.43 0.00 44.91 3.95
4940 5976 5.387788 TGACATTAGCAATAATGATGCCCT 58.612 37.500 13.43 0.00 44.91 5.19
4962 5998 5.668471 TGATGGAGTTGCTCTTAGAGAATG 58.332 41.667 14.14 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.