Multiple sequence alignment - TraesCS6D01G173300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G173300 chr6D 100.000 5065 0 0 1 5065 161360060 161354996 0.000000e+00 9354.0
1 TraesCS6D01G173300 chr6D 88.372 86 10 0 60 145 365342103 365342188 2.490000e-18 104.0
2 TraesCS6D01G173300 chr6A 95.296 2955 67 18 538 3450 220742322 220739398 0.000000e+00 4621.0
3 TraesCS6D01G173300 chr6A 92.193 807 40 12 3669 4454 220738282 220737478 0.000000e+00 1120.0
4 TraesCS6D01G173300 chr6A 88.971 544 55 3 4526 5065 220717708 220717166 0.000000e+00 667.0
5 TraesCS6D01G173300 chr6A 90.672 268 17 3 1 261 220743535 220743269 2.900000e-92 350.0
6 TraesCS6D01G173300 chr6A 94.253 87 3 2 3439 3525 220738359 220738275 1.140000e-26 132.0
7 TraesCS6D01G173300 chr6A 88.000 100 10 2 422 520 213840391 213840489 3.200000e-22 117.0
8 TraesCS6D01G173300 chr6B 96.317 1928 41 11 555 2470 291068086 291066177 0.000000e+00 3140.0
9 TraesCS6D01G173300 chr6B 90.534 1067 61 14 2470 3525 291066098 291065061 0.000000e+00 1375.0
10 TraesCS6D01G173300 chr6B 92.673 737 37 11 3691 4417 291065067 291064338 0.000000e+00 1046.0
11 TraesCS6D01G173300 chr6B 88.396 586 55 7 4482 5065 291064343 291063769 0.000000e+00 693.0
12 TraesCS6D01G173300 chr6B 91.156 147 11 2 3526 3670 388728696 388728842 1.110000e-46 198.0
13 TraesCS6D01G173300 chr6B 84.713 157 16 5 381 531 699020200 699020046 3.160000e-32 150.0
14 TraesCS6D01G173300 chr6B 85.714 140 13 6 1 133 291068222 291068083 1.900000e-29 141.0
15 TraesCS6D01G173300 chr4D 91.724 145 10 2 3523 3665 322075002 322074858 3.090000e-47 200.0
16 TraesCS6D01G173300 chr3A 90.066 151 14 1 3524 3673 703617037 703617187 1.440000e-45 195.0
17 TraesCS6D01G173300 chr2B 90.066 151 13 2 3524 3672 168551042 168550892 1.440000e-45 195.0
18 TraesCS6D01G173300 chr7D 89.172 157 13 4 3526 3679 377611696 377611851 5.180000e-45 193.0
19 TraesCS6D01G173300 chr7D 89.474 152 15 1 3526 3676 34983123 34982972 1.860000e-44 191.0
20 TraesCS6D01G173300 chr3B 87.425 167 15 5 3518 3678 497763615 497763781 2.410000e-43 187.0
21 TraesCS6D01G173300 chr1B 87.273 165 16 4 3514 3677 449897120 449897280 3.110000e-42 183.0
22 TraesCS6D01G173300 chr2A 86.826 167 17 3 3525 3690 511878481 511878643 1.120000e-41 182.0
23 TraesCS6D01G173300 chr3D 86.928 153 17 2 381 533 488389302 488389153 8.720000e-38 169.0
24 TraesCS6D01G173300 chr3D 90.698 86 8 0 60 145 55726605 55726690 1.150000e-21 115.0
25 TraesCS6D01G173300 chr5A 89.773 88 7 1 60 145 135305676 135305589 1.490000e-20 111.0
26 TraesCS6D01G173300 chr7B 95.455 44 2 0 4468 4511 99893379 99893422 2.530000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G173300 chr6D 161354996 161360060 5064 True 9354.00 9354 100.0000 1 5065 1 chr6D.!!$R1 5064
1 TraesCS6D01G173300 chr6A 220737478 220743535 6057 True 1555.75 4621 93.1035 1 4454 4 chr6A.!!$R2 4453
2 TraesCS6D01G173300 chr6A 220717166 220717708 542 True 667.00 667 88.9710 4526 5065 1 chr6A.!!$R1 539
3 TraesCS6D01G173300 chr6B 291063769 291068222 4453 True 1279.00 3140 90.7268 1 5065 5 chr6B.!!$R2 5064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 1661 0.035317 ACTCACGTCCACACATGCAT 59.965 50.0 0.00 0.00 0.00 3.96 F
832 1662 0.445043 CTCACGTCCACACATGCATG 59.555 55.0 25.09 25.09 0.00 4.06 F
1762 2602 0.257616 CGTCCTCCTCCTCCTCTCTT 59.742 60.0 0.00 0.00 0.00 2.85 F
2596 3515 0.320421 CTCGAAGCCAGGAACCGAAA 60.320 55.0 0.00 0.00 0.00 3.46 F
3585 5592 0.409484 CTTCCCACCCATCCAGGTTT 59.591 55.0 0.00 0.00 38.39 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 2499 0.959553 GAATATCTGACCGAGGCCGA 59.040 55.000 0.00 0.0 38.22 5.54 R
2735 3663 1.134281 GGAGAACGACGAGGACGAC 59.866 63.158 0.00 0.0 42.66 4.34 R
3566 5573 0.409484 AAACCTGGATGGGTGGGAAG 59.591 55.000 0.00 0.0 39.85 3.46 R
3912 5922 0.710567 CTCAGACGTCGTTCATGCAC 59.289 55.000 10.46 0.0 0.00 4.57 R
4891 6921 0.263172 GGAGAGAGGGATCAGGGACA 59.737 60.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 82 2.933617 ATGCAGGGTCAATGGGGCA 61.934 57.895 0.00 0.00 35.54 5.36
194 202 1.000394 GGCAACCCAAAACGCTTATGT 60.000 47.619 0.00 0.00 0.00 2.29
198 206 2.802719 ACCCAAAACGCTTATGTCCAT 58.197 42.857 0.00 0.00 0.00 3.41
232 240 2.583593 CGCCGTGCTAGAAGGCTC 60.584 66.667 17.46 0.00 46.43 4.70
239 247 2.818132 CTAGAAGGCTCCCCGCAG 59.182 66.667 0.00 0.00 41.67 5.18
250 258 0.601841 TCCCCGCAGAACGTTTCTTC 60.602 55.000 0.46 0.00 41.42 2.87
261 269 8.776802 CGCAGAACGTTTCTTCTATTAATTTTC 58.223 33.333 0.46 0.00 38.11 2.29
262 270 9.827411 GCAGAACGTTTCTTCTATTAATTTTCT 57.173 29.630 0.46 0.00 38.11 2.52
328 336 5.393896 CCATCTTTTTGAGAGAGATTTGGGC 60.394 44.000 0.00 0.00 37.93 5.36
334 342 0.107459 AGAGAGATTTGGGCTTCCGC 60.107 55.000 0.00 0.00 0.00 5.54
348 356 1.999735 CTTCCGCTGAAAATGCTACGA 59.000 47.619 0.00 0.00 0.00 3.43
354 362 2.159531 GCTGAAAATGCTACGACATGCA 60.160 45.455 0.00 0.00 43.67 3.96
358 366 4.633565 TGAAAATGCTACGACATGCACATA 59.366 37.500 0.00 0.00 42.26 2.29
359 367 5.123027 TGAAAATGCTACGACATGCACATAA 59.877 36.000 0.00 0.00 42.26 1.90
361 369 3.245518 TGCTACGACATGCACATAAGT 57.754 42.857 0.00 0.00 33.94 2.24
362 370 4.379339 TGCTACGACATGCACATAAGTA 57.621 40.909 0.00 0.00 33.94 2.24
363 371 4.109766 TGCTACGACATGCACATAAGTAC 58.890 43.478 0.00 0.00 33.94 2.73
365 373 4.026804 GCTACGACATGCACATAAGTACAC 60.027 45.833 0.00 0.00 0.00 2.90
366 374 3.259064 ACGACATGCACATAAGTACACC 58.741 45.455 0.00 0.00 0.00 4.16
368 376 3.932710 CGACATGCACATAAGTACACCTT 59.067 43.478 0.00 0.00 37.17 3.50
369 377 4.032900 CGACATGCACATAAGTACACCTTC 59.967 45.833 0.00 0.00 34.46 3.46
370 378 4.905429 ACATGCACATAAGTACACCTTCA 58.095 39.130 0.00 0.00 34.46 3.02
371 379 5.500234 ACATGCACATAAGTACACCTTCAT 58.500 37.500 0.00 0.00 34.46 2.57
373 381 7.282585 ACATGCACATAAGTACACCTTCATAT 58.717 34.615 0.00 0.00 34.46 1.78
375 383 6.649155 TGCACATAAGTACACCTTCATATGT 58.351 36.000 1.90 0.00 32.54 2.29
376 384 7.787028 TGCACATAAGTACACCTTCATATGTA 58.213 34.615 1.90 0.00 31.25 2.29
385 1215 4.019321 ACACCTTCATATGTACAGCCTTGT 60.019 41.667 0.33 0.00 41.39 3.16
400 1230 2.997485 CTTGTAAAGGCTGAGCAACC 57.003 50.000 6.82 0.00 41.27 3.77
401 1231 2.508526 CTTGTAAAGGCTGAGCAACCT 58.491 47.619 6.82 0.00 41.27 3.50
405 1235 0.540597 AAAGGCTGAGCAACCTTCCC 60.541 55.000 6.82 0.00 45.62 3.97
406 1236 1.430369 AAGGCTGAGCAACCTTCCCT 61.430 55.000 6.82 0.00 42.77 4.20
407 1237 0.547712 AGGCTGAGCAACCTTCCCTA 60.548 55.000 6.82 0.00 29.74 3.53
408 1238 0.393132 GGCTGAGCAACCTTCCCTAC 60.393 60.000 6.82 0.00 0.00 3.18
409 1239 0.615850 GCTGAGCAACCTTCCCTACT 59.384 55.000 0.00 0.00 0.00 2.57
410 1240 1.406205 GCTGAGCAACCTTCCCTACTC 60.406 57.143 0.00 0.00 0.00 2.59
412 1242 2.303022 CTGAGCAACCTTCCCTACTCAA 59.697 50.000 0.00 0.00 34.05 3.02
413 1243 2.038557 TGAGCAACCTTCCCTACTCAAC 59.961 50.000 0.00 0.00 31.60 3.18
415 1245 2.711547 AGCAACCTTCCCTACTCAACTT 59.288 45.455 0.00 0.00 0.00 2.66
416 1246 3.908103 AGCAACCTTCCCTACTCAACTTA 59.092 43.478 0.00 0.00 0.00 2.24
417 1247 4.020128 AGCAACCTTCCCTACTCAACTTAG 60.020 45.833 0.00 0.00 0.00 2.18
418 1248 4.254492 CAACCTTCCCTACTCAACTTAGC 58.746 47.826 0.00 0.00 0.00 3.09
419 1249 2.496470 ACCTTCCCTACTCAACTTAGCG 59.504 50.000 0.00 0.00 0.00 4.26
420 1250 2.496470 CCTTCCCTACTCAACTTAGCGT 59.504 50.000 0.00 0.00 0.00 5.07
421 1251 3.429135 CCTTCCCTACTCAACTTAGCGTC 60.429 52.174 0.00 0.00 0.00 5.19
422 1252 3.083122 TCCCTACTCAACTTAGCGTCT 57.917 47.619 0.00 0.00 0.00 4.18
423 1253 3.428532 TCCCTACTCAACTTAGCGTCTT 58.571 45.455 0.00 0.00 0.00 3.01
424 1254 3.442977 TCCCTACTCAACTTAGCGTCTTC 59.557 47.826 0.00 0.00 0.00 2.87
425 1255 3.427243 CCTACTCAACTTAGCGTCTTCG 58.573 50.000 0.00 0.00 40.37 3.79
426 1256 3.126514 CCTACTCAACTTAGCGTCTTCGA 59.873 47.826 0.00 0.00 39.71 3.71
427 1257 3.204597 ACTCAACTTAGCGTCTTCGAG 57.795 47.619 0.00 0.00 39.71 4.04
428 1258 2.095161 ACTCAACTTAGCGTCTTCGAGG 60.095 50.000 0.00 0.00 39.71 4.63
429 1259 1.884579 TCAACTTAGCGTCTTCGAGGT 59.115 47.619 0.00 0.00 39.71 3.85
430 1260 2.295349 TCAACTTAGCGTCTTCGAGGTT 59.705 45.455 0.00 0.00 39.71 3.50
431 1261 2.349297 ACTTAGCGTCTTCGAGGTTG 57.651 50.000 0.00 0.00 39.71 3.77
432 1262 0.992802 CTTAGCGTCTTCGAGGTTGC 59.007 55.000 5.82 5.82 39.71 4.17
433 1263 0.389426 TTAGCGTCTTCGAGGTTGCC 60.389 55.000 9.38 0.00 39.71 4.52
434 1264 1.529152 TAGCGTCTTCGAGGTTGCCA 61.529 55.000 9.38 0.00 39.71 4.92
435 1265 1.741770 GCGTCTTCGAGGTTGCCAT 60.742 57.895 0.00 0.00 39.71 4.40
436 1266 1.298859 GCGTCTTCGAGGTTGCCATT 61.299 55.000 0.00 0.00 39.71 3.16
437 1267 0.721718 CGTCTTCGAGGTTGCCATTC 59.278 55.000 0.00 0.00 39.71 2.67
438 1268 0.721718 GTCTTCGAGGTTGCCATTCG 59.278 55.000 0.00 0.00 35.76 3.34
439 1269 0.320374 TCTTCGAGGTTGCCATTCGT 59.680 50.000 0.00 0.00 35.90 3.85
440 1270 0.443869 CTTCGAGGTTGCCATTCGTG 59.556 55.000 0.00 0.00 35.90 4.35
441 1271 0.250124 TTCGAGGTTGCCATTCGTGT 60.250 50.000 0.00 0.00 35.90 4.49
442 1272 0.948623 TCGAGGTTGCCATTCGTGTG 60.949 55.000 0.00 0.00 35.90 3.82
443 1273 1.227999 CGAGGTTGCCATTCGTGTGT 61.228 55.000 0.00 0.00 0.00 3.72
444 1274 1.803334 GAGGTTGCCATTCGTGTGTA 58.197 50.000 0.00 0.00 0.00 2.90
445 1275 1.463444 GAGGTTGCCATTCGTGTGTAC 59.537 52.381 0.00 0.00 0.00 2.90
446 1276 1.202710 AGGTTGCCATTCGTGTGTACA 60.203 47.619 0.00 0.00 0.00 2.90
447 1277 1.196808 GGTTGCCATTCGTGTGTACAG 59.803 52.381 0.00 0.00 0.00 2.74
448 1278 0.871722 TTGCCATTCGTGTGTACAGC 59.128 50.000 0.00 0.00 0.00 4.40
449 1279 0.250081 TGCCATTCGTGTGTACAGCA 60.250 50.000 0.00 0.00 0.00 4.41
450 1280 1.086696 GCCATTCGTGTGTACAGCAT 58.913 50.000 0.00 0.00 0.00 3.79
451 1281 1.062587 GCCATTCGTGTGTACAGCATC 59.937 52.381 0.00 0.00 0.00 3.91
452 1282 2.345876 CCATTCGTGTGTACAGCATCA 58.654 47.619 0.00 0.00 0.00 3.07
453 1283 2.741517 CCATTCGTGTGTACAGCATCAA 59.258 45.455 0.00 0.00 0.00 2.57
454 1284 3.188254 CCATTCGTGTGTACAGCATCAAA 59.812 43.478 0.00 0.00 0.00 2.69
455 1285 4.397382 CATTCGTGTGTACAGCATCAAAG 58.603 43.478 0.00 0.00 0.00 2.77
456 1286 2.412870 TCGTGTGTACAGCATCAAAGG 58.587 47.619 0.00 0.00 0.00 3.11
457 1287 2.143122 CGTGTGTACAGCATCAAAGGT 58.857 47.619 0.00 0.00 0.00 3.50
458 1288 2.157668 CGTGTGTACAGCATCAAAGGTC 59.842 50.000 0.00 0.00 0.00 3.85
459 1289 2.157668 GTGTGTACAGCATCAAAGGTCG 59.842 50.000 0.00 0.00 0.00 4.79
460 1290 1.128692 GTGTACAGCATCAAAGGTCGC 59.871 52.381 0.00 0.00 0.00 5.19
461 1291 1.001974 TGTACAGCATCAAAGGTCGCT 59.998 47.619 0.00 0.00 34.29 4.93
463 1293 1.136147 CAGCATCAAAGGTCGCTGC 59.864 57.895 0.00 0.00 44.69 5.25
464 1294 2.042831 AGCATCAAAGGTCGCTGCC 61.043 57.895 0.00 0.00 33.34 4.85
465 1295 3.056313 GCATCAAAGGTCGCTGCCC 62.056 63.158 0.00 0.00 0.00 5.36
466 1296 2.044946 ATCAAAGGTCGCTGCCCC 60.045 61.111 0.00 0.00 0.00 5.80
467 1297 2.606587 ATCAAAGGTCGCTGCCCCT 61.607 57.895 0.00 0.00 0.00 4.79
468 1298 2.826777 ATCAAAGGTCGCTGCCCCTG 62.827 60.000 6.31 0.00 0.00 4.45
469 1299 3.570212 AAAGGTCGCTGCCCCTGT 61.570 61.111 6.31 0.00 0.00 4.00
470 1300 2.221299 AAAGGTCGCTGCCCCTGTA 61.221 57.895 6.31 0.00 0.00 2.74
471 1301 1.774894 AAAGGTCGCTGCCCCTGTAA 61.775 55.000 6.31 0.00 0.00 2.41
472 1302 2.436115 GGTCGCTGCCCCTGTAAC 60.436 66.667 0.00 0.00 0.00 2.50
473 1303 2.663196 GTCGCTGCCCCTGTAACT 59.337 61.111 0.00 0.00 0.00 2.24
474 1304 1.003718 GTCGCTGCCCCTGTAACTT 60.004 57.895 0.00 0.00 0.00 2.66
475 1305 1.019805 GTCGCTGCCCCTGTAACTTC 61.020 60.000 0.00 0.00 0.00 3.01
476 1306 1.192146 TCGCTGCCCCTGTAACTTCT 61.192 55.000 0.00 0.00 0.00 2.85
477 1307 0.741221 CGCTGCCCCTGTAACTTCTC 60.741 60.000 0.00 0.00 0.00 2.87
478 1308 0.324943 GCTGCCCCTGTAACTTCTCA 59.675 55.000 0.00 0.00 0.00 3.27
479 1309 1.946283 GCTGCCCCTGTAACTTCTCAC 60.946 57.143 0.00 0.00 0.00 3.51
480 1310 0.690762 TGCCCCTGTAACTTCTCACC 59.309 55.000 0.00 0.00 0.00 4.02
481 1311 0.035343 GCCCCTGTAACTTCTCACCC 60.035 60.000 0.00 0.00 0.00 4.61
482 1312 1.657804 CCCCTGTAACTTCTCACCCT 58.342 55.000 0.00 0.00 0.00 4.34
483 1313 2.829023 CCCCTGTAACTTCTCACCCTA 58.171 52.381 0.00 0.00 0.00 3.53
484 1314 3.178865 CCCCTGTAACTTCTCACCCTAA 58.821 50.000 0.00 0.00 0.00 2.69
485 1315 3.780850 CCCCTGTAACTTCTCACCCTAAT 59.219 47.826 0.00 0.00 0.00 1.73
486 1316 4.141688 CCCCTGTAACTTCTCACCCTAATC 60.142 50.000 0.00 0.00 0.00 1.75
487 1317 4.717280 CCCTGTAACTTCTCACCCTAATCT 59.283 45.833 0.00 0.00 0.00 2.40
488 1318 5.897824 CCCTGTAACTTCTCACCCTAATCTA 59.102 44.000 0.00 0.00 0.00 1.98
489 1319 6.555360 CCCTGTAACTTCTCACCCTAATCTAT 59.445 42.308 0.00 0.00 0.00 1.98
490 1320 7.256012 CCCTGTAACTTCTCACCCTAATCTATC 60.256 44.444 0.00 0.00 0.00 2.08
491 1321 7.287927 CCTGTAACTTCTCACCCTAATCTATCA 59.712 40.741 0.00 0.00 0.00 2.15
492 1322 8.603898 TGTAACTTCTCACCCTAATCTATCAA 57.396 34.615 0.00 0.00 0.00 2.57
493 1323 9.213777 TGTAACTTCTCACCCTAATCTATCAAT 57.786 33.333 0.00 0.00 0.00 2.57
494 1324 9.482627 GTAACTTCTCACCCTAATCTATCAATG 57.517 37.037 0.00 0.00 0.00 2.82
495 1325 7.072263 ACTTCTCACCCTAATCTATCAATGG 57.928 40.000 0.00 0.00 0.00 3.16
496 1326 6.846505 ACTTCTCACCCTAATCTATCAATGGA 59.153 38.462 0.00 0.00 0.00 3.41
497 1327 7.348274 ACTTCTCACCCTAATCTATCAATGGAA 59.652 37.037 0.00 0.00 0.00 3.53
498 1328 7.878621 TCTCACCCTAATCTATCAATGGAAT 57.121 36.000 0.00 0.00 0.00 3.01
499 1329 7.683578 TCTCACCCTAATCTATCAATGGAATG 58.316 38.462 0.00 0.00 0.00 2.67
500 1330 7.513781 TCTCACCCTAATCTATCAATGGAATGA 59.486 37.037 0.00 0.00 0.00 2.57
501 1331 8.223378 TCACCCTAATCTATCAATGGAATGAT 57.777 34.615 0.00 0.00 42.52 2.45
502 1332 9.337714 TCACCCTAATCTATCAATGGAATGATA 57.662 33.333 0.00 0.00 40.44 2.15
503 1333 9.388506 CACCCTAATCTATCAATGGAATGATAC 57.611 37.037 0.00 0.00 40.44 2.24
504 1334 8.260818 ACCCTAATCTATCAATGGAATGATACG 58.739 37.037 0.00 0.00 40.44 3.06
505 1335 7.225538 CCCTAATCTATCAATGGAATGATACGC 59.774 40.741 0.00 0.00 40.44 4.42
506 1336 7.984050 CCTAATCTATCAATGGAATGATACGCT 59.016 37.037 0.00 0.00 40.44 5.07
508 1338 8.709386 AATCTATCAATGGAATGATACGCTAC 57.291 34.615 0.00 0.00 40.44 3.58
509 1339 6.631016 TCTATCAATGGAATGATACGCTACC 58.369 40.000 0.00 0.00 40.44 3.18
510 1340 4.955811 TCAATGGAATGATACGCTACCT 57.044 40.909 0.00 0.00 0.00 3.08
511 1341 5.290493 TCAATGGAATGATACGCTACCTT 57.710 39.130 0.00 0.00 0.00 3.50
512 1342 6.413783 TCAATGGAATGATACGCTACCTTA 57.586 37.500 0.00 0.00 0.00 2.69
513 1343 6.455647 TCAATGGAATGATACGCTACCTTAG 58.544 40.000 0.00 0.00 0.00 2.18
514 1344 8.272584 ATCAATGGAATGATACGCTACCTTAGC 61.273 40.741 0.00 0.00 41.92 3.09
525 1355 3.391049 GCTACCTTAGCGTATTTGAGGG 58.609 50.000 0.00 0.00 42.62 4.30
526 1356 3.069158 GCTACCTTAGCGTATTTGAGGGA 59.931 47.826 0.00 0.00 42.62 4.20
527 1357 4.442472 GCTACCTTAGCGTATTTGAGGGAA 60.442 45.833 0.00 0.00 42.62 3.97
528 1358 4.563140 ACCTTAGCGTATTTGAGGGAAA 57.437 40.909 0.00 0.00 0.00 3.13
529 1359 4.913784 ACCTTAGCGTATTTGAGGGAAAA 58.086 39.130 0.00 0.00 0.00 2.29
530 1360 5.318630 ACCTTAGCGTATTTGAGGGAAAAA 58.681 37.500 0.00 0.00 0.00 1.94
622 1452 2.204291 ATCCAGCAACCCCCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
831 1661 0.035317 ACTCACGTCCACACATGCAT 59.965 50.000 0.00 0.00 0.00 3.96
832 1662 0.445043 CTCACGTCCACACATGCATG 59.555 55.000 25.09 25.09 0.00 4.06
833 1663 1.154169 CACGTCCACACATGCATGC 60.154 57.895 26.53 11.82 0.00 4.06
834 1664 1.600356 ACGTCCACACATGCATGCA 60.600 52.632 26.53 25.04 0.00 3.96
895 1726 9.875691 CCATCGTATATATAATACCCATGGATG 57.124 37.037 15.22 0.00 35.49 3.51
1014 1845 2.806745 CGGGAATATGATGGACACGCTT 60.807 50.000 0.00 0.00 0.00 4.68
1189 2021 5.972935 TGTGCTCCTCGATTTCAATTAGTA 58.027 37.500 0.00 0.00 0.00 1.82
1190 2022 6.042777 TGTGCTCCTCGATTTCAATTAGTAG 58.957 40.000 0.00 0.00 0.00 2.57
1191 2023 6.043411 GTGCTCCTCGATTTCAATTAGTAGT 58.957 40.000 0.00 0.00 0.00 2.73
1564 2404 3.506059 AACGACGCTGAGCAGTGCT 62.506 57.895 19.86 19.86 43.88 4.40
1762 2602 0.257616 CGTCCTCCTCCTCCTCTCTT 59.742 60.000 0.00 0.00 0.00 2.85
2020 2860 2.203422 ATCTCCGCCTCCTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
2206 3046 3.837146 TCAAGATGGGCATCTCTATCCTC 59.163 47.826 0.00 0.00 46.75 3.71
2579 3498 0.753262 TAGCCCAGATTTCCGAGCTC 59.247 55.000 2.73 2.73 0.00 4.09
2596 3515 0.320421 CTCGAAGCCAGGAACCGAAA 60.320 55.000 0.00 0.00 0.00 3.46
2753 3681 1.134281 GTCGTCCTCGTCGTTCTCC 59.866 63.158 0.00 0.00 38.33 3.71
2936 3864 0.528017 CTCAGGCGAGCTTGACACTA 59.472 55.000 10.19 0.00 31.00 2.74
2937 3865 0.966179 TCAGGCGAGCTTGACACTAA 59.034 50.000 10.19 0.00 0.00 2.24
2939 3867 1.067565 CAGGCGAGCTTGACACTAAGA 60.068 52.381 10.19 0.00 0.00 2.10
2984 3912 8.077623 GTACGTCACGATGATTTTTGTTTATG 57.922 34.615 2.91 0.00 0.00 1.90
2986 3914 7.136119 ACGTCACGATGATTTTTGTTTATGTT 58.864 30.769 2.91 0.00 0.00 2.71
3099 4055 1.134367 CTCCTGAGTATTTCGCCGACA 59.866 52.381 0.00 0.00 0.00 4.35
3121 4077 0.884704 GACCTGCAGGCGAAAACTCA 60.885 55.000 33.06 0.00 39.32 3.41
3146 4103 1.605753 AAAACTTGACCGCCTTCTCC 58.394 50.000 0.00 0.00 0.00 3.71
3224 4182 3.002348 CGTCCTGTTCCTTTCAGTTTCAC 59.998 47.826 0.00 0.00 0.00 3.18
3237 4195 4.965814 TCAGTTTCACAGAAGCTTCATCT 58.034 39.130 27.57 4.76 0.00 2.90
3252 4210 4.083802 GCTTCATCTGCCATTAATACGTCC 60.084 45.833 0.00 0.00 0.00 4.79
3275 4233 5.415701 CCCGAAATACATATCCCTTTCATGG 59.584 44.000 0.00 0.00 0.00 3.66
3496 5503 8.842764 AGGGATGGGATAGAAAAAGTTTTACTA 58.157 33.333 0.24 0.00 0.00 1.82
3533 5540 8.728088 GAAAATTCGAATTTGAAGCAGACTAA 57.272 30.769 31.04 0.00 38.53 2.24
3534 5541 8.733857 AAAATTCGAATTTGAAGCAGACTAAG 57.266 30.769 31.04 0.00 38.53 2.18
3535 5542 5.862924 TTCGAATTTGAAGCAGACTAAGG 57.137 39.130 3.86 0.00 0.00 2.69
3536 5543 3.684788 TCGAATTTGAAGCAGACTAAGGC 59.315 43.478 0.00 0.00 0.00 4.35
3537 5544 3.436704 CGAATTTGAAGCAGACTAAGGCA 59.563 43.478 0.00 0.00 0.00 4.75
3538 5545 4.095483 CGAATTTGAAGCAGACTAAGGCAT 59.905 41.667 0.00 0.00 0.00 4.40
3539 5546 5.294306 CGAATTTGAAGCAGACTAAGGCATA 59.706 40.000 0.00 0.00 0.00 3.14
3540 5547 6.510799 CGAATTTGAAGCAGACTAAGGCATAG 60.511 42.308 0.00 0.00 37.66 2.23
3541 5548 3.185246 TGAAGCAGACTAAGGCATAGC 57.815 47.619 0.00 0.00 34.78 2.97
3554 5561 3.492102 GGCATAGCCTAGTGATGGAAA 57.508 47.619 0.00 0.00 46.69 3.13
3555 5562 3.406764 GGCATAGCCTAGTGATGGAAAG 58.593 50.000 0.00 0.00 46.69 2.62
3556 5563 3.406764 GCATAGCCTAGTGATGGAAAGG 58.593 50.000 0.00 0.00 0.00 3.11
3557 5564 3.808618 GCATAGCCTAGTGATGGAAAGGG 60.809 52.174 0.00 0.00 0.00 3.95
3558 5565 1.216990 AGCCTAGTGATGGAAAGGGG 58.783 55.000 0.00 0.00 0.00 4.79
3559 5566 0.466372 GCCTAGTGATGGAAAGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
3560 5567 1.216990 CCTAGTGATGGAAAGGGGCT 58.783 55.000 0.00 0.00 0.00 5.19
3561 5568 1.133976 CCTAGTGATGGAAAGGGGCTG 60.134 57.143 0.00 0.00 0.00 4.85
3562 5569 0.918983 TAGTGATGGAAAGGGGCTGG 59.081 55.000 0.00 0.00 0.00 4.85
3563 5570 2.054453 GTGATGGAAAGGGGCTGGC 61.054 63.158 0.00 0.00 0.00 4.85
3564 5571 2.830370 GATGGAAAGGGGCTGGCG 60.830 66.667 0.00 0.00 0.00 5.69
3565 5572 3.645268 GATGGAAAGGGGCTGGCGT 62.645 63.158 0.00 0.00 0.00 5.68
3566 5573 3.645268 ATGGAAAGGGGCTGGCGTC 62.645 63.158 0.00 0.00 0.00 5.19
3567 5574 4.035102 GGAAAGGGGCTGGCGTCT 62.035 66.667 0.00 0.00 0.00 4.18
3568 5575 2.034221 GAAAGGGGCTGGCGTCTT 59.966 61.111 0.00 0.00 0.00 3.01
3569 5576 2.034221 AAAGGGGCTGGCGTCTTC 59.966 61.111 8.40 0.00 0.00 2.87
3570 5577 3.569200 AAAGGGGCTGGCGTCTTCC 62.569 63.158 8.40 0.00 0.00 3.46
3576 5583 3.636231 CTGGCGTCTTCCCACCCA 61.636 66.667 0.00 0.00 0.00 4.51
3577 5584 2.933287 TGGCGTCTTCCCACCCAT 60.933 61.111 0.00 0.00 0.00 4.00
3578 5585 2.124695 GGCGTCTTCCCACCCATC 60.125 66.667 0.00 0.00 0.00 3.51
3579 5586 2.124695 GCGTCTTCCCACCCATCC 60.125 66.667 0.00 0.00 0.00 3.51
3580 5587 2.966732 GCGTCTTCCCACCCATCCA 61.967 63.158 0.00 0.00 0.00 3.41
3581 5588 1.221840 CGTCTTCCCACCCATCCAG 59.778 63.158 0.00 0.00 0.00 3.86
3582 5589 1.609783 GTCTTCCCACCCATCCAGG 59.390 63.158 0.00 0.00 37.03 4.45
3583 5590 1.163309 TCTTCCCACCCATCCAGGT 59.837 57.895 0.00 0.00 42.40 4.00
3584 5591 0.477597 TCTTCCCACCCATCCAGGTT 60.478 55.000 0.00 0.00 38.39 3.50
3585 5592 0.409484 CTTCCCACCCATCCAGGTTT 59.591 55.000 0.00 0.00 38.39 3.27
3586 5593 1.638589 CTTCCCACCCATCCAGGTTTA 59.361 52.381 0.00 0.00 38.39 2.01
3587 5594 1.761711 TCCCACCCATCCAGGTTTAA 58.238 50.000 0.00 0.00 38.39 1.52
3588 5595 1.638589 TCCCACCCATCCAGGTTTAAG 59.361 52.381 0.00 0.00 38.39 1.85
3589 5596 1.638589 CCCACCCATCCAGGTTTAAGA 59.361 52.381 0.00 0.00 38.39 2.10
3590 5597 2.620627 CCCACCCATCCAGGTTTAAGAC 60.621 54.545 0.00 0.00 38.39 3.01
3591 5598 2.041081 CCACCCATCCAGGTTTAAGACA 59.959 50.000 0.00 0.00 38.39 3.41
3592 5599 3.309121 CCACCCATCCAGGTTTAAGACAT 60.309 47.826 0.00 0.00 38.39 3.06
3593 5600 3.696051 CACCCATCCAGGTTTAAGACATG 59.304 47.826 0.00 0.00 38.39 3.21
3610 5617 7.790782 AAGACATGGTATTTACAATTTGGGT 57.209 32.000 0.00 0.00 0.00 4.51
3611 5618 7.790782 AGACATGGTATTTACAATTTGGGTT 57.209 32.000 0.00 0.00 0.00 4.11
3612 5619 8.201242 AGACATGGTATTTACAATTTGGGTTT 57.799 30.769 0.00 0.00 0.00 3.27
3613 5620 8.093927 AGACATGGTATTTACAATTTGGGTTTG 58.906 33.333 0.00 0.00 0.00 2.93
3614 5621 7.740805 ACATGGTATTTACAATTTGGGTTTGT 58.259 30.769 0.00 0.00 40.30 2.83
3615 5622 8.214364 ACATGGTATTTACAATTTGGGTTTGTT 58.786 29.630 0.00 0.00 38.26 2.83
3616 5623 8.502387 CATGGTATTTACAATTTGGGTTTGTTG 58.498 33.333 0.78 0.00 38.26 3.33
3617 5624 6.483640 TGGTATTTACAATTTGGGTTTGTTGC 59.516 34.615 0.78 0.00 38.26 4.17
3618 5625 6.483640 GGTATTTACAATTTGGGTTTGTTGCA 59.516 34.615 0.78 0.00 38.26 4.08
3619 5626 5.803020 TTTACAATTTGGGTTTGTTGCAC 57.197 34.783 0.78 0.00 38.26 4.57
3620 5627 2.637947 ACAATTTGGGTTTGTTGCACC 58.362 42.857 0.78 0.00 33.64 5.01
3621 5628 2.026822 ACAATTTGGGTTTGTTGCACCA 60.027 40.909 0.78 0.00 33.64 4.17
3622 5629 3.012518 CAATTTGGGTTTGTTGCACCAA 58.987 40.909 0.00 0.00 40.94 3.67
3623 5630 3.574354 ATTTGGGTTTGTTGCACCAAT 57.426 38.095 0.00 0.00 42.09 3.16
3624 5631 3.356529 TTTGGGTTTGTTGCACCAATT 57.643 38.095 0.00 0.00 42.09 2.32
3625 5632 4.487714 TTTGGGTTTGTTGCACCAATTA 57.512 36.364 0.00 0.00 42.09 1.40
3626 5633 4.696479 TTGGGTTTGTTGCACCAATTAT 57.304 36.364 0.00 0.00 38.02 1.28
3627 5634 5.808366 TTGGGTTTGTTGCACCAATTATA 57.192 34.783 0.00 0.00 38.02 0.98
3628 5635 5.140747 TGGGTTTGTTGCACCAATTATAC 57.859 39.130 0.00 0.00 35.80 1.47
3629 5636 4.835615 TGGGTTTGTTGCACCAATTATACT 59.164 37.500 0.00 0.00 35.80 2.12
3630 5637 5.167845 GGGTTTGTTGCACCAATTATACTG 58.832 41.667 0.00 0.00 35.80 2.74
3631 5638 5.279256 GGGTTTGTTGCACCAATTATACTGT 60.279 40.000 0.00 0.00 35.80 3.55
3632 5639 6.071840 GGGTTTGTTGCACCAATTATACTGTA 60.072 38.462 0.00 0.00 35.80 2.74
3633 5640 7.027161 GGTTTGTTGCACCAATTATACTGTAG 58.973 38.462 0.00 0.00 34.04 2.74
3634 5641 6.751514 TTGTTGCACCAATTATACTGTAGG 57.248 37.500 0.00 0.00 0.00 3.18
3635 5642 5.189928 TGTTGCACCAATTATACTGTAGGG 58.810 41.667 0.00 0.00 0.00 3.53
3636 5643 5.045505 TGTTGCACCAATTATACTGTAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
3637 5644 5.904984 TGCACCAATTATACTGTAGGGAT 57.095 39.130 0.00 0.00 0.00 3.85
3638 5645 6.260700 TGCACCAATTATACTGTAGGGATT 57.739 37.500 0.00 0.00 0.00 3.01
3639 5646 6.296026 TGCACCAATTATACTGTAGGGATTC 58.704 40.000 0.00 0.00 0.00 2.52
3640 5647 5.705905 GCACCAATTATACTGTAGGGATTCC 59.294 44.000 0.00 0.00 0.00 3.01
3641 5648 6.238648 CACCAATTATACTGTAGGGATTCCC 58.761 44.000 14.42 14.42 45.90 3.97
3654 5661 4.846168 GGGATTCCCTTACAGTCTTTCT 57.154 45.455 14.98 0.00 41.34 2.52
3655 5662 4.518249 GGGATTCCCTTACAGTCTTTCTG 58.482 47.826 14.98 0.00 44.11 3.02
3657 5664 5.189145 GGGATTCCCTTACAGTCTTTCTGTA 59.811 44.000 14.98 3.96 46.77 2.74
3766 5773 2.685388 TCTTGCGTGGAACAAATTGTCA 59.315 40.909 0.00 0.00 44.16 3.58
3808 5815 5.490213 GTTCGGAATCGTGTATGATTTGTC 58.510 41.667 0.00 0.00 38.65 3.18
3814 5821 7.515215 CGGAATCGTGTATGATTTGTCTTGTAG 60.515 40.741 1.23 0.00 38.65 2.74
3873 5883 8.675705 TTCTTATTATAGCTACAAATGCAGCA 57.324 30.769 8.26 0.00 40.36 4.41
4112 6125 1.207089 CAGTTTGCGAGATAGGGACCA 59.793 52.381 0.00 0.00 0.00 4.02
4204 6229 3.307379 GTGCTCGTGGAGGACTTTT 57.693 52.632 9.64 0.00 45.37 2.27
4205 6230 1.149148 GTGCTCGTGGAGGACTTTTC 58.851 55.000 9.64 0.00 45.37 2.29
4211 6236 4.789802 GCTCGTGGAGGACTTTTCTTTTTG 60.790 45.833 0.00 0.00 0.00 2.44
4213 6238 4.703093 TCGTGGAGGACTTTTCTTTTTGTT 59.297 37.500 0.00 0.00 0.00 2.83
4226 6251 7.961325 TTTCTTTTTGTTTGAAACTTGCTCT 57.039 28.000 9.69 0.00 0.00 4.09
4356 6381 0.179127 CGCGGTCACATCATCTCACT 60.179 55.000 0.00 0.00 0.00 3.41
4385 6410 8.916628 AATCTTTGCCTCTCTCTATATTTTCC 57.083 34.615 0.00 0.00 0.00 3.13
4387 6412 7.861629 TCTTTGCCTCTCTCTATATTTTCCAA 58.138 34.615 0.00 0.00 0.00 3.53
4425 6452 7.013274 TGGCTTAAAATGTAGCATCAATAGACC 59.987 37.037 0.00 0.00 39.15 3.85
4442 6470 9.154632 TCAATAGACCTTTATATAGAGGCACAA 57.845 33.333 17.29 3.67 36.48 3.33
4455 6483 7.859325 ATAGAGGCACAAACAATATAAACGT 57.141 32.000 0.00 0.00 0.00 3.99
4456 6484 6.178239 AGAGGCACAAACAATATAAACGTC 57.822 37.500 0.00 0.00 0.00 4.34
4457 6485 5.123344 AGAGGCACAAACAATATAAACGTCC 59.877 40.000 0.00 0.00 0.00 4.79
4458 6486 4.762765 AGGCACAAACAATATAAACGTCCA 59.237 37.500 0.00 0.00 0.00 4.02
4459 6487 5.417580 AGGCACAAACAATATAAACGTCCAT 59.582 36.000 0.00 0.00 0.00 3.41
4460 6488 6.600032 AGGCACAAACAATATAAACGTCCATA 59.400 34.615 0.00 0.00 0.00 2.74
4461 6489 6.689669 GGCACAAACAATATAAACGTCCATAC 59.310 38.462 0.00 0.00 0.00 2.39
4462 6490 7.244898 GCACAAACAATATAAACGTCCATACA 58.755 34.615 0.00 0.00 0.00 2.29
4463 6491 7.217447 GCACAAACAATATAAACGTCCATACAC 59.783 37.037 0.00 0.00 0.00 2.90
4464 6492 8.231161 CACAAACAATATAAACGTCCATACACA 58.769 33.333 0.00 0.00 0.00 3.72
4465 6493 8.784994 ACAAACAATATAAACGTCCATACACAA 58.215 29.630 0.00 0.00 0.00 3.33
4466 6494 9.613957 CAAACAATATAAACGTCCATACACAAA 57.386 29.630 0.00 0.00 0.00 2.83
4469 6497 9.615295 ACAATATAAACGTCCATACACAAAAAC 57.385 29.630 0.00 0.00 0.00 2.43
4470 6498 9.613957 CAATATAAACGTCCATACACAAAAACA 57.386 29.630 0.00 0.00 0.00 2.83
4471 6499 9.615295 AATATAAACGTCCATACACAAAAACAC 57.385 29.630 0.00 0.00 0.00 3.32
4472 6500 4.966965 AACGTCCATACACAAAAACACA 57.033 36.364 0.00 0.00 0.00 3.72
4473 6501 4.281525 ACGTCCATACACAAAAACACAC 57.718 40.909 0.00 0.00 0.00 3.82
4474 6502 3.065648 ACGTCCATACACAAAAACACACC 59.934 43.478 0.00 0.00 0.00 4.16
4475 6503 3.065510 CGTCCATACACAAAAACACACCA 59.934 43.478 0.00 0.00 0.00 4.17
4476 6504 4.606961 GTCCATACACAAAAACACACCAG 58.393 43.478 0.00 0.00 0.00 4.00
4477 6505 3.067461 TCCATACACAAAAACACACCAGC 59.933 43.478 0.00 0.00 0.00 4.85
4478 6506 3.181482 CCATACACAAAAACACACCAGCA 60.181 43.478 0.00 0.00 0.00 4.41
4479 6507 4.428209 CATACACAAAAACACACCAGCAA 58.572 39.130 0.00 0.00 0.00 3.91
4480 6508 3.393089 ACACAAAAACACACCAGCAAA 57.607 38.095 0.00 0.00 0.00 3.68
4481 6509 3.936564 ACACAAAAACACACCAGCAAAT 58.063 36.364 0.00 0.00 0.00 2.32
4482 6510 5.078411 ACACAAAAACACACCAGCAAATA 57.922 34.783 0.00 0.00 0.00 1.40
4483 6511 5.108517 ACACAAAAACACACCAGCAAATAG 58.891 37.500 0.00 0.00 0.00 1.73
4486 6514 6.754209 CACAAAAACACACCAGCAAATAGTAA 59.246 34.615 0.00 0.00 0.00 2.24
4515 6543 2.760634 TGACCAAAGCTATGCGAGAA 57.239 45.000 0.00 0.00 0.00 2.87
4552 6580 2.167487 ACCTCAAACCACGCAATGTTTT 59.833 40.909 0.00 0.00 32.60 2.43
4561 6589 2.788786 CACGCAATGTTTTGTCTTCCAC 59.211 45.455 0.00 0.00 35.17 4.02
4562 6590 2.425312 ACGCAATGTTTTGTCTTCCACA 59.575 40.909 0.00 0.00 35.17 4.17
4572 6600 6.970043 TGTTTTGTCTTCCACAGTTTATTTCG 59.030 34.615 0.00 0.00 35.97 3.46
4576 6604 3.991773 TCTTCCACAGTTTATTTCGTCCG 59.008 43.478 0.00 0.00 0.00 4.79
4590 6620 2.121786 TCGTCCGTCTTTTTCTTCGTG 58.878 47.619 0.00 0.00 0.00 4.35
4595 6625 2.599848 CCGTCTTTTTCTTCGTGCACTG 60.600 50.000 16.19 8.79 0.00 3.66
4669 6699 3.173965 CTTCCCTTGTCCCTCACTCTAA 58.826 50.000 0.00 0.00 0.00 2.10
4680 6710 5.046231 GTCCCTCACTCTAATGTCTTTTCCT 60.046 44.000 0.00 0.00 0.00 3.36
4687 6717 6.023603 ACTCTAATGTCTTTTCCTGACCCTA 58.976 40.000 0.00 0.00 33.83 3.53
4693 6723 2.494870 TCTTTTCCTGACCCTACTACGC 59.505 50.000 0.00 0.00 0.00 4.42
4698 6728 1.338337 CCTGACCCTACTACGCATCAG 59.662 57.143 0.00 0.00 34.62 2.90
4720 6750 0.552848 ATGCCCCACCGAATCTTCAT 59.447 50.000 0.00 0.00 0.00 2.57
4725 6755 1.407299 CCCACCGAATCTTCATGCTCA 60.407 52.381 0.00 0.00 0.00 4.26
4734 6764 5.419760 AATCTTCATGCTCAACATCATCG 57.580 39.130 0.00 0.00 36.64 3.84
4809 6839 4.990910 ACCAGGGCCTCACCAGCT 62.991 66.667 0.95 0.00 42.05 4.24
4811 6841 3.644606 CAGGGCCTCACCAGCTGT 61.645 66.667 13.81 0.00 42.05 4.40
4836 6866 0.321653 CCCCCAACTTCTTCTCCACG 60.322 60.000 0.00 0.00 0.00 4.94
4840 6870 1.673033 CCAACTTCTTCTCCACGCGAT 60.673 52.381 15.93 0.00 0.00 4.58
4855 6885 1.297672 CGATCACGCGATGTCGTCT 60.298 57.895 15.93 0.00 41.21 4.18
4959 6989 5.942236 ACAAGCAACACATAGAGAACATCAT 59.058 36.000 0.00 0.00 0.00 2.45
5050 7080 2.158667 AGGTTGTGACGATGTTCCCTTT 60.159 45.455 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.034767 ATGTGGTGGCTGGATCTGTG 60.035 55.000 0.00 0.00 0.00 3.66
39 40 0.034767 CATGTGGTGGCTGGATCTGT 60.035 55.000 0.00 0.00 0.00 3.41
139 147 1.066136 CAGCGTGACATCACTGACAG 58.934 55.000 10.18 0.00 44.34 3.51
194 202 0.394216 CGGTGGATTTGGCTCATGGA 60.394 55.000 0.00 0.00 0.00 3.41
198 206 2.361104 GCCGGTGGATTTGGCTCA 60.361 61.111 1.90 0.00 45.40 4.26
229 237 2.668550 AAACGTTCTGCGGGGAGC 60.669 61.111 0.00 0.00 46.52 4.70
232 240 0.602905 AGAAGAAACGTTCTGCGGGG 60.603 55.000 0.00 0.00 46.52 5.73
278 286 9.469807 GGCTCTTCATATCTATATATCAAACCG 57.530 37.037 0.00 0.00 0.00 4.44
279 287 9.771534 GGGCTCTTCATATCTATATATCAAACC 57.228 37.037 0.00 0.00 0.00 3.27
288 296 9.730705 CAAAAAGATGGGCTCTTCATATCTATA 57.269 33.333 1.86 0.00 43.60 1.31
289 297 8.443176 TCAAAAAGATGGGCTCTTCATATCTAT 58.557 33.333 1.86 0.00 43.60 1.98
290 298 7.805163 TCAAAAAGATGGGCTCTTCATATCTA 58.195 34.615 1.86 0.00 43.60 1.98
291 299 6.666678 TCAAAAAGATGGGCTCTTCATATCT 58.333 36.000 1.86 0.00 43.60 1.98
292 300 6.769822 TCTCAAAAAGATGGGCTCTTCATATC 59.230 38.462 1.86 0.00 43.60 1.63
293 301 6.666678 TCTCAAAAAGATGGGCTCTTCATAT 58.333 36.000 1.86 0.00 43.60 1.78
302 310 5.393896 CCAAATCTCTCTCAAAAAGATGGGC 60.394 44.000 0.00 0.00 32.19 5.36
303 311 5.126707 CCCAAATCTCTCTCAAAAAGATGGG 59.873 44.000 0.00 0.00 39.38 4.00
328 336 1.999735 TCGTAGCATTTTCAGCGGAAG 59.000 47.619 0.00 0.00 37.01 3.46
334 342 3.120234 TGTGCATGTCGTAGCATTTTCAG 60.120 43.478 0.00 0.00 43.44 3.02
348 356 4.905429 TGAAGGTGTACTTATGTGCATGT 58.095 39.130 2.96 0.00 40.65 3.21
354 362 7.926555 GCTGTACATATGAAGGTGTACTTATGT 59.073 37.037 10.38 0.00 46.70 2.29
358 366 5.425539 AGGCTGTACATATGAAGGTGTACTT 59.574 40.000 10.38 0.00 46.70 2.24
359 367 4.962995 AGGCTGTACATATGAAGGTGTACT 59.037 41.667 10.38 0.00 46.70 2.73
361 369 5.188948 ACAAGGCTGTACATATGAAGGTGTA 59.811 40.000 10.38 0.00 32.54 2.90
362 370 4.019321 ACAAGGCTGTACATATGAAGGTGT 60.019 41.667 10.38 0.00 32.54 4.16
363 371 4.517285 ACAAGGCTGTACATATGAAGGTG 58.483 43.478 10.38 0.00 32.54 4.00
365 373 6.260936 CCTTTACAAGGCTGTACATATGAAGG 59.739 42.308 10.38 3.31 42.78 3.46
366 374 7.251704 CCTTTACAAGGCTGTACATATGAAG 57.748 40.000 10.38 5.18 42.78 3.02
393 1223 2.303311 AGTTGAGTAGGGAAGGTTGCTC 59.697 50.000 0.00 0.00 0.00 4.26
394 1224 2.339769 AGTTGAGTAGGGAAGGTTGCT 58.660 47.619 0.00 0.00 0.00 3.91
395 1225 2.861147 AGTTGAGTAGGGAAGGTTGC 57.139 50.000 0.00 0.00 0.00 4.17
396 1226 4.254492 GCTAAGTTGAGTAGGGAAGGTTG 58.746 47.826 0.00 0.00 0.00 3.77
397 1227 3.056035 CGCTAAGTTGAGTAGGGAAGGTT 60.056 47.826 0.00 0.00 34.35 3.50
398 1228 2.496470 CGCTAAGTTGAGTAGGGAAGGT 59.504 50.000 0.00 0.00 34.35 3.50
399 1229 2.496470 ACGCTAAGTTGAGTAGGGAAGG 59.504 50.000 2.92 0.00 35.91 3.46
400 1230 3.444388 AGACGCTAAGTTGAGTAGGGAAG 59.556 47.826 2.92 0.00 35.91 3.46
401 1231 3.428532 AGACGCTAAGTTGAGTAGGGAA 58.571 45.455 2.92 0.00 35.91 3.97
402 1232 3.083122 AGACGCTAAGTTGAGTAGGGA 57.917 47.619 2.92 0.00 35.91 4.20
405 1235 4.336101 CTCGAAGACGCTAAGTTGAGTAG 58.664 47.826 0.00 0.00 39.58 2.57
406 1236 3.126514 CCTCGAAGACGCTAAGTTGAGTA 59.873 47.826 0.00 0.00 39.58 2.59
407 1237 2.095161 CCTCGAAGACGCTAAGTTGAGT 60.095 50.000 0.00 0.00 39.58 3.41
408 1238 2.095161 ACCTCGAAGACGCTAAGTTGAG 60.095 50.000 0.00 0.00 39.58 3.02
409 1239 1.884579 ACCTCGAAGACGCTAAGTTGA 59.115 47.619 0.00 0.00 39.58 3.18
410 1240 2.349297 ACCTCGAAGACGCTAAGTTG 57.651 50.000 0.00 0.00 39.58 3.16
412 1242 1.669211 GCAACCTCGAAGACGCTAAGT 60.669 52.381 0.00 0.00 39.58 2.24
413 1243 0.992802 GCAACCTCGAAGACGCTAAG 59.007 55.000 0.00 0.00 39.58 2.18
415 1245 1.214589 GGCAACCTCGAAGACGCTA 59.785 57.895 0.00 0.00 39.58 4.26
416 1246 2.048127 GGCAACCTCGAAGACGCT 60.048 61.111 0.00 0.00 39.58 5.07
417 1247 1.298859 AATGGCAACCTCGAAGACGC 61.299 55.000 0.00 0.00 39.58 5.19
418 1248 0.721718 GAATGGCAACCTCGAAGACG 59.278 55.000 0.00 0.00 41.26 4.18
419 1249 0.721718 CGAATGGCAACCTCGAAGAC 59.278 55.000 10.42 0.00 41.90 3.01
420 1250 0.320374 ACGAATGGCAACCTCGAAGA 59.680 50.000 19.59 0.00 41.90 2.87
421 1251 0.443869 CACGAATGGCAACCTCGAAG 59.556 55.000 19.59 10.29 41.90 3.79
422 1252 0.250124 ACACGAATGGCAACCTCGAA 60.250 50.000 19.59 0.00 41.90 3.71
423 1253 0.948623 CACACGAATGGCAACCTCGA 60.949 55.000 19.59 0.00 41.90 4.04
424 1254 1.227999 ACACACGAATGGCAACCTCG 61.228 55.000 13.38 13.38 44.11 4.63
425 1255 1.463444 GTACACACGAATGGCAACCTC 59.537 52.381 0.00 0.00 0.00 3.85
426 1256 1.202710 TGTACACACGAATGGCAACCT 60.203 47.619 0.00 0.00 0.00 3.50
427 1257 1.196808 CTGTACACACGAATGGCAACC 59.803 52.381 0.00 0.00 0.00 3.77
428 1258 1.399727 GCTGTACACACGAATGGCAAC 60.400 52.381 0.00 0.00 0.00 4.17
429 1259 0.871722 GCTGTACACACGAATGGCAA 59.128 50.000 0.00 0.00 0.00 4.52
430 1260 0.250081 TGCTGTACACACGAATGGCA 60.250 50.000 0.00 0.00 0.00 4.92
431 1261 1.062587 GATGCTGTACACACGAATGGC 59.937 52.381 0.00 0.00 0.00 4.40
432 1262 2.345876 TGATGCTGTACACACGAATGG 58.654 47.619 0.00 0.00 0.00 3.16
433 1263 4.397382 CTTTGATGCTGTACACACGAATG 58.603 43.478 0.00 0.00 0.00 2.67
434 1264 3.436704 CCTTTGATGCTGTACACACGAAT 59.563 43.478 0.00 0.00 0.00 3.34
435 1265 2.805671 CCTTTGATGCTGTACACACGAA 59.194 45.455 0.00 0.00 0.00 3.85
436 1266 2.224185 ACCTTTGATGCTGTACACACGA 60.224 45.455 0.00 0.00 0.00 4.35
437 1267 2.143122 ACCTTTGATGCTGTACACACG 58.857 47.619 0.00 0.00 0.00 4.49
438 1268 2.157668 CGACCTTTGATGCTGTACACAC 59.842 50.000 0.00 0.00 0.00 3.82
439 1269 2.412870 CGACCTTTGATGCTGTACACA 58.587 47.619 0.00 0.00 0.00 3.72
440 1270 1.128692 GCGACCTTTGATGCTGTACAC 59.871 52.381 0.00 0.00 0.00 2.90
441 1271 1.001974 AGCGACCTTTGATGCTGTACA 59.998 47.619 0.00 0.00 36.09 2.90
442 1272 1.726853 AGCGACCTTTGATGCTGTAC 58.273 50.000 0.00 0.00 36.09 2.90
446 1276 2.042831 GGCAGCGACCTTTGATGCT 61.043 57.895 3.15 0.00 38.43 3.79
447 1277 2.486966 GGCAGCGACCTTTGATGC 59.513 61.111 0.00 0.00 36.16 3.91
448 1278 2.409870 GGGGCAGCGACCTTTGATG 61.410 63.158 0.45 0.00 0.00 3.07
449 1279 2.044946 GGGGCAGCGACCTTTGAT 60.045 61.111 0.45 0.00 0.00 2.57
450 1280 3.249189 AGGGGCAGCGACCTTTGA 61.249 61.111 1.48 0.00 31.68 2.69
451 1281 2.463589 TACAGGGGCAGCGACCTTTG 62.464 60.000 4.57 0.00 34.05 2.77
452 1282 1.774894 TTACAGGGGCAGCGACCTTT 61.775 55.000 4.57 2.03 34.05 3.11
453 1283 2.221299 TTACAGGGGCAGCGACCTT 61.221 57.895 4.57 1.00 34.05 3.50
454 1284 2.606519 TTACAGGGGCAGCGACCT 60.607 61.111 1.48 1.48 37.66 3.85
455 1285 2.436115 GTTACAGGGGCAGCGACC 60.436 66.667 0.00 0.00 0.00 4.79
456 1286 1.003718 AAGTTACAGGGGCAGCGAC 60.004 57.895 0.00 0.00 0.00 5.19
457 1287 1.192146 AGAAGTTACAGGGGCAGCGA 61.192 55.000 0.00 0.00 0.00 4.93
458 1288 0.741221 GAGAAGTTACAGGGGCAGCG 60.741 60.000 0.00 0.00 0.00 5.18
459 1289 0.324943 TGAGAAGTTACAGGGGCAGC 59.675 55.000 0.00 0.00 0.00 5.25
460 1290 1.339151 GGTGAGAAGTTACAGGGGCAG 60.339 57.143 0.00 0.00 0.00 4.85
461 1291 0.690762 GGTGAGAAGTTACAGGGGCA 59.309 55.000 0.00 0.00 0.00 5.36
462 1292 0.035343 GGGTGAGAAGTTACAGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
463 1293 1.657804 AGGGTGAGAAGTTACAGGGG 58.342 55.000 0.00 0.00 0.00 4.79
464 1294 4.717280 AGATTAGGGTGAGAAGTTACAGGG 59.283 45.833 0.00 0.00 0.00 4.45
465 1295 5.941555 AGATTAGGGTGAGAAGTTACAGG 57.058 43.478 0.00 0.00 0.00 4.00
466 1296 8.239038 TGATAGATTAGGGTGAGAAGTTACAG 57.761 38.462 0.00 0.00 0.00 2.74
467 1297 8.603898 TTGATAGATTAGGGTGAGAAGTTACA 57.396 34.615 0.00 0.00 0.00 2.41
468 1298 9.482627 CATTGATAGATTAGGGTGAGAAGTTAC 57.517 37.037 0.00 0.00 0.00 2.50
469 1299 8.651389 CCATTGATAGATTAGGGTGAGAAGTTA 58.349 37.037 0.00 0.00 0.00 2.24
470 1300 7.348274 TCCATTGATAGATTAGGGTGAGAAGTT 59.652 37.037 0.00 0.00 0.00 2.66
471 1301 6.846505 TCCATTGATAGATTAGGGTGAGAAGT 59.153 38.462 0.00 0.00 0.00 3.01
472 1302 7.308450 TCCATTGATAGATTAGGGTGAGAAG 57.692 40.000 0.00 0.00 0.00 2.85
473 1303 7.690454 TTCCATTGATAGATTAGGGTGAGAA 57.310 36.000 0.00 0.00 0.00 2.87
474 1304 7.513781 TCATTCCATTGATAGATTAGGGTGAGA 59.486 37.037 0.00 0.00 0.00 3.27
475 1305 7.683578 TCATTCCATTGATAGATTAGGGTGAG 58.316 38.462 0.00 0.00 0.00 3.51
476 1306 7.631510 TCATTCCATTGATAGATTAGGGTGA 57.368 36.000 0.00 0.00 0.00 4.02
477 1307 9.388506 GTATCATTCCATTGATAGATTAGGGTG 57.611 37.037 0.00 0.00 38.83 4.61
478 1308 8.260818 CGTATCATTCCATTGATAGATTAGGGT 58.739 37.037 0.00 0.00 38.83 4.34
479 1309 7.225538 GCGTATCATTCCATTGATAGATTAGGG 59.774 40.741 0.00 0.00 38.83 3.53
480 1310 7.984050 AGCGTATCATTCCATTGATAGATTAGG 59.016 37.037 0.00 0.00 38.83 2.69
481 1311 8.939201 AGCGTATCATTCCATTGATAGATTAG 57.061 34.615 0.00 0.00 38.83 1.73
482 1312 9.803315 GTAGCGTATCATTCCATTGATAGATTA 57.197 33.333 0.00 0.00 38.83 1.75
483 1313 7.766278 GGTAGCGTATCATTCCATTGATAGATT 59.234 37.037 0.00 0.00 38.83 2.40
484 1314 7.124901 AGGTAGCGTATCATTCCATTGATAGAT 59.875 37.037 0.00 0.00 38.83 1.98
485 1315 6.437477 AGGTAGCGTATCATTCCATTGATAGA 59.563 38.462 0.00 0.00 38.83 1.98
486 1316 6.634805 AGGTAGCGTATCATTCCATTGATAG 58.365 40.000 0.00 0.00 38.83 2.08
487 1317 6.605471 AGGTAGCGTATCATTCCATTGATA 57.395 37.500 0.00 0.00 37.51 2.15
488 1318 5.489792 AGGTAGCGTATCATTCCATTGAT 57.510 39.130 0.00 0.00 39.60 2.57
489 1319 4.955811 AGGTAGCGTATCATTCCATTGA 57.044 40.909 0.00 0.00 0.00 2.57
490 1320 5.120830 GCTAAGGTAGCGTATCATTCCATTG 59.879 44.000 0.00 0.00 42.62 2.82
491 1321 5.238583 GCTAAGGTAGCGTATCATTCCATT 58.761 41.667 0.00 0.00 42.62 3.16
492 1322 4.822026 GCTAAGGTAGCGTATCATTCCAT 58.178 43.478 0.00 0.00 42.62 3.41
493 1323 4.252971 GCTAAGGTAGCGTATCATTCCA 57.747 45.455 0.00 0.00 42.62 3.53
505 1335 4.931661 TCCCTCAAATACGCTAAGGTAG 57.068 45.455 0.00 0.00 0.00 3.18
506 1336 5.680594 TTTCCCTCAAATACGCTAAGGTA 57.319 39.130 0.00 0.00 0.00 3.08
507 1337 4.563140 TTTCCCTCAAATACGCTAAGGT 57.437 40.909 0.00 0.00 0.00 3.50
508 1338 5.890424 TTTTTCCCTCAAATACGCTAAGG 57.110 39.130 0.00 0.00 0.00 2.69
529 1359 7.849322 AACTCATATGGGTTAAGGTGTTTTT 57.151 32.000 19.57 0.00 0.00 1.94
530 1360 7.256154 CCAAACTCATATGGGTTAAGGTGTTTT 60.256 37.037 21.16 0.00 32.87 2.43
531 1361 6.210584 CCAAACTCATATGGGTTAAGGTGTTT 59.789 38.462 21.16 0.22 32.87 2.83
532 1362 5.714806 CCAAACTCATATGGGTTAAGGTGTT 59.285 40.000 21.16 0.98 32.87 3.32
533 1363 5.261216 CCAAACTCATATGGGTTAAGGTGT 58.739 41.667 21.16 1.74 32.87 4.16
534 1364 5.835113 CCAAACTCATATGGGTTAAGGTG 57.165 43.478 21.16 14.83 32.87 4.00
622 1452 1.349688 TCAAACTAGGGTGGCAACGAT 59.650 47.619 0.00 0.00 42.51 3.73
984 1815 0.396435 TCATATTCCCGAAGCGGCAT 59.604 50.000 1.45 0.00 46.86 4.40
1014 1845 0.539438 ATTCCTGGCCAAGCACGAAA 60.539 50.000 7.01 0.00 0.00 3.46
1189 2021 2.684881 CCATCCGAAGCAGCAAATAACT 59.315 45.455 0.00 0.00 0.00 2.24
1190 2022 2.223572 CCCATCCGAAGCAGCAAATAAC 60.224 50.000 0.00 0.00 0.00 1.89
1191 2023 2.023673 CCCATCCGAAGCAGCAAATAA 58.976 47.619 0.00 0.00 0.00 1.40
1267 2099 4.254709 AGGCACAACAGCTGGCGA 62.255 61.111 19.93 0.00 39.16 5.54
1659 2499 0.959553 GAATATCTGACCGAGGCCGA 59.040 55.000 0.00 0.00 38.22 5.54
1762 2602 2.357446 TCCACGGAGATGGACGGA 59.643 61.111 0.00 0.00 44.14 4.69
1816 2656 2.173669 GGACGACGACATGGCCATG 61.174 63.158 38.53 38.53 44.15 3.66
1919 2759 4.052518 GTGGACATGGGCAGGGCT 62.053 66.667 0.00 0.00 0.00 5.19
2020 2860 2.654404 GGCATAGCCGACGACGAC 60.654 66.667 9.28 0.00 39.62 4.34
2206 3046 2.084610 TCAGCGTGTTCATCCTTCTG 57.915 50.000 0.00 0.00 0.00 3.02
2579 3498 1.574702 GGTTTCGGTTCCTGGCTTCG 61.575 60.000 0.00 0.00 0.00 3.79
2627 3555 1.373435 CCTGGAGTTGCCGTTGGTA 59.627 57.895 0.00 0.00 40.66 3.25
2735 3663 1.134281 GGAGAACGACGAGGACGAC 59.866 63.158 0.00 0.00 42.66 4.34
2936 3864 3.110178 GCGCGTACCGTTGCTCTT 61.110 61.111 8.43 0.00 39.71 2.85
2992 3920 6.174760 TCCTAACCGCGGCAATTTATATATT 58.825 36.000 28.58 9.91 0.00 1.28
2993 3921 5.736813 TCCTAACCGCGGCAATTTATATAT 58.263 37.500 28.58 0.00 0.00 0.86
2994 3922 5.149973 TCCTAACCGCGGCAATTTATATA 57.850 39.130 28.58 3.70 0.00 0.86
2995 3923 4.000988 CTCCTAACCGCGGCAATTTATAT 58.999 43.478 28.58 0.00 0.00 0.86
2996 3924 3.181463 ACTCCTAACCGCGGCAATTTATA 60.181 43.478 28.58 6.65 0.00 0.98
2997 3925 2.218603 CTCCTAACCGCGGCAATTTAT 58.781 47.619 28.58 0.00 0.00 1.40
2998 3926 1.065998 ACTCCTAACCGCGGCAATTTA 60.066 47.619 28.58 15.41 0.00 1.40
3099 4055 3.825160 TTTTCGCCTGCAGGTCGCT 62.825 57.895 31.81 0.00 43.06 4.93
3130 4087 2.657237 CGGAGAAGGCGGTCAAGT 59.343 61.111 0.00 0.00 0.00 3.16
3131 4088 2.125512 CCGGAGAAGGCGGTCAAG 60.126 66.667 0.00 0.00 0.00 3.02
3163 4120 2.745515 AGAGGAAAAGGTACGAGTGC 57.254 50.000 0.00 0.00 0.00 4.40
3224 4182 5.769484 ATTAATGGCAGATGAAGCTTCTG 57.231 39.130 26.09 17.50 42.83 3.02
3252 4210 6.003950 ACCATGAAAGGGATATGTATTTCGG 58.996 40.000 0.00 0.00 43.46 4.30
3275 4233 2.094906 GCGGTGGGGAACAAATTTAGAC 60.095 50.000 0.00 0.00 0.00 2.59
3535 5542 3.406764 CCTTTCCATCACTAGGCTATGC 58.593 50.000 0.00 0.00 0.00 3.14
3536 5543 3.244700 CCCCTTTCCATCACTAGGCTATG 60.245 52.174 0.00 0.00 0.00 2.23
3537 5544 2.982488 CCCCTTTCCATCACTAGGCTAT 59.018 50.000 0.00 0.00 0.00 2.97
3538 5545 2.408565 CCCCTTTCCATCACTAGGCTA 58.591 52.381 0.00 0.00 0.00 3.93
3539 5546 1.216990 CCCCTTTCCATCACTAGGCT 58.783 55.000 0.00 0.00 0.00 4.58
3540 5547 0.466372 GCCCCTTTCCATCACTAGGC 60.466 60.000 0.00 0.00 0.00 3.93
3541 5548 1.133976 CAGCCCCTTTCCATCACTAGG 60.134 57.143 0.00 0.00 0.00 3.02
3542 5549 1.133976 CCAGCCCCTTTCCATCACTAG 60.134 57.143 0.00 0.00 0.00 2.57
3543 5550 0.918983 CCAGCCCCTTTCCATCACTA 59.081 55.000 0.00 0.00 0.00 2.74
3544 5551 1.693640 CCAGCCCCTTTCCATCACT 59.306 57.895 0.00 0.00 0.00 3.41
3545 5552 2.054453 GCCAGCCCCTTTCCATCAC 61.054 63.158 0.00 0.00 0.00 3.06
3546 5553 2.360191 GCCAGCCCCTTTCCATCA 59.640 61.111 0.00 0.00 0.00 3.07
3547 5554 2.830370 CGCCAGCCCCTTTCCATC 60.830 66.667 0.00 0.00 0.00 3.51
3548 5555 3.645268 GACGCCAGCCCCTTTCCAT 62.645 63.158 0.00 0.00 0.00 3.41
3549 5556 4.344865 GACGCCAGCCCCTTTCCA 62.345 66.667 0.00 0.00 0.00 3.53
3550 5557 3.569200 AAGACGCCAGCCCCTTTCC 62.569 63.158 0.00 0.00 0.00 3.13
3551 5558 2.034221 AAGACGCCAGCCCCTTTC 59.966 61.111 0.00 0.00 0.00 2.62
3552 5559 2.034221 GAAGACGCCAGCCCCTTT 59.966 61.111 0.00 0.00 0.00 3.11
3553 5560 4.035102 GGAAGACGCCAGCCCCTT 62.035 66.667 0.00 0.00 0.00 3.95
3559 5566 2.876368 GATGGGTGGGAAGACGCCAG 62.876 65.000 0.00 0.00 42.82 4.85
3560 5567 2.933287 ATGGGTGGGAAGACGCCA 60.933 61.111 0.00 0.00 42.82 5.69
3561 5568 2.124695 GATGGGTGGGAAGACGCC 60.125 66.667 0.00 0.00 40.31 5.68
3562 5569 2.124695 GGATGGGTGGGAAGACGC 60.125 66.667 0.00 0.00 0.00 5.19
3563 5570 1.221840 CTGGATGGGTGGGAAGACG 59.778 63.158 0.00 0.00 0.00 4.18
3564 5571 1.208165 ACCTGGATGGGTGGGAAGAC 61.208 60.000 0.00 0.00 41.11 3.01
3565 5572 0.477597 AACCTGGATGGGTGGGAAGA 60.478 55.000 0.00 0.00 39.85 2.87
3566 5573 0.409484 AAACCTGGATGGGTGGGAAG 59.591 55.000 0.00 0.00 39.85 3.46
3567 5574 1.761711 TAAACCTGGATGGGTGGGAA 58.238 50.000 0.00 0.00 39.85 3.97
3568 5575 1.638589 CTTAAACCTGGATGGGTGGGA 59.361 52.381 0.00 0.00 39.85 4.37
3569 5576 1.638589 TCTTAAACCTGGATGGGTGGG 59.361 52.381 0.00 0.00 39.85 4.61
3570 5577 2.041081 TGTCTTAAACCTGGATGGGTGG 59.959 50.000 0.00 0.00 39.85 4.61
3571 5578 3.433306 TGTCTTAAACCTGGATGGGTG 57.567 47.619 0.00 0.00 39.85 4.61
3572 5579 3.309121 CCATGTCTTAAACCTGGATGGGT 60.309 47.826 0.00 0.00 44.16 4.51
3573 5580 3.290710 CCATGTCTTAAACCTGGATGGG 58.709 50.000 0.00 0.00 44.16 4.00
3574 5581 3.968265 ACCATGTCTTAAACCTGGATGG 58.032 45.455 0.00 2.78 44.16 3.51
3575 5582 7.645058 AAATACCATGTCTTAAACCTGGATG 57.355 36.000 0.00 0.00 44.16 3.51
3576 5583 8.333235 TGTAAATACCATGTCTTAAACCTGGAT 58.667 33.333 0.00 0.00 44.16 3.41
3577 5584 7.691213 TGTAAATACCATGTCTTAAACCTGGA 58.309 34.615 0.00 4.39 44.16 3.86
3578 5585 7.931578 TGTAAATACCATGTCTTAAACCTGG 57.068 36.000 0.00 0.00 46.14 4.45
3584 5591 9.315363 ACCCAAATTGTAAATACCATGTCTTAA 57.685 29.630 0.00 0.00 0.00 1.85
3585 5592 8.887264 ACCCAAATTGTAAATACCATGTCTTA 57.113 30.769 0.00 0.00 0.00 2.10
3586 5593 7.790782 ACCCAAATTGTAAATACCATGTCTT 57.209 32.000 0.00 0.00 0.00 3.01
3587 5594 7.790782 AACCCAAATTGTAAATACCATGTCT 57.209 32.000 0.00 0.00 0.00 3.41
3588 5595 7.875554 ACAAACCCAAATTGTAAATACCATGTC 59.124 33.333 0.00 0.00 39.14 3.06
3589 5596 7.740805 ACAAACCCAAATTGTAAATACCATGT 58.259 30.769 0.00 0.00 39.14 3.21
3590 5597 8.502387 CAACAAACCCAAATTGTAAATACCATG 58.498 33.333 0.00 0.00 39.98 3.66
3591 5598 7.174080 GCAACAAACCCAAATTGTAAATACCAT 59.826 33.333 0.00 0.00 39.98 3.55
3592 5599 6.483640 GCAACAAACCCAAATTGTAAATACCA 59.516 34.615 0.00 0.00 39.98 3.25
3593 5600 6.483640 TGCAACAAACCCAAATTGTAAATACC 59.516 34.615 0.00 0.00 39.98 2.73
3594 5601 7.348956 GTGCAACAAACCCAAATTGTAAATAC 58.651 34.615 0.00 0.00 39.98 1.89
3595 5602 6.483640 GGTGCAACAAACCCAAATTGTAAATA 59.516 34.615 0.00 0.00 39.98 1.40
3596 5603 5.298026 GGTGCAACAAACCCAAATTGTAAAT 59.702 36.000 0.00 0.00 39.98 1.40
3597 5604 4.636206 GGTGCAACAAACCCAAATTGTAAA 59.364 37.500 0.00 0.00 39.98 2.01
3598 5605 4.192317 GGTGCAACAAACCCAAATTGTAA 58.808 39.130 0.00 0.00 39.98 2.41
3599 5606 3.197766 TGGTGCAACAAACCCAAATTGTA 59.802 39.130 0.00 0.00 39.98 2.41
3600 5607 2.026822 TGGTGCAACAAACCCAAATTGT 60.027 40.909 0.00 0.00 42.56 2.71
3601 5608 2.636830 TGGTGCAACAAACCCAAATTG 58.363 42.857 0.00 0.00 39.98 2.32
3602 5609 3.356529 TTGGTGCAACAAACCCAAATT 57.643 38.095 16.46 0.00 39.98 1.82
3603 5610 3.574354 ATTGGTGCAACAAACCCAAAT 57.426 38.095 23.14 0.00 40.16 2.32
3604 5611 3.356529 AATTGGTGCAACAAACCCAAA 57.643 38.095 23.14 0.00 40.16 3.28
3605 5612 4.696479 ATAATTGGTGCAACAAACCCAA 57.304 36.364 23.14 14.03 39.98 4.12
3606 5613 4.835615 AGTATAATTGGTGCAACAAACCCA 59.164 37.500 23.14 3.95 39.98 4.51
3607 5614 5.167845 CAGTATAATTGGTGCAACAAACCC 58.832 41.667 23.14 7.99 39.98 4.11
3608 5615 5.778862 ACAGTATAATTGGTGCAACAAACC 58.221 37.500 23.14 7.62 39.98 3.27
3609 5616 7.027161 CCTACAGTATAATTGGTGCAACAAAC 58.973 38.462 23.14 15.04 39.98 2.93
3610 5617 6.151985 CCCTACAGTATAATTGGTGCAACAAA 59.848 38.462 23.14 6.25 39.98 2.83
3611 5618 5.650266 CCCTACAGTATAATTGGTGCAACAA 59.350 40.000 21.46 21.46 39.98 2.83
3612 5619 5.045505 TCCCTACAGTATAATTGGTGCAACA 60.046 40.000 0.00 0.00 39.98 3.33
3613 5620 5.433526 TCCCTACAGTATAATTGGTGCAAC 58.566 41.667 0.00 0.00 0.00 4.17
3614 5621 5.702065 TCCCTACAGTATAATTGGTGCAA 57.298 39.130 0.00 0.00 0.00 4.08
3615 5622 5.904984 ATCCCTACAGTATAATTGGTGCA 57.095 39.130 0.00 0.00 0.00 4.57
3616 5623 5.705905 GGAATCCCTACAGTATAATTGGTGC 59.294 44.000 0.00 0.00 0.00 5.01
3617 5624 6.238648 GGGAATCCCTACAGTATAATTGGTG 58.761 44.000 11.95 0.00 41.34 4.17
3618 5625 6.449830 GGGAATCCCTACAGTATAATTGGT 57.550 41.667 11.95 0.00 41.34 3.67
3629 5636 8.943070 CAGAAAGACTGTAAGGGAATCCCTACA 61.943 44.444 23.14 21.90 46.34 2.74
3630 5637 6.630638 CAGAAAGACTGTAAGGGAATCCCTAC 60.631 46.154 23.14 18.78 46.34 3.18
3631 5638 5.425539 CAGAAAGACTGTAAGGGAATCCCTA 59.574 44.000 23.14 5.03 46.34 3.53
3633 5640 4.518249 CAGAAAGACTGTAAGGGAATCCC 58.482 47.826 11.16 11.16 41.78 3.85
3766 5773 6.032094 CCGAACGTACAAATATGACTACAGT 58.968 40.000 0.00 0.00 0.00 3.55
3808 5815 3.589988 ACAATCAGAGCGGTTCTACAAG 58.410 45.455 0.00 0.00 33.83 3.16
3814 5821 2.961526 TCCTACAATCAGAGCGGTTC 57.038 50.000 0.00 0.00 0.00 3.62
3864 5874 3.313526 GGAATACATCTCGTGCTGCATTT 59.686 43.478 5.27 0.00 0.00 2.32
3871 5881 4.083802 GGCAAATAGGAATACATCTCGTGC 60.084 45.833 0.00 0.00 0.00 5.34
3873 5883 5.305644 AGAGGCAAATAGGAATACATCTCGT 59.694 40.000 0.00 0.00 0.00 4.18
3912 5922 0.710567 CTCAGACGTCGTTCATGCAC 59.289 55.000 10.46 0.00 0.00 4.57
4081 6094 1.896660 GCAAACTGACCCTGCCGAA 60.897 57.895 0.00 0.00 0.00 4.30
4132 6151 0.963355 GCCCGTAACCTGCAATCCAA 60.963 55.000 0.00 0.00 0.00 3.53
4154 6173 2.822255 TAGAAATGCCGTGGCCGC 60.822 61.111 6.11 6.11 41.09 6.53
4204 6229 5.799936 CGAGAGCAAGTTTCAAACAAAAAGA 59.200 36.000 2.41 0.00 0.00 2.52
4205 6230 5.004726 CCGAGAGCAAGTTTCAAACAAAAAG 59.995 40.000 2.41 0.00 0.00 2.27
4211 6236 2.218603 TCCCGAGAGCAAGTTTCAAAC 58.781 47.619 0.00 0.00 0.00 2.93
4213 6238 1.270839 CCTCCCGAGAGCAAGTTTCAA 60.271 52.381 0.00 0.00 38.96 2.69
4226 6251 2.561419 CAGTTACTCAAAGTCCTCCCGA 59.439 50.000 0.00 0.00 0.00 5.14
4340 6365 6.757237 AGATTATGAGTGAGATGATGTGACC 58.243 40.000 0.00 0.00 0.00 4.02
4385 6410 4.576993 GCCAATGAAACCGGCTTG 57.423 55.556 0.00 0.00 42.78 4.01
4430 6457 8.951787 ACGTTTATATTGTTTGTGCCTCTATA 57.048 30.769 0.00 0.00 0.00 1.31
4450 6478 5.096849 GTGTGTTTTTGTGTATGGACGTTT 58.903 37.500 0.00 0.00 0.00 3.60
4454 6482 4.606961 CTGGTGTGTTTTTGTGTATGGAC 58.393 43.478 0.00 0.00 0.00 4.02
4455 6483 3.067461 GCTGGTGTGTTTTTGTGTATGGA 59.933 43.478 0.00 0.00 0.00 3.41
4456 6484 3.181482 TGCTGGTGTGTTTTTGTGTATGG 60.181 43.478 0.00 0.00 0.00 2.74
4457 6485 4.039151 TGCTGGTGTGTTTTTGTGTATG 57.961 40.909 0.00 0.00 0.00 2.39
4458 6486 4.727507 TTGCTGGTGTGTTTTTGTGTAT 57.272 36.364 0.00 0.00 0.00 2.29
4459 6487 4.521130 TTTGCTGGTGTGTTTTTGTGTA 57.479 36.364 0.00 0.00 0.00 2.90
4460 6488 3.393089 TTTGCTGGTGTGTTTTTGTGT 57.607 38.095 0.00 0.00 0.00 3.72
4461 6489 5.108517 ACTATTTGCTGGTGTGTTTTTGTG 58.891 37.500 0.00 0.00 0.00 3.33
4462 6490 5.337578 ACTATTTGCTGGTGTGTTTTTGT 57.662 34.783 0.00 0.00 0.00 2.83
4463 6491 7.491048 ACTTTACTATTTGCTGGTGTGTTTTTG 59.509 33.333 0.00 0.00 0.00 2.44
4464 6492 7.552459 ACTTTACTATTTGCTGGTGTGTTTTT 58.448 30.769 0.00 0.00 0.00 1.94
4465 6493 7.107639 ACTTTACTATTTGCTGGTGTGTTTT 57.892 32.000 0.00 0.00 0.00 2.43
4466 6494 6.320164 TGACTTTACTATTTGCTGGTGTGTTT 59.680 34.615 0.00 0.00 0.00 2.83
4467 6495 5.825679 TGACTTTACTATTTGCTGGTGTGTT 59.174 36.000 0.00 0.00 0.00 3.32
4468 6496 5.373222 TGACTTTACTATTTGCTGGTGTGT 58.627 37.500 0.00 0.00 0.00 3.72
4469 6497 5.940192 TGACTTTACTATTTGCTGGTGTG 57.060 39.130 0.00 0.00 0.00 3.82
4496 6524 2.760634 TTCTCGCATAGCTTTGGTCA 57.239 45.000 6.29 0.00 0.00 4.02
4497 6525 4.419522 TTTTTCTCGCATAGCTTTGGTC 57.580 40.909 6.29 0.00 0.00 4.02
4527 6555 3.194062 CATTGCGTGGTTTGAGGTTTTT 58.806 40.909 0.00 0.00 0.00 1.94
4528 6556 2.167487 ACATTGCGTGGTTTGAGGTTTT 59.833 40.909 0.00 0.00 0.00 2.43
4529 6557 1.754226 ACATTGCGTGGTTTGAGGTTT 59.246 42.857 0.00 0.00 0.00 3.27
4530 6558 1.398692 ACATTGCGTGGTTTGAGGTT 58.601 45.000 0.00 0.00 0.00 3.50
4531 6559 1.398692 AACATTGCGTGGTTTGAGGT 58.601 45.000 0.00 0.00 0.00 3.85
4552 6580 4.753107 GGACGAAATAAACTGTGGAAGACA 59.247 41.667 0.00 0.00 0.00 3.41
4561 6589 6.656003 AGAAAAAGACGGACGAAATAAACTG 58.344 36.000 0.00 0.00 0.00 3.16
4562 6590 6.856135 AGAAAAAGACGGACGAAATAAACT 57.144 33.333 0.00 0.00 0.00 2.66
4572 6600 1.595794 TGCACGAAGAAAAAGACGGAC 59.404 47.619 0.00 0.00 0.00 4.79
4576 6604 2.854805 GCCAGTGCACGAAGAAAAAGAC 60.855 50.000 12.01 0.00 37.47 3.01
4644 6674 1.002544 GTGAGGGACAAGGGAAGAGTG 59.997 57.143 0.00 0.00 0.00 3.51
4669 6699 4.159879 CGTAGTAGGGTCAGGAAAAGACAT 59.840 45.833 0.00 0.00 37.74 3.06
4680 6710 2.430248 TCTGATGCGTAGTAGGGTCA 57.570 50.000 0.00 0.00 0.00 4.02
4687 6717 1.276421 GGGGCATATCTGATGCGTAGT 59.724 52.381 0.00 0.00 45.41 2.73
4693 6723 0.686789 TCGGTGGGGCATATCTGATG 59.313 55.000 0.00 0.00 0.00 3.07
4698 6728 2.224523 TGAAGATTCGGTGGGGCATATC 60.225 50.000 0.00 0.00 0.00 1.63
4720 6750 2.076100 GTGGTTCGATGATGTTGAGCA 58.924 47.619 0.00 0.00 0.00 4.26
4725 6755 1.909302 AGGAGGTGGTTCGATGATGTT 59.091 47.619 0.00 0.00 0.00 2.71
4734 6764 3.842925 TTGCGGCAGGAGGTGGTTC 62.843 63.158 1.67 0.00 0.00 3.62
4771 6801 5.467670 GGTGGTAACCATGGGACATTGATC 61.468 50.000 18.09 0.74 46.75 2.92
4809 6839 0.401395 AGAAGTTGGGGGAGGTCACA 60.401 55.000 0.00 0.00 0.00 3.58
4811 6841 1.064825 GAAGAAGTTGGGGGAGGTCA 58.935 55.000 0.00 0.00 0.00 4.02
4840 6870 2.483745 GGAGACGACATCGCGTGA 59.516 61.111 5.77 0.00 45.72 4.35
4855 6885 2.438021 GTGTCAATGGGTATAGCAGGGA 59.562 50.000 4.02 0.00 0.00 4.20
4891 6921 0.263172 GGAGAGAGGGATCAGGGACA 59.737 60.000 0.00 0.00 0.00 4.02
4927 6957 0.751277 TGTGTTGCTTGTGTGGAGGG 60.751 55.000 0.00 0.00 0.00 4.30
4929 6959 3.402110 TCTATGTGTTGCTTGTGTGGAG 58.598 45.455 0.00 0.00 0.00 3.86
4930 6960 3.070878 TCTCTATGTGTTGCTTGTGTGGA 59.929 43.478 0.00 0.00 0.00 4.02
4931 6961 3.402110 TCTCTATGTGTTGCTTGTGTGG 58.598 45.455 0.00 0.00 0.00 4.17
4959 6989 2.815503 CAAGTGATTGTGACTGCCATGA 59.184 45.455 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.