Multiple sequence alignment - TraesCS6D01G173000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G173000 chr6D 100.000 2449 0 0 1 2449 160430874 160428426 0.000000e+00 4523.0
1 TraesCS6D01G173000 chr6D 100.000 593 0 0 2726 3318 160428149 160427557 0.000000e+00 1096.0
2 TraesCS6D01G173000 chr6A 96.627 1749 44 10 714 2449 219562882 219561136 0.000000e+00 2889.0
3 TraesCS6D01G173000 chr6A 91.396 616 20 8 2726 3318 219561089 219560484 0.000000e+00 813.0
4 TraesCS6D01G173000 chr6A 93.915 493 15 2 203 693 219563344 219562865 0.000000e+00 730.0
5 TraesCS6D01G173000 chr6B 97.251 1346 28 4 728 2065 290597834 290596490 0.000000e+00 2272.0
6 TraesCS6D01G173000 chr6B 95.683 1251 31 6 1217 2449 290628901 290627656 0.000000e+00 1989.0
7 TraesCS6D01G173000 chr6B 95.568 925 23 5 1538 2449 290657080 290656161 0.000000e+00 1465.0
8 TraesCS6D01G173000 chr6B 96.248 693 25 1 1 693 290598508 290597817 0.000000e+00 1134.0
9 TraesCS6D01G173000 chr6B 96.093 691 26 1 1 691 290630280 290629591 0.000000e+00 1125.0
10 TraesCS6D01G173000 chr6B 95.369 691 31 1 1 691 290659124 290658435 0.000000e+00 1098.0
11 TraesCS6D01G173000 chr6B 92.869 617 15 6 2726 3318 290656075 290655464 0.000000e+00 869.0
12 TraesCS6D01G173000 chr6B 92.545 617 17 6 2726 3318 290595725 290595114 0.000000e+00 857.0
13 TraesCS6D01G173000 chr6B 97.982 446 9 0 730 1175 290629606 290629161 0.000000e+00 774.0
14 TraesCS6D01G173000 chr6B 91.538 520 15 6 2823 3318 290627206 290626692 0.000000e+00 689.0
15 TraesCS6D01G173000 chr6B 96.212 132 5 0 730 861 290658450 290658319 2.000000e-52 217.0
16 TraesCS6D01G173000 chrUn 95.883 923 22 11 1538 2449 453960156 453961073 0.000000e+00 1480.0
17 TraesCS6D01G173000 chrUn 97.970 788 14 2 1279 2065 466322133 466322919 0.000000e+00 1365.0
18 TraesCS6D01G173000 chr7B 89.873 79 8 0 1639 1717 485430551 485430473 5.860000e-18 102.0
19 TraesCS6D01G173000 chr7D 95.161 62 3 0 1656 1717 462281558 462281497 7.580000e-17 99.0
20 TraesCS6D01G173000 chr7A 88.608 79 9 0 1639 1717 537663146 537663224 2.720000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G173000 chr6D 160427557 160430874 3317 True 2809.500000 4523 100.000000 1 3318 2 chr6D.!!$R1 3317
1 TraesCS6D01G173000 chr6A 219560484 219563344 2860 True 1477.333333 2889 93.979333 203 3318 3 chr6A.!!$R1 3115
2 TraesCS6D01G173000 chr6B 290595114 290598508 3394 True 1421.000000 2272 95.348000 1 3318 3 chr6B.!!$R1 3317
3 TraesCS6D01G173000 chr6B 290626692 290630280 3588 True 1144.250000 1989 95.324000 1 3318 4 chr6B.!!$R2 3317
4 TraesCS6D01G173000 chr6B 290655464 290659124 3660 True 912.250000 1465 95.004500 1 3318 4 chr6B.!!$R3 3317
5 TraesCS6D01G173000 chrUn 453960156 453961073 917 False 1480.000000 1480 95.883000 1538 2449 1 chrUn.!!$F1 911
6 TraesCS6D01G173000 chrUn 466322133 466322919 786 False 1365.000000 1365 97.970000 1279 2065 1 chrUn.!!$F2 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 1.000163 TGTTCTCAGAGAGTGGCGTTC 60.000 52.381 0.00 0.0 0.00 3.95 F
1213 1232 0.253160 TAATCAGCAGGTGAGGGGGT 60.253 55.000 8.56 0.0 39.07 4.95 F
1681 2260 0.255890 ACTGCAACACCACCAAGACT 59.744 50.000 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 2260 0.836400 GACCACTCCTCCACAAGGGA 60.836 60.000 0.0 0.0 46.23 4.20 R
2077 2657 0.035458 ACCTCTTCTTGAACGGCAGG 59.965 55.000 0.0 0.0 0.00 4.85 R
2829 3513 2.889678 AGCAGAGCAAAGAAAGGAAAGG 59.110 45.455 0.0 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.000163 TGTTCTCAGAGAGTGGCGTTC 60.000 52.381 0.00 0.00 0.00 3.95
42 43 2.306512 TGGCGTTCCCTAACCACTTATT 59.693 45.455 0.00 0.00 31.46 1.40
45 46 3.373130 GCGTTCCCTAACCACTTATTCAC 59.627 47.826 0.00 0.00 31.46 3.18
68 69 2.093106 AGAAACGTATCTCAGAGCCGT 58.907 47.619 0.00 0.00 0.00 5.68
251 252 8.780846 TTAACATAGGGTAGTACAACACATTG 57.219 34.615 2.06 0.00 41.98 2.82
303 304 4.622815 TCATGGTTTTGATCAATGGGGAT 58.377 39.130 9.40 0.00 0.00 3.85
682 685 4.022935 CCTCTATGTGCAAGCTAGAGAGAG 60.023 50.000 21.42 11.72 40.51 3.20
683 686 4.786425 TCTATGTGCAAGCTAGAGAGAGA 58.214 43.478 0.00 0.00 0.00 3.10
684 687 4.821260 TCTATGTGCAAGCTAGAGAGAGAG 59.179 45.833 0.00 0.00 0.00 3.20
685 688 3.078891 TGTGCAAGCTAGAGAGAGAGA 57.921 47.619 0.00 0.00 0.00 3.10
686 689 3.016031 TGTGCAAGCTAGAGAGAGAGAG 58.984 50.000 0.00 0.00 0.00 3.20
687 690 3.278574 GTGCAAGCTAGAGAGAGAGAGA 58.721 50.000 0.00 0.00 0.00 3.10
688 691 3.313526 GTGCAAGCTAGAGAGAGAGAGAG 59.686 52.174 0.00 0.00 0.00 3.20
689 692 3.199727 TGCAAGCTAGAGAGAGAGAGAGA 59.800 47.826 0.00 0.00 0.00 3.10
690 693 3.812053 GCAAGCTAGAGAGAGAGAGAGAG 59.188 52.174 0.00 0.00 0.00 3.20
691 694 4.443457 GCAAGCTAGAGAGAGAGAGAGAGA 60.443 50.000 0.00 0.00 0.00 3.10
692 695 5.295950 CAAGCTAGAGAGAGAGAGAGAGAG 58.704 50.000 0.00 0.00 0.00 3.20
693 696 4.809193 AGCTAGAGAGAGAGAGAGAGAGA 58.191 47.826 0.00 0.00 0.00 3.10
694 697 4.832266 AGCTAGAGAGAGAGAGAGAGAGAG 59.168 50.000 0.00 0.00 0.00 3.20
695 698 4.830046 GCTAGAGAGAGAGAGAGAGAGAGA 59.170 50.000 0.00 0.00 0.00 3.10
696 699 5.048083 GCTAGAGAGAGAGAGAGAGAGAGAG 60.048 52.000 0.00 0.00 0.00 3.20
697 700 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
698 701 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
699 702 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
700 703 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
701 704 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
702 705 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
703 706 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
704 707 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
705 708 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
706 709 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
707 710 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
708 711 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
709 712 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
710 713 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
711 714 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
712 715 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
713 716 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
714 717 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
715 718 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
716 719 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
717 720 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
718 721 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
719 722 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
720 723 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
721 724 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
722 725 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
723 726 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
724 727 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
725 728 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
726 729 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
727 730 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
728 731 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
729 732 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
730 733 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
731 734 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
732 735 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
733 736 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
748 765 3.706594 GAGAGAGAGAGAGAGAGAGGTGA 59.293 52.174 0.00 0.00 0.00 4.02
1102 1119 3.969976 TCATCTACCCAAAGATCCTCCTG 59.030 47.826 0.00 0.00 33.87 3.86
1213 1232 0.253160 TAATCAGCAGGTGAGGGGGT 60.253 55.000 8.56 0.00 39.07 4.95
1227 1462 0.321653 GGGGGTGTCACAACTAGCTG 60.322 60.000 5.12 0.00 0.00 4.24
1681 2260 0.255890 ACTGCAACACCACCAAGACT 59.744 50.000 0.00 0.00 0.00 3.24
2029 2609 1.960763 AAGCGACGCATCACAAGCA 60.961 52.632 23.70 0.00 0.00 3.91
2149 2729 4.681978 AAGGCCGTGGCTGTCGAC 62.682 66.667 9.11 9.11 38.81 4.20
2179 2759 3.061295 CGAAGGATCAAGATCACGTTGTG 59.939 47.826 11.78 0.00 39.54 3.33
2354 2946 4.934001 ACACTAGACACTGATGAATGCAAG 59.066 41.667 0.00 0.00 0.00 4.01
2429 3021 6.703607 TGTGATCTTGTTGTTTTGTGTTGTTT 59.296 30.769 0.00 0.00 0.00 2.83
2829 3513 7.544622 AGGGTGAGTTTTTCTTTTACAGTTTC 58.455 34.615 0.00 0.00 0.00 2.78
2858 3542 0.874390 CTTTGCTCTGCTGCGGTTAA 59.126 50.000 8.55 0.00 35.36 2.01
2860 3544 1.533625 TTGCTCTGCTGCGGTTAATT 58.466 45.000 8.55 0.00 35.36 1.40
2861 3545 2.394930 TGCTCTGCTGCGGTTAATTA 57.605 45.000 8.55 0.00 35.36 1.40
2862 3546 2.917933 TGCTCTGCTGCGGTTAATTAT 58.082 42.857 8.55 0.00 35.36 1.28
2863 3547 2.872245 TGCTCTGCTGCGGTTAATTATC 59.128 45.455 8.55 0.00 35.36 1.75
2991 3697 2.351060 CGGTGCATCATATTGGATGTGC 60.351 50.000 0.00 0.00 45.11 4.57
3086 3792 6.421202 GTCGATCCTCCTAATTGTGTATTGTC 59.579 42.308 0.00 0.00 0.00 3.18
3094 3800 8.362464 TCCTAATTGTGTATTGTCACTACTCT 57.638 34.615 2.45 0.00 38.90 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.521937 TCTGGGTGAATAAGTGGTTAGGG 59.478 47.826 0.00 0.00 0.00 3.53
42 43 3.427573 TCTGAGATACGTTTCTGGGTGA 58.572 45.455 13.50 3.58 0.00 4.02
45 46 2.482142 GGCTCTGAGATACGTTTCTGGG 60.482 54.545 13.50 5.97 0.00 4.45
68 69 5.914635 GCTTTTGATCTTTCACGACAAATGA 59.085 36.000 0.00 0.00 32.05 2.57
110 111 3.134127 GGTTGGTCTGATGGCGGC 61.134 66.667 0.00 0.00 0.00 6.53
251 252 4.142359 CCTGTCTAGCATATATGTCGGGTC 60.142 50.000 14.14 0.00 0.00 4.46
303 304 4.993705 AGATAAGGGTTCAAGGACAACA 57.006 40.909 0.00 0.00 0.00 3.33
682 685 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
683 686 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
684 687 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
685 688 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
686 689 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
687 690 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
688 691 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
689 692 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
690 693 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
691 694 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
692 695 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
693 696 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
694 697 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
695 698 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
696 699 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
697 700 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
698 701 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
699 702 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
700 703 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
701 704 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
702 705 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
703 706 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
704 707 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
705 708 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
706 709 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
707 710 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
708 711 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
709 712 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
710 713 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
711 714 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
712 715 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
713 716 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
714 717 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
715 718 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
716 719 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
717 720 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
718 721 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
719 722 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
720 723 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
721 724 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
722 725 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
723 726 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
724 727 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
725 728 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
726 729 3.706594 TCACCTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
727 730 3.724478 TCACCTCTCTCTCTCTCTCTCT 58.276 50.000 0.00 0.00 0.00 3.10
728 731 4.696479 ATCACCTCTCTCTCTCTCTCTC 57.304 50.000 0.00 0.00 0.00 3.20
729 732 4.040952 GCTATCACCTCTCTCTCTCTCTCT 59.959 50.000 0.00 0.00 0.00 3.10
730 733 4.040952 AGCTATCACCTCTCTCTCTCTCTC 59.959 50.000 0.00 0.00 0.00 3.20
731 734 3.976654 AGCTATCACCTCTCTCTCTCTCT 59.023 47.826 0.00 0.00 0.00 3.10
732 735 4.357918 AGCTATCACCTCTCTCTCTCTC 57.642 50.000 0.00 0.00 0.00 3.20
733 736 4.165950 TCAAGCTATCACCTCTCTCTCTCT 59.834 45.833 0.00 0.00 0.00 3.10
1102 1119 4.093556 GTCGATCATGAAAGGGAACAAGAC 59.906 45.833 0.00 0.00 0.00 3.01
1213 1232 1.967779 TGTAGCCAGCTAGTTGTGACA 59.032 47.619 5.81 3.97 0.00 3.58
1227 1462 9.366216 TCGATATTGACATATATTTGTGTAGCC 57.634 33.333 3.33 0.00 0.00 3.93
1511 1751 1.043116 ATCCTCATCTTCACCGGCGA 61.043 55.000 9.30 0.00 0.00 5.54
1681 2260 0.836400 GACCACTCCTCCACAAGGGA 60.836 60.000 0.00 0.00 46.23 4.20
2029 2609 3.117888 TCTCCTTCTTTGTTGCCTTCACT 60.118 43.478 0.00 0.00 0.00 3.41
2077 2657 0.035458 ACCTCTTCTTGAACGGCAGG 59.965 55.000 0.00 0.00 0.00 4.85
2149 2729 0.807667 CTTGATCCTTCGGAGTGGCG 60.808 60.000 0.00 0.00 34.05 5.69
2233 2813 0.166814 GCATGAAGCCGTGAGTGAAC 59.833 55.000 0.00 0.00 37.23 3.18
2429 3021 0.321387 CCCGATCGACCGATCTCCTA 60.321 60.000 24.22 0.00 46.36 2.94
2829 3513 2.889678 AGCAGAGCAAAGAAAGGAAAGG 59.110 45.455 0.00 0.00 0.00 3.11
3086 3792 4.804608 AACGATCGATGAGAGAGTAGTG 57.195 45.455 24.34 0.00 0.00 2.74
3094 3800 4.675408 GCATAGCCATAACGATCGATGAGA 60.675 45.833 24.34 5.11 0.00 3.27
3226 3934 7.015877 CGAAAAAGGTGAAAAGTAGTATGAGC 58.984 38.462 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.