Multiple sequence alignment - TraesCS6D01G172900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G172900 chr6D 100.000 3822 0 0 2758 6579 159790737 159786916 0.000000e+00 7059.0
1 TraesCS6D01G172900 chr6D 100.000 2353 0 0 1 2353 159793494 159791142 0.000000e+00 4346.0
2 TraesCS6D01G172900 chr6D 97.489 1633 39 2 721 2353 159714178 159715808 0.000000e+00 2787.0
3 TraesCS6D01G172900 chr6D 94.870 1267 61 4 3119 4384 159716422 159717685 0.000000e+00 1977.0
4 TraesCS6D01G172900 chr6D 92.985 1226 80 5 5357 6579 159779760 159780982 0.000000e+00 1783.0
5 TraesCS6D01G172900 chr6D 98.148 702 11 2 4384 5084 100717989 100717289 0.000000e+00 1223.0
6 TraesCS6D01G172900 chr6D 97.589 705 13 3 4383 5085 189435045 189434343 0.000000e+00 1205.0
7 TraesCS6D01G172900 chr6D 92.535 710 50 3 4376 5084 304211347 304212054 0.000000e+00 1014.0
8 TraesCS6D01G172900 chr6D 86.010 822 97 10 5175 5979 159715441 159716261 0.000000e+00 865.0
9 TraesCS6D01G172900 chr6D 96.053 304 12 0 2759 3062 159716127 159716430 4.580000e-136 496.0
10 TraesCS6D01G172900 chr6D 89.744 273 26 2 5084 5356 159717675 159717945 1.360000e-91 348.0
11 TraesCS6D01G172900 chr6D 91.304 184 15 1 1985 2168 159717765 159717947 3.940000e-62 250.0
12 TraesCS6D01G172900 chr6D 88.971 136 15 0 2758 2893 159787651 159787516 1.130000e-37 169.0
13 TraesCS6D01G172900 chr6D 90.833 120 11 0 2758 2877 159780247 159780366 1.900000e-35 161.0
14 TraesCS6D01G172900 chr6D 90.476 105 9 1 617 721 13065430 13065533 3.200000e-28 137.0
15 TraesCS6D01G172900 chr6D 85.437 103 15 0 6454 6556 108250007 108249905 2.510000e-19 108.0
16 TraesCS6D01G172900 chrUn 98.894 1627 18 0 2758 4384 244766770 244765144 0.000000e+00 2905.0
17 TraesCS6D01G172900 chrUn 98.053 976 18 1 5084 6059 244765154 244764180 0.000000e+00 1696.0
18 TraesCS6D01G172900 chrUn 100.000 839 0 0 2758 3596 244756024 244755186 0.000000e+00 1550.0
19 TraesCS6D01G172900 chrUn 99.615 519 2 0 721 1239 244758463 244757945 0.000000e+00 948.0
20 TraesCS6D01G172900 chrUn 100.000 492 0 0 1862 2353 244756833 244756342 0.000000e+00 909.0
21 TraesCS6D01G172900 chrUn 100.000 492 0 0 1862 2353 244767578 244767087 0.000000e+00 909.0
22 TraesCS6D01G172900 chrUn 85.784 823 97 8 5175 5979 244767455 244766635 0.000000e+00 854.0
23 TraesCS6D01G172900 chrUn 85.697 825 95 11 5175 5979 244756710 244755889 0.000000e+00 848.0
24 TraesCS6D01G172900 chrUn 90.441 136 13 0 2758 2893 244764395 244764260 5.240000e-41 180.0
25 TraesCS6D01G172900 chr6A 96.159 1640 47 4 721 2352 218799852 218801483 0.000000e+00 2665.0
26 TraesCS6D01G172900 chr6A 91.733 1500 117 7 5084 6579 218813234 218814730 0.000000e+00 2076.0
27 TraesCS6D01G172900 chr6A 93.472 965 60 3 3409 4372 218802285 218803247 0.000000e+00 1430.0
28 TraesCS6D01G172900 chr6A 92.231 399 28 2 2758 3153 218801801 218802199 4.450000e-156 562.0
29 TraesCS6D01G172900 chr6A 87.278 338 42 1 1985 2321 218813325 218813662 1.030000e-102 385.0
30 TraesCS6D01G172900 chr6A 97.710 131 3 0 6449 6579 218906327 218906197 6.640000e-55 226.0
31 TraesCS6D01G172900 chr6A 90.441 136 13 0 2758 2893 218813994 218814129 5.240000e-41 180.0
32 TraesCS6D01G172900 chr6A 100.000 40 0 0 1732 1771 218802241 218802202 2.540000e-09 75.0
33 TraesCS6D01G172900 chr6B 96.203 1633 51 5 721 2353 290213533 290215154 0.000000e+00 2662.0
34 TraesCS6D01G172900 chr6B 87.394 1658 165 23 2758 4384 290226450 290224806 0.000000e+00 1864.0
35 TraesCS6D01G172900 chr6B 84.783 1518 152 21 5084 6579 290224816 290223356 0.000000e+00 1450.0
36 TraesCS6D01G172900 chr6B 95.028 905 30 10 721 1623 290233451 290232560 0.000000e+00 1408.0
37 TraesCS6D01G172900 chr6B 86.736 769 85 6 5175 5926 290214786 290215554 0.000000e+00 839.0
38 TraesCS6D01G172900 chr6B 94.074 405 24 0 1899 2303 290230396 290229992 3.370000e-172 616.0
39 TraesCS6D01G172900 chr6B 89.053 475 46 3 5507 5979 290226788 290226318 9.510000e-163 584.0
40 TraesCS6D01G172900 chr6B 86.721 369 39 1 1985 2353 290224723 290224365 1.030000e-107 401.0
41 TraesCS6D01G172900 chr6B 86.834 319 42 0 5175 5493 290230310 290229992 2.260000e-94 357.0
42 TraesCS6D01G172900 chr6B 94.298 228 12 1 2826 3052 290218631 290218858 1.360000e-91 348.0
43 TraesCS6D01G172900 chr6B 97.351 151 4 0 1752 1902 290230718 290230568 2.350000e-64 257.0
44 TraesCS6D01G172900 chr7D 97.218 719 20 0 2 720 175875888 175876606 0.000000e+00 1218.0
45 TraesCS6D01G172900 chr7D 75.562 356 62 13 6061 6395 547398194 547397843 1.140000e-32 152.0
46 TraesCS6D01G172900 chr3D 95.474 707 28 3 4382 5084 558258061 558258767 0.000000e+00 1125.0
47 TraesCS6D01G172900 chr3D 92.745 703 49 2 4383 5084 388717882 388717181 0.000000e+00 1014.0
48 TraesCS6D01G172900 chr3D 92.603 703 43 4 4383 5084 409129098 409128404 0.000000e+00 1002.0
49 TraesCS6D01G172900 chr3D 91.557 533 42 2 51 580 597843026 597842494 0.000000e+00 732.0
50 TraesCS6D01G172900 chr3D 92.043 465 37 0 51 515 597847118 597847582 0.000000e+00 654.0
51 TraesCS6D01G172900 chr3D 80.693 202 39 0 1399 1600 106315519 106315720 2.460000e-34 158.0
52 TraesCS6D01G172900 chr3D 78.605 215 37 4 5999 6210 609109391 609109183 4.140000e-27 134.0
53 TraesCS6D01G172900 chr3D 85.437 103 15 0 6454 6556 382814500 382814398 2.510000e-19 108.0
54 TraesCS6D01G172900 chr3D 86.000 100 14 0 6454 6553 575464206 575464305 2.510000e-19 108.0
55 TraesCS6D01G172900 chr5D 98.254 630 11 0 94 723 556915707 556915078 0.000000e+00 1103.0
56 TraesCS6D01G172900 chr5D 93.883 703 39 3 4383 5084 475147937 475147238 0.000000e+00 1057.0
57 TraesCS6D01G172900 chr5D 92.624 705 42 5 4383 5084 215014781 215014084 0.000000e+00 1005.0
58 TraesCS6D01G172900 chr5D 91.903 704 52 4 4383 5084 364827514 364828214 0.000000e+00 979.0
59 TraesCS6D01G172900 chr5D 91.948 534 38 2 51 580 466452524 466451992 0.000000e+00 743.0
60 TraesCS6D01G172900 chr5D 84.516 155 21 3 6426 6579 123768727 123768879 4.110000e-32 150.0
61 TraesCS6D01G172900 chr5D 90.291 103 8 2 622 724 466451902 466451802 4.140000e-27 134.0
62 TraesCS6D01G172900 chr7A 96.125 671 23 3 51 720 273314 273982 0.000000e+00 1092.0
63 TraesCS6D01G172900 chr7A 93.226 561 36 2 51 609 732561707 732562267 0.000000e+00 824.0
64 TraesCS6D01G172900 chr7A 100.000 46 0 0 2 47 273242 273287 1.180000e-12 86.1
65 TraesCS6D01G172900 chr2D 92.308 533 38 2 51 580 602644424 602643892 0.000000e+00 754.0
66 TraesCS6D01G172900 chr2D 88.889 99 10 1 622 720 602643803 602643706 3.220000e-23 121.0
67 TraesCS6D01G172900 chr2D 80.374 107 17 4 620 723 2097121 2097226 1.970000e-10 78.7
68 TraesCS6D01G172900 chr2B 91.541 532 43 1 51 580 789040689 789041220 0.000000e+00 732.0
69 TraesCS6D01G172900 chr2B 91.000 100 8 1 622 721 789041355 789041453 4.140000e-27 134.0
70 TraesCS6D01G172900 chr2B 77.778 216 35 10 5978 6190 39738828 39738623 3.220000e-23 121.0
71 TraesCS6D01G172900 chr2B 98.000 50 1 0 2 51 789025472 789025521 3.270000e-13 87.9
72 TraesCS6D01G172900 chr1D 93.407 455 30 0 51 505 42987665 42988119 0.000000e+00 675.0
73 TraesCS6D01G172900 chr1D 84.279 229 24 9 6183 6403 69178573 69178349 5.170000e-51 213.0
74 TraesCS6D01G172900 chr3B 78.924 446 66 22 5979 6408 826901901 826901468 1.810000e-70 278.0
75 TraesCS6D01G172900 chr3B 77.358 159 24 5 6121 6278 66678368 66678221 4.230000e-12 84.2
76 TraesCS6D01G172900 chr4A 77.902 448 71 18 5979 6408 624993588 624994025 3.040000e-63 254.0
77 TraesCS6D01G172900 chr5B 78.161 261 42 8 6064 6322 667513490 667513737 1.140000e-32 152.0
78 TraesCS6D01G172900 chr4D 85.437 103 15 0 6454 6556 484198958 484198856 2.510000e-19 108.0
79 TraesCS6D01G172900 chr1A 77.500 200 26 10 6183 6381 68373398 68373217 1.170000e-17 102.0
80 TraesCS6D01G172900 chr1B 84.000 100 12 2 623 722 547248600 547248695 7.020000e-15 93.5
81 TraesCS6D01G172900 chr5A 81.373 102 11 5 5982 6082 288914121 288914027 7.070000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G172900 chr6D 159786916 159793494 6578 True 3858.000000 7059 96.323667 1 6579 3 chr6D.!!$R4 6578
1 TraesCS6D01G172900 chr6D 100717289 100717989 700 True 1223.000000 1223 98.148000 4384 5084 1 chr6D.!!$R1 700
2 TraesCS6D01G172900 chr6D 189434343 189435045 702 True 1205.000000 1205 97.589000 4383 5085 1 chr6D.!!$R3 702
3 TraesCS6D01G172900 chr6D 159714178 159717947 3769 False 1120.500000 2787 92.578333 721 5979 6 chr6D.!!$F3 5258
4 TraesCS6D01G172900 chr6D 304211347 304212054 707 False 1014.000000 1014 92.535000 4376 5084 1 chr6D.!!$F2 708
5 TraesCS6D01G172900 chr6D 159779760 159780982 1222 False 972.000000 1783 91.909000 2758 6579 2 chr6D.!!$F4 3821
6 TraesCS6D01G172900 chrUn 244764180 244767578 3398 True 1308.800000 2905 94.634400 1862 6059 5 chrUn.!!$R2 4197
7 TraesCS6D01G172900 chrUn 244755186 244758463 3277 True 1063.750000 1550 96.328000 721 5979 4 chrUn.!!$R1 5258
8 TraesCS6D01G172900 chr6A 218799852 218803247 3395 False 1552.333333 2665 93.954000 721 4372 3 chr6A.!!$F1 3651
9 TraesCS6D01G172900 chr6A 218813234 218814730 1496 False 880.333333 2076 89.817333 1985 6579 3 chr6A.!!$F2 4594
10 TraesCS6D01G172900 chr6B 290213533 290218858 5325 False 1283.000000 2662 92.412333 721 5926 3 chr6B.!!$F1 5205
11 TraesCS6D01G172900 chr6B 290223356 290233451 10095 True 867.125000 1864 90.154750 721 6579 8 chr6B.!!$R1 5858
12 TraesCS6D01G172900 chr7D 175875888 175876606 718 False 1218.000000 1218 97.218000 2 720 1 chr7D.!!$F1 718
13 TraesCS6D01G172900 chr3D 558258061 558258767 706 False 1125.000000 1125 95.474000 4382 5084 1 chr3D.!!$F2 702
14 TraesCS6D01G172900 chr3D 388717181 388717882 701 True 1014.000000 1014 92.745000 4383 5084 1 chr3D.!!$R2 701
15 TraesCS6D01G172900 chr3D 409128404 409129098 694 True 1002.000000 1002 92.603000 4383 5084 1 chr3D.!!$R3 701
16 TraesCS6D01G172900 chr3D 597842494 597843026 532 True 732.000000 732 91.557000 51 580 1 chr3D.!!$R4 529
17 TraesCS6D01G172900 chr5D 556915078 556915707 629 True 1103.000000 1103 98.254000 94 723 1 chr5D.!!$R3 629
18 TraesCS6D01G172900 chr5D 475147238 475147937 699 True 1057.000000 1057 93.883000 4383 5084 1 chr5D.!!$R2 701
19 TraesCS6D01G172900 chr5D 215014084 215014781 697 True 1005.000000 1005 92.624000 4383 5084 1 chr5D.!!$R1 701
20 TraesCS6D01G172900 chr5D 364827514 364828214 700 False 979.000000 979 91.903000 4383 5084 1 chr5D.!!$F2 701
21 TraesCS6D01G172900 chr5D 466451802 466452524 722 True 438.500000 743 91.119500 51 724 2 chr5D.!!$R4 673
22 TraesCS6D01G172900 chr7A 732561707 732562267 560 False 824.000000 824 93.226000 51 609 1 chr7A.!!$F1 558
23 TraesCS6D01G172900 chr7A 273242 273982 740 False 589.050000 1092 98.062500 2 720 2 chr7A.!!$F2 718
24 TraesCS6D01G172900 chr2D 602643706 602644424 718 True 437.500000 754 90.598500 51 720 2 chr2D.!!$R1 669
25 TraesCS6D01G172900 chr2B 789040689 789041453 764 False 433.000000 732 91.270500 51 721 2 chr2B.!!$F2 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 519 0.033405 TTAGGAGTGGCGGAGTAGCT 60.033 55.000 0.0 0.0 37.29 3.32 F
620 646 0.038618 GGCCTTGCTTTTACAACGGG 60.039 55.000 0.0 0.0 0.00 5.28 F
621 647 0.671796 GCCTTGCTTTTACAACGGGT 59.328 50.000 0.0 0.0 0.00 5.28 F
622 648 1.601914 GCCTTGCTTTTACAACGGGTG 60.602 52.381 0.0 0.0 0.00 4.61 F
3971 12178 1.605165 TGGCGGGGGAAACATGAAC 60.605 57.895 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1660 2.370189 AGAACAGGTCCTTCCTCTTGTG 59.630 50.000 0.00 0.00 46.24 3.33 R
3831 12038 7.120923 ACGCTATAGTTTTGGAGGATTTCTA 57.879 36.000 0.84 0.00 0.00 2.10 R
3849 12056 3.253677 GGTGCAGATCTAGTGTACGCTAT 59.746 47.826 16.23 4.01 31.82 2.97 R
4258 12479 6.265422 GCTAAAATACCATAGCCATTTCACCT 59.735 38.462 0.00 0.00 38.85 4.00 R
5717 13991 0.041090 GGGAAAATTCTCTGCCCCCA 59.959 55.000 0.00 0.00 32.50 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
387 413 3.893326 TCCTTGATGCAGATTCGAAGA 57.107 42.857 3.35 0.00 0.00 2.87
413 439 0.685097 CCTGAAGAAAGACCCGACCA 59.315 55.000 0.00 0.00 0.00 4.02
414 440 1.279271 CCTGAAGAAAGACCCGACCAT 59.721 52.381 0.00 0.00 0.00 3.55
415 441 2.350522 CTGAAGAAAGACCCGACCATG 58.649 52.381 0.00 0.00 0.00 3.66
416 442 1.697432 TGAAGAAAGACCCGACCATGT 59.303 47.619 0.00 0.00 0.00 3.21
417 443 2.289444 TGAAGAAAGACCCGACCATGTC 60.289 50.000 0.00 0.00 0.00 3.06
418 444 1.645710 AGAAAGACCCGACCATGTCT 58.354 50.000 0.00 0.00 43.47 3.41
419 445 1.276421 AGAAAGACCCGACCATGTCTG 59.724 52.381 0.00 0.00 40.84 3.51
420 446 1.275291 GAAAGACCCGACCATGTCTGA 59.725 52.381 0.00 0.00 40.84 3.27
421 447 1.573108 AAGACCCGACCATGTCTGAT 58.427 50.000 0.00 0.00 40.84 2.90
422 448 0.826715 AGACCCGACCATGTCTGATG 59.173 55.000 0.00 0.00 40.23 3.07
423 449 0.811616 GACCCGACCATGTCTGATGC 60.812 60.000 0.00 0.00 0.00 3.91
424 450 1.221566 CCCGACCATGTCTGATGCA 59.778 57.895 0.00 0.00 0.00 3.96
425 451 0.392863 CCCGACCATGTCTGATGCAA 60.393 55.000 0.00 0.00 0.00 4.08
426 452 0.729116 CCGACCATGTCTGATGCAAC 59.271 55.000 0.00 0.00 0.00 4.17
427 453 0.371301 CGACCATGTCTGATGCAACG 59.629 55.000 0.00 0.00 0.00 4.10
428 454 0.097674 GACCATGTCTGATGCAACGC 59.902 55.000 0.00 0.00 0.00 4.84
429 455 0.321919 ACCATGTCTGATGCAACGCT 60.322 50.000 0.00 0.00 0.00 5.07
430 456 1.066215 ACCATGTCTGATGCAACGCTA 60.066 47.619 0.00 0.00 0.00 4.26
431 457 1.328680 CCATGTCTGATGCAACGCTAC 59.671 52.381 0.00 0.00 0.00 3.58
432 458 1.328680 CATGTCTGATGCAACGCTACC 59.671 52.381 0.00 0.00 0.00 3.18
433 459 0.608130 TGTCTGATGCAACGCTACCT 59.392 50.000 0.00 0.00 0.00 3.08
434 460 1.002366 GTCTGATGCAACGCTACCTG 58.998 55.000 0.00 0.00 0.00 4.00
435 461 0.894835 TCTGATGCAACGCTACCTGA 59.105 50.000 0.00 0.00 0.00 3.86
436 462 1.275010 TCTGATGCAACGCTACCTGAA 59.725 47.619 0.00 0.00 0.00 3.02
437 463 1.394917 CTGATGCAACGCTACCTGAAC 59.605 52.381 0.00 0.00 0.00 3.18
438 464 0.727398 GATGCAACGCTACCTGAACC 59.273 55.000 0.00 0.00 0.00 3.62
439 465 0.036164 ATGCAACGCTACCTGAACCA 59.964 50.000 0.00 0.00 0.00 3.67
440 466 0.036164 TGCAACGCTACCTGAACCAT 59.964 50.000 0.00 0.00 0.00 3.55
441 467 1.276705 TGCAACGCTACCTGAACCATA 59.723 47.619 0.00 0.00 0.00 2.74
442 468 1.933853 GCAACGCTACCTGAACCATAG 59.066 52.381 0.00 0.00 0.00 2.23
443 469 2.677037 GCAACGCTACCTGAACCATAGT 60.677 50.000 0.00 0.00 0.00 2.12
444 470 2.930040 CAACGCTACCTGAACCATAGTG 59.070 50.000 0.00 0.00 33.55 2.74
445 471 2.453521 ACGCTACCTGAACCATAGTGA 58.546 47.619 0.00 0.00 32.08 3.41
446 472 3.031736 ACGCTACCTGAACCATAGTGAT 58.968 45.455 0.00 0.00 32.08 3.06
447 473 3.181475 ACGCTACCTGAACCATAGTGATG 60.181 47.826 0.00 0.00 32.08 3.07
448 474 3.134458 GCTACCTGAACCATAGTGATGC 58.866 50.000 0.00 0.00 0.00 3.91
449 475 2.717639 ACCTGAACCATAGTGATGCC 57.282 50.000 0.00 0.00 0.00 4.40
450 476 2.200081 ACCTGAACCATAGTGATGCCT 58.800 47.619 0.00 0.00 0.00 4.75
451 477 2.578021 ACCTGAACCATAGTGATGCCTT 59.422 45.455 0.00 0.00 0.00 4.35
452 478 3.780294 ACCTGAACCATAGTGATGCCTTA 59.220 43.478 0.00 0.00 0.00 2.69
453 479 4.413520 ACCTGAACCATAGTGATGCCTTAT 59.586 41.667 0.00 0.00 0.00 1.73
454 480 5.606749 ACCTGAACCATAGTGATGCCTTATA 59.393 40.000 0.00 0.00 0.00 0.98
455 481 6.273260 ACCTGAACCATAGTGATGCCTTATAT 59.727 38.462 0.00 0.00 0.00 0.86
456 482 6.596888 CCTGAACCATAGTGATGCCTTATATG 59.403 42.308 0.00 0.00 0.00 1.78
457 483 7.078249 TGAACCATAGTGATGCCTTATATGT 57.922 36.000 0.00 0.00 0.00 2.29
458 484 7.517320 TGAACCATAGTGATGCCTTATATGTT 58.483 34.615 0.00 0.00 0.00 2.71
459 485 7.998383 TGAACCATAGTGATGCCTTATATGTTT 59.002 33.333 0.00 0.00 0.00 2.83
460 486 7.986085 ACCATAGTGATGCCTTATATGTTTC 57.014 36.000 0.00 0.00 0.00 2.78
461 487 6.650807 ACCATAGTGATGCCTTATATGTTTCG 59.349 38.462 0.00 0.00 0.00 3.46
462 488 6.650807 CCATAGTGATGCCTTATATGTTTCGT 59.349 38.462 0.00 0.00 0.00 3.85
463 489 5.991328 AGTGATGCCTTATATGTTTCGTG 57.009 39.130 0.00 0.00 0.00 4.35
464 490 5.428253 AGTGATGCCTTATATGTTTCGTGT 58.572 37.500 0.00 0.00 0.00 4.49
465 491 5.880332 AGTGATGCCTTATATGTTTCGTGTT 59.120 36.000 0.00 0.00 0.00 3.32
466 492 6.374333 AGTGATGCCTTATATGTTTCGTGTTT 59.626 34.615 0.00 0.00 0.00 2.83
467 493 6.687105 GTGATGCCTTATATGTTTCGTGTTTC 59.313 38.462 0.00 0.00 0.00 2.78
468 494 5.554822 TGCCTTATATGTTTCGTGTTTCC 57.445 39.130 0.00 0.00 0.00 3.13
469 495 5.250200 TGCCTTATATGTTTCGTGTTTCCT 58.750 37.500 0.00 0.00 0.00 3.36
470 496 6.408035 TGCCTTATATGTTTCGTGTTTCCTA 58.592 36.000 0.00 0.00 0.00 2.94
471 497 6.879993 TGCCTTATATGTTTCGTGTTTCCTAA 59.120 34.615 0.00 0.00 0.00 2.69
472 498 7.148373 TGCCTTATATGTTTCGTGTTTCCTAAC 60.148 37.037 0.00 0.00 34.75 2.34
473 499 7.677982 GCCTTATATGTTTCGTGTTTCCTAACC 60.678 40.741 0.00 0.00 33.15 2.85
474 500 7.551617 CCTTATATGTTTCGTGTTTCCTAACCT 59.448 37.037 0.00 0.00 33.15 3.50
475 501 8.851541 TTATATGTTTCGTGTTTCCTAACCTT 57.148 30.769 0.00 0.00 33.15 3.50
476 502 9.941325 TTATATGTTTCGTGTTTCCTAACCTTA 57.059 29.630 0.00 0.00 33.15 2.69
477 503 6.796705 ATGTTTCGTGTTTCCTAACCTTAG 57.203 37.500 0.00 0.00 33.15 2.18
487 513 1.481871 CTAACCTTAGGAGTGGCGGA 58.518 55.000 4.77 0.00 0.00 5.54
488 514 1.409427 CTAACCTTAGGAGTGGCGGAG 59.591 57.143 4.77 0.00 0.00 4.63
489 515 0.544595 AACCTTAGGAGTGGCGGAGT 60.545 55.000 4.77 0.00 0.00 3.85
490 516 0.333993 ACCTTAGGAGTGGCGGAGTA 59.666 55.000 4.77 0.00 0.00 2.59
491 517 1.033574 CCTTAGGAGTGGCGGAGTAG 58.966 60.000 0.00 0.00 0.00 2.57
492 518 0.386113 CTTAGGAGTGGCGGAGTAGC 59.614 60.000 0.00 0.00 0.00 3.58
493 519 0.033405 TTAGGAGTGGCGGAGTAGCT 60.033 55.000 0.00 0.00 37.29 3.32
494 520 0.752009 TAGGAGTGGCGGAGTAGCTG 60.752 60.000 0.00 0.00 37.29 4.24
495 521 2.052690 GGAGTGGCGGAGTAGCTGA 61.053 63.158 0.00 0.00 37.29 4.26
496 522 1.435515 GAGTGGCGGAGTAGCTGAG 59.564 63.158 0.00 0.00 37.29 3.35
497 523 1.304547 AGTGGCGGAGTAGCTGAGT 60.305 57.895 0.00 0.00 37.29 3.41
498 524 1.153745 GTGGCGGAGTAGCTGAGTG 60.154 63.158 0.00 0.00 37.29 3.51
499 525 2.351244 TGGCGGAGTAGCTGAGTGG 61.351 63.158 0.00 0.00 37.29 4.00
500 526 2.352032 GGCGGAGTAGCTGAGTGGT 61.352 63.158 0.00 0.00 37.29 4.16
501 527 1.035932 GGCGGAGTAGCTGAGTGGTA 61.036 60.000 0.00 0.00 37.29 3.25
502 528 0.815734 GCGGAGTAGCTGAGTGGTAA 59.184 55.000 0.00 0.00 0.00 2.85
503 529 1.202313 GCGGAGTAGCTGAGTGGTAAG 60.202 57.143 0.00 0.00 0.00 2.34
504 530 2.366533 CGGAGTAGCTGAGTGGTAAGA 58.633 52.381 0.00 0.00 0.00 2.10
505 531 2.753452 CGGAGTAGCTGAGTGGTAAGAA 59.247 50.000 0.00 0.00 0.00 2.52
506 532 3.181495 CGGAGTAGCTGAGTGGTAAGAAG 60.181 52.174 0.00 0.00 0.00 2.85
507 533 3.429684 GGAGTAGCTGAGTGGTAAGAAGC 60.430 52.174 0.00 0.00 0.00 3.86
508 534 2.498078 AGTAGCTGAGTGGTAAGAAGCC 59.502 50.000 0.00 0.00 34.35 4.35
509 535 1.650528 AGCTGAGTGGTAAGAAGCCT 58.349 50.000 0.00 0.00 34.35 4.58
510 536 2.821437 AGCTGAGTGGTAAGAAGCCTA 58.179 47.619 0.00 0.00 34.35 3.93
511 537 3.173965 AGCTGAGTGGTAAGAAGCCTAA 58.826 45.455 0.00 0.00 34.35 2.69
512 538 3.777522 AGCTGAGTGGTAAGAAGCCTAAT 59.222 43.478 0.00 0.00 34.35 1.73
513 539 4.226168 AGCTGAGTGGTAAGAAGCCTAATT 59.774 41.667 0.00 0.00 34.35 1.40
514 540 5.425539 AGCTGAGTGGTAAGAAGCCTAATTA 59.574 40.000 0.00 0.00 34.35 1.40
515 541 6.070194 AGCTGAGTGGTAAGAAGCCTAATTAA 60.070 38.462 0.00 0.00 34.35 1.40
516 542 6.768381 GCTGAGTGGTAAGAAGCCTAATTAAT 59.232 38.462 0.00 0.00 0.00 1.40
517 543 7.283354 GCTGAGTGGTAAGAAGCCTAATTAATT 59.717 37.037 5.89 5.89 0.00 1.40
518 544 8.506168 TGAGTGGTAAGAAGCCTAATTAATTG 57.494 34.615 11.05 1.40 0.00 2.32
519 545 7.556275 TGAGTGGTAAGAAGCCTAATTAATTGG 59.444 37.037 11.05 7.76 0.00 3.16
520 546 7.639378 AGTGGTAAGAAGCCTAATTAATTGGA 58.361 34.615 12.73 0.00 0.00 3.53
521 547 8.282256 AGTGGTAAGAAGCCTAATTAATTGGAT 58.718 33.333 12.73 7.25 0.00 3.41
522 548 8.352942 GTGGTAAGAAGCCTAATTAATTGGATG 58.647 37.037 12.73 0.00 0.00 3.51
523 549 8.278639 TGGTAAGAAGCCTAATTAATTGGATGA 58.721 33.333 12.73 0.00 0.00 2.92
524 550 8.787852 GGTAAGAAGCCTAATTAATTGGATGAG 58.212 37.037 12.73 1.01 0.00 2.90
525 551 7.830099 AAGAAGCCTAATTAATTGGATGAGG 57.170 36.000 12.73 10.64 0.00 3.86
526 552 6.915786 AGAAGCCTAATTAATTGGATGAGGT 58.084 36.000 12.73 0.00 29.05 3.85
527 553 7.357471 AGAAGCCTAATTAATTGGATGAGGTT 58.643 34.615 12.73 7.66 29.05 3.50
528 554 8.502738 AGAAGCCTAATTAATTGGATGAGGTTA 58.497 33.333 12.73 0.00 29.05 2.85
529 555 8.697507 AAGCCTAATTAATTGGATGAGGTTAG 57.302 34.615 12.73 0.00 29.05 2.34
530 556 7.234355 AGCCTAATTAATTGGATGAGGTTAGG 58.766 38.462 12.73 7.39 39.75 2.69
531 557 6.434340 GCCTAATTAATTGGATGAGGTTAGGG 59.566 42.308 12.73 0.00 38.11 3.53
532 558 6.948309 CCTAATTAATTGGATGAGGTTAGGGG 59.052 42.308 12.73 0.00 35.47 4.79
533 559 6.355588 AATTAATTGGATGAGGTTAGGGGT 57.644 37.500 0.00 0.00 0.00 4.95
534 560 5.806955 TTAATTGGATGAGGTTAGGGGTT 57.193 39.130 0.00 0.00 0.00 4.11
535 561 3.953542 ATTGGATGAGGTTAGGGGTTC 57.046 47.619 0.00 0.00 0.00 3.62
536 562 1.200519 TGGATGAGGTTAGGGGTTCG 58.799 55.000 0.00 0.00 0.00 3.95
537 563 1.273381 TGGATGAGGTTAGGGGTTCGA 60.273 52.381 0.00 0.00 0.00 3.71
538 564 2.047830 GGATGAGGTTAGGGGTTCGAT 58.952 52.381 0.00 0.00 0.00 3.59
539 565 2.438392 GGATGAGGTTAGGGGTTCGATT 59.562 50.000 0.00 0.00 0.00 3.34
540 566 3.494573 GGATGAGGTTAGGGGTTCGATTC 60.495 52.174 0.00 0.00 0.00 2.52
541 567 1.835531 TGAGGTTAGGGGTTCGATTCC 59.164 52.381 0.00 0.00 0.00 3.01
542 568 2.117051 GAGGTTAGGGGTTCGATTCCT 58.883 52.381 6.88 6.88 34.85 3.36
543 569 2.504585 GAGGTTAGGGGTTCGATTCCTT 59.495 50.000 6.97 1.53 32.46 3.36
544 570 2.238898 AGGTTAGGGGTTCGATTCCTTG 59.761 50.000 6.97 0.00 32.46 3.61
545 571 2.026542 GGTTAGGGGTTCGATTCCTTGT 60.027 50.000 6.97 0.00 32.46 3.16
546 572 3.007635 GTTAGGGGTTCGATTCCTTGTG 58.992 50.000 6.97 0.00 32.46 3.33
547 573 0.322546 AGGGGTTCGATTCCTTGTGC 60.323 55.000 7.03 0.00 0.00 4.57
548 574 0.608035 GGGGTTCGATTCCTTGTGCA 60.608 55.000 7.03 0.00 0.00 4.57
549 575 1.463674 GGGTTCGATTCCTTGTGCAT 58.536 50.000 0.00 0.00 0.00 3.96
550 576 1.133025 GGGTTCGATTCCTTGTGCATG 59.867 52.381 0.00 0.00 0.00 4.06
551 577 1.468054 GGTTCGATTCCTTGTGCATGC 60.468 52.381 11.82 11.82 0.00 4.06
552 578 1.470098 GTTCGATTCCTTGTGCATGCT 59.530 47.619 20.33 0.00 0.00 3.79
553 579 1.825090 TCGATTCCTTGTGCATGCTT 58.175 45.000 20.33 0.00 0.00 3.91
554 580 2.161855 TCGATTCCTTGTGCATGCTTT 58.838 42.857 20.33 0.00 0.00 3.51
555 581 2.162208 TCGATTCCTTGTGCATGCTTTC 59.838 45.455 20.33 9.94 0.00 2.62
556 582 2.163010 CGATTCCTTGTGCATGCTTTCT 59.837 45.455 20.33 0.00 0.00 2.52
557 583 3.730061 CGATTCCTTGTGCATGCTTTCTC 60.730 47.826 20.33 5.01 0.00 2.87
558 584 2.574006 TCCTTGTGCATGCTTTCTCT 57.426 45.000 20.33 0.00 0.00 3.10
559 585 2.430465 TCCTTGTGCATGCTTTCTCTC 58.570 47.619 20.33 1.59 0.00 3.20
560 586 2.156917 CCTTGTGCATGCTTTCTCTCA 58.843 47.619 20.33 4.11 0.00 3.27
561 587 2.753452 CCTTGTGCATGCTTTCTCTCAT 59.247 45.455 20.33 0.00 0.00 2.90
562 588 3.192844 CCTTGTGCATGCTTTCTCTCATT 59.807 43.478 20.33 0.00 0.00 2.57
563 589 4.321750 CCTTGTGCATGCTTTCTCTCATTT 60.322 41.667 20.33 0.00 0.00 2.32
564 590 4.859304 TGTGCATGCTTTCTCTCATTTT 57.141 36.364 20.33 0.00 0.00 1.82
565 591 4.801891 TGTGCATGCTTTCTCTCATTTTC 58.198 39.130 20.33 0.00 0.00 2.29
566 592 4.521639 TGTGCATGCTTTCTCTCATTTTCT 59.478 37.500 20.33 0.00 0.00 2.52
567 593 5.010314 TGTGCATGCTTTCTCTCATTTTCTT 59.990 36.000 20.33 0.00 0.00 2.52
568 594 6.207221 TGTGCATGCTTTCTCTCATTTTCTTA 59.793 34.615 20.33 0.00 0.00 2.10
569 595 6.746364 GTGCATGCTTTCTCTCATTTTCTTAG 59.254 38.462 20.33 0.00 0.00 2.18
570 596 6.127814 TGCATGCTTTCTCTCATTTTCTTAGG 60.128 38.462 20.33 0.00 0.00 2.69
571 597 6.094603 GCATGCTTTCTCTCATTTTCTTAGGA 59.905 38.462 11.37 0.00 0.00 2.94
572 598 7.201803 GCATGCTTTCTCTCATTTTCTTAGGAT 60.202 37.037 11.37 0.00 0.00 3.24
573 599 8.684520 CATGCTTTCTCTCATTTTCTTAGGATT 58.315 33.333 0.00 0.00 0.00 3.01
574 600 8.641498 TGCTTTCTCTCATTTTCTTAGGATTT 57.359 30.769 0.00 0.00 0.00 2.17
575 601 9.082313 TGCTTTCTCTCATTTTCTTAGGATTTT 57.918 29.630 0.00 0.00 0.00 1.82
576 602 9.920133 GCTTTCTCTCATTTTCTTAGGATTTTT 57.080 29.630 0.00 0.00 0.00 1.94
585 611 8.840867 CATTTTCTTAGGATTTTTATATCGCGC 58.159 33.333 0.00 0.00 0.00 6.86
586 612 7.724305 TTTCTTAGGATTTTTATATCGCGCT 57.276 32.000 5.56 0.00 0.00 5.92
587 613 7.724305 TTCTTAGGATTTTTATATCGCGCTT 57.276 32.000 5.56 0.00 0.00 4.68
588 614 7.724305 TCTTAGGATTTTTATATCGCGCTTT 57.276 32.000 5.56 0.00 0.00 3.51
589 615 8.149973 TCTTAGGATTTTTATATCGCGCTTTT 57.850 30.769 5.56 0.00 0.00 2.27
590 616 9.263538 TCTTAGGATTTTTATATCGCGCTTTTA 57.736 29.630 5.56 0.00 0.00 1.52
591 617 9.872757 CTTAGGATTTTTATATCGCGCTTTTAA 57.127 29.630 5.56 0.00 0.00 1.52
602 628 5.459110 TCGCGCTTTTAAATAGTAAGTGG 57.541 39.130 5.56 0.00 31.74 4.00
603 629 4.026407 CGCGCTTTTAAATAGTAAGTGGC 58.974 43.478 5.56 0.00 31.74 5.01
604 630 4.348656 GCGCTTTTAAATAGTAAGTGGCC 58.651 43.478 0.00 0.00 31.74 5.36
605 631 4.095932 GCGCTTTTAAATAGTAAGTGGCCT 59.904 41.667 3.32 0.00 31.74 5.19
606 632 5.392703 GCGCTTTTAAATAGTAAGTGGCCTT 60.393 40.000 3.32 0.00 31.74 4.35
607 633 6.027749 CGCTTTTAAATAGTAAGTGGCCTTG 58.972 40.000 3.32 0.00 31.89 3.61
608 634 5.805486 GCTTTTAAATAGTAAGTGGCCTTGC 59.195 40.000 3.32 0.00 33.89 4.01
609 635 6.350194 GCTTTTAAATAGTAAGTGGCCTTGCT 60.350 38.462 3.32 1.97 44.53 3.91
610 636 7.533289 TTTTAAATAGTAAGTGGCCTTGCTT 57.467 32.000 3.32 8.62 40.25 3.91
611 637 7.533289 TTTAAATAGTAAGTGGCCTTGCTTT 57.467 32.000 3.32 0.00 40.25 3.51
612 638 7.533289 TTAAATAGTAAGTGGCCTTGCTTTT 57.467 32.000 3.32 6.33 40.25 2.27
613 639 8.638629 TTAAATAGTAAGTGGCCTTGCTTTTA 57.361 30.769 3.32 5.49 40.25 1.52
614 640 6.510879 AATAGTAAGTGGCCTTGCTTTTAC 57.489 37.500 3.32 4.16 40.25 2.01
615 641 3.827722 AGTAAGTGGCCTTGCTTTTACA 58.172 40.909 3.32 0.00 40.25 2.41
616 642 4.211920 AGTAAGTGGCCTTGCTTTTACAA 58.788 39.130 3.32 0.00 40.25 2.41
617 643 3.452755 AAGTGGCCTTGCTTTTACAAC 57.547 42.857 3.32 0.00 0.00 3.32
618 644 1.336755 AGTGGCCTTGCTTTTACAACG 59.663 47.619 3.32 0.00 0.00 4.10
619 645 0.671251 TGGCCTTGCTTTTACAACGG 59.329 50.000 3.32 0.00 0.00 4.44
620 646 0.038618 GGCCTTGCTTTTACAACGGG 60.039 55.000 0.00 0.00 0.00 5.28
621 647 0.671796 GCCTTGCTTTTACAACGGGT 59.328 50.000 0.00 0.00 0.00 5.28
622 648 1.601914 GCCTTGCTTTTACAACGGGTG 60.602 52.381 0.00 0.00 0.00 4.61
623 649 1.679153 CCTTGCTTTTACAACGGGTGT 59.321 47.619 3.29 3.29 44.82 4.16
624 650 2.879646 CCTTGCTTTTACAACGGGTGTA 59.120 45.455 0.80 0.80 41.98 2.90
625 651 3.304190 CCTTGCTTTTACAACGGGTGTAC 60.304 47.826 5.17 0.00 42.56 2.90
626 652 3.196939 TGCTTTTACAACGGGTGTACT 57.803 42.857 5.17 0.00 42.56 2.73
627 653 3.543665 TGCTTTTACAACGGGTGTACTT 58.456 40.909 5.17 0.00 42.56 2.24
628 654 3.946558 TGCTTTTACAACGGGTGTACTTT 59.053 39.130 5.17 0.00 42.56 2.66
629 655 4.035441 TGCTTTTACAACGGGTGTACTTTC 59.965 41.667 5.17 0.00 42.56 2.62
630 656 4.764940 CTTTTACAACGGGTGTACTTTCG 58.235 43.478 5.17 0.00 42.56 3.46
631 657 3.724508 TTACAACGGGTGTACTTTCGA 57.275 42.857 5.17 0.00 42.56 3.71
632 658 2.600470 ACAACGGGTGTACTTTCGAA 57.400 45.000 0.00 0.00 39.29 3.71
633 659 2.903798 ACAACGGGTGTACTTTCGAAA 58.096 42.857 10.71 10.71 39.29 3.46
634 660 3.269178 ACAACGGGTGTACTTTCGAAAA 58.731 40.909 12.41 0.00 39.29 2.29
635 661 3.688673 ACAACGGGTGTACTTTCGAAAAA 59.311 39.130 12.41 0.09 39.29 1.94
636 662 4.201841 ACAACGGGTGTACTTTCGAAAAAG 60.202 41.667 12.41 3.55 39.29 2.27
637 663 2.874086 ACGGGTGTACTTTCGAAAAAGG 59.126 45.455 12.41 3.05 45.15 3.11
638 664 3.132925 CGGGTGTACTTTCGAAAAAGGA 58.867 45.455 12.41 0.00 45.15 3.36
644 670 5.292671 GTACTTTCGAAAAAGGACCATCC 57.707 43.478 12.41 0.00 46.58 3.51
659 685 6.697641 GGACCATCCTACCCTTTATTATGA 57.302 41.667 0.00 0.00 32.53 2.15
660 686 7.086685 GGACCATCCTACCCTTTATTATGAA 57.913 40.000 0.00 0.00 32.53 2.57
661 687 7.523415 GGACCATCCTACCCTTTATTATGAAA 58.477 38.462 0.00 0.00 32.53 2.69
662 688 7.665974 GGACCATCCTACCCTTTATTATGAAAG 59.334 40.741 0.00 0.00 33.59 2.62
681 707 7.253905 TGAAAGGGTATAGGGTAATATCAGC 57.746 40.000 0.00 0.00 0.00 4.26
682 708 6.214819 TGAAAGGGTATAGGGTAATATCAGCC 59.785 42.308 0.00 0.00 36.27 4.85
683 709 5.299824 AGGGTATAGGGTAATATCAGCCA 57.700 43.478 0.00 0.00 38.60 4.75
684 710 5.866346 AGGGTATAGGGTAATATCAGCCAT 58.134 41.667 0.00 0.00 38.60 4.40
685 711 5.905913 AGGGTATAGGGTAATATCAGCCATC 59.094 44.000 0.00 0.00 38.60 3.51
686 712 5.221461 GGGTATAGGGTAATATCAGCCATCG 60.221 48.000 0.00 0.00 38.60 3.84
687 713 5.597182 GGTATAGGGTAATATCAGCCATCGA 59.403 44.000 0.00 0.00 38.60 3.59
688 714 6.267928 GGTATAGGGTAATATCAGCCATCGAT 59.732 42.308 0.00 0.00 38.60 3.59
689 715 4.478206 AGGGTAATATCAGCCATCGATG 57.522 45.455 18.76 18.76 38.60 3.84
690 716 3.840666 AGGGTAATATCAGCCATCGATGT 59.159 43.478 23.27 7.63 38.60 3.06
691 717 3.935203 GGGTAATATCAGCCATCGATGTG 59.065 47.826 23.27 15.93 36.06 3.21
692 718 4.563580 GGGTAATATCAGCCATCGATGTGT 60.564 45.833 23.27 7.74 36.06 3.72
693 719 4.997395 GGTAATATCAGCCATCGATGTGTT 59.003 41.667 23.27 13.24 0.00 3.32
694 720 5.470098 GGTAATATCAGCCATCGATGTGTTT 59.530 40.000 23.27 13.06 0.00 2.83
695 721 6.649141 GGTAATATCAGCCATCGATGTGTTTA 59.351 38.462 23.27 12.28 0.00 2.01
696 722 7.334421 GGTAATATCAGCCATCGATGTGTTTAT 59.666 37.037 23.27 13.66 0.00 1.40
697 723 6.732531 ATATCAGCCATCGATGTGTTTATG 57.267 37.500 23.27 12.09 0.00 1.90
698 724 4.135747 TCAGCCATCGATGTGTTTATGA 57.864 40.909 23.27 13.92 0.00 2.15
699 725 4.122046 TCAGCCATCGATGTGTTTATGAG 58.878 43.478 23.27 6.42 0.00 2.90
700 726 3.249320 CAGCCATCGATGTGTTTATGAGG 59.751 47.826 23.27 5.74 0.00 3.86
701 727 2.549754 GCCATCGATGTGTTTATGAGGG 59.450 50.000 23.27 5.22 33.84 4.30
702 728 3.808728 CCATCGATGTGTTTATGAGGGT 58.191 45.455 23.27 0.00 0.00 4.34
703 729 3.809832 CCATCGATGTGTTTATGAGGGTC 59.190 47.826 23.27 0.00 0.00 4.46
704 730 4.443457 CCATCGATGTGTTTATGAGGGTCT 60.443 45.833 23.27 0.00 0.00 3.85
705 731 5.221441 CCATCGATGTGTTTATGAGGGTCTA 60.221 44.000 23.27 0.00 0.00 2.59
706 732 5.258456 TCGATGTGTTTATGAGGGTCTAC 57.742 43.478 0.00 0.00 0.00 2.59
707 733 4.954202 TCGATGTGTTTATGAGGGTCTACT 59.046 41.667 0.00 0.00 0.00 2.57
708 734 5.043903 CGATGTGTTTATGAGGGTCTACTG 58.956 45.833 0.00 0.00 0.00 2.74
709 735 5.163550 CGATGTGTTTATGAGGGTCTACTGA 60.164 44.000 0.00 0.00 0.00 3.41
710 736 6.620877 ATGTGTTTATGAGGGTCTACTGAA 57.379 37.500 0.00 0.00 0.00 3.02
711 737 6.037786 TGTGTTTATGAGGGTCTACTGAAG 57.962 41.667 0.00 0.00 0.00 3.02
712 738 4.870991 GTGTTTATGAGGGTCTACTGAAGC 59.129 45.833 0.00 0.00 0.00 3.86
713 739 4.530553 TGTTTATGAGGGTCTACTGAAGCA 59.469 41.667 0.00 0.00 0.00 3.91
714 740 5.112686 GTTTATGAGGGTCTACTGAAGCAG 58.887 45.833 0.00 0.00 37.52 4.24
715 741 2.604912 TGAGGGTCTACTGAAGCAGA 57.395 50.000 0.82 0.00 35.18 4.26
716 742 2.889512 TGAGGGTCTACTGAAGCAGAA 58.110 47.619 0.82 0.00 35.18 3.02
717 743 2.828520 TGAGGGTCTACTGAAGCAGAAG 59.171 50.000 0.82 0.00 35.18 2.85
718 744 2.829120 GAGGGTCTACTGAAGCAGAAGT 59.171 50.000 0.82 0.00 35.18 3.01
719 745 2.564947 AGGGTCTACTGAAGCAGAAGTG 59.435 50.000 0.82 0.00 35.18 3.16
1387 1423 2.332654 GGTCACCACCGCATCAACC 61.333 63.158 0.00 0.00 31.06 3.77
1435 1471 3.226429 GAGCAGCTGTGGGTCGACA 62.226 63.158 18.91 0.00 0.00 4.35
1569 1605 4.794439 GGCCCGCAAATCGCCAAC 62.794 66.667 0.00 0.00 42.52 3.77
3849 12056 4.538490 TGGCCTAGAAATCCTCCAAAACTA 59.462 41.667 3.32 0.00 0.00 2.24
3971 12178 1.605165 TGGCGGGGGAAACATGAAC 60.605 57.895 0.00 0.00 0.00 3.18
3972 12179 2.696759 GGCGGGGGAAACATGAACG 61.697 63.158 0.00 0.00 0.00 3.95
4373 12594 1.540435 GCCCAATTTCAAGGCCGGAA 61.540 55.000 5.05 8.60 41.00 4.30
4374 12595 0.972883 CCCAATTTCAAGGCCGGAAA 59.027 50.000 22.42 22.42 38.49 3.13
4375 12596 1.337728 CCCAATTTCAAGGCCGGAAAC 60.338 52.381 22.57 0.00 37.10 2.78
4376 12597 1.618343 CCAATTTCAAGGCCGGAAACT 59.382 47.619 22.57 12.95 37.10 2.66
4377 12598 2.823154 CCAATTTCAAGGCCGGAAACTA 59.177 45.455 22.57 6.64 37.10 2.24
4378 12599 3.119495 CCAATTTCAAGGCCGGAAACTAG 60.119 47.826 22.57 16.07 37.10 2.57
4379 12600 2.194201 TTTCAAGGCCGGAAACTAGG 57.806 50.000 18.14 0.00 29.78 3.02
4380 12601 0.326927 TTCAAGGCCGGAAACTAGGG 59.673 55.000 5.05 0.00 0.00 3.53
5019 13246 5.594199 AGTGGGTGGGTATAGAAAGTTTT 57.406 39.130 0.00 0.00 0.00 2.43
5237 13467 2.286365 AAGCTTTGTTCCCGGATTCA 57.714 45.000 0.73 0.00 0.00 2.57
5299 13529 0.036732 TGCGCATGAAGGAGGTTCTT 59.963 50.000 5.66 0.00 35.99 2.52
5406 13664 1.093159 GTGCTCAAAGCCATCCTCAG 58.907 55.000 0.00 0.00 41.51 3.35
5514 13788 2.166459 CTGGCGAGAACATACTTCTCCA 59.834 50.000 4.82 0.00 41.31 3.86
5527 13801 2.092103 ACTTCTCCAGTCGGCTCTATCT 60.092 50.000 0.00 0.00 0.00 1.98
5568 13842 1.985116 AGAGGGAGAACCAGTCGGC 60.985 63.158 0.00 0.00 43.89 5.54
6098 14451 0.539986 GGCCCCTTCTAACGACATCA 59.460 55.000 0.00 0.00 0.00 3.07
6123 14476 6.485313 ACCTCAACACTTTTGTCGATGAATTA 59.515 34.615 0.00 0.00 33.55 1.40
6167 14520 5.312974 TCCATCTCCATCTCTCTCATACTCT 59.687 44.000 0.00 0.00 0.00 3.24
6422 14778 8.379161 GCTCATATACAAATGTCGATTGAGATC 58.621 37.037 4.32 0.00 0.00 2.75
6424 14780 9.933723 TCATATACAAATGTCGATTGAGATCAT 57.066 29.630 4.32 0.00 32.33 2.45
6436 14792 7.122055 GTCGATTGAGATCATCCCTAGTATTCT 59.878 40.741 0.00 0.00 32.33 2.40
6548 14904 7.985184 TCCATACTTGCGAGTTATGATTAACTT 59.015 33.333 12.97 0.00 46.32 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 247 6.194463 CCACAAATCAAGCTACGACATATTG 58.806 40.000 0.00 0.00 0.00 1.90
387 413 4.102054 TCGGGTCTTTCTTCAGGTAGTTTT 59.898 41.667 0.00 0.00 0.00 2.43
413 439 1.208052 AGGTAGCGTTGCATCAGACAT 59.792 47.619 0.00 0.00 0.00 3.06
414 440 0.608130 AGGTAGCGTTGCATCAGACA 59.392 50.000 0.00 0.00 0.00 3.41
415 441 1.002366 CAGGTAGCGTTGCATCAGAC 58.998 55.000 0.00 0.00 0.00 3.51
416 442 0.894835 TCAGGTAGCGTTGCATCAGA 59.105 50.000 0.00 0.00 0.00 3.27
417 443 1.394917 GTTCAGGTAGCGTTGCATCAG 59.605 52.381 0.00 0.00 0.00 2.90
418 444 1.438651 GTTCAGGTAGCGTTGCATCA 58.561 50.000 0.00 0.00 0.00 3.07
419 445 0.727398 GGTTCAGGTAGCGTTGCATC 59.273 55.000 0.00 0.00 0.00 3.91
420 446 0.036164 TGGTTCAGGTAGCGTTGCAT 59.964 50.000 0.00 0.00 0.00 3.96
421 447 0.036164 ATGGTTCAGGTAGCGTTGCA 59.964 50.000 0.00 0.00 0.00 4.08
422 448 1.933853 CTATGGTTCAGGTAGCGTTGC 59.066 52.381 0.00 0.00 0.00 4.17
423 449 2.930040 CACTATGGTTCAGGTAGCGTTG 59.070 50.000 0.00 0.00 0.00 4.10
424 450 2.829720 TCACTATGGTTCAGGTAGCGTT 59.170 45.455 0.00 0.00 0.00 4.84
425 451 2.453521 TCACTATGGTTCAGGTAGCGT 58.546 47.619 0.00 0.00 0.00 5.07
426 452 3.384668 CATCACTATGGTTCAGGTAGCG 58.615 50.000 0.00 0.00 0.00 4.26
427 453 3.134458 GCATCACTATGGTTCAGGTAGC 58.866 50.000 0.00 0.00 33.38 3.58
428 454 3.389329 AGGCATCACTATGGTTCAGGTAG 59.611 47.826 0.00 0.00 33.38 3.18
429 455 3.384168 AGGCATCACTATGGTTCAGGTA 58.616 45.455 0.00 0.00 33.38 3.08
430 456 2.200081 AGGCATCACTATGGTTCAGGT 58.800 47.619 0.00 0.00 33.38 4.00
431 457 3.287867 AAGGCATCACTATGGTTCAGG 57.712 47.619 0.00 0.00 33.38 3.86
432 458 7.164122 ACATATAAGGCATCACTATGGTTCAG 58.836 38.462 0.00 0.00 33.38 3.02
433 459 7.078249 ACATATAAGGCATCACTATGGTTCA 57.922 36.000 0.00 0.00 33.38 3.18
434 460 7.986085 AACATATAAGGCATCACTATGGTTC 57.014 36.000 0.00 0.00 33.38 3.62
435 461 7.173218 CGAAACATATAAGGCATCACTATGGTT 59.827 37.037 0.00 0.00 33.58 3.67
436 462 6.650807 CGAAACATATAAGGCATCACTATGGT 59.349 38.462 0.00 0.00 33.38 3.55
437 463 6.650807 ACGAAACATATAAGGCATCACTATGG 59.349 38.462 0.00 0.00 33.38 2.74
438 464 7.171508 ACACGAAACATATAAGGCATCACTATG 59.828 37.037 0.00 0.00 36.09 2.23
439 465 7.217200 ACACGAAACATATAAGGCATCACTAT 58.783 34.615 0.00 0.00 0.00 2.12
440 466 6.578944 ACACGAAACATATAAGGCATCACTA 58.421 36.000 0.00 0.00 0.00 2.74
441 467 5.428253 ACACGAAACATATAAGGCATCACT 58.572 37.500 0.00 0.00 0.00 3.41
442 468 5.734855 ACACGAAACATATAAGGCATCAC 57.265 39.130 0.00 0.00 0.00 3.06
443 469 6.183360 GGAAACACGAAACATATAAGGCATCA 60.183 38.462 0.00 0.00 0.00 3.07
444 470 6.038271 AGGAAACACGAAACATATAAGGCATC 59.962 38.462 0.00 0.00 0.00 3.91
445 471 5.885912 AGGAAACACGAAACATATAAGGCAT 59.114 36.000 0.00 0.00 0.00 4.40
446 472 5.250200 AGGAAACACGAAACATATAAGGCA 58.750 37.500 0.00 0.00 0.00 4.75
447 473 5.813080 AGGAAACACGAAACATATAAGGC 57.187 39.130 0.00 0.00 0.00 4.35
448 474 7.551617 AGGTTAGGAAACACGAAACATATAAGG 59.448 37.037 0.00 0.00 37.34 2.69
449 475 8.488651 AGGTTAGGAAACACGAAACATATAAG 57.511 34.615 0.00 0.00 37.34 1.73
450 476 8.851541 AAGGTTAGGAAACACGAAACATATAA 57.148 30.769 0.00 0.00 37.34 0.98
451 477 9.590451 CTAAGGTTAGGAAACACGAAACATATA 57.410 33.333 0.00 0.00 37.34 0.86
452 478 8.488651 CTAAGGTTAGGAAACACGAAACATAT 57.511 34.615 0.00 0.00 37.34 1.78
453 479 7.894376 CTAAGGTTAGGAAACACGAAACATA 57.106 36.000 0.00 0.00 37.34 2.29
454 480 6.796705 CTAAGGTTAGGAAACACGAAACAT 57.203 37.500 0.00 0.00 37.34 2.71
468 494 1.409427 CTCCGCCACTCCTAAGGTTAG 59.591 57.143 0.00 0.00 0.00 2.34
469 495 1.272872 ACTCCGCCACTCCTAAGGTTA 60.273 52.381 0.00 0.00 0.00 2.85
470 496 0.544595 ACTCCGCCACTCCTAAGGTT 60.545 55.000 0.00 0.00 0.00 3.50
471 497 0.333993 TACTCCGCCACTCCTAAGGT 59.666 55.000 0.00 0.00 0.00 3.50
472 498 1.033574 CTACTCCGCCACTCCTAAGG 58.966 60.000 0.00 0.00 0.00 2.69
473 499 0.386113 GCTACTCCGCCACTCCTAAG 59.614 60.000 0.00 0.00 0.00 2.18
474 500 0.033405 AGCTACTCCGCCACTCCTAA 60.033 55.000 0.00 0.00 0.00 2.69
475 501 0.752009 CAGCTACTCCGCCACTCCTA 60.752 60.000 0.00 0.00 0.00 2.94
476 502 2.055042 CAGCTACTCCGCCACTCCT 61.055 63.158 0.00 0.00 0.00 3.69
477 503 2.010582 CTCAGCTACTCCGCCACTCC 62.011 65.000 0.00 0.00 0.00 3.85
478 504 1.316706 ACTCAGCTACTCCGCCACTC 61.317 60.000 0.00 0.00 0.00 3.51
479 505 1.304547 ACTCAGCTACTCCGCCACT 60.305 57.895 0.00 0.00 0.00 4.00
480 506 1.153745 CACTCAGCTACTCCGCCAC 60.154 63.158 0.00 0.00 0.00 5.01
481 507 2.351244 CCACTCAGCTACTCCGCCA 61.351 63.158 0.00 0.00 0.00 5.69
482 508 1.035932 TACCACTCAGCTACTCCGCC 61.036 60.000 0.00 0.00 0.00 6.13
483 509 0.815734 TTACCACTCAGCTACTCCGC 59.184 55.000 0.00 0.00 0.00 5.54
484 510 2.366533 TCTTACCACTCAGCTACTCCG 58.633 52.381 0.00 0.00 0.00 4.63
485 511 3.429684 GCTTCTTACCACTCAGCTACTCC 60.430 52.174 0.00 0.00 0.00 3.85
486 512 3.429684 GGCTTCTTACCACTCAGCTACTC 60.430 52.174 0.00 0.00 0.00 2.59
487 513 2.498078 GGCTTCTTACCACTCAGCTACT 59.502 50.000 0.00 0.00 0.00 2.57
488 514 2.498078 AGGCTTCTTACCACTCAGCTAC 59.502 50.000 0.00 0.00 0.00 3.58
489 515 2.821437 AGGCTTCTTACCACTCAGCTA 58.179 47.619 0.00 0.00 0.00 3.32
490 516 1.650528 AGGCTTCTTACCACTCAGCT 58.349 50.000 0.00 0.00 0.00 4.24
491 517 3.611766 TTAGGCTTCTTACCACTCAGC 57.388 47.619 0.00 0.00 0.00 4.26
492 518 8.616076 CAATTAATTAGGCTTCTTACCACTCAG 58.384 37.037 0.00 0.00 0.00 3.35
493 519 7.556275 CCAATTAATTAGGCTTCTTACCACTCA 59.444 37.037 0.00 0.00 0.00 3.41
494 520 7.773690 TCCAATTAATTAGGCTTCTTACCACTC 59.226 37.037 0.00 0.00 0.00 3.51
495 521 7.639378 TCCAATTAATTAGGCTTCTTACCACT 58.361 34.615 0.00 0.00 0.00 4.00
496 522 7.875327 TCCAATTAATTAGGCTTCTTACCAC 57.125 36.000 0.00 0.00 0.00 4.16
497 523 8.278639 TCATCCAATTAATTAGGCTTCTTACCA 58.721 33.333 0.00 0.00 0.00 3.25
498 524 8.691661 TCATCCAATTAATTAGGCTTCTTACC 57.308 34.615 0.00 0.00 0.00 2.85
499 525 8.787852 CCTCATCCAATTAATTAGGCTTCTTAC 58.212 37.037 0.00 0.00 0.00 2.34
500 526 8.502738 ACCTCATCCAATTAATTAGGCTTCTTA 58.497 33.333 12.11 0.00 0.00 2.10
501 527 7.357471 ACCTCATCCAATTAATTAGGCTTCTT 58.643 34.615 12.11 0.00 0.00 2.52
502 528 6.915786 ACCTCATCCAATTAATTAGGCTTCT 58.084 36.000 12.11 0.00 0.00 2.85
503 529 7.588497 AACCTCATCCAATTAATTAGGCTTC 57.412 36.000 12.11 0.00 0.00 3.86
504 530 7.725844 CCTAACCTCATCCAATTAATTAGGCTT 59.274 37.037 12.11 9.08 33.17 4.35
505 531 7.234355 CCTAACCTCATCCAATTAATTAGGCT 58.766 38.462 12.11 4.97 33.17 4.58
506 532 6.434340 CCCTAACCTCATCCAATTAATTAGGC 59.566 42.308 12.11 0.00 37.28 3.93
507 533 6.948309 CCCCTAACCTCATCCAATTAATTAGG 59.052 42.308 11.01 11.01 38.00 2.69
508 534 7.526918 ACCCCTAACCTCATCCAATTAATTAG 58.473 38.462 0.00 0.00 0.00 1.73
509 535 7.474474 ACCCCTAACCTCATCCAATTAATTA 57.526 36.000 0.00 0.00 0.00 1.40
510 536 6.355588 ACCCCTAACCTCATCCAATTAATT 57.644 37.500 0.00 0.00 0.00 1.40
511 537 6.355588 AACCCCTAACCTCATCCAATTAAT 57.644 37.500 0.00 0.00 0.00 1.40
512 538 5.630539 CGAACCCCTAACCTCATCCAATTAA 60.631 44.000 0.00 0.00 0.00 1.40
513 539 4.141574 CGAACCCCTAACCTCATCCAATTA 60.142 45.833 0.00 0.00 0.00 1.40
514 540 3.371595 CGAACCCCTAACCTCATCCAATT 60.372 47.826 0.00 0.00 0.00 2.32
515 541 2.172717 CGAACCCCTAACCTCATCCAAT 59.827 50.000 0.00 0.00 0.00 3.16
516 542 1.557832 CGAACCCCTAACCTCATCCAA 59.442 52.381 0.00 0.00 0.00 3.53
517 543 1.200519 CGAACCCCTAACCTCATCCA 58.799 55.000 0.00 0.00 0.00 3.41
518 544 1.492764 TCGAACCCCTAACCTCATCC 58.507 55.000 0.00 0.00 0.00 3.51
519 545 3.494573 GGAATCGAACCCCTAACCTCATC 60.495 52.174 0.00 0.00 0.00 2.92
520 546 2.438392 GGAATCGAACCCCTAACCTCAT 59.562 50.000 0.00 0.00 0.00 2.90
521 547 1.835531 GGAATCGAACCCCTAACCTCA 59.164 52.381 0.00 0.00 0.00 3.86
522 548 2.117051 AGGAATCGAACCCCTAACCTC 58.883 52.381 8.14 0.00 0.00 3.85
523 549 2.238898 CAAGGAATCGAACCCCTAACCT 59.761 50.000 8.14 0.00 0.00 3.50
524 550 2.026542 ACAAGGAATCGAACCCCTAACC 60.027 50.000 8.14 0.00 0.00 2.85
525 551 3.007635 CACAAGGAATCGAACCCCTAAC 58.992 50.000 8.14 0.00 0.00 2.34
526 552 2.617021 GCACAAGGAATCGAACCCCTAA 60.617 50.000 8.14 0.00 0.00 2.69
527 553 1.065709 GCACAAGGAATCGAACCCCTA 60.066 52.381 8.14 0.00 0.00 3.53
528 554 0.322546 GCACAAGGAATCGAACCCCT 60.323 55.000 8.14 3.50 0.00 4.79
529 555 0.608035 TGCACAAGGAATCGAACCCC 60.608 55.000 8.14 1.29 0.00 4.95
530 556 1.133025 CATGCACAAGGAATCGAACCC 59.867 52.381 8.14 3.67 0.00 4.11
531 557 1.468054 GCATGCACAAGGAATCGAACC 60.468 52.381 14.21 0.00 0.00 3.62
532 558 1.470098 AGCATGCACAAGGAATCGAAC 59.530 47.619 21.98 0.00 0.00 3.95
533 559 1.825090 AGCATGCACAAGGAATCGAA 58.175 45.000 21.98 0.00 0.00 3.71
534 560 1.825090 AAGCATGCACAAGGAATCGA 58.175 45.000 21.98 0.00 0.00 3.59
535 561 2.163010 AGAAAGCATGCACAAGGAATCG 59.837 45.455 21.98 0.00 0.00 3.34
536 562 3.442977 AGAGAAAGCATGCACAAGGAATC 59.557 43.478 21.98 6.56 0.00 2.52
537 563 3.428532 AGAGAAAGCATGCACAAGGAAT 58.571 40.909 21.98 0.00 0.00 3.01
538 564 2.816087 GAGAGAAAGCATGCACAAGGAA 59.184 45.455 21.98 0.00 0.00 3.36
539 565 2.224597 TGAGAGAAAGCATGCACAAGGA 60.225 45.455 21.98 0.00 0.00 3.36
540 566 2.156917 TGAGAGAAAGCATGCACAAGG 58.843 47.619 21.98 0.00 0.00 3.61
541 567 4.436242 AATGAGAGAAAGCATGCACAAG 57.564 40.909 21.98 0.00 0.00 3.16
542 568 4.859304 AAATGAGAGAAAGCATGCACAA 57.141 36.364 21.98 0.00 0.00 3.33
543 569 4.521639 AGAAAATGAGAGAAAGCATGCACA 59.478 37.500 21.98 8.21 0.00 4.57
544 570 5.056894 AGAAAATGAGAGAAAGCATGCAC 57.943 39.130 21.98 10.82 0.00 4.57
545 571 5.717078 AAGAAAATGAGAGAAAGCATGCA 57.283 34.783 21.98 0.00 0.00 3.96
546 572 6.094603 TCCTAAGAAAATGAGAGAAAGCATGC 59.905 38.462 10.51 10.51 0.00 4.06
547 573 7.621428 TCCTAAGAAAATGAGAGAAAGCATG 57.379 36.000 0.00 0.00 0.00 4.06
548 574 8.820153 AATCCTAAGAAAATGAGAGAAAGCAT 57.180 30.769 0.00 0.00 0.00 3.79
549 575 8.641498 AAATCCTAAGAAAATGAGAGAAAGCA 57.359 30.769 0.00 0.00 0.00 3.91
550 576 9.920133 AAAAATCCTAAGAAAATGAGAGAAAGC 57.080 29.630 0.00 0.00 0.00 3.51
559 585 8.840867 GCGCGATATAAAAATCCTAAGAAAATG 58.159 33.333 12.10 0.00 0.00 2.32
560 586 8.784043 AGCGCGATATAAAAATCCTAAGAAAAT 58.216 29.630 12.10 0.00 0.00 1.82
561 587 8.149973 AGCGCGATATAAAAATCCTAAGAAAA 57.850 30.769 12.10 0.00 0.00 2.29
562 588 7.724305 AGCGCGATATAAAAATCCTAAGAAA 57.276 32.000 12.10 0.00 0.00 2.52
563 589 7.724305 AAGCGCGATATAAAAATCCTAAGAA 57.276 32.000 12.10 0.00 0.00 2.52
564 590 7.724305 AAAGCGCGATATAAAAATCCTAAGA 57.276 32.000 12.10 0.00 0.00 2.10
565 591 9.872757 TTAAAAGCGCGATATAAAAATCCTAAG 57.127 29.630 12.10 0.00 0.00 2.18
576 602 8.918658 CCACTTACTATTTAAAAGCGCGATATA 58.081 33.333 12.10 0.00 0.00 0.86
577 603 7.570691 GCCACTTACTATTTAAAAGCGCGATAT 60.571 37.037 12.10 0.00 0.00 1.63
578 604 6.292488 GCCACTTACTATTTAAAAGCGCGATA 60.292 38.462 12.10 0.00 0.00 2.92
579 605 5.503520 GCCACTTACTATTTAAAAGCGCGAT 60.504 40.000 12.10 0.00 0.00 4.58
580 606 4.201744 GCCACTTACTATTTAAAAGCGCGA 60.202 41.667 12.10 0.00 0.00 5.87
581 607 4.026407 GCCACTTACTATTTAAAAGCGCG 58.974 43.478 0.00 0.00 0.00 6.86
582 608 4.095932 AGGCCACTTACTATTTAAAAGCGC 59.904 41.667 5.01 0.00 0.00 5.92
583 609 5.813080 AGGCCACTTACTATTTAAAAGCG 57.187 39.130 5.01 0.00 0.00 4.68
584 610 5.805486 GCAAGGCCACTTACTATTTAAAAGC 59.195 40.000 5.01 0.00 34.49 3.51
585 611 7.158099 AGCAAGGCCACTTACTATTTAAAAG 57.842 36.000 5.01 0.00 34.49 2.27
586 612 7.533289 AAGCAAGGCCACTTACTATTTAAAA 57.467 32.000 5.01 0.00 34.49 1.52
587 613 7.533289 AAAGCAAGGCCACTTACTATTTAAA 57.467 32.000 5.01 0.00 34.49 1.52
588 614 7.533289 AAAAGCAAGGCCACTTACTATTTAA 57.467 32.000 5.01 0.00 34.49 1.52
589 615 7.666388 TGTAAAAGCAAGGCCACTTACTATTTA 59.334 33.333 5.01 0.00 34.49 1.40
590 616 6.492087 TGTAAAAGCAAGGCCACTTACTATTT 59.508 34.615 5.01 0.00 34.49 1.40
591 617 6.007703 TGTAAAAGCAAGGCCACTTACTATT 58.992 36.000 5.01 0.00 34.49 1.73
592 618 5.566469 TGTAAAAGCAAGGCCACTTACTAT 58.434 37.500 5.01 0.00 34.49 2.12
593 619 4.975631 TGTAAAAGCAAGGCCACTTACTA 58.024 39.130 5.01 0.00 34.49 1.82
594 620 3.827722 TGTAAAAGCAAGGCCACTTACT 58.172 40.909 5.01 0.00 34.49 2.24
595 621 4.295870 GTTGTAAAAGCAAGGCCACTTAC 58.704 43.478 5.01 2.48 34.49 2.34
596 622 3.003897 CGTTGTAAAAGCAAGGCCACTTA 59.996 43.478 5.01 0.00 34.49 2.24
597 623 2.223711 CGTTGTAAAAGCAAGGCCACTT 60.224 45.455 5.01 2.08 37.43 3.16
598 624 1.336755 CGTTGTAAAAGCAAGGCCACT 59.663 47.619 5.01 0.00 0.00 4.00
599 625 1.601914 CCGTTGTAAAAGCAAGGCCAC 60.602 52.381 5.01 0.00 34.16 5.01
600 626 0.671251 CCGTTGTAAAAGCAAGGCCA 59.329 50.000 5.01 0.00 34.16 5.36
601 627 0.038618 CCCGTTGTAAAAGCAAGGCC 60.039 55.000 0.00 0.00 34.16 5.19
602 628 0.671796 ACCCGTTGTAAAAGCAAGGC 59.328 50.000 0.00 0.00 34.16 4.35
603 629 1.679153 ACACCCGTTGTAAAAGCAAGG 59.321 47.619 0.00 0.00 36.32 3.61
604 630 3.562557 AGTACACCCGTTGTAAAAGCAAG 59.437 43.478 0.00 0.00 42.56 4.01
605 631 3.543665 AGTACACCCGTTGTAAAAGCAA 58.456 40.909 0.00 0.00 42.56 3.91
606 632 3.196939 AGTACACCCGTTGTAAAAGCA 57.803 42.857 0.00 0.00 42.56 3.91
607 633 4.530388 GAAAGTACACCCGTTGTAAAAGC 58.470 43.478 0.00 0.00 42.56 3.51
608 634 4.507388 TCGAAAGTACACCCGTTGTAAAAG 59.493 41.667 0.00 0.00 42.56 2.27
609 635 4.437239 TCGAAAGTACACCCGTTGTAAAA 58.563 39.130 0.00 0.00 42.56 1.52
610 636 4.052159 TCGAAAGTACACCCGTTGTAAA 57.948 40.909 0.00 0.00 42.56 2.01
611 637 3.724508 TCGAAAGTACACCCGTTGTAA 57.275 42.857 0.00 0.00 42.56 2.41
612 638 3.724508 TTCGAAAGTACACCCGTTGTA 57.275 42.857 0.00 0.00 39.91 2.41
613 639 2.600470 TTCGAAAGTACACCCGTTGT 57.400 45.000 0.00 0.00 42.84 3.32
614 640 3.948196 TTTTCGAAAGTACACCCGTTG 57.052 42.857 10.98 0.00 0.00 4.10
615 641 3.313249 CCTTTTTCGAAAGTACACCCGTT 59.687 43.478 10.98 0.00 0.00 4.44
616 642 2.874086 CCTTTTTCGAAAGTACACCCGT 59.126 45.455 10.98 0.00 0.00 5.28
617 643 3.059393 GTCCTTTTTCGAAAGTACACCCG 60.059 47.826 10.98 0.00 0.00 5.28
618 644 3.251729 GGTCCTTTTTCGAAAGTACACCC 59.748 47.826 10.98 4.98 0.00 4.61
619 645 3.878699 TGGTCCTTTTTCGAAAGTACACC 59.121 43.478 10.98 15.22 0.00 4.16
620 646 5.334646 GGATGGTCCTTTTTCGAAAGTACAC 60.335 44.000 10.98 7.06 32.53 2.90
621 647 4.758165 GGATGGTCCTTTTTCGAAAGTACA 59.242 41.667 10.98 6.49 32.53 2.90
622 648 5.001874 AGGATGGTCCTTTTTCGAAAGTAC 58.998 41.667 10.98 7.84 46.91 2.73
623 649 5.237236 AGGATGGTCCTTTTTCGAAAGTA 57.763 39.130 10.98 2.86 46.91 2.24
624 650 4.100279 AGGATGGTCCTTTTTCGAAAGT 57.900 40.909 10.98 0.00 46.91 2.66
625 651 4.395231 GGTAGGATGGTCCTTTTTCGAAAG 59.605 45.833 10.98 0.00 46.91 2.62
626 652 4.329392 GGTAGGATGGTCCTTTTTCGAAA 58.671 43.478 6.47 6.47 46.91 3.46
627 653 3.307904 GGGTAGGATGGTCCTTTTTCGAA 60.308 47.826 3.49 0.00 46.91 3.71
628 654 2.237893 GGGTAGGATGGTCCTTTTTCGA 59.762 50.000 3.49 0.00 46.91 3.71
629 655 2.238898 AGGGTAGGATGGTCCTTTTTCG 59.761 50.000 3.49 0.00 46.91 3.46
630 656 4.317530 AAGGGTAGGATGGTCCTTTTTC 57.682 45.455 3.49 0.00 46.91 2.29
631 657 4.759793 AAAGGGTAGGATGGTCCTTTTT 57.240 40.909 3.49 0.00 46.91 1.94
632 658 6.417503 AATAAAGGGTAGGATGGTCCTTTT 57.582 37.500 10.82 1.80 46.91 2.27
633 659 7.352522 TCATAATAAAGGGTAGGATGGTCCTTT 59.647 37.037 3.49 10.46 46.91 3.11
634 660 6.855061 TCATAATAAAGGGTAGGATGGTCCTT 59.145 38.462 3.49 0.00 46.91 3.36
636 662 6.697641 TCATAATAAAGGGTAGGATGGTCC 57.302 41.667 0.00 0.00 36.58 4.46
637 663 8.622948 CTTTCATAATAAAGGGTAGGATGGTC 57.377 38.462 0.00 0.00 33.64 4.02
655 681 8.989131 GCTGATATTACCCTATACCCTTTCATA 58.011 37.037 0.00 0.00 0.00 2.15
656 682 7.092399 GGCTGATATTACCCTATACCCTTTCAT 60.092 40.741 0.00 0.00 0.00 2.57
657 683 6.214819 GGCTGATATTACCCTATACCCTTTCA 59.785 42.308 0.00 0.00 0.00 2.69
658 684 6.214819 TGGCTGATATTACCCTATACCCTTTC 59.785 42.308 0.00 0.00 0.00 2.62
659 685 6.095680 TGGCTGATATTACCCTATACCCTTT 58.904 40.000 0.00 0.00 0.00 3.11
660 686 5.671941 TGGCTGATATTACCCTATACCCTT 58.328 41.667 0.00 0.00 0.00 3.95
661 687 5.299824 TGGCTGATATTACCCTATACCCT 57.700 43.478 0.00 0.00 0.00 4.34
662 688 5.221461 CGATGGCTGATATTACCCTATACCC 60.221 48.000 0.00 0.00 0.00 3.69
663 689 5.597182 TCGATGGCTGATATTACCCTATACC 59.403 44.000 0.00 0.00 0.00 2.73
664 690 6.710597 TCGATGGCTGATATTACCCTATAC 57.289 41.667 0.00 0.00 0.00 1.47
665 691 6.839134 ACATCGATGGCTGATATTACCCTATA 59.161 38.462 28.09 0.00 0.00 1.31
666 692 5.663106 ACATCGATGGCTGATATTACCCTAT 59.337 40.000 28.09 0.00 0.00 2.57
667 693 5.023452 ACATCGATGGCTGATATTACCCTA 58.977 41.667 28.09 0.00 0.00 3.53
668 694 3.840666 ACATCGATGGCTGATATTACCCT 59.159 43.478 28.09 0.00 0.00 4.34
669 695 3.935203 CACATCGATGGCTGATATTACCC 59.065 47.826 28.09 0.00 0.00 3.69
670 696 4.569943 ACACATCGATGGCTGATATTACC 58.430 43.478 28.09 0.00 0.00 2.85
671 697 6.545504 AAACACATCGATGGCTGATATTAC 57.454 37.500 28.09 0.00 0.00 1.89
672 698 8.093927 TCATAAACACATCGATGGCTGATATTA 58.906 33.333 28.09 17.86 0.00 0.98
673 699 6.936335 TCATAAACACATCGATGGCTGATATT 59.064 34.615 28.09 16.63 0.00 1.28
674 700 6.466812 TCATAAACACATCGATGGCTGATAT 58.533 36.000 28.09 17.24 0.00 1.63
675 701 5.852827 TCATAAACACATCGATGGCTGATA 58.147 37.500 28.09 16.04 0.00 2.15
676 702 4.707105 TCATAAACACATCGATGGCTGAT 58.293 39.130 28.09 11.18 0.00 2.90
677 703 4.122046 CTCATAAACACATCGATGGCTGA 58.878 43.478 28.09 17.87 0.00 4.26
678 704 3.249320 CCTCATAAACACATCGATGGCTG 59.751 47.826 28.09 20.11 0.00 4.85
679 705 3.470709 CCTCATAAACACATCGATGGCT 58.529 45.455 28.09 10.58 0.00 4.75
680 706 2.549754 CCCTCATAAACACATCGATGGC 59.450 50.000 28.09 0.00 0.00 4.40
681 707 3.808728 ACCCTCATAAACACATCGATGG 58.191 45.455 28.09 18.89 0.00 3.51
682 708 4.697514 AGACCCTCATAAACACATCGATG 58.302 43.478 23.68 23.68 0.00 3.84
683 709 5.598830 AGTAGACCCTCATAAACACATCGAT 59.401 40.000 0.00 0.00 0.00 3.59
684 710 4.954202 AGTAGACCCTCATAAACACATCGA 59.046 41.667 0.00 0.00 0.00 3.59
685 711 5.043903 CAGTAGACCCTCATAAACACATCG 58.956 45.833 0.00 0.00 0.00 3.84
686 712 6.222038 TCAGTAGACCCTCATAAACACATC 57.778 41.667 0.00 0.00 0.00 3.06
687 713 6.620877 TTCAGTAGACCCTCATAAACACAT 57.379 37.500 0.00 0.00 0.00 3.21
688 714 5.568825 GCTTCAGTAGACCCTCATAAACACA 60.569 44.000 0.00 0.00 0.00 3.72
689 715 4.870991 GCTTCAGTAGACCCTCATAAACAC 59.129 45.833 0.00 0.00 0.00 3.32
690 716 4.530553 TGCTTCAGTAGACCCTCATAAACA 59.469 41.667 0.00 0.00 0.00 2.83
691 717 5.086104 TGCTTCAGTAGACCCTCATAAAC 57.914 43.478 0.00 0.00 0.00 2.01
692 718 5.023452 TCTGCTTCAGTAGACCCTCATAAA 58.977 41.667 0.00 0.00 31.83 1.40
693 719 4.610333 TCTGCTTCAGTAGACCCTCATAA 58.390 43.478 0.00 0.00 31.83 1.90
694 720 4.251103 TCTGCTTCAGTAGACCCTCATA 57.749 45.455 0.00 0.00 31.83 2.15
695 721 3.107402 TCTGCTTCAGTAGACCCTCAT 57.893 47.619 0.00 0.00 31.83 2.90
696 722 2.604912 TCTGCTTCAGTAGACCCTCA 57.395 50.000 0.00 0.00 31.83 3.86
697 723 2.829120 ACTTCTGCTTCAGTAGACCCTC 59.171 50.000 7.33 0.00 36.52 4.30
698 724 2.564947 CACTTCTGCTTCAGTAGACCCT 59.435 50.000 7.33 0.00 36.52 4.34
699 725 2.300437 ACACTTCTGCTTCAGTAGACCC 59.700 50.000 7.33 0.00 36.52 4.46
700 726 3.669251 ACACTTCTGCTTCAGTAGACC 57.331 47.619 7.33 0.00 36.52 3.85
701 727 5.755861 AGAAAACACTTCTGCTTCAGTAGAC 59.244 40.000 7.33 0.00 36.52 2.59
702 728 5.918608 AGAAAACACTTCTGCTTCAGTAGA 58.081 37.500 7.33 0.00 33.94 2.59
703 729 6.610741 AAGAAAACACTTCTGCTTCAGTAG 57.389 37.500 0.00 0.00 35.49 2.57
704 730 8.677148 ATTAAGAAAACACTTCTGCTTCAGTA 57.323 30.769 0.00 0.00 32.61 2.74
705 731 7.283127 TGATTAAGAAAACACTTCTGCTTCAGT 59.717 33.333 0.00 0.00 32.61 3.41
706 732 7.642669 TGATTAAGAAAACACTTCTGCTTCAG 58.357 34.615 0.00 0.00 0.00 3.02
707 733 7.566760 TGATTAAGAAAACACTTCTGCTTCA 57.433 32.000 0.00 0.00 0.00 3.02
708 734 7.061557 GCATGATTAAGAAAACACTTCTGCTTC 59.938 37.037 0.00 0.00 0.00 3.86
709 735 6.865205 GCATGATTAAGAAAACACTTCTGCTT 59.135 34.615 0.00 0.00 0.00 3.91
710 736 6.208204 AGCATGATTAAGAAAACACTTCTGCT 59.792 34.615 0.00 0.00 0.00 4.24
711 737 6.385033 AGCATGATTAAGAAAACACTTCTGC 58.615 36.000 0.00 0.00 0.00 4.26
712 738 8.807667 AAAGCATGATTAAGAAAACACTTCTG 57.192 30.769 0.00 0.00 0.00 3.02
713 739 7.805071 CGAAAGCATGATTAAGAAAACACTTCT 59.195 33.333 0.00 0.00 0.00 2.85
714 740 7.061094 CCGAAAGCATGATTAAGAAAACACTTC 59.939 37.037 0.00 0.00 0.00 3.01
715 741 6.863126 CCGAAAGCATGATTAAGAAAACACTT 59.137 34.615 0.00 0.00 0.00 3.16
716 742 6.381801 CCGAAAGCATGATTAAGAAAACACT 58.618 36.000 0.00 0.00 0.00 3.55
717 743 5.060940 GCCGAAAGCATGATTAAGAAAACAC 59.939 40.000 0.00 0.00 42.97 3.32
718 744 5.160641 GCCGAAAGCATGATTAAGAAAACA 58.839 37.500 0.00 0.00 42.97 2.83
719 745 5.686771 GCCGAAAGCATGATTAAGAAAAC 57.313 39.130 0.00 0.00 42.97 2.43
1569 1605 3.030308 ACGTCAAGCTCGTGCACG 61.030 61.111 32.76 32.76 42.74 5.34
1624 1660 2.370189 AGAACAGGTCCTTCCTCTTGTG 59.630 50.000 0.00 0.00 46.24 3.33
3831 12038 7.120923 ACGCTATAGTTTTGGAGGATTTCTA 57.879 36.000 0.84 0.00 0.00 2.10
3849 12056 3.253677 GGTGCAGATCTAGTGTACGCTAT 59.746 47.826 16.23 4.01 31.82 2.97
4258 12479 6.265422 GCTAAAATACCATAGCCATTTCACCT 59.735 38.462 0.00 0.00 38.85 4.00
4373 12594 2.127708 CTGCCATCCCTAACCCTAGTT 58.872 52.381 0.00 0.00 40.15 2.24
4374 12595 1.009675 ACTGCCATCCCTAACCCTAGT 59.990 52.381 0.00 0.00 0.00 2.57
4375 12596 1.807814 ACTGCCATCCCTAACCCTAG 58.192 55.000 0.00 0.00 0.00 3.02
4376 12597 2.280308 AACTGCCATCCCTAACCCTA 57.720 50.000 0.00 0.00 0.00 3.53
4377 12598 1.382914 AAACTGCCATCCCTAACCCT 58.617 50.000 0.00 0.00 0.00 4.34
4378 12599 1.824852 CAAAACTGCCATCCCTAACCC 59.175 52.381 0.00 0.00 0.00 4.11
4379 12600 1.204704 GCAAAACTGCCATCCCTAACC 59.795 52.381 0.00 0.00 0.00 2.85
4380 12601 2.654749 GCAAAACTGCCATCCCTAAC 57.345 50.000 0.00 0.00 0.00 2.34
5019 13246 1.646447 TGCCCAAACCCATACCCATAA 59.354 47.619 0.00 0.00 0.00 1.90
5237 13467 0.884704 GTCACGTCCTTGGTGCACAT 60.885 55.000 20.43 0.00 35.39 3.21
5299 13529 2.422597 CACATGCCAACTAACCGAAGA 58.577 47.619 0.00 0.00 0.00 2.87
5406 13664 0.666577 CTCGACCGAGTTGTCAACCC 60.667 60.000 12.17 0.00 37.47 4.11
5501 13760 2.166664 GAGCCGACTGGAGAAGTATGTT 59.833 50.000 0.00 0.00 40.07 2.71
5527 13801 1.437573 CCGCTCTAGTTCATCGGCA 59.562 57.895 0.00 0.00 33.36 5.69
5568 13842 1.531677 CCTTGTCGCATTATGCCAACG 60.532 52.381 11.90 1.92 41.12 4.10
5717 13991 0.041090 GGGAAAATTCTCTGCCCCCA 59.959 55.000 0.00 0.00 32.50 4.96
5836 14110 4.700213 AGTCCATACACCAAAAATTCTCCG 59.300 41.667 0.00 0.00 0.00 4.63
5872 14147 5.930837 TCTCAAAACATTCCACCAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
6278 14632 4.696455 ACAAAGCTTTTTGATGAACCAGG 58.304 39.130 9.53 0.00 35.93 4.45
6422 14778 7.735917 TGGTTGAATACAGAATACTAGGGATG 58.264 38.462 0.00 0.00 0.00 3.51
6424 14780 7.743116 TTGGTTGAATACAGAATACTAGGGA 57.257 36.000 0.00 0.00 0.00 4.20
6436 14792 9.140874 TGCATATTATTCCATTGGTTGAATACA 57.859 29.630 1.86 0.00 34.18 2.29
6454 14810 4.883006 TCTTGCTTGCTCATGTGCATATTA 59.117 37.500 22.01 7.41 42.96 0.98
6548 14904 9.056005 GGTAGTAAATGACATGCATCTAATTGA 57.944 33.333 0.00 0.00 35.78 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.