Multiple sequence alignment - TraesCS6D01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G172300 chr6D 100.000 2432 0 0 825 3256 159010682 159008251 0.000000e+00 4492.0
1 TraesCS6D01G172300 chr6D 100.000 548 0 0 1 548 159011506 159010959 0.000000e+00 1013.0
2 TraesCS6D01G172300 chr6B 92.933 1514 68 12 834 2326 289497663 289496168 0.000000e+00 2167.0
3 TraesCS6D01G172300 chr6A 93.143 875 51 3 1453 2326 217218399 217217533 0.000000e+00 1275.0
4 TraesCS6D01G172300 chr6A 89.088 614 30 20 858 1454 217235358 217234765 0.000000e+00 728.0
5 TraesCS6D01G172300 chr6A 71.053 950 221 36 1168 2096 602744898 602743982 7.180000e-42 182.0
6 TraesCS6D01G172300 chr6A 98.113 53 0 1 2368 2419 614424598 614424650 1.240000e-14 91.6
7 TraesCS6D01G172300 chr6A 95.833 48 2 0 2323 2370 217217495 217217448 9.690000e-11 78.7
8 TraesCS6D01G172300 chr6A 79.389 131 8 11 409 538 217235489 217235377 1.250000e-09 75.0
9 TraesCS6D01G172300 chr1D 96.038 530 16 2 2727 3256 377942980 377943504 0.000000e+00 857.0
10 TraesCS6D01G172300 chr1D 96.000 525 15 4 2733 3256 324425837 324425318 0.000000e+00 848.0
11 TraesCS6D01G172300 chr1D 95.802 524 17 3 2733 3256 144178033 144178551 0.000000e+00 841.0
12 TraesCS6D01G172300 chr1D 81.646 158 18 4 2369 2517 343182644 343182799 1.590000e-23 121.0
13 TraesCS6D01G172300 chr7D 95.472 530 20 3 2727 3256 32973643 32974168 0.000000e+00 843.0
14 TraesCS6D01G172300 chr7D 95.472 530 19 4 2727 3256 235366178 235366702 0.000000e+00 841.0
15 TraesCS6D01G172300 chr5D 95.810 525 16 5 2733 3256 546633116 546632597 0.000000e+00 843.0
16 TraesCS6D01G172300 chr5D 95.802 524 17 3 2733 3256 228790168 228789650 0.000000e+00 841.0
17 TraesCS6D01G172300 chr3D 95.472 530 16 4 2727 3256 295417728 295418249 0.000000e+00 839.0
18 TraesCS6D01G172300 chr3D 82.803 157 17 4 2369 2517 500136623 500136469 7.330000e-27 132.0
19 TraesCS6D01G172300 chr4D 95.611 524 17 3 2733 3256 371933718 371933201 0.000000e+00 835.0
20 TraesCS6D01G172300 chr2D 90.476 378 17 5 2370 2731 148286011 148286385 6.320000e-132 481.0
21 TraesCS6D01G172300 chr2D 89.501 381 23 6 2369 2732 628786728 628787108 1.770000e-127 466.0
22 TraesCS6D01G172300 chr2D 84.906 159 8 9 2370 2517 650590341 650590494 2.620000e-31 147.0
23 TraesCS6D01G172300 chr7B 88.773 383 25 3 2368 2732 159619524 159619906 1.380000e-123 453.0
24 TraesCS6D01G172300 chr4B 89.218 371 26 3 2376 2732 602989793 602989423 4.950000e-123 451.0
25 TraesCS6D01G172300 chr4B 88.251 383 23 7 2362 2722 668427769 668428151 3.860000e-119 438.0
26 TraesCS6D01G172300 chr4B 87.436 390 23 9 2362 2725 668800172 668800561 3.000000e-115 425.0
27 TraesCS6D01G172300 chrUn 89.125 377 19 7 2371 2725 29315331 29314955 1.780000e-122 449.0
28 TraesCS6D01G172300 chr5A 86.207 377 23 13 2371 2725 707995329 707995698 6.590000e-102 381.0
29 TraesCS6D01G172300 chr5A 94.652 187 10 0 2538 2724 697717691 697717877 1.140000e-74 291.0
30 TraesCS6D01G172300 chr5A 89.441 161 12 2 2362 2517 697712425 697712585 7.130000e-47 198.0
31 TraesCS6D01G172300 chr3B 86.957 276 27 7 2465 2731 651375408 651375683 5.280000e-78 302.0
32 TraesCS6D01G172300 chr7A 83.704 270 27 3 2369 2621 701526654 701526385 4.200000e-59 239.0
33 TraesCS6D01G172300 chr5B 82.353 136 13 7 2375 2501 693032248 693032115 1.240000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G172300 chr6D 159008251 159011506 3255 True 2752.50 4492 100.0000 1 3256 2 chr6D.!!$R1 3255
1 TraesCS6D01G172300 chr6B 289496168 289497663 1495 True 2167.00 2167 92.9330 834 2326 1 chr6B.!!$R1 1492
2 TraesCS6D01G172300 chr6A 217217448 217218399 951 True 676.85 1275 94.4880 1453 2370 2 chr6A.!!$R2 917
3 TraesCS6D01G172300 chr6A 217234765 217235489 724 True 401.50 728 84.2385 409 1454 2 chr6A.!!$R3 1045
4 TraesCS6D01G172300 chr1D 377942980 377943504 524 False 857.00 857 96.0380 2727 3256 1 chr1D.!!$F3 529
5 TraesCS6D01G172300 chr1D 324425318 324425837 519 True 848.00 848 96.0000 2733 3256 1 chr1D.!!$R1 523
6 TraesCS6D01G172300 chr1D 144178033 144178551 518 False 841.00 841 95.8020 2733 3256 1 chr1D.!!$F1 523
7 TraesCS6D01G172300 chr7D 32973643 32974168 525 False 843.00 843 95.4720 2727 3256 1 chr7D.!!$F1 529
8 TraesCS6D01G172300 chr7D 235366178 235366702 524 False 841.00 841 95.4720 2727 3256 1 chr7D.!!$F2 529
9 TraesCS6D01G172300 chr5D 546632597 546633116 519 True 843.00 843 95.8100 2733 3256 1 chr5D.!!$R2 523
10 TraesCS6D01G172300 chr5D 228789650 228790168 518 True 841.00 841 95.8020 2733 3256 1 chr5D.!!$R1 523
11 TraesCS6D01G172300 chr3D 295417728 295418249 521 False 839.00 839 95.4720 2727 3256 1 chr3D.!!$F1 529
12 TraesCS6D01G172300 chr4D 371933201 371933718 517 True 835.00 835 95.6110 2733 3256 1 chr4D.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 869 0.108281 TCTCGTCTCCGACTCGTCAT 60.108 55.0 0.0 0.0 38.4 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2550 2657 0.029433 TCATCCAAGAGATCGCGACG 59.971 55.0 12.93 0.0 30.59 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.476202 CTAAAAATGGTTTTAGGAAGGTTCTTG 57.524 33.333 9.96 0.00 46.74 3.02
29 30 7.432148 AAAATGGTTTTAGGAAGGTTCTTGT 57.568 32.000 0.00 0.00 0.00 3.16
30 31 7.432148 AAATGGTTTTAGGAAGGTTCTTGTT 57.568 32.000 0.00 0.00 0.00 2.83
31 32 7.432148 AATGGTTTTAGGAAGGTTCTTGTTT 57.568 32.000 0.00 0.00 0.00 2.83
32 33 6.215495 TGGTTTTAGGAAGGTTCTTGTTTG 57.785 37.500 0.00 0.00 0.00 2.93
33 34 5.128008 TGGTTTTAGGAAGGTTCTTGTTTGG 59.872 40.000 0.00 0.00 0.00 3.28
34 35 5.128171 GGTTTTAGGAAGGTTCTTGTTTGGT 59.872 40.000 0.00 0.00 0.00 3.67
35 36 6.351541 GGTTTTAGGAAGGTTCTTGTTTGGTT 60.352 38.462 0.00 0.00 0.00 3.67
36 37 6.860790 TTTAGGAAGGTTCTTGTTTGGTTT 57.139 33.333 0.00 0.00 0.00 3.27
37 38 6.459670 TTAGGAAGGTTCTTGTTTGGTTTC 57.540 37.500 0.00 0.00 0.00 2.78
38 39 3.704566 AGGAAGGTTCTTGTTTGGTTTCC 59.295 43.478 0.00 0.00 34.48 3.13
39 40 3.704566 GGAAGGTTCTTGTTTGGTTTCCT 59.295 43.478 0.00 0.00 32.20 3.36
40 41 4.161565 GGAAGGTTCTTGTTTGGTTTCCTT 59.838 41.667 0.00 0.00 36.86 3.36
41 42 5.338056 GGAAGGTTCTTGTTTGGTTTCCTTT 60.338 40.000 0.00 0.00 34.74 3.11
42 43 5.755409 AGGTTCTTGTTTGGTTTCCTTTT 57.245 34.783 0.00 0.00 0.00 2.27
43 44 6.121776 AGGTTCTTGTTTGGTTTCCTTTTT 57.878 33.333 0.00 0.00 0.00 1.94
44 45 6.170506 AGGTTCTTGTTTGGTTTCCTTTTTC 58.829 36.000 0.00 0.00 0.00 2.29
45 46 6.013725 AGGTTCTTGTTTGGTTTCCTTTTTCT 60.014 34.615 0.00 0.00 0.00 2.52
46 47 6.653320 GGTTCTTGTTTGGTTTCCTTTTTCTT 59.347 34.615 0.00 0.00 0.00 2.52
47 48 7.174253 GGTTCTTGTTTGGTTTCCTTTTTCTTT 59.826 33.333 0.00 0.00 0.00 2.52
48 49 7.899178 TCTTGTTTGGTTTCCTTTTTCTTTC 57.101 32.000 0.00 0.00 0.00 2.62
49 50 7.676004 TCTTGTTTGGTTTCCTTTTTCTTTCT 58.324 30.769 0.00 0.00 0.00 2.52
50 51 8.154203 TCTTGTTTGGTTTCCTTTTTCTTTCTT 58.846 29.630 0.00 0.00 0.00 2.52
51 52 7.665561 TGTTTGGTTTCCTTTTTCTTTCTTG 57.334 32.000 0.00 0.00 0.00 3.02
52 53 7.220740 TGTTTGGTTTCCTTTTTCTTTCTTGT 58.779 30.769 0.00 0.00 0.00 3.16
53 54 7.717436 TGTTTGGTTTCCTTTTTCTTTCTTGTT 59.283 29.630 0.00 0.00 0.00 2.83
54 55 7.665561 TTGGTTTCCTTTTTCTTTCTTGTTG 57.334 32.000 0.00 0.00 0.00 3.33
55 56 5.641636 TGGTTTCCTTTTTCTTTCTTGTTGC 59.358 36.000 0.00 0.00 0.00 4.17
56 57 5.874810 GGTTTCCTTTTTCTTTCTTGTTGCT 59.125 36.000 0.00 0.00 0.00 3.91
57 58 6.036083 GGTTTCCTTTTTCTTTCTTGTTGCTC 59.964 38.462 0.00 0.00 0.00 4.26
58 59 6.530019 TTCCTTTTTCTTTCTTGTTGCTCT 57.470 33.333 0.00 0.00 0.00 4.09
59 60 6.530019 TCCTTTTTCTTTCTTGTTGCTCTT 57.470 33.333 0.00 0.00 0.00 2.85
60 61 6.935167 TCCTTTTTCTTTCTTGTTGCTCTTT 58.065 32.000 0.00 0.00 0.00 2.52
61 62 7.386059 TCCTTTTTCTTTCTTGTTGCTCTTTT 58.614 30.769 0.00 0.00 0.00 2.27
62 63 7.331687 TCCTTTTTCTTTCTTGTTGCTCTTTTG 59.668 33.333 0.00 0.00 0.00 2.44
63 64 6.407475 TTTTCTTTCTTGTTGCTCTTTTGC 57.593 33.333 0.00 0.00 0.00 3.68
64 65 4.045636 TCTTTCTTGTTGCTCTTTTGCC 57.954 40.909 0.00 0.00 0.00 4.52
65 66 3.701040 TCTTTCTTGTTGCTCTTTTGCCT 59.299 39.130 0.00 0.00 0.00 4.75
66 67 4.887071 TCTTTCTTGTTGCTCTTTTGCCTA 59.113 37.500 0.00 0.00 0.00 3.93
67 68 4.568152 TTCTTGTTGCTCTTTTGCCTAC 57.432 40.909 0.00 0.00 0.00 3.18
68 69 2.884639 TCTTGTTGCTCTTTTGCCTACC 59.115 45.455 0.00 0.00 0.00 3.18
69 70 2.656947 TGTTGCTCTTTTGCCTACCT 57.343 45.000 0.00 0.00 0.00 3.08
70 71 2.944129 TGTTGCTCTTTTGCCTACCTT 58.056 42.857 0.00 0.00 0.00 3.50
71 72 3.295973 TGTTGCTCTTTTGCCTACCTTT 58.704 40.909 0.00 0.00 0.00 3.11
72 73 3.704061 TGTTGCTCTTTTGCCTACCTTTT 59.296 39.130 0.00 0.00 0.00 2.27
73 74 4.161377 TGTTGCTCTTTTGCCTACCTTTTT 59.839 37.500 0.00 0.00 0.00 1.94
124 125 6.959671 TTGCGGTTCAATTTATCATTTTCC 57.040 33.333 0.00 0.00 0.00 3.13
125 126 6.279513 TGCGGTTCAATTTATCATTTTCCT 57.720 33.333 0.00 0.00 0.00 3.36
126 127 6.696411 TGCGGTTCAATTTATCATTTTCCTT 58.304 32.000 0.00 0.00 0.00 3.36
127 128 6.811170 TGCGGTTCAATTTATCATTTTCCTTC 59.189 34.615 0.00 0.00 0.00 3.46
128 129 7.035612 GCGGTTCAATTTATCATTTTCCTTCT 58.964 34.615 0.00 0.00 0.00 2.85
129 130 7.009540 GCGGTTCAATTTATCATTTTCCTTCTG 59.990 37.037 0.00 0.00 0.00 3.02
130 131 8.028938 CGGTTCAATTTATCATTTTCCTTCTGT 58.971 33.333 0.00 0.00 0.00 3.41
131 132 9.710900 GGTTCAATTTATCATTTTCCTTCTGTT 57.289 29.630 0.00 0.00 0.00 3.16
145 146 9.705290 TTTTCCTTCTGTTTTTCTAATTATGCC 57.295 29.630 0.00 0.00 0.00 4.40
146 147 7.404671 TCCTTCTGTTTTTCTAATTATGCCC 57.595 36.000 0.00 0.00 0.00 5.36
147 148 6.951198 TCCTTCTGTTTTTCTAATTATGCCCA 59.049 34.615 0.00 0.00 0.00 5.36
148 149 7.453126 TCCTTCTGTTTTTCTAATTATGCCCAA 59.547 33.333 0.00 0.00 0.00 4.12
149 150 8.093927 CCTTCTGTTTTTCTAATTATGCCCAAA 58.906 33.333 0.00 0.00 0.00 3.28
150 151 9.487790 CTTCTGTTTTTCTAATTATGCCCAAAA 57.512 29.630 0.00 0.00 0.00 2.44
316 317 9.567776 TGAGTAAATATTCCTGTTTTGTGAAGA 57.432 29.630 0.00 0.00 0.00 2.87
319 320 9.406828 GTAAATATTCCTGTTTTGTGAAGAACC 57.593 33.333 0.00 0.00 0.00 3.62
320 321 7.839680 AATATTCCTGTTTTGTGAAGAACCT 57.160 32.000 0.00 0.00 0.00 3.50
321 322 8.934023 AATATTCCTGTTTTGTGAAGAACCTA 57.066 30.769 0.00 0.00 0.00 3.08
322 323 8.934023 ATATTCCTGTTTTGTGAAGAACCTAA 57.066 30.769 0.00 0.00 0.00 2.69
323 324 7.839680 ATTCCTGTTTTGTGAAGAACCTAAT 57.160 32.000 0.00 0.00 0.00 1.73
324 325 8.934023 ATTCCTGTTTTGTGAAGAACCTAATA 57.066 30.769 0.00 0.00 0.00 0.98
325 326 8.754991 TTCCTGTTTTGTGAAGAACCTAATAA 57.245 30.769 0.00 0.00 0.00 1.40
326 327 8.391075 TCCTGTTTTGTGAAGAACCTAATAAG 57.609 34.615 0.00 0.00 0.00 1.73
327 328 8.215050 TCCTGTTTTGTGAAGAACCTAATAAGA 58.785 33.333 0.00 0.00 0.00 2.10
328 329 8.846211 CCTGTTTTGTGAAGAACCTAATAAGAA 58.154 33.333 0.00 0.00 0.00 2.52
334 335 8.934023 TGTGAAGAACCTAATAAGAAATTGGT 57.066 30.769 0.00 0.00 0.00 3.67
335 336 9.010029 TGTGAAGAACCTAATAAGAAATTGGTC 57.990 33.333 0.00 0.00 0.00 4.02
336 337 8.175716 GTGAAGAACCTAATAAGAAATTGGTCG 58.824 37.037 0.00 0.00 0.00 4.79
337 338 8.098286 TGAAGAACCTAATAAGAAATTGGTCGA 58.902 33.333 0.00 0.00 0.00 4.20
338 339 8.857694 AAGAACCTAATAAGAAATTGGTCGAA 57.142 30.769 0.00 0.00 0.00 3.71
339 340 8.494016 AGAACCTAATAAGAAATTGGTCGAAG 57.506 34.615 0.00 0.00 0.00 3.79
340 341 8.319146 AGAACCTAATAAGAAATTGGTCGAAGA 58.681 33.333 0.00 0.00 0.00 2.87
341 342 8.494016 AACCTAATAAGAAATTGGTCGAAGAG 57.506 34.615 0.00 0.00 36.95 2.85
342 343 7.621796 ACCTAATAAGAAATTGGTCGAAGAGT 58.378 34.615 0.00 0.00 36.95 3.24
343 344 8.755977 ACCTAATAAGAAATTGGTCGAAGAGTA 58.244 33.333 0.00 0.00 36.95 2.59
344 345 9.765795 CCTAATAAGAAATTGGTCGAAGAGTAT 57.234 33.333 0.00 0.00 36.95 2.12
351 352 9.720769 AGAAATTGGTCGAAGAGTATAAAAAGA 57.279 29.630 0.00 0.00 36.95 2.52
354 355 9.720769 AATTGGTCGAAGAGTATAAAAAGAAGA 57.279 29.630 0.00 0.00 36.95 2.87
355 356 9.720769 ATTGGTCGAAGAGTATAAAAAGAAGAA 57.279 29.630 0.00 0.00 36.95 2.52
356 357 9.720769 TTGGTCGAAGAGTATAAAAAGAAGAAT 57.279 29.630 0.00 0.00 36.95 2.40
364 365 9.668497 AGAGTATAAAAAGAAGAATAAACCGCT 57.332 29.630 0.00 0.00 0.00 5.52
367 368 9.285770 GTATAAAAAGAAGAATAAACCGCTTGG 57.714 33.333 0.00 0.00 39.35 3.61
368 369 6.399639 AAAAAGAAGAATAAACCGCTTGGA 57.600 33.333 0.00 0.00 36.26 3.53
369 370 6.399639 AAAAGAAGAATAAACCGCTTGGAA 57.600 33.333 0.00 0.00 36.26 3.53
370 371 5.372547 AAGAAGAATAAACCGCTTGGAAC 57.627 39.130 0.00 0.00 36.26 3.62
371 372 4.394729 AGAAGAATAAACCGCTTGGAACA 58.605 39.130 0.00 0.00 36.26 3.18
372 373 4.455877 AGAAGAATAAACCGCTTGGAACAG 59.544 41.667 0.00 0.00 42.39 3.16
373 374 3.751518 AGAATAAACCGCTTGGAACAGT 58.248 40.909 0.00 0.00 42.39 3.55
374 375 4.901868 AGAATAAACCGCTTGGAACAGTA 58.098 39.130 0.00 0.00 42.39 2.74
375 376 5.497474 AGAATAAACCGCTTGGAACAGTAT 58.503 37.500 0.00 0.00 42.39 2.12
376 377 5.354234 AGAATAAACCGCTTGGAACAGTATG 59.646 40.000 0.00 0.00 42.39 2.39
377 378 2.561478 AACCGCTTGGAACAGTATGT 57.439 45.000 0.00 0.00 45.26 2.29
394 395 7.391148 CAGTATGTTTTTGGCCTGTATACTT 57.609 36.000 3.32 0.00 30.02 2.24
395 396 7.826690 CAGTATGTTTTTGGCCTGTATACTTT 58.173 34.615 3.32 0.00 30.02 2.66
396 397 8.303876 CAGTATGTTTTTGGCCTGTATACTTTT 58.696 33.333 3.32 0.00 30.02 2.27
397 398 8.866093 AGTATGTTTTTGGCCTGTATACTTTTT 58.134 29.630 3.32 0.00 0.00 1.94
455 456 9.727859 TTTAGATTGTTTTGCCTGTATACTACA 57.272 29.630 4.17 0.00 37.13 2.74
480 481 3.310860 GACCGCCGAATGGACTGGT 62.311 63.158 0.00 0.00 37.49 4.00
493 494 1.293498 ACTGGTCCAGTCATGACGC 59.707 57.895 19.42 11.31 41.21 5.19
494 495 1.448540 CTGGTCCAGTCATGACGCC 60.449 63.158 19.85 18.95 36.20 5.68
495 496 2.125106 GGTCCAGTCATGACGCCC 60.125 66.667 19.85 13.86 36.20 6.13
496 497 2.660064 GGTCCAGTCATGACGCCCT 61.660 63.158 19.85 0.00 36.20 5.19
497 498 1.448540 GTCCAGTCATGACGCCCTG 60.449 63.158 19.85 12.39 36.20 4.45
498 499 1.913262 TCCAGTCATGACGCCCTGT 60.913 57.895 19.85 0.00 36.20 4.00
527 528 2.040412 CCCTTGATATGGGCCTCTTACC 59.960 54.545 4.53 0.00 37.99 2.85
538 539 4.382320 TCTTACCCGTGCCCGTGC 62.382 66.667 0.00 0.00 38.26 5.34
546 547 4.451150 GTGCCCGTGCGATCCTCA 62.451 66.667 0.00 0.00 41.78 3.86
547 548 3.700970 TGCCCGTGCGATCCTCAA 61.701 61.111 0.00 0.00 41.78 3.02
858 859 1.378124 CTTCTCCCCGTCTCGTCTCC 61.378 65.000 0.00 0.00 0.00 3.71
868 869 0.108281 TCTCGTCTCCGACTCGTCAT 60.108 55.000 0.00 0.00 38.40 3.06
929 930 1.077858 ACGACGTACTCCTCCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
942 967 1.077930 CCCCTCCGTCTCGACTACA 60.078 63.158 0.00 0.00 0.00 2.74
943 968 1.096386 CCCCTCCGTCTCGACTACAG 61.096 65.000 0.00 0.00 0.00 2.74
949 974 2.045242 TCTCGACTACAGCCGCCT 60.045 61.111 0.00 0.00 0.00 5.52
976 1001 1.543802 CTATCTGATCCTCTCCGTGCC 59.456 57.143 0.00 0.00 0.00 5.01
977 1002 1.118356 ATCTGATCCTCTCCGTGCCC 61.118 60.000 0.00 0.00 0.00 5.36
978 1003 2.764128 TGATCCTCTCCGTGCCCC 60.764 66.667 0.00 0.00 0.00 5.80
979 1004 3.917760 GATCCTCTCCGTGCCCCG 61.918 72.222 0.00 0.00 0.00 5.73
1069 1102 0.679505 TCCCCCATTCATCGTCGATC 59.320 55.000 4.34 0.00 0.00 3.69
1124 1163 1.636340 CGATCGATTTCACCCGTGC 59.364 57.895 10.26 0.00 0.00 5.34
1126 1165 1.369625 GATCGATTTCACCCGTGCTT 58.630 50.000 0.00 0.00 0.00 3.91
1127 1166 1.737793 GATCGATTTCACCCGTGCTTT 59.262 47.619 0.00 0.00 0.00 3.51
1128 1167 1.153353 TCGATTTCACCCGTGCTTTC 58.847 50.000 0.00 0.00 0.00 2.62
1129 1168 1.156736 CGATTTCACCCGTGCTTTCT 58.843 50.000 0.00 0.00 0.00 2.52
1130 1169 1.128692 CGATTTCACCCGTGCTTTCTC 59.871 52.381 0.00 0.00 0.00 2.87
1146 1185 1.318576 TCTCTTCTGTGCAGACGTCA 58.681 50.000 19.50 0.00 37.14 4.35
1208 1247 4.899239 CGCGAGGAGGGCATGGAC 62.899 72.222 0.00 0.00 0.00 4.02
1209 1248 3.785859 GCGAGGAGGGCATGGACA 61.786 66.667 0.00 0.00 0.00 4.02
1210 1249 2.187946 CGAGGAGGGCATGGACAC 59.812 66.667 0.00 0.00 0.00 3.67
1211 1250 2.187946 GAGGAGGGCATGGACACG 59.812 66.667 0.00 0.00 0.00 4.49
1212 1251 4.101448 AGGAGGGCATGGACACGC 62.101 66.667 0.00 0.00 0.00 5.34
1213 1252 4.101448 GGAGGGCATGGACACGCT 62.101 66.667 0.00 0.00 0.00 5.07
1214 1253 2.512515 GAGGGCATGGACACGCTC 60.513 66.667 0.00 0.00 38.47 5.03
1215 1254 4.457496 AGGGCATGGACACGCTCG 62.457 66.667 0.00 0.00 32.36 5.03
1216 1255 4.760047 GGGCATGGACACGCTCGT 62.760 66.667 0.00 0.00 0.00 4.18
1217 1256 3.188786 GGCATGGACACGCTCGTC 61.189 66.667 0.00 0.00 35.03 4.20
1218 1257 3.545481 GCATGGACACGCTCGTCG 61.545 66.667 0.00 0.00 45.38 5.12
1219 1258 3.545481 CATGGACACGCTCGTCGC 61.545 66.667 0.00 0.00 43.23 5.19
1220 1259 4.796231 ATGGACACGCTCGTCGCC 62.796 66.667 0.00 0.00 43.23 5.54
1493 1544 4.443266 GCCGCTCTCGACTGCCTT 62.443 66.667 0.07 0.00 38.10 4.35
1595 1654 0.669625 CCCAAGACGAGACGAAACCC 60.670 60.000 0.00 0.00 0.00 4.11
1679 1738 2.599578 ACGTCGTACCCCTGCACT 60.600 61.111 0.00 0.00 0.00 4.40
2217 2282 1.152652 AGGAGGGATCGCGACATCT 60.153 57.895 12.93 8.99 0.00 2.90
2218 2283 1.006805 GGAGGGATCGCGACATCTG 60.007 63.158 12.93 0.00 0.00 2.90
2219 2284 1.736586 GAGGGATCGCGACATCTGT 59.263 57.895 12.93 0.00 0.00 3.41
2227 2292 0.389817 CGCGACATCTGTTGGGAGAA 60.390 55.000 0.00 0.00 42.91 2.87
2244 2309 4.670227 GAGAACAAGAATGGTTTCTCCG 57.330 45.455 0.00 0.00 41.42 4.63
2326 2392 1.806542 ACGGCAGCAACAATAGAAGTG 59.193 47.619 0.00 0.00 0.00 3.16
2327 2393 2.076100 CGGCAGCAACAATAGAAGTGA 58.924 47.619 0.00 0.00 0.00 3.41
2333 2440 5.233225 CAGCAACAATAGAAGTGAGACTGA 58.767 41.667 0.00 0.00 0.00 3.41
2393 2500 3.915437 TTTTTGAGAAATCTCGCCCAC 57.085 42.857 5.99 0.00 45.72 4.61
2394 2501 2.859165 TTTGAGAAATCTCGCCCACT 57.141 45.000 5.99 0.00 45.72 4.00
2395 2502 2.859165 TTGAGAAATCTCGCCCACTT 57.141 45.000 5.99 0.00 45.72 3.16
2396 2503 2.859165 TGAGAAATCTCGCCCACTTT 57.141 45.000 5.99 0.00 45.72 2.66
2397 2504 3.140325 TGAGAAATCTCGCCCACTTTT 57.860 42.857 5.99 0.00 45.72 2.27
2398 2505 4.280436 TGAGAAATCTCGCCCACTTTTA 57.720 40.909 5.99 0.00 45.72 1.52
2399 2506 4.843728 TGAGAAATCTCGCCCACTTTTAT 58.156 39.130 5.99 0.00 45.72 1.40
2400 2507 5.253330 TGAGAAATCTCGCCCACTTTTATT 58.747 37.500 5.99 0.00 45.72 1.40
2401 2508 5.123820 TGAGAAATCTCGCCCACTTTTATTG 59.876 40.000 5.99 0.00 45.72 1.90
2402 2509 5.253330 AGAAATCTCGCCCACTTTTATTGA 58.747 37.500 0.00 0.00 0.00 2.57
2403 2510 5.888161 AGAAATCTCGCCCACTTTTATTGAT 59.112 36.000 0.00 0.00 0.00 2.57
2404 2511 6.378280 AGAAATCTCGCCCACTTTTATTGATT 59.622 34.615 0.00 0.00 0.00 2.57
2405 2512 4.963276 TCTCGCCCACTTTTATTGATTG 57.037 40.909 0.00 0.00 0.00 2.67
2406 2513 4.584874 TCTCGCCCACTTTTATTGATTGA 58.415 39.130 0.00 0.00 0.00 2.57
2407 2514 5.192927 TCTCGCCCACTTTTATTGATTGAT 58.807 37.500 0.00 0.00 0.00 2.57
2408 2515 6.353323 TCTCGCCCACTTTTATTGATTGATA 58.647 36.000 0.00 0.00 0.00 2.15
2409 2516 6.826231 TCTCGCCCACTTTTATTGATTGATAA 59.174 34.615 0.00 0.00 0.00 1.75
2410 2517 6.791303 TCGCCCACTTTTATTGATTGATAAC 58.209 36.000 0.00 0.00 0.00 1.89
2411 2518 6.375736 TCGCCCACTTTTATTGATTGATAACA 59.624 34.615 0.00 0.00 0.00 2.41
2412 2519 7.032580 CGCCCACTTTTATTGATTGATAACAA 58.967 34.615 0.00 0.00 40.42 2.83
2414 2521 8.819974 GCCCACTTTTATTGATTGATAACAATG 58.180 33.333 2.55 0.00 45.30 2.82
2415 2522 9.874205 CCCACTTTTATTGATTGATAACAATGT 57.126 29.630 2.55 0.00 45.30 2.71
2426 2533 9.898152 TGATTGATAACAATGTTCATAGGTACA 57.102 29.630 0.22 0.00 45.30 2.90
2428 2535 7.764695 TGATAACAATGTTCATAGGTACACG 57.235 36.000 0.22 0.00 0.00 4.49
2429 2536 6.759356 TGATAACAATGTTCATAGGTACACGG 59.241 38.462 0.22 0.00 0.00 4.94
2430 2537 4.546829 ACAATGTTCATAGGTACACGGT 57.453 40.909 0.00 0.00 0.00 4.83
2431 2538 4.901868 ACAATGTTCATAGGTACACGGTT 58.098 39.130 0.00 0.00 0.00 4.44
2432 2539 4.933400 ACAATGTTCATAGGTACACGGTTC 59.067 41.667 0.00 0.00 0.00 3.62
2433 2540 3.220507 TGTTCATAGGTACACGGTTCG 57.779 47.619 0.00 0.00 0.00 3.95
2434 2541 2.094597 TGTTCATAGGTACACGGTTCGG 60.095 50.000 0.00 0.00 0.00 4.30
2435 2542 1.105457 TCATAGGTACACGGTTCGGG 58.895 55.000 0.00 0.00 35.82 5.14
2437 2544 1.205417 CATAGGTACACGGTTCGGGTT 59.795 52.381 0.00 0.00 42.45 4.11
2438 2545 2.208132 TAGGTACACGGTTCGGGTTA 57.792 50.000 0.00 0.00 42.45 2.85
2439 2546 0.603065 AGGTACACGGTTCGGGTTAC 59.397 55.000 0.00 0.00 42.45 2.50
2440 2547 0.389817 GGTACACGGTTCGGGTTACC 60.390 60.000 0.00 0.00 42.45 2.85
2441 2548 0.389817 GTACACGGTTCGGGTTACCC 60.390 60.000 11.09 11.09 42.45 3.69
2442 2549 0.829602 TACACGGTTCGGGTTACCCA 60.830 55.000 21.58 4.82 42.45 4.51
2443 2550 1.071128 CACGGTTCGGGTTACCCAA 59.929 57.895 21.58 10.89 45.83 4.12
2444 2551 1.071299 ACGGTTCGGGTTACCCAAC 59.929 57.895 21.58 20.68 45.83 3.77
2453 2560 2.636299 GTTACCCAACCACGCATGT 58.364 52.632 0.00 0.00 0.00 3.21
2454 2561 0.519961 GTTACCCAACCACGCATGTC 59.480 55.000 0.00 0.00 0.00 3.06
2455 2562 0.398696 TTACCCAACCACGCATGTCT 59.601 50.000 0.00 0.00 0.00 3.41
2456 2563 1.268066 TACCCAACCACGCATGTCTA 58.732 50.000 0.00 0.00 0.00 2.59
2457 2564 0.321298 ACCCAACCACGCATGTCTAC 60.321 55.000 0.00 0.00 0.00 2.59
2458 2565 1.024579 CCCAACCACGCATGTCTACC 61.025 60.000 0.00 0.00 0.00 3.18
2459 2566 0.036388 CCAACCACGCATGTCTACCT 60.036 55.000 0.00 0.00 0.00 3.08
2460 2567 1.206132 CCAACCACGCATGTCTACCTA 59.794 52.381 0.00 0.00 0.00 3.08
2461 2568 2.354303 CCAACCACGCATGTCTACCTAA 60.354 50.000 0.00 0.00 0.00 2.69
2462 2569 3.331150 CAACCACGCATGTCTACCTAAA 58.669 45.455 0.00 0.00 0.00 1.85
2463 2570 2.968675 ACCACGCATGTCTACCTAAAC 58.031 47.619 0.00 0.00 0.00 2.01
2464 2571 2.277084 CCACGCATGTCTACCTAAACC 58.723 52.381 0.00 0.00 0.00 3.27
2465 2572 2.093658 CCACGCATGTCTACCTAAACCT 60.094 50.000 0.00 0.00 0.00 3.50
2466 2573 3.131577 CCACGCATGTCTACCTAAACCTA 59.868 47.826 0.00 0.00 0.00 3.08
2467 2574 4.382254 CCACGCATGTCTACCTAAACCTAA 60.382 45.833 0.00 0.00 0.00 2.69
2468 2575 5.172934 CACGCATGTCTACCTAAACCTAAA 58.827 41.667 0.00 0.00 0.00 1.85
2469 2576 5.815740 CACGCATGTCTACCTAAACCTAAAT 59.184 40.000 0.00 0.00 0.00 1.40
2470 2577 6.315393 CACGCATGTCTACCTAAACCTAAATT 59.685 38.462 0.00 0.00 0.00 1.82
2471 2578 7.493320 CACGCATGTCTACCTAAACCTAAATTA 59.507 37.037 0.00 0.00 0.00 1.40
2472 2579 7.493645 ACGCATGTCTACCTAAACCTAAATTAC 59.506 37.037 0.00 0.00 0.00 1.89
2473 2580 7.493320 CGCATGTCTACCTAAACCTAAATTACA 59.507 37.037 0.00 0.00 0.00 2.41
2474 2581 9.169592 GCATGTCTACCTAAACCTAAATTACAA 57.830 33.333 0.00 0.00 0.00 2.41
2476 2583 8.782339 TGTCTACCTAAACCTAAATTACAAGC 57.218 34.615 0.00 0.00 0.00 4.01
2477 2584 8.377034 TGTCTACCTAAACCTAAATTACAAGCA 58.623 33.333 0.00 0.00 0.00 3.91
2478 2585 9.223099 GTCTACCTAAACCTAAATTACAAGCAA 57.777 33.333 0.00 0.00 0.00 3.91
2479 2586 9.796180 TCTACCTAAACCTAAATTACAAGCAAA 57.204 29.630 0.00 0.00 0.00 3.68
2480 2587 9.836076 CTACCTAAACCTAAATTACAAGCAAAC 57.164 33.333 0.00 0.00 0.00 2.93
2481 2588 8.473358 ACCTAAACCTAAATTACAAGCAAACT 57.527 30.769 0.00 0.00 0.00 2.66
2482 2589 8.920174 ACCTAAACCTAAATTACAAGCAAACTT 58.080 29.630 0.00 0.00 36.19 2.66
2494 2601 4.361451 AAGCAAACTTGGCGAGATTATG 57.639 40.909 9.20 2.95 33.84 1.90
2495 2602 3.609853 AGCAAACTTGGCGAGATTATGA 58.390 40.909 9.20 0.00 36.08 2.15
2496 2603 3.624861 AGCAAACTTGGCGAGATTATGAG 59.375 43.478 9.20 0.00 36.08 2.90
2497 2604 3.790123 GCAAACTTGGCGAGATTATGAGC 60.790 47.826 9.20 0.00 0.00 4.26
2514 2621 9.399403 GATTATGAGCCTCGAAATTAAAATTCC 57.601 33.333 0.00 0.00 0.00 3.01
2515 2622 8.519799 TTATGAGCCTCGAAATTAAAATTCCT 57.480 30.769 0.00 0.00 0.00 3.36
2516 2623 9.621629 TTATGAGCCTCGAAATTAAAATTCCTA 57.378 29.630 0.00 0.00 0.00 2.94
2517 2624 7.931578 TGAGCCTCGAAATTAAAATTCCTAA 57.068 32.000 0.00 0.00 0.00 2.69
2518 2625 8.343168 TGAGCCTCGAAATTAAAATTCCTAAA 57.657 30.769 0.00 0.00 0.00 1.85
2519 2626 8.966868 TGAGCCTCGAAATTAAAATTCCTAAAT 58.033 29.630 0.00 0.00 0.00 1.40
2520 2627 9.237846 GAGCCTCGAAATTAAAATTCCTAAATG 57.762 33.333 0.00 0.00 0.00 2.32
2521 2628 8.966868 AGCCTCGAAATTAAAATTCCTAAATGA 58.033 29.630 0.00 0.00 0.00 2.57
2522 2629 9.581099 GCCTCGAAATTAAAATTCCTAAATGAA 57.419 29.630 0.00 0.00 0.00 2.57
2551 2658 8.984764 AGCTAGATATATAAGAAGATCTACGCG 58.015 37.037 3.53 3.53 34.18 6.01
2552 2659 8.767085 GCTAGATATATAAGAAGATCTACGCGT 58.233 37.037 19.17 19.17 31.25 6.01
2554 2661 7.843482 AGATATATAAGAAGATCTACGCGTCG 58.157 38.462 18.63 10.61 0.00 5.12
2555 2662 2.380102 TAAGAAGATCTACGCGTCGC 57.620 50.000 18.63 7.29 0.00 5.19
2566 2673 2.102357 GCGTCGCGATCTCTTGGA 59.898 61.111 14.06 0.00 0.00 3.53
2567 2674 1.299468 GCGTCGCGATCTCTTGGAT 60.299 57.895 14.06 0.00 37.37 3.41
2568 2675 1.543941 GCGTCGCGATCTCTTGGATG 61.544 60.000 14.06 0.00 34.33 3.51
2569 2676 0.029433 CGTCGCGATCTCTTGGATGA 59.971 55.000 14.06 0.00 34.33 2.92
2570 2677 1.335415 CGTCGCGATCTCTTGGATGAT 60.335 52.381 14.06 0.00 34.33 2.45
2571 2678 2.095718 CGTCGCGATCTCTTGGATGATA 60.096 50.000 14.06 0.00 34.33 2.15
2572 2679 3.497118 GTCGCGATCTCTTGGATGATAG 58.503 50.000 14.06 0.00 34.33 2.08
2573 2680 2.095008 TCGCGATCTCTTGGATGATAGC 60.095 50.000 3.71 0.00 37.75 2.97
2574 2681 2.615869 GCGATCTCTTGGATGATAGCC 58.384 52.381 0.00 0.00 36.02 3.93
2575 2682 2.873609 CGATCTCTTGGATGATAGCCG 58.126 52.381 0.00 0.00 34.33 5.52
2576 2683 2.615869 GATCTCTTGGATGATAGCCGC 58.384 52.381 0.00 0.00 34.33 6.53
2577 2684 1.413118 TCTCTTGGATGATAGCCGCA 58.587 50.000 0.00 0.00 0.00 5.69
2578 2685 1.973515 TCTCTTGGATGATAGCCGCAT 59.026 47.619 0.00 0.00 0.00 4.73
2579 2686 2.369860 TCTCTTGGATGATAGCCGCATT 59.630 45.455 0.00 0.00 0.00 3.56
2580 2687 3.578282 TCTCTTGGATGATAGCCGCATTA 59.422 43.478 0.00 0.00 0.00 1.90
2581 2688 3.930336 TCTTGGATGATAGCCGCATTAG 58.070 45.455 0.00 0.00 0.00 1.73
2582 2689 2.768253 TGGATGATAGCCGCATTAGG 57.232 50.000 0.00 0.00 0.00 2.69
2583 2690 2.256306 TGGATGATAGCCGCATTAGGA 58.744 47.619 0.00 0.00 0.00 2.94
2584 2691 2.028112 TGGATGATAGCCGCATTAGGAC 60.028 50.000 0.00 0.00 0.00 3.85
2585 2692 2.622436 GATGATAGCCGCATTAGGACC 58.378 52.381 0.00 0.00 0.00 4.46
2586 2693 1.717032 TGATAGCCGCATTAGGACCT 58.283 50.000 0.00 0.00 0.00 3.85
2587 2694 1.618837 TGATAGCCGCATTAGGACCTC 59.381 52.381 0.00 0.00 0.00 3.85
2588 2695 0.977395 ATAGCCGCATTAGGACCTCC 59.023 55.000 0.00 0.00 0.00 4.30
2599 2706 2.037527 GACCTCCTGTCCCCTCGT 59.962 66.667 0.00 0.00 38.09 4.18
2600 2707 1.609794 GACCTCCTGTCCCCTCGTT 60.610 63.158 0.00 0.00 38.09 3.85
2601 2708 1.889530 GACCTCCTGTCCCCTCGTTG 61.890 65.000 0.00 0.00 38.09 4.10
2602 2709 1.609501 CCTCCTGTCCCCTCGTTGA 60.610 63.158 0.00 0.00 0.00 3.18
2603 2710 0.978146 CCTCCTGTCCCCTCGTTGAT 60.978 60.000 0.00 0.00 0.00 2.57
2604 2711 0.176680 CTCCTGTCCCCTCGTTGATG 59.823 60.000 0.00 0.00 0.00 3.07
2605 2712 0.544357 TCCTGTCCCCTCGTTGATGT 60.544 55.000 0.00 0.00 0.00 3.06
2606 2713 0.108138 CCTGTCCCCTCGTTGATGTC 60.108 60.000 0.00 0.00 0.00 3.06
2607 2714 0.898320 CTGTCCCCTCGTTGATGTCT 59.102 55.000 0.00 0.00 0.00 3.41
2608 2715 1.276421 CTGTCCCCTCGTTGATGTCTT 59.724 52.381 0.00 0.00 0.00 3.01
2609 2716 1.697432 TGTCCCCTCGTTGATGTCTTT 59.303 47.619 0.00 0.00 0.00 2.52
2610 2717 2.105821 TGTCCCCTCGTTGATGTCTTTT 59.894 45.455 0.00 0.00 0.00 2.27
2611 2718 3.325425 TGTCCCCTCGTTGATGTCTTTTA 59.675 43.478 0.00 0.00 0.00 1.52
2612 2719 3.683340 GTCCCCTCGTTGATGTCTTTTAC 59.317 47.826 0.00 0.00 0.00 2.01
2613 2720 3.007635 CCCCTCGTTGATGTCTTTTACC 58.992 50.000 0.00 0.00 0.00 2.85
2614 2721 3.558321 CCCCTCGTTGATGTCTTTTACCA 60.558 47.826 0.00 0.00 0.00 3.25
2615 2722 3.435671 CCCTCGTTGATGTCTTTTACCAC 59.564 47.826 0.00 0.00 0.00 4.16
2616 2723 4.315803 CCTCGTTGATGTCTTTTACCACT 58.684 43.478 0.00 0.00 0.00 4.00
2617 2724 4.755123 CCTCGTTGATGTCTTTTACCACTT 59.245 41.667 0.00 0.00 0.00 3.16
2618 2725 5.107065 CCTCGTTGATGTCTTTTACCACTTC 60.107 44.000 0.00 0.00 0.00 3.01
2619 2726 5.607477 TCGTTGATGTCTTTTACCACTTCT 58.393 37.500 0.00 0.00 0.00 2.85
2620 2727 6.751157 TCGTTGATGTCTTTTACCACTTCTA 58.249 36.000 0.00 0.00 0.00 2.10
2621 2728 6.866770 TCGTTGATGTCTTTTACCACTTCTAG 59.133 38.462 0.00 0.00 0.00 2.43
2622 2729 6.090898 CGTTGATGTCTTTTACCACTTCTAGG 59.909 42.308 0.00 0.00 0.00 3.02
2623 2730 5.488341 TGATGTCTTTTACCACTTCTAGGC 58.512 41.667 0.00 0.00 0.00 3.93
2624 2731 4.967084 TGTCTTTTACCACTTCTAGGCA 57.033 40.909 0.00 0.00 0.00 4.75
2625 2732 4.894784 TGTCTTTTACCACTTCTAGGCAG 58.105 43.478 0.00 0.00 0.00 4.85
2626 2733 4.347000 TGTCTTTTACCACTTCTAGGCAGT 59.653 41.667 0.00 0.00 0.00 4.40
2627 2734 4.930405 GTCTTTTACCACTTCTAGGCAGTC 59.070 45.833 0.00 0.00 0.00 3.51
2628 2735 4.838986 TCTTTTACCACTTCTAGGCAGTCT 59.161 41.667 0.00 0.00 0.00 3.24
2629 2736 4.537135 TTTACCACTTCTAGGCAGTCTG 57.463 45.455 0.00 0.00 0.00 3.51
2630 2737 2.310779 ACCACTTCTAGGCAGTCTGA 57.689 50.000 3.32 0.00 0.00 3.27
2631 2738 2.826488 ACCACTTCTAGGCAGTCTGAT 58.174 47.619 3.32 0.00 0.00 2.90
2632 2739 2.499289 ACCACTTCTAGGCAGTCTGATG 59.501 50.000 3.32 0.00 0.00 3.07
2633 2740 2.548875 CACTTCTAGGCAGTCTGATGC 58.451 52.381 3.32 4.24 45.74 3.91
2634 2741 2.168106 CACTTCTAGGCAGTCTGATGCT 59.832 50.000 3.32 0.00 45.75 3.79
2635 2742 3.382865 CACTTCTAGGCAGTCTGATGCTA 59.617 47.826 3.32 0.00 45.75 3.49
2636 2743 3.383185 ACTTCTAGGCAGTCTGATGCTAC 59.617 47.826 3.32 0.00 45.75 3.58
2637 2744 3.304911 TCTAGGCAGTCTGATGCTACT 57.695 47.619 3.32 0.00 45.75 2.57
2638 2745 4.439253 TCTAGGCAGTCTGATGCTACTA 57.561 45.455 3.32 0.00 45.75 1.82
2639 2746 4.138290 TCTAGGCAGTCTGATGCTACTAC 58.862 47.826 3.32 0.00 45.75 2.73
2640 2747 2.035632 AGGCAGTCTGATGCTACTACC 58.964 52.381 3.32 0.00 45.75 3.18
2641 2748 1.757118 GGCAGTCTGATGCTACTACCA 59.243 52.381 3.32 0.00 45.75 3.25
2642 2749 2.366916 GGCAGTCTGATGCTACTACCAT 59.633 50.000 3.32 0.00 45.75 3.55
2643 2750 3.574396 GGCAGTCTGATGCTACTACCATA 59.426 47.826 3.32 0.00 45.75 2.74
2644 2751 4.221703 GGCAGTCTGATGCTACTACCATAT 59.778 45.833 3.32 0.00 45.75 1.78
2645 2752 5.279708 GGCAGTCTGATGCTACTACCATATT 60.280 44.000 3.32 0.00 45.75 1.28
2646 2753 5.866633 GCAGTCTGATGCTACTACCATATTC 59.133 44.000 3.32 0.00 43.07 1.75
2647 2754 6.295011 GCAGTCTGATGCTACTACCATATTCT 60.295 42.308 3.32 0.00 43.07 2.40
2648 2755 7.089538 CAGTCTGATGCTACTACCATATTCTG 58.910 42.308 0.00 0.00 0.00 3.02
2649 2756 7.007116 AGTCTGATGCTACTACCATATTCTGA 58.993 38.462 0.00 0.00 0.00 3.27
2650 2757 7.507277 AGTCTGATGCTACTACCATATTCTGAA 59.493 37.037 0.00 0.00 0.00 3.02
2651 2758 8.310382 GTCTGATGCTACTACCATATTCTGAAT 58.690 37.037 8.14 8.14 0.00 2.57
2652 2759 9.533831 TCTGATGCTACTACCATATTCTGAATA 57.466 33.333 12.17 12.17 0.00 1.75
2669 2776 9.878667 ATTCTGAATATCAAGATCATCTGCTAG 57.121 33.333 0.00 0.00 0.00 3.42
2670 2777 7.838884 TCTGAATATCAAGATCATCTGCTAGG 58.161 38.462 0.00 0.00 0.00 3.02
2671 2778 6.944096 TGAATATCAAGATCATCTGCTAGGG 58.056 40.000 0.00 0.00 0.00 3.53
2672 2779 3.699411 ATCAAGATCATCTGCTAGGGC 57.301 47.619 0.00 0.00 39.26 5.19
2682 2789 1.604378 TGCTAGGGCAAGAGCTTCC 59.396 57.895 6.16 0.00 46.36 3.46
2683 2790 1.153066 GCTAGGGCAAGAGCTTCCC 60.153 63.158 6.27 6.27 41.70 3.97
2686 2793 2.753446 GGGCAAGAGCTTCCCTGC 60.753 66.667 6.95 4.83 41.70 4.85
2687 2794 2.034687 GGCAAGAGCTTCCCTGCA 59.965 61.111 10.99 0.00 41.70 4.41
2688 2795 1.379576 GGCAAGAGCTTCCCTGCAT 60.380 57.895 10.99 0.00 41.70 3.96
2689 2796 1.664321 GGCAAGAGCTTCCCTGCATG 61.664 60.000 10.99 0.00 41.70 4.06
2690 2797 1.807886 CAAGAGCTTCCCTGCATGC 59.192 57.895 11.82 11.82 34.99 4.06
2691 2798 0.963856 CAAGAGCTTCCCTGCATGCA 60.964 55.000 21.29 21.29 34.99 3.96
2692 2799 0.251474 AAGAGCTTCCCTGCATGCAA 60.251 50.000 22.88 3.76 34.99 4.08
2693 2800 0.251474 AGAGCTTCCCTGCATGCAAA 60.251 50.000 22.88 12.39 34.99 3.68
2694 2801 0.604578 GAGCTTCCCTGCATGCAAAA 59.395 50.000 22.88 14.66 34.99 2.44
2695 2802 0.606604 AGCTTCCCTGCATGCAAAAG 59.393 50.000 22.88 23.03 34.99 2.27
2696 2803 0.319405 GCTTCCCTGCATGCAAAAGT 59.681 50.000 22.88 0.00 0.00 2.66
2697 2804 1.270465 GCTTCCCTGCATGCAAAAGTT 60.270 47.619 22.88 0.00 0.00 2.66
2698 2805 2.807837 GCTTCCCTGCATGCAAAAGTTT 60.808 45.455 22.88 0.00 0.00 2.66
2699 2806 2.818130 TCCCTGCATGCAAAAGTTTC 57.182 45.000 22.88 0.00 0.00 2.78
2700 2807 1.000385 TCCCTGCATGCAAAAGTTTCG 60.000 47.619 22.88 7.09 0.00 3.46
2701 2808 1.000385 CCCTGCATGCAAAAGTTTCGA 60.000 47.619 22.88 0.00 0.00 3.71
2702 2809 2.322161 CCTGCATGCAAAAGTTTCGAG 58.678 47.619 22.88 5.55 0.00 4.04
2703 2810 1.717645 CTGCATGCAAAAGTTTCGAGC 59.282 47.619 22.88 0.00 0.00 5.03
2704 2811 1.066757 TGCATGCAAAAGTTTCGAGCA 59.933 42.857 20.30 11.25 39.79 4.26
2705 2812 2.288334 TGCATGCAAAAGTTTCGAGCAT 60.288 40.909 20.30 14.00 45.92 3.79
2706 2813 2.343544 GCATGCAAAAGTTTCGAGCATC 59.656 45.455 14.21 10.05 43.43 3.91
2707 2814 3.567530 CATGCAAAAGTTTCGAGCATCA 58.432 40.909 15.89 0.00 43.43 3.07
2708 2815 3.921119 TGCAAAAGTTTCGAGCATCAT 57.079 38.095 6.32 0.00 33.17 2.45
2709 2816 4.241590 TGCAAAAGTTTCGAGCATCATT 57.758 36.364 6.32 0.00 33.17 2.57
2710 2817 3.982701 TGCAAAAGTTTCGAGCATCATTG 59.017 39.130 6.32 0.00 33.17 2.82
2711 2818 3.365820 GCAAAAGTTTCGAGCATCATTGG 59.634 43.478 0.00 0.00 33.17 3.16
2712 2819 4.797471 CAAAAGTTTCGAGCATCATTGGA 58.203 39.130 0.00 0.00 33.17 3.53
2713 2820 5.404946 CAAAAGTTTCGAGCATCATTGGAT 58.595 37.500 0.00 0.00 33.17 3.41
2714 2821 4.889832 AAGTTTCGAGCATCATTGGATC 57.110 40.909 0.00 0.00 33.17 3.36
2715 2822 3.877559 AGTTTCGAGCATCATTGGATCA 58.122 40.909 0.00 0.00 33.17 2.92
2716 2823 3.624861 AGTTTCGAGCATCATTGGATCAC 59.375 43.478 0.00 0.00 33.17 3.06
2717 2824 1.856802 TCGAGCATCATTGGATCACG 58.143 50.000 0.00 0.00 33.17 4.35
2718 2825 1.408702 TCGAGCATCATTGGATCACGA 59.591 47.619 0.00 0.00 33.17 4.35
2719 2826 1.791204 CGAGCATCATTGGATCACGAG 59.209 52.381 0.00 0.00 33.17 4.18
2720 2827 2.800985 CGAGCATCATTGGATCACGAGT 60.801 50.000 0.00 0.00 33.17 4.18
2721 2828 3.201290 GAGCATCATTGGATCACGAGTT 58.799 45.455 0.00 0.00 33.17 3.01
2722 2829 3.201290 AGCATCATTGGATCACGAGTTC 58.799 45.455 0.00 0.00 0.00 3.01
2723 2830 2.289002 GCATCATTGGATCACGAGTTCC 59.711 50.000 3.25 3.25 34.74 3.62
2724 2831 3.801698 CATCATTGGATCACGAGTTCCT 58.198 45.455 10.70 0.00 35.14 3.36
2725 2832 3.526931 TCATTGGATCACGAGTTCCTC 57.473 47.619 10.70 0.00 35.14 3.71
2747 2854 6.151663 TCGGAAGATGATACGTCCATTTTA 57.848 37.500 0.00 0.00 38.09 1.52
2806 2913 7.059788 TGGGCTGTTATTACACATTATGTCAT 58.940 34.615 0.00 0.00 42.09 3.06
2940 3047 5.016831 ACAACTCCAAAAGTCCTGAAACTT 58.983 37.500 0.00 0.00 41.20 2.66
3000 3108 2.618709 CGAAAGAAATACATCAGGGGGC 59.381 50.000 0.00 0.00 0.00 5.80
3079 3188 1.604378 CTCTCCGGTGGCCATCTTT 59.396 57.895 15.59 0.00 0.00 2.52
3091 3200 5.068987 GGTGGCCATCTTTTGCTATATGAAA 59.931 40.000 9.72 0.00 0.00 2.69
3108 3218 7.938140 ATATGAAATCTTTCGTCCAGGAAAA 57.062 32.000 0.00 0.00 40.01 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.983789 ACAAGAACCTTCCTAAAACCATTTTTA 58.016 29.630 0.00 0.00 36.32 1.52
4 5 7.857456 ACAAGAACCTTCCTAAAACCATTTTT 58.143 30.769 0.00 0.00 38.51 1.94
5 6 7.432148 ACAAGAACCTTCCTAAAACCATTTT 57.568 32.000 0.00 0.00 36.67 1.82
6 7 7.432148 AACAAGAACCTTCCTAAAACCATTT 57.568 32.000 0.00 0.00 0.00 2.32
7 8 7.272244 CAAACAAGAACCTTCCTAAAACCATT 58.728 34.615 0.00 0.00 0.00 3.16
8 9 6.183360 CCAAACAAGAACCTTCCTAAAACCAT 60.183 38.462 0.00 0.00 0.00 3.55
9 10 5.128008 CCAAACAAGAACCTTCCTAAAACCA 59.872 40.000 0.00 0.00 0.00 3.67
10 11 5.128171 ACCAAACAAGAACCTTCCTAAAACC 59.872 40.000 0.00 0.00 0.00 3.27
11 12 6.216801 ACCAAACAAGAACCTTCCTAAAAC 57.783 37.500 0.00 0.00 0.00 2.43
12 13 6.860790 AACCAAACAAGAACCTTCCTAAAA 57.139 33.333 0.00 0.00 0.00 1.52
13 14 6.127281 GGAAACCAAACAAGAACCTTCCTAAA 60.127 38.462 0.00 0.00 0.00 1.85
14 15 5.361571 GGAAACCAAACAAGAACCTTCCTAA 59.638 40.000 0.00 0.00 0.00 2.69
15 16 4.891168 GGAAACCAAACAAGAACCTTCCTA 59.109 41.667 0.00 0.00 0.00 2.94
16 17 3.704566 GGAAACCAAACAAGAACCTTCCT 59.295 43.478 0.00 0.00 0.00 3.36
17 18 3.704566 AGGAAACCAAACAAGAACCTTCC 59.295 43.478 0.00 0.00 32.87 3.46
18 19 5.339008 AAGGAAACCAAACAAGAACCTTC 57.661 39.130 0.00 0.00 32.07 3.46
19 20 5.755409 AAAGGAAACCAAACAAGAACCTT 57.245 34.783 0.00 0.00 37.99 3.50
20 21 5.755409 AAAAGGAAACCAAACAAGAACCT 57.245 34.783 0.00 0.00 0.00 3.50
21 22 6.170506 AGAAAAAGGAAACCAAACAAGAACC 58.829 36.000 0.00 0.00 0.00 3.62
22 23 7.667043 AAGAAAAAGGAAACCAAACAAGAAC 57.333 32.000 0.00 0.00 0.00 3.01
23 24 8.154203 AGAAAGAAAAAGGAAACCAAACAAGAA 58.846 29.630 0.00 0.00 0.00 2.52
24 25 7.676004 AGAAAGAAAAAGGAAACCAAACAAGA 58.324 30.769 0.00 0.00 0.00 3.02
25 26 7.905604 AGAAAGAAAAAGGAAACCAAACAAG 57.094 32.000 0.00 0.00 0.00 3.16
26 27 7.717436 ACAAGAAAGAAAAAGGAAACCAAACAA 59.283 29.630 0.00 0.00 0.00 2.83
27 28 7.220740 ACAAGAAAGAAAAAGGAAACCAAACA 58.779 30.769 0.00 0.00 0.00 2.83
28 29 7.667043 ACAAGAAAGAAAAAGGAAACCAAAC 57.333 32.000 0.00 0.00 0.00 2.93
29 30 7.308288 GCAACAAGAAAGAAAAAGGAAACCAAA 60.308 33.333 0.00 0.00 0.00 3.28
30 31 6.148645 GCAACAAGAAAGAAAAAGGAAACCAA 59.851 34.615 0.00 0.00 0.00 3.67
31 32 5.641636 GCAACAAGAAAGAAAAAGGAAACCA 59.358 36.000 0.00 0.00 0.00 3.67
32 33 5.874810 AGCAACAAGAAAGAAAAAGGAAACC 59.125 36.000 0.00 0.00 0.00 3.27
33 34 6.813649 AGAGCAACAAGAAAGAAAAAGGAAAC 59.186 34.615 0.00 0.00 0.00 2.78
34 35 6.935167 AGAGCAACAAGAAAGAAAAAGGAAA 58.065 32.000 0.00 0.00 0.00 3.13
35 36 6.530019 AGAGCAACAAGAAAGAAAAAGGAA 57.470 33.333 0.00 0.00 0.00 3.36
36 37 6.530019 AAGAGCAACAAGAAAGAAAAAGGA 57.470 33.333 0.00 0.00 0.00 3.36
37 38 7.458677 CAAAAGAGCAACAAGAAAGAAAAAGG 58.541 34.615 0.00 0.00 0.00 3.11
38 39 6.957635 GCAAAAGAGCAACAAGAAAGAAAAAG 59.042 34.615 0.00 0.00 0.00 2.27
39 40 6.128309 GGCAAAAGAGCAACAAGAAAGAAAAA 60.128 34.615 0.00 0.00 35.83 1.94
40 41 5.351189 GGCAAAAGAGCAACAAGAAAGAAAA 59.649 36.000 0.00 0.00 35.83 2.29
41 42 4.869861 GGCAAAAGAGCAACAAGAAAGAAA 59.130 37.500 0.00 0.00 35.83 2.52
42 43 4.160252 AGGCAAAAGAGCAACAAGAAAGAA 59.840 37.500 0.00 0.00 35.83 2.52
43 44 3.701040 AGGCAAAAGAGCAACAAGAAAGA 59.299 39.130 0.00 0.00 35.83 2.52
44 45 4.050852 AGGCAAAAGAGCAACAAGAAAG 57.949 40.909 0.00 0.00 35.83 2.62
45 46 4.202111 GGTAGGCAAAAGAGCAACAAGAAA 60.202 41.667 0.00 0.00 35.83 2.52
46 47 3.317993 GGTAGGCAAAAGAGCAACAAGAA 59.682 43.478 0.00 0.00 35.83 2.52
47 48 2.884639 GGTAGGCAAAAGAGCAACAAGA 59.115 45.455 0.00 0.00 35.83 3.02
48 49 2.887152 AGGTAGGCAAAAGAGCAACAAG 59.113 45.455 0.00 0.00 35.83 3.16
49 50 2.944129 AGGTAGGCAAAAGAGCAACAA 58.056 42.857 0.00 0.00 35.83 2.83
50 51 2.656947 AGGTAGGCAAAAGAGCAACA 57.343 45.000 0.00 0.00 35.83 3.33
51 52 4.322080 AAAAGGTAGGCAAAAGAGCAAC 57.678 40.909 0.00 0.00 35.83 4.17
98 99 8.286097 GGAAAATGATAAATTGAACCGCAAAAA 58.714 29.630 0.00 0.00 40.48 1.94
99 100 7.659390 AGGAAAATGATAAATTGAACCGCAAAA 59.341 29.630 0.00 0.00 40.48 2.44
100 101 7.158021 AGGAAAATGATAAATTGAACCGCAAA 58.842 30.769 0.00 0.00 40.48 3.68
101 102 6.696411 AGGAAAATGATAAATTGAACCGCAA 58.304 32.000 0.00 0.00 41.53 4.85
102 103 6.279513 AGGAAAATGATAAATTGAACCGCA 57.720 33.333 0.00 0.00 0.00 5.69
103 104 7.009540 CAGAAGGAAAATGATAAATTGAACCGC 59.990 37.037 0.00 0.00 0.00 5.68
104 105 8.028938 ACAGAAGGAAAATGATAAATTGAACCG 58.971 33.333 0.00 0.00 0.00 4.44
105 106 9.710900 AACAGAAGGAAAATGATAAATTGAACC 57.289 29.630 0.00 0.00 0.00 3.62
119 120 9.705290 GGCATAATTAGAAAAACAGAAGGAAAA 57.295 29.630 0.00 0.00 0.00 2.29
120 121 8.311109 GGGCATAATTAGAAAAACAGAAGGAAA 58.689 33.333 0.00 0.00 0.00 3.13
121 122 7.453126 TGGGCATAATTAGAAAAACAGAAGGAA 59.547 33.333 0.00 0.00 0.00 3.36
122 123 6.951198 TGGGCATAATTAGAAAAACAGAAGGA 59.049 34.615 0.00 0.00 0.00 3.36
123 124 7.169158 TGGGCATAATTAGAAAAACAGAAGG 57.831 36.000 0.00 0.00 0.00 3.46
124 125 9.487790 TTTTGGGCATAATTAGAAAAACAGAAG 57.512 29.630 0.00 0.00 0.00 2.85
290 291 9.567776 TCTTCACAAAACAGGAATATTTACTCA 57.432 29.630 0.00 0.00 0.00 3.41
293 294 9.406828 GGTTCTTCACAAAACAGGAATATTTAC 57.593 33.333 0.00 0.00 0.00 2.01
294 295 9.362151 AGGTTCTTCACAAAACAGGAATATTTA 57.638 29.630 0.00 0.00 0.00 1.40
295 296 8.250143 AGGTTCTTCACAAAACAGGAATATTT 57.750 30.769 0.00 0.00 0.00 1.40
296 297 7.839680 AGGTTCTTCACAAAACAGGAATATT 57.160 32.000 0.00 0.00 0.00 1.28
297 298 8.934023 TTAGGTTCTTCACAAAACAGGAATAT 57.066 30.769 0.00 0.00 0.00 1.28
298 299 8.934023 ATTAGGTTCTTCACAAAACAGGAATA 57.066 30.769 0.00 0.00 0.00 1.75
299 300 7.839680 ATTAGGTTCTTCACAAAACAGGAAT 57.160 32.000 0.00 0.00 0.00 3.01
300 301 8.754991 TTATTAGGTTCTTCACAAAACAGGAA 57.245 30.769 0.00 0.00 0.00 3.36
301 302 8.215050 TCTTATTAGGTTCTTCACAAAACAGGA 58.785 33.333 0.00 0.00 0.00 3.86
302 303 8.391075 TCTTATTAGGTTCTTCACAAAACAGG 57.609 34.615 0.00 0.00 0.00 4.00
308 309 9.362151 ACCAATTTCTTATTAGGTTCTTCACAA 57.638 29.630 0.00 0.00 0.00 3.33
309 310 8.934023 ACCAATTTCTTATTAGGTTCTTCACA 57.066 30.769 0.00 0.00 0.00 3.58
310 311 8.175716 CGACCAATTTCTTATTAGGTTCTTCAC 58.824 37.037 0.00 0.00 0.00 3.18
311 312 8.098286 TCGACCAATTTCTTATTAGGTTCTTCA 58.902 33.333 0.00 0.00 0.00 3.02
312 313 8.488651 TCGACCAATTTCTTATTAGGTTCTTC 57.511 34.615 0.00 0.00 0.00 2.87
313 314 8.857694 TTCGACCAATTTCTTATTAGGTTCTT 57.142 30.769 0.00 0.00 0.00 2.52
314 315 8.319146 TCTTCGACCAATTTCTTATTAGGTTCT 58.681 33.333 0.00 0.00 0.00 3.01
315 316 8.488651 TCTTCGACCAATTTCTTATTAGGTTC 57.511 34.615 0.00 0.00 0.00 3.62
316 317 8.101419 ACTCTTCGACCAATTTCTTATTAGGTT 58.899 33.333 0.00 0.00 0.00 3.50
317 318 7.621796 ACTCTTCGACCAATTTCTTATTAGGT 58.378 34.615 0.00 0.00 0.00 3.08
318 319 9.765795 ATACTCTTCGACCAATTTCTTATTAGG 57.234 33.333 0.00 0.00 0.00 2.69
325 326 9.720769 TCTTTTTATACTCTTCGACCAATTTCT 57.279 29.630 0.00 0.00 0.00 2.52
328 329 9.720769 TCTTCTTTTTATACTCTTCGACCAATT 57.279 29.630 0.00 0.00 0.00 2.32
329 330 9.720769 TTCTTCTTTTTATACTCTTCGACCAAT 57.279 29.630 0.00 0.00 0.00 3.16
330 331 9.720769 ATTCTTCTTTTTATACTCTTCGACCAA 57.279 29.630 0.00 0.00 0.00 3.67
338 339 9.668497 AGCGGTTTATTCTTCTTTTTATACTCT 57.332 29.630 0.00 0.00 0.00 3.24
341 342 9.285770 CCAAGCGGTTTATTCTTCTTTTTATAC 57.714 33.333 0.00 0.00 0.00 1.47
342 343 9.233649 TCCAAGCGGTTTATTCTTCTTTTTATA 57.766 29.630 0.00 0.00 0.00 0.98
343 344 8.117813 TCCAAGCGGTTTATTCTTCTTTTTAT 57.882 30.769 0.00 0.00 0.00 1.40
344 345 7.513371 TCCAAGCGGTTTATTCTTCTTTTTA 57.487 32.000 0.00 0.00 0.00 1.52
345 346 6.399639 TCCAAGCGGTTTATTCTTCTTTTT 57.600 33.333 0.00 0.00 0.00 1.94
346 347 6.183360 TGTTCCAAGCGGTTTATTCTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
347 348 5.300792 TGTTCCAAGCGGTTTATTCTTCTTT 59.699 36.000 0.00 0.00 0.00 2.52
348 349 4.825085 TGTTCCAAGCGGTTTATTCTTCTT 59.175 37.500 0.00 0.00 0.00 2.52
349 350 4.394729 TGTTCCAAGCGGTTTATTCTTCT 58.605 39.130 0.00 0.00 0.00 2.85
350 351 4.215613 ACTGTTCCAAGCGGTTTATTCTTC 59.784 41.667 0.00 0.00 0.00 2.87
351 352 4.142038 ACTGTTCCAAGCGGTTTATTCTT 58.858 39.130 0.00 0.00 0.00 2.52
352 353 3.751518 ACTGTTCCAAGCGGTTTATTCT 58.248 40.909 0.00 0.00 0.00 2.40
353 354 5.123344 ACATACTGTTCCAAGCGGTTTATTC 59.877 40.000 0.00 0.00 0.00 1.75
354 355 5.007682 ACATACTGTTCCAAGCGGTTTATT 58.992 37.500 0.00 0.00 0.00 1.40
355 356 4.585879 ACATACTGTTCCAAGCGGTTTAT 58.414 39.130 0.00 0.00 0.00 1.40
356 357 4.010667 ACATACTGTTCCAAGCGGTTTA 57.989 40.909 0.00 0.00 0.00 2.01
357 358 2.858745 ACATACTGTTCCAAGCGGTTT 58.141 42.857 0.00 0.00 0.00 3.27
358 359 2.561478 ACATACTGTTCCAAGCGGTT 57.439 45.000 0.00 0.00 0.00 4.44
359 360 2.561478 AACATACTGTTCCAAGCGGT 57.439 45.000 0.00 0.00 35.27 5.68
360 361 3.915437 AAAACATACTGTTCCAAGCGG 57.085 42.857 0.00 0.00 40.14 5.52
361 362 3.980775 CCAAAAACATACTGTTCCAAGCG 59.019 43.478 0.00 0.00 40.14 4.68
362 363 3.740832 GCCAAAAACATACTGTTCCAAGC 59.259 43.478 0.00 0.00 40.14 4.01
363 364 4.039124 AGGCCAAAAACATACTGTTCCAAG 59.961 41.667 5.01 0.00 40.14 3.61
364 365 3.964031 AGGCCAAAAACATACTGTTCCAA 59.036 39.130 5.01 0.00 40.14 3.53
365 366 3.320541 CAGGCCAAAAACATACTGTTCCA 59.679 43.478 5.01 0.00 40.14 3.53
366 367 3.320826 ACAGGCCAAAAACATACTGTTCC 59.679 43.478 5.01 0.00 40.14 3.62
367 368 4.584327 ACAGGCCAAAAACATACTGTTC 57.416 40.909 5.01 0.00 40.14 3.18
368 369 6.946009 AGTATACAGGCCAAAAACATACTGTT 59.054 34.615 5.01 0.00 43.41 3.16
369 370 6.481643 AGTATACAGGCCAAAAACATACTGT 58.518 36.000 5.01 0.00 41.52 3.55
370 371 7.391148 AAGTATACAGGCCAAAAACATACTG 57.609 36.000 5.01 0.00 30.35 2.74
371 372 8.417273 AAAAGTATACAGGCCAAAAACATACT 57.583 30.769 5.01 6.11 30.95 2.12
480 481 1.913262 ACAGGGCGTCATGACTGGA 60.913 57.895 22.95 0.00 35.34 3.86
487 488 1.237285 GCAAACTCACAGGGCGTCAT 61.237 55.000 0.00 0.00 0.00 3.06
488 489 1.891919 GCAAACTCACAGGGCGTCA 60.892 57.895 0.00 0.00 0.00 4.35
489 490 2.617274 GGCAAACTCACAGGGCGTC 61.617 63.158 0.00 0.00 0.00 5.19
490 491 2.594592 GGCAAACTCACAGGGCGT 60.595 61.111 0.00 0.00 0.00 5.68
491 492 3.365265 GGGCAAACTCACAGGGCG 61.365 66.667 0.00 0.00 0.00 6.13
492 493 1.531602 AAGGGCAAACTCACAGGGC 60.532 57.895 0.00 0.00 0.00 5.19
493 494 0.178992 TCAAGGGCAAACTCACAGGG 60.179 55.000 0.00 0.00 0.00 4.45
494 495 1.915141 ATCAAGGGCAAACTCACAGG 58.085 50.000 0.00 0.00 0.00 4.00
495 496 3.379372 CCATATCAAGGGCAAACTCACAG 59.621 47.826 0.00 0.00 0.00 3.66
496 497 3.355378 CCATATCAAGGGCAAACTCACA 58.645 45.455 0.00 0.00 0.00 3.58
497 498 2.689983 CCCATATCAAGGGCAAACTCAC 59.310 50.000 0.00 0.00 39.96 3.51
498 499 3.017048 CCCATATCAAGGGCAAACTCA 57.983 47.619 0.00 0.00 39.96 3.41
825 826 1.634702 GAGAAGATCGTGCCTGACAC 58.365 55.000 0.00 0.00 46.45 3.67
826 827 0.532573 GGAGAAGATCGTGCCTGACA 59.467 55.000 0.00 0.00 0.00 3.58
827 828 0.179097 GGGAGAAGATCGTGCCTGAC 60.179 60.000 0.00 0.00 0.00 3.51
828 829 1.330655 GGGGAGAAGATCGTGCCTGA 61.331 60.000 3.90 0.00 0.00 3.86
829 830 1.144936 GGGGAGAAGATCGTGCCTG 59.855 63.158 3.90 0.00 0.00 4.85
830 831 2.427245 CGGGGAGAAGATCGTGCCT 61.427 63.158 3.90 0.00 0.00 4.75
831 832 2.107141 CGGGGAGAAGATCGTGCC 59.893 66.667 0.00 0.00 0.00 5.01
832 833 1.227002 GACGGGGAGAAGATCGTGC 60.227 63.158 0.00 0.00 35.91 5.34
836 837 0.664224 GACGAGACGGGGAGAAGATC 59.336 60.000 0.00 0.00 0.00 2.75
858 859 2.951745 GCGAGCCATGACGAGTCG 60.952 66.667 11.85 11.85 0.00 4.18
942 967 3.160047 ATAGCTCTGCAGGCGGCT 61.160 61.111 24.51 24.51 45.15 5.52
943 968 2.664518 GATAGCTCTGCAGGCGGC 60.665 66.667 15.13 15.49 45.13 6.53
1069 1102 3.562973 CAGGAAATCACAAGGGATGATCG 59.437 47.826 0.00 0.00 35.72 3.69
1077 1110 4.568359 CGTACTCATCAGGAAATCACAAGG 59.432 45.833 0.00 0.00 0.00 3.61
1124 1163 2.728839 GACGTCTGCACAGAAGAGAAAG 59.271 50.000 18.46 1.31 38.88 2.62
1126 1165 1.681264 TGACGTCTGCACAGAAGAGAA 59.319 47.619 17.92 2.95 38.88 2.87
1127 1166 1.318576 TGACGTCTGCACAGAAGAGA 58.681 50.000 17.92 3.57 38.88 3.10
1128 1167 2.257894 GATGACGTCTGCACAGAAGAG 58.742 52.381 17.92 8.57 38.88 2.85
1129 1168 1.401539 CGATGACGTCTGCACAGAAGA 60.402 52.381 17.92 0.00 38.88 2.87
1130 1169 0.987715 CGATGACGTCTGCACAGAAG 59.012 55.000 17.92 11.35 41.65 2.85
1146 1185 0.673333 TTGTCAATGCACTCGCCGAT 60.673 50.000 0.00 0.00 37.32 4.18
1493 1544 4.752879 GCGAGGGTTACGGCAGCA 62.753 66.667 0.00 0.00 0.00 4.41
1578 1637 1.419374 CTGGGTTTCGTCTCGTCTTG 58.581 55.000 0.00 0.00 0.00 3.02
1595 1654 4.106925 GCCAGGACCTCAGGGCTG 62.107 72.222 13.02 0.00 43.09 4.85
1663 1722 1.005394 AAAGTGCAGGGGTACGACG 60.005 57.895 0.00 0.00 34.50 5.12
1679 1738 3.287222 CGGGATTATGGCCTCTTTGAAA 58.713 45.455 3.32 0.00 0.00 2.69
1826 1885 3.253677 GGTCGGACAGTATCATCTCGATT 59.746 47.826 10.76 0.00 35.39 3.34
2132 2197 3.234630 CTTCCCGGACGGCTGTTCA 62.235 63.158 0.73 0.00 0.00 3.18
2217 2282 3.593442 ACCATTCTTGTTCTCCCAACA 57.407 42.857 0.00 0.00 0.00 3.33
2218 2283 4.584743 AGAAACCATTCTTGTTCTCCCAAC 59.415 41.667 0.00 0.00 43.43 3.77
2219 2284 4.803452 AGAAACCATTCTTGTTCTCCCAA 58.197 39.130 0.00 0.00 43.43 4.12
2227 2292 3.208747 ACACGGAGAAACCATTCTTGT 57.791 42.857 0.00 0.00 45.91 3.16
2244 2309 8.905103 AACAAATTAAACGCCTAATCATACAC 57.095 30.769 0.00 0.00 0.00 2.90
2284 2349 5.066246 CGTAAAAACAGAACCCAAAGTACCA 59.934 40.000 0.00 0.00 0.00 3.25
2326 2392 4.734398 ACAGACATCCAATCTCAGTCTC 57.266 45.455 0.00 0.00 37.45 3.36
2327 2393 6.805016 AATACAGACATCCAATCTCAGTCT 57.195 37.500 0.00 0.00 39.95 3.24
2373 2480 3.486383 AGTGGGCGAGATTTCTCAAAAA 58.514 40.909 8.23 0.00 43.00 1.94
2374 2481 3.140325 AGTGGGCGAGATTTCTCAAAA 57.860 42.857 8.23 0.00 43.00 2.44
2375 2482 2.859165 AGTGGGCGAGATTTCTCAAA 57.141 45.000 8.23 0.00 43.00 2.69
2376 2483 2.859165 AAGTGGGCGAGATTTCTCAA 57.141 45.000 8.23 0.00 43.00 3.02
2377 2484 2.859165 AAAGTGGGCGAGATTTCTCA 57.141 45.000 8.23 0.00 43.00 3.27
2378 2485 5.354234 TCAATAAAAGTGGGCGAGATTTCTC 59.646 40.000 0.00 0.00 39.55 2.87
2379 2486 5.253330 TCAATAAAAGTGGGCGAGATTTCT 58.747 37.500 0.00 0.00 0.00 2.52
2380 2487 5.560966 TCAATAAAAGTGGGCGAGATTTC 57.439 39.130 0.00 0.00 0.00 2.17
2381 2488 6.152661 TCAATCAATAAAAGTGGGCGAGATTT 59.847 34.615 0.00 0.00 0.00 2.17
2382 2489 5.652014 TCAATCAATAAAAGTGGGCGAGATT 59.348 36.000 0.00 0.00 0.00 2.40
2383 2490 5.192927 TCAATCAATAAAAGTGGGCGAGAT 58.807 37.500 0.00 0.00 0.00 2.75
2384 2491 4.584874 TCAATCAATAAAAGTGGGCGAGA 58.415 39.130 0.00 0.00 0.00 4.04
2385 2492 4.963276 TCAATCAATAAAAGTGGGCGAG 57.037 40.909 0.00 0.00 0.00 5.03
2386 2493 6.375736 TGTTATCAATCAATAAAAGTGGGCGA 59.624 34.615 0.00 0.00 0.00 5.54
2387 2494 6.559810 TGTTATCAATCAATAAAAGTGGGCG 58.440 36.000 0.00 0.00 0.00 6.13
2388 2495 8.819974 CATTGTTATCAATCAATAAAAGTGGGC 58.180 33.333 0.00 0.00 41.66 5.36
2389 2496 9.874205 ACATTGTTATCAATCAATAAAAGTGGG 57.126 29.630 0.00 0.00 41.66 4.61
2400 2507 9.898152 TGTACCTATGAACATTGTTATCAATCA 57.102 29.630 1.15 0.00 41.66 2.57
2402 2509 8.826710 CGTGTACCTATGAACATTGTTATCAAT 58.173 33.333 1.15 0.00 44.02 2.57
2403 2510 7.279090 CCGTGTACCTATGAACATTGTTATCAA 59.721 37.037 1.15 0.00 37.98 2.57
2404 2511 6.759356 CCGTGTACCTATGAACATTGTTATCA 59.241 38.462 1.15 0.00 0.00 2.15
2405 2512 6.759827 ACCGTGTACCTATGAACATTGTTATC 59.240 38.462 1.15 0.00 0.00 1.75
2406 2513 6.646267 ACCGTGTACCTATGAACATTGTTAT 58.354 36.000 1.15 0.28 0.00 1.89
2407 2514 6.040209 ACCGTGTACCTATGAACATTGTTA 57.960 37.500 1.15 0.00 0.00 2.41
2408 2515 4.901868 ACCGTGTACCTATGAACATTGTT 58.098 39.130 0.63 0.63 0.00 2.83
2409 2516 4.546829 ACCGTGTACCTATGAACATTGT 57.453 40.909 0.00 0.00 0.00 2.71
2410 2517 4.032445 CGAACCGTGTACCTATGAACATTG 59.968 45.833 0.00 0.00 0.00 2.82
2411 2518 4.178540 CGAACCGTGTACCTATGAACATT 58.821 43.478 0.00 0.00 0.00 2.71
2412 2519 3.429822 CCGAACCGTGTACCTATGAACAT 60.430 47.826 0.00 0.00 0.00 2.71
2413 2520 2.094597 CCGAACCGTGTACCTATGAACA 60.095 50.000 0.00 0.00 0.00 3.18
2414 2521 2.533266 CCGAACCGTGTACCTATGAAC 58.467 52.381 0.00 0.00 0.00 3.18
2415 2522 1.477700 CCCGAACCGTGTACCTATGAA 59.522 52.381 0.00 0.00 0.00 2.57
2416 2523 1.105457 CCCGAACCGTGTACCTATGA 58.895 55.000 0.00 0.00 0.00 2.15
2417 2524 0.819582 ACCCGAACCGTGTACCTATG 59.180 55.000 0.00 0.00 0.00 2.23
2418 2525 1.560505 AACCCGAACCGTGTACCTAT 58.439 50.000 0.00 0.00 0.00 2.57
2419 2526 1.816224 GTAACCCGAACCGTGTACCTA 59.184 52.381 0.00 0.00 0.00 3.08
2420 2527 0.603065 GTAACCCGAACCGTGTACCT 59.397 55.000 0.00 0.00 0.00 3.08
2421 2528 0.389817 GGTAACCCGAACCGTGTACC 60.390 60.000 0.00 0.00 0.00 3.34
2422 2529 3.122150 GGTAACCCGAACCGTGTAC 57.878 57.895 0.00 0.00 0.00 2.90
2435 2542 0.519961 GACATGCGTGGTTGGGTAAC 59.480 55.000 11.36 0.00 36.04 2.50
2436 2543 0.398696 AGACATGCGTGGTTGGGTAA 59.601 50.000 11.36 0.00 0.00 2.85
2437 2544 1.066716 GTAGACATGCGTGGTTGGGTA 60.067 52.381 11.36 0.00 0.00 3.69
2438 2545 0.321298 GTAGACATGCGTGGTTGGGT 60.321 55.000 11.36 0.00 0.00 4.51
2439 2546 1.024579 GGTAGACATGCGTGGTTGGG 61.025 60.000 11.36 0.00 0.00 4.12
2440 2547 0.036388 AGGTAGACATGCGTGGTTGG 60.036 55.000 11.36 0.00 0.00 3.77
2441 2548 2.665649 TAGGTAGACATGCGTGGTTG 57.334 50.000 11.36 0.00 0.00 3.77
2442 2549 3.332034 GTTTAGGTAGACATGCGTGGTT 58.668 45.455 11.36 0.07 0.00 3.67
2443 2550 2.354403 GGTTTAGGTAGACATGCGTGGT 60.354 50.000 11.36 0.00 0.00 4.16
2444 2551 2.093658 AGGTTTAGGTAGACATGCGTGG 60.094 50.000 11.36 0.00 0.00 4.94
2445 2552 3.247006 AGGTTTAGGTAGACATGCGTG 57.753 47.619 3.82 3.82 0.00 5.34
2446 2553 5.410355 TTTAGGTTTAGGTAGACATGCGT 57.590 39.130 0.00 0.00 0.00 5.24
2447 2554 6.920569 AATTTAGGTTTAGGTAGACATGCG 57.079 37.500 0.00 0.00 0.00 4.73
2448 2555 8.726870 TGTAATTTAGGTTTAGGTAGACATGC 57.273 34.615 0.00 0.00 0.00 4.06
2450 2557 9.392259 GCTTGTAATTTAGGTTTAGGTAGACAT 57.608 33.333 0.00 0.00 0.00 3.06
2451 2558 8.377034 TGCTTGTAATTTAGGTTTAGGTAGACA 58.623 33.333 0.00 0.00 0.00 3.41
2452 2559 8.782339 TGCTTGTAATTTAGGTTTAGGTAGAC 57.218 34.615 0.00 0.00 0.00 2.59
2453 2560 9.796180 TTTGCTTGTAATTTAGGTTTAGGTAGA 57.204 29.630 0.00 0.00 0.00 2.59
2454 2561 9.836076 GTTTGCTTGTAATTTAGGTTTAGGTAG 57.164 33.333 0.00 0.00 0.00 3.18
2455 2562 9.577222 AGTTTGCTTGTAATTTAGGTTTAGGTA 57.423 29.630 0.00 0.00 0.00 3.08
2456 2563 8.473358 AGTTTGCTTGTAATTTAGGTTTAGGT 57.527 30.769 0.00 0.00 0.00 3.08
2457 2564 9.191995 CAAGTTTGCTTGTAATTTAGGTTTAGG 57.808 33.333 0.00 0.00 45.18 2.69
2473 2580 4.009675 TCATAATCTCGCCAAGTTTGCTT 58.990 39.130 0.00 0.00 34.82 3.91
2474 2581 3.609853 TCATAATCTCGCCAAGTTTGCT 58.390 40.909 0.00 0.00 0.00 3.91
2475 2582 3.790123 GCTCATAATCTCGCCAAGTTTGC 60.790 47.826 0.00 0.00 0.00 3.68
2476 2583 3.242870 GGCTCATAATCTCGCCAAGTTTG 60.243 47.826 0.00 0.00 42.06 2.93
2477 2584 2.945668 GGCTCATAATCTCGCCAAGTTT 59.054 45.455 0.00 0.00 42.06 2.66
2478 2585 2.171448 AGGCTCATAATCTCGCCAAGTT 59.829 45.455 0.00 0.00 44.85 2.66
2479 2586 1.765314 AGGCTCATAATCTCGCCAAGT 59.235 47.619 0.00 0.00 44.85 3.16
2480 2587 2.411904 GAGGCTCATAATCTCGCCAAG 58.588 52.381 10.25 0.00 44.85 3.61
2481 2588 1.269778 CGAGGCTCATAATCTCGCCAA 60.270 52.381 15.95 0.00 44.85 4.52
2482 2589 0.315251 CGAGGCTCATAATCTCGCCA 59.685 55.000 15.95 0.00 44.85 5.69
2483 2590 0.598562 TCGAGGCTCATAATCTCGCC 59.401 55.000 15.95 0.00 46.72 5.54
2484 2591 2.423926 TTCGAGGCTCATAATCTCGC 57.576 50.000 15.95 0.00 46.72 5.03
2488 2595 9.399403 GGAATTTTAATTTCGAGGCTCATAATC 57.601 33.333 15.95 0.58 0.00 1.75
2489 2596 9.136323 AGGAATTTTAATTTCGAGGCTCATAAT 57.864 29.630 15.95 10.01 0.00 1.28
2490 2597 8.519799 AGGAATTTTAATTTCGAGGCTCATAA 57.480 30.769 15.95 8.00 0.00 1.90
2491 2598 9.621629 TTAGGAATTTTAATTTCGAGGCTCATA 57.378 29.630 15.95 0.00 0.00 2.15
2492 2599 8.519799 TTAGGAATTTTAATTTCGAGGCTCAT 57.480 30.769 15.95 0.00 0.00 2.90
2493 2600 7.931578 TTAGGAATTTTAATTTCGAGGCTCA 57.068 32.000 15.95 0.00 0.00 4.26
2494 2601 9.237846 CATTTAGGAATTTTAATTTCGAGGCTC 57.762 33.333 3.87 3.87 0.00 4.70
2495 2602 8.966868 TCATTTAGGAATTTTAATTTCGAGGCT 58.033 29.630 0.00 0.00 0.00 4.58
2496 2603 9.581099 TTCATTTAGGAATTTTAATTTCGAGGC 57.419 29.630 0.00 0.00 0.00 4.70
2525 2632 8.984764 CGCGTAGATCTTCTTATATATCTAGCT 58.015 37.037 0.00 0.00 32.94 3.32
2526 2633 8.767085 ACGCGTAGATCTTCTTATATATCTAGC 58.233 37.037 11.67 0.00 32.94 3.42
2528 2635 8.966194 CGACGCGTAGATCTTCTTATATATCTA 58.034 37.037 13.97 0.00 31.38 1.98
2529 2636 7.517101 GCGACGCGTAGATCTTCTTATATATCT 60.517 40.741 23.92 0.00 33.42 1.98
2530 2637 6.570789 GCGACGCGTAGATCTTCTTATATATC 59.429 42.308 23.92 0.00 0.00 1.63
2531 2638 6.420588 GCGACGCGTAGATCTTCTTATATAT 58.579 40.000 23.92 0.00 0.00 0.86
2532 2639 5.793675 GCGACGCGTAGATCTTCTTATATA 58.206 41.667 23.92 0.00 0.00 0.86
2533 2640 4.649977 GCGACGCGTAGATCTTCTTATAT 58.350 43.478 23.92 0.00 0.00 0.86
2534 2641 4.062853 GCGACGCGTAGATCTTCTTATA 57.937 45.455 23.92 0.00 0.00 0.98
2535 2642 2.918616 GCGACGCGTAGATCTTCTTAT 58.081 47.619 23.92 0.00 0.00 1.73
2536 2643 2.380102 GCGACGCGTAGATCTTCTTA 57.620 50.000 23.92 0.00 0.00 2.10
2537 2644 3.237522 GCGACGCGTAGATCTTCTT 57.762 52.632 23.92 0.00 0.00 2.52
2549 2656 1.299468 ATCCAAGAGATCGCGACGC 60.299 57.895 12.93 10.49 0.00 5.19
2550 2657 0.029433 TCATCCAAGAGATCGCGACG 59.971 55.000 12.93 0.00 30.59 5.12
2551 2658 2.430546 ATCATCCAAGAGATCGCGAC 57.569 50.000 12.93 5.67 30.59 5.19
2552 2659 2.095008 GCTATCATCCAAGAGATCGCGA 60.095 50.000 13.09 13.09 30.59 5.87
2553 2660 2.257894 GCTATCATCCAAGAGATCGCG 58.742 52.381 0.00 0.00 30.59 5.87
2554 2661 2.615869 GGCTATCATCCAAGAGATCGC 58.384 52.381 0.00 0.00 33.61 4.58
2555 2662 2.873609 CGGCTATCATCCAAGAGATCG 58.126 52.381 0.00 0.00 30.59 3.69
2556 2663 2.028658 TGCGGCTATCATCCAAGAGATC 60.029 50.000 0.00 0.00 30.59 2.75
2557 2664 1.973515 TGCGGCTATCATCCAAGAGAT 59.026 47.619 0.00 0.00 34.66 2.75
2558 2665 1.413118 TGCGGCTATCATCCAAGAGA 58.587 50.000 0.00 0.00 0.00 3.10
2559 2666 2.469274 ATGCGGCTATCATCCAAGAG 57.531 50.000 0.00 0.00 0.00 2.85
2560 2667 2.936919 AATGCGGCTATCATCCAAGA 57.063 45.000 0.00 0.00 0.00 3.02
2561 2668 3.005554 CCTAATGCGGCTATCATCCAAG 58.994 50.000 0.00 0.00 0.00 3.61
2562 2669 2.637382 TCCTAATGCGGCTATCATCCAA 59.363 45.455 0.00 0.00 0.00 3.53
2563 2670 2.028112 GTCCTAATGCGGCTATCATCCA 60.028 50.000 0.00 0.00 0.00 3.41
2564 2671 2.622436 GTCCTAATGCGGCTATCATCC 58.378 52.381 0.00 0.00 0.00 3.51
2565 2672 2.234908 AGGTCCTAATGCGGCTATCATC 59.765 50.000 0.00 0.00 0.00 2.92
2566 2673 2.234908 GAGGTCCTAATGCGGCTATCAT 59.765 50.000 0.00 0.00 0.00 2.45
2567 2674 1.618837 GAGGTCCTAATGCGGCTATCA 59.381 52.381 0.00 0.00 0.00 2.15
2568 2675 1.066787 GGAGGTCCTAATGCGGCTATC 60.067 57.143 0.00 0.00 0.00 2.08
2569 2676 0.977395 GGAGGTCCTAATGCGGCTAT 59.023 55.000 0.00 0.00 0.00 2.97
2570 2677 0.105658 AGGAGGTCCTAATGCGGCTA 60.106 55.000 0.00 0.00 46.48 3.93
2571 2678 1.383248 AGGAGGTCCTAATGCGGCT 60.383 57.895 0.00 0.00 46.48 5.52
2572 2679 1.227674 CAGGAGGTCCTAATGCGGC 60.228 63.158 0.00 0.00 46.65 6.53
2573 2680 0.105039 GACAGGAGGTCCTAATGCGG 59.895 60.000 0.00 0.00 46.65 5.69
2574 2681 3.669354 GACAGGAGGTCCTAATGCG 57.331 57.895 0.00 0.00 46.65 4.73
2582 2689 1.609794 AACGAGGGGACAGGAGGTC 60.610 63.158 0.00 0.00 46.20 3.85
2583 2690 1.913762 CAACGAGGGGACAGGAGGT 60.914 63.158 0.00 0.00 0.00 3.85
2584 2691 0.978146 ATCAACGAGGGGACAGGAGG 60.978 60.000 0.00 0.00 0.00 4.30
2585 2692 0.176680 CATCAACGAGGGGACAGGAG 59.823 60.000 0.00 0.00 0.00 3.69
2586 2693 0.544357 ACATCAACGAGGGGACAGGA 60.544 55.000 0.00 0.00 0.00 3.86
2587 2694 0.108138 GACATCAACGAGGGGACAGG 60.108 60.000 0.00 0.00 0.00 4.00
2588 2695 0.898320 AGACATCAACGAGGGGACAG 59.102 55.000 0.00 0.00 0.00 3.51
2589 2696 1.348064 AAGACATCAACGAGGGGACA 58.652 50.000 0.00 0.00 0.00 4.02
2590 2697 2.474410 AAAGACATCAACGAGGGGAC 57.526 50.000 0.00 0.00 0.00 4.46
2591 2698 3.307199 GGTAAAAGACATCAACGAGGGGA 60.307 47.826 0.00 0.00 0.00 4.81
2592 2699 3.007635 GGTAAAAGACATCAACGAGGGG 58.992 50.000 0.00 0.00 0.00 4.79
2593 2700 3.435671 GTGGTAAAAGACATCAACGAGGG 59.564 47.826 0.00 0.00 0.00 4.30
2594 2701 4.315803 AGTGGTAAAAGACATCAACGAGG 58.684 43.478 0.00 0.00 0.00 4.63
2595 2702 5.696724 AGAAGTGGTAAAAGACATCAACGAG 59.303 40.000 0.00 0.00 0.00 4.18
2596 2703 5.607477 AGAAGTGGTAAAAGACATCAACGA 58.393 37.500 0.00 0.00 0.00 3.85
2597 2704 5.924475 AGAAGTGGTAAAAGACATCAACG 57.076 39.130 0.00 0.00 0.00 4.10
2598 2705 6.128254 GCCTAGAAGTGGTAAAAGACATCAAC 60.128 42.308 0.00 0.00 0.00 3.18
2599 2706 5.938125 GCCTAGAAGTGGTAAAAGACATCAA 59.062 40.000 0.00 0.00 0.00 2.57
2600 2707 5.012664 TGCCTAGAAGTGGTAAAAGACATCA 59.987 40.000 0.00 0.00 0.00 3.07
2601 2708 5.488341 TGCCTAGAAGTGGTAAAAGACATC 58.512 41.667 0.00 0.00 0.00 3.06
2602 2709 5.013183 ACTGCCTAGAAGTGGTAAAAGACAT 59.987 40.000 0.00 0.00 0.00 3.06
2603 2710 4.347000 ACTGCCTAGAAGTGGTAAAAGACA 59.653 41.667 0.00 0.00 0.00 3.41
2604 2711 4.895961 ACTGCCTAGAAGTGGTAAAAGAC 58.104 43.478 0.00 0.00 0.00 3.01
2605 2712 4.838986 AGACTGCCTAGAAGTGGTAAAAGA 59.161 41.667 3.08 0.00 0.00 2.52
2606 2713 4.932200 CAGACTGCCTAGAAGTGGTAAAAG 59.068 45.833 3.08 0.00 0.00 2.27
2607 2714 4.591498 TCAGACTGCCTAGAAGTGGTAAAA 59.409 41.667 0.00 0.00 0.00 1.52
2608 2715 4.157246 TCAGACTGCCTAGAAGTGGTAAA 58.843 43.478 0.00 0.00 0.00 2.01
2609 2716 3.774734 TCAGACTGCCTAGAAGTGGTAA 58.225 45.455 0.00 0.00 0.00 2.85
2610 2717 3.451402 TCAGACTGCCTAGAAGTGGTA 57.549 47.619 0.00 0.00 0.00 3.25
2611 2718 2.310779 TCAGACTGCCTAGAAGTGGT 57.689 50.000 0.00 0.00 0.00 4.16
2612 2719 2.741228 GCATCAGACTGCCTAGAAGTGG 60.741 54.545 0.00 0.00 36.10 4.00
2613 2720 2.168106 AGCATCAGACTGCCTAGAAGTG 59.832 50.000 0.00 0.00 43.33 3.16
2614 2721 2.465813 AGCATCAGACTGCCTAGAAGT 58.534 47.619 0.00 0.00 43.33 3.01
2615 2722 3.636300 AGTAGCATCAGACTGCCTAGAAG 59.364 47.826 0.00 0.00 43.33 2.85
2616 2723 3.636679 AGTAGCATCAGACTGCCTAGAA 58.363 45.455 0.00 0.00 43.33 2.10
2617 2724 3.304911 AGTAGCATCAGACTGCCTAGA 57.695 47.619 0.00 0.00 43.33 2.43
2618 2725 3.254657 GGTAGTAGCATCAGACTGCCTAG 59.745 52.174 0.00 0.00 43.09 3.02
2619 2726 3.223435 GGTAGTAGCATCAGACTGCCTA 58.777 50.000 0.00 0.00 43.09 3.93
2620 2727 2.035632 GGTAGTAGCATCAGACTGCCT 58.964 52.381 0.00 0.00 43.09 4.75
2621 2728 1.757118 TGGTAGTAGCATCAGACTGCC 59.243 52.381 0.00 2.57 45.68 4.85
2622 2729 3.742433 ATGGTAGTAGCATCAGACTGC 57.258 47.619 9.06 0.00 42.62 4.40
2623 2730 7.040132 TCAGAATATGGTAGTAGCATCAGACTG 60.040 40.741 17.80 19.34 37.51 3.51
2624 2731 7.007116 TCAGAATATGGTAGTAGCATCAGACT 58.993 38.462 17.80 10.61 37.51 3.24
2625 2732 7.220741 TCAGAATATGGTAGTAGCATCAGAC 57.779 40.000 17.80 8.78 37.51 3.51
2626 2733 7.839680 TTCAGAATATGGTAGTAGCATCAGA 57.160 36.000 17.80 5.44 37.51 3.27
2643 2750 9.878667 CTAGCAGATGATCTTGATATTCAGAAT 57.121 33.333 0.20 0.20 0.00 2.40
2644 2751 8.312564 CCTAGCAGATGATCTTGATATTCAGAA 58.687 37.037 0.00 0.00 0.00 3.02
2645 2752 7.093421 CCCTAGCAGATGATCTTGATATTCAGA 60.093 40.741 0.00 0.00 0.00 3.27
2646 2753 7.042950 CCCTAGCAGATGATCTTGATATTCAG 58.957 42.308 0.00 0.00 0.00 3.02
2647 2754 6.575847 GCCCTAGCAGATGATCTTGATATTCA 60.576 42.308 0.00 0.00 39.53 2.57
2648 2755 5.816777 GCCCTAGCAGATGATCTTGATATTC 59.183 44.000 0.00 0.00 39.53 1.75
2649 2756 5.250082 TGCCCTAGCAGATGATCTTGATATT 59.750 40.000 0.00 0.00 46.52 1.28
2650 2757 4.781621 TGCCCTAGCAGATGATCTTGATAT 59.218 41.667 0.00 0.00 46.52 1.63
2651 2758 4.162651 TGCCCTAGCAGATGATCTTGATA 58.837 43.478 0.00 0.00 46.52 2.15
2652 2759 2.977580 TGCCCTAGCAGATGATCTTGAT 59.022 45.455 0.00 0.00 46.52 2.57
2653 2760 2.401568 TGCCCTAGCAGATGATCTTGA 58.598 47.619 0.00 0.00 46.52 3.02
2654 2761 2.924757 TGCCCTAGCAGATGATCTTG 57.075 50.000 0.00 0.00 46.52 3.02
2665 2772 1.153066 GGGAAGCTCTTGCCCTAGC 60.153 63.158 8.76 0.00 44.16 3.42
2671 2778 1.807886 CATGCAGGGAAGCTCTTGC 59.192 57.895 2.89 2.89 40.05 4.01
2672 2779 0.963856 TGCATGCAGGGAAGCTCTTG 60.964 55.000 18.46 0.00 34.99 3.02
2673 2780 0.251474 TTGCATGCAGGGAAGCTCTT 60.251 50.000 21.50 0.00 34.99 2.85
2674 2781 0.251474 TTTGCATGCAGGGAAGCTCT 60.251 50.000 21.50 0.00 34.99 4.09
2675 2782 0.604578 TTTTGCATGCAGGGAAGCTC 59.395 50.000 21.50 0.00 34.99 4.09
2676 2783 0.606604 CTTTTGCATGCAGGGAAGCT 59.393 50.000 21.50 0.00 34.99 3.74
2677 2784 0.319405 ACTTTTGCATGCAGGGAAGC 59.681 50.000 26.81 0.00 0.00 3.86
2678 2785 2.825861 AACTTTTGCATGCAGGGAAG 57.174 45.000 25.95 25.95 0.00 3.46
2679 2786 2.545532 CGAAACTTTTGCATGCAGGGAA 60.546 45.455 21.50 15.33 0.00 3.97
2680 2787 1.000385 CGAAACTTTTGCATGCAGGGA 60.000 47.619 21.50 8.41 0.00 4.20
2681 2788 1.000385 TCGAAACTTTTGCATGCAGGG 60.000 47.619 21.50 16.30 0.00 4.45
2682 2789 2.322161 CTCGAAACTTTTGCATGCAGG 58.678 47.619 21.50 16.64 0.00 4.85
2683 2790 1.717645 GCTCGAAACTTTTGCATGCAG 59.282 47.619 21.50 12.23 0.00 4.41
2684 2791 1.066757 TGCTCGAAACTTTTGCATGCA 59.933 42.857 18.46 18.46 0.00 3.96
2685 2792 1.769733 TGCTCGAAACTTTTGCATGC 58.230 45.000 11.82 11.82 0.00 4.06
2686 2793 3.567530 TGATGCTCGAAACTTTTGCATG 58.432 40.909 10.36 0.00 43.28 4.06
2687 2794 3.921119 TGATGCTCGAAACTTTTGCAT 57.079 38.095 5.82 5.82 45.48 3.96
2688 2795 3.921119 ATGATGCTCGAAACTTTTGCA 57.079 38.095 0.00 0.00 38.05 4.08
2689 2796 3.365820 CCAATGATGCTCGAAACTTTTGC 59.634 43.478 0.00 0.00 0.00 3.68
2690 2797 4.797471 TCCAATGATGCTCGAAACTTTTG 58.203 39.130 0.00 0.00 0.00 2.44
2691 2798 5.183713 TGATCCAATGATGCTCGAAACTTTT 59.816 36.000 0.00 0.00 0.00 2.27
2692 2799 4.701651 TGATCCAATGATGCTCGAAACTTT 59.298 37.500 0.00 0.00 0.00 2.66
2693 2800 4.095483 GTGATCCAATGATGCTCGAAACTT 59.905 41.667 0.00 0.00 0.00 2.66
2694 2801 3.624861 GTGATCCAATGATGCTCGAAACT 59.375 43.478 0.00 0.00 0.00 2.66
2695 2802 3.544834 CGTGATCCAATGATGCTCGAAAC 60.545 47.826 0.00 0.00 0.00 2.78
2696 2803 2.609002 CGTGATCCAATGATGCTCGAAA 59.391 45.455 0.00 0.00 0.00 3.46
2697 2804 2.159114 TCGTGATCCAATGATGCTCGAA 60.159 45.455 0.00 0.00 0.00 3.71
2698 2805 1.408702 TCGTGATCCAATGATGCTCGA 59.591 47.619 0.00 0.00 0.00 4.04
2699 2806 1.791204 CTCGTGATCCAATGATGCTCG 59.209 52.381 0.00 0.00 0.00 5.03
2700 2807 2.831333 ACTCGTGATCCAATGATGCTC 58.169 47.619 0.00 0.00 0.00 4.26
2701 2808 2.996249 ACTCGTGATCCAATGATGCT 57.004 45.000 0.00 0.00 0.00 3.79
2702 2809 2.289002 GGAACTCGTGATCCAATGATGC 59.711 50.000 8.72 0.00 35.49 3.91
2703 2810 3.801698 AGGAACTCGTGATCCAATGATG 58.198 45.455 15.09 0.00 37.58 3.07
2719 2826 3.550436 GGACGTATCATCTTCCGAGGAAC 60.550 52.174 0.00 0.00 33.18 3.62
2720 2827 2.621998 GGACGTATCATCTTCCGAGGAA 59.378 50.000 4.34 4.34 33.18 3.36
2721 2828 2.228059 GGACGTATCATCTTCCGAGGA 58.772 52.381 0.00 0.00 34.07 3.71
2722 2829 1.954382 TGGACGTATCATCTTCCGAGG 59.046 52.381 0.00 0.00 0.00 4.63
2723 2830 3.924918 ATGGACGTATCATCTTCCGAG 57.075 47.619 0.00 0.00 0.00 4.63
2724 2831 4.665833 AAATGGACGTATCATCTTCCGA 57.334 40.909 4.62 0.00 0.00 4.55
2725 2832 5.751509 TGTAAAATGGACGTATCATCTTCCG 59.248 40.000 4.62 0.00 0.00 4.30
2728 2835 8.777413 CATGATGTAAAATGGACGTATCATCTT 58.223 33.333 4.62 0.86 33.04 2.40
2731 2838 6.712095 AGCATGATGTAAAATGGACGTATCAT 59.288 34.615 0.00 0.00 34.99 2.45
2973 3081 4.260538 CCTGATGTATTTCTTTCGCTCAGC 60.261 45.833 0.00 0.00 0.00 4.26
3000 3108 3.238497 TCGTGGACAGGTGGTGGG 61.238 66.667 0.00 0.00 0.00 4.61
3079 3188 6.483307 CCTGGACGAAAGATTTCATATAGCAA 59.517 38.462 6.16 0.00 37.01 3.91
3219 3329 1.709994 GGCGATGATTTCCCCCTCCT 61.710 60.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.