Multiple sequence alignment - TraesCS6D01G172200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G172200 chr6D 100.000 3476 0 0 1 3476 158816419 158819894 0.000000e+00 6420.0
1 TraesCS6D01G172200 chr6D 100.000 164 0 0 1707 1870 340107841 340107678 1.570000e-78 303.0
2 TraesCS6D01G172200 chr6B 96.611 1977 46 3 511 2487 288048690 288046735 0.000000e+00 3260.0
3 TraesCS6D01G172200 chr6B 93.097 507 33 2 1 505 288049748 288049242 0.000000e+00 741.0
4 TraesCS6D01G172200 chr6B 90.196 408 33 6 2743 3150 288045513 288045113 3.070000e-145 525.0
5 TraesCS6D01G172200 chr6B 89.831 118 6 4 2493 2608 288045870 288045757 2.800000e-31 147.0
6 TraesCS6D01G172200 chr6B 94.805 77 4 0 2660 2736 288045754 288045678 1.690000e-23 121.0
7 TraesCS6D01G172200 chr6B 92.308 39 3 0 2619 2657 715204297 715204259 4.850000e-04 56.5
8 TraesCS6D01G172200 chr6A 94.720 1932 48 11 707 2608 216461694 216463601 0.000000e+00 2953.0
9 TraesCS6D01G172200 chr6A 88.227 705 43 14 2660 3325 216463604 216464307 0.000000e+00 806.0
10 TraesCS6D01G172200 chr6A 90.779 488 41 3 2660 3147 216466078 216466561 0.000000e+00 649.0
11 TraesCS6D01G172200 chr6A 82.152 381 39 6 1 376 216444964 216445320 2.030000e-77 300.0
12 TraesCS6D01G172200 chr6A 81.448 221 36 3 2269 2486 216465037 216465255 3.570000e-40 176.0
13 TraesCS6D01G172200 chr5D 98.780 164 2 0 1707 1870 254526838 254526675 3.390000e-75 292.0
14 TraesCS6D01G172200 chr5D 98.171 164 3 0 1707 1870 513660661 513660824 1.580000e-73 287.0
15 TraesCS6D01G172200 chr5D 87.786 131 11 5 3348 3476 333230485 333230612 7.770000e-32 148.0
16 TraesCS6D01G172200 chr5D 93.478 46 2 1 2808 2853 428416600 428416644 2.240000e-07 67.6
17 TraesCS6D01G172200 chr5D 92.500 40 2 1 2814 2853 285558509 285558471 4.850000e-04 56.5
18 TraesCS6D01G172200 chr7D 98.276 116 2 0 1755 1870 109949444 109949329 1.640000e-48 204.0
19 TraesCS6D01G172200 chr7D 76.856 229 43 6 1 222 161059596 161059371 1.690000e-23 121.0
20 TraesCS6D01G172200 chr5A 89.437 142 12 3 3337 3476 142746278 142746138 3.570000e-40 176.0
21 TraesCS6D01G172200 chr2D 100.000 91 0 0 1707 1797 431382421 431382511 5.970000e-38 169.0
22 TraesCS6D01G172200 chr2D 88.732 142 7 5 3341 3476 148367356 148367218 7.720000e-37 165.0
23 TraesCS6D01G172200 chr2D 94.444 36 2 0 3272 3307 295243792 295243757 4.850000e-04 56.5
24 TraesCS6D01G172200 chr2B 88.732 142 10 2 3340 3476 796633628 796633768 5.970000e-38 169.0
25 TraesCS6D01G172200 chr3D 86.429 140 15 4 3340 3476 350677140 350677002 2.160000e-32 150.0
26 TraesCS6D01G172200 chr3D 84.507 142 15 6 3340 3476 567669860 567669721 2.180000e-27 134.0
27 TraesCS6D01G172200 chr3D 88.462 52 6 0 3256 3307 578898996 578898945 2.900000e-06 63.9
28 TraesCS6D01G172200 chr3D 87.500 56 2 4 2801 2853 10332104 10332157 3.750000e-05 60.2
29 TraesCS6D01G172200 chr3A 86.861 137 15 3 3340 3475 583745952 583746086 2.160000e-32 150.0
30 TraesCS6D01G172200 chr3B 85.235 149 16 6 3332 3475 531562968 531563115 7.770000e-32 148.0
31 TraesCS6D01G172200 chr3B 88.000 50 6 0 3145 3194 192032895 192032846 3.750000e-05 60.2
32 TraesCS6D01G172200 chr3B 96.970 33 1 0 3153 3185 192031728 192031696 4.850000e-04 56.5
33 TraesCS6D01G172200 chr4D 83.226 155 13 7 3328 3476 495106947 495107094 2.820000e-26 130.0
34 TraesCS6D01G172200 chr7A 79.825 114 21 2 3196 3307 712664193 712664080 8.000000e-12 82.4
35 TraesCS6D01G172200 chr7B 78.761 113 22 2 3197 3307 611722391 611722279 1.340000e-09 75.0
36 TraesCS6D01G172200 chr4A 78.947 114 20 4 3197 3307 740527322 740527210 1.340000e-09 75.0
37 TraesCS6D01G172200 chr4A 78.947 114 20 4 3197 3307 740531789 740531677 1.340000e-09 75.0
38 TraesCS6D01G172200 chr4A 78.070 114 21 4 3197 3307 740522853 740522741 6.230000e-08 69.4
39 TraesCS6D01G172200 chr5B 95.556 45 1 1 2809 2853 709244084 709244041 1.730000e-08 71.3
40 TraesCS6D01G172200 chr5B 92.500 40 2 1 2814 2853 323714580 323714542 4.850000e-04 56.5
41 TraesCS6D01G172200 chr4B 90.000 50 4 1 2809 2858 41838062 41838110 2.900000e-06 63.9
42 TraesCS6D01G172200 chr2A 94.444 36 2 0 3272 3307 362754926 362754891 4.850000e-04 56.5
43 TraesCS6D01G172200 chr2A 94.444 36 2 0 3272 3307 362779107 362779072 4.850000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G172200 chr6D 158816419 158819894 3475 False 6420.0 6420 100.0000 1 3476 1 chr6D.!!$F1 3475
1 TraesCS6D01G172200 chr6B 288045113 288049748 4635 True 958.8 3260 92.9080 1 3150 5 chr6B.!!$R2 3149
2 TraesCS6D01G172200 chr6A 216461694 216466561 4867 False 1146.0 2953 88.7935 707 3325 4 chr6A.!!$F2 2618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 1167 0.683504 TCGAGGCCCTGAGTTCCTAC 60.684 60.0 0.0 0.0 0.00 3.18 F
927 1506 0.972883 AGCTGGTCACTCTCCAAGAC 59.027 55.0 0.0 0.0 34.35 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2380 1.210545 TTGTCGGCGTCGTTGAGAAC 61.211 55.0 10.18 0.0 37.69 3.01 R
2642 4090 0.392595 CAAGTTACTTCCGCCCTCCC 60.393 60.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.797353 ATCCGTGCCCGCATCCTT 61.797 61.111 0.00 0.00 0.00 3.36
74 75 3.432517 CTCTCTCCCGAGTGCAAAG 57.567 57.895 0.00 0.00 38.45 2.77
130 131 2.230130 AGAGGAGAAGGAGGACACTG 57.770 55.000 0.00 0.00 0.00 3.66
133 134 1.148027 AGGAGAAGGAGGACACTGACA 59.852 52.381 0.00 0.00 0.00 3.58
141 142 1.546476 GAGGACACTGACAAGTCGGAT 59.454 52.381 15.51 3.50 39.24 4.18
143 144 2.755655 AGGACACTGACAAGTCGGATAG 59.244 50.000 15.51 7.48 39.24 2.08
163 164 0.749049 CCTCGGTGATGAGCAGATCA 59.251 55.000 0.00 0.00 43.70 2.92
172 173 2.879002 TGAGCAGATCAGGTTCGATC 57.121 50.000 0.00 0.00 41.85 3.69
190 191 3.675225 CGATCCATATTGCGTCTTCGAAT 59.325 43.478 0.00 0.00 39.71 3.34
201 202 2.027688 CGTCTTCGAATGTTACTTCCGC 59.972 50.000 0.00 0.00 39.71 5.54
204 205 1.621107 TCGAATGTTACTTCCGCGAC 58.379 50.000 8.23 0.00 0.00 5.19
210 211 2.129607 TGTTACTTCCGCGACAAAGAC 58.870 47.619 8.23 4.42 0.00 3.01
219 220 1.154225 CGACAAAGACGCCAATGGC 60.154 57.895 15.52 15.52 46.75 4.40
236 237 1.389609 GGCAAGGGCAGTCATGGATG 61.390 60.000 0.00 0.00 43.71 3.51
256 257 6.994496 TGGATGATCTTTGTCCATAGCTTTAG 59.006 38.462 0.00 0.00 37.12 1.85
307 310 4.090761 AGTCCGATGGCATGTATTGATT 57.909 40.909 3.81 0.00 0.00 2.57
359 362 4.142773 CGGTAGTTTACGATGCATTTGGTT 60.143 41.667 0.00 0.00 0.00 3.67
398 401 6.618287 TTTGCTAAATCAGGTATCCGATTG 57.382 37.500 0.00 0.00 31.26 2.67
453 456 1.392510 GCACGTCCTCGGATGTTTAAC 59.607 52.381 8.06 0.00 41.88 2.01
477 480 1.737838 CAGATTTGCTAACTCCGGCA 58.262 50.000 0.00 0.00 36.62 5.69
497 500 1.620819 AGTACTTGCCAGTGAGGTGAG 59.379 52.381 0.00 0.00 40.61 3.51
501 504 1.483595 TTGCCAGTGAGGTGAGGGAG 61.484 60.000 0.00 0.00 40.61 4.30
505 508 2.689034 GTGAGGTGAGGGAGGGGG 60.689 72.222 0.00 0.00 0.00 5.40
615 1164 2.896443 CTCGAGGCCCTGAGTTCC 59.104 66.667 12.61 0.00 0.00 3.62
618 1167 0.683504 TCGAGGCCCTGAGTTCCTAC 60.684 60.000 0.00 0.00 0.00 3.18
633 1182 7.254852 TGAGTTCCTACATTTTTGTTTGTGTC 58.745 34.615 0.00 0.00 0.00 3.67
641 1190 9.488124 CTACATTTTTGTTTGTGTCCAAATTTG 57.512 29.630 11.40 11.40 42.26 2.32
648 1197 2.950781 TGTGTCCAAATTTGCCCTACA 58.049 42.857 12.92 11.12 0.00 2.74
666 1215 6.822170 GCCCTACAAACAACTAGTTAGCTAAT 59.178 38.462 9.88 1.82 40.26 1.73
857 1436 3.058160 CCTTGGCCCTTGAGCACG 61.058 66.667 0.00 0.00 0.00 5.34
877 1456 3.047796 CGGTAGAACCATGTATGTACGC 58.952 50.000 0.00 0.00 38.47 4.42
883 1462 2.108168 ACCATGTATGTACGCACCTCT 58.892 47.619 0.00 0.00 0.00 3.69
924 1503 1.620819 GAAGAGCTGGTCACTCTCCAA 59.379 52.381 9.78 0.00 43.71 3.53
925 1504 1.265236 AGAGCTGGTCACTCTCCAAG 58.735 55.000 9.78 0.00 40.52 3.61
926 1505 1.203112 AGAGCTGGTCACTCTCCAAGA 60.203 52.381 9.78 0.00 40.52 3.02
927 1506 0.972883 AGCTGGTCACTCTCCAAGAC 59.027 55.000 0.00 0.00 34.35 3.01
931 1510 3.523806 GTCACTCTCCAAGACCAGC 57.476 57.895 0.00 0.00 0.00 4.85
932 1511 0.972883 GTCACTCTCCAAGACCAGCT 59.027 55.000 0.00 0.00 0.00 4.24
933 1512 2.171840 GTCACTCTCCAAGACCAGCTA 58.828 52.381 0.00 0.00 0.00 3.32
934 1513 2.094442 GTCACTCTCCAAGACCAGCTAC 60.094 54.545 0.00 0.00 0.00 3.58
974 1553 1.337447 GCTGAGCATTGCATTTGGTGT 60.337 47.619 11.91 0.00 0.00 4.16
990 1569 1.000145 GTGTTAGACTAGCGCTTGCC 59.000 55.000 18.68 6.01 40.41 4.52
1240 1819 4.402528 CCGGGCCGTTCATCACCA 62.403 66.667 26.32 0.00 0.00 4.17
2014 2593 4.152625 GCAGCGACATCACCGTGC 62.153 66.667 0.00 0.00 0.00 5.34
2427 3006 1.320344 ACGTGAAGGAGATGCCGCTA 61.320 55.000 0.00 0.00 43.43 4.26
2469 3048 3.970410 CTGACCAGGGCCAAGGCA 61.970 66.667 13.87 8.03 44.11 4.75
2483 3062 3.034635 CCAAGGCAGAGTGACCTATAGT 58.965 50.000 0.00 0.00 34.31 2.12
2513 3959 7.415989 GCAGTACTGTACTACTATAGTGCCAAA 60.416 40.741 23.44 0.00 40.17 3.28
2549 3997 4.114794 GCCACAATCCACAATAATTGCTC 58.885 43.478 0.00 0.00 36.54 4.26
2612 4060 8.931385 ATCTGCATGATTTGGTTTTTACATAC 57.069 30.769 0.00 0.00 29.59 2.39
2613 4061 7.319646 TCTGCATGATTTGGTTTTTACATACC 58.680 34.615 0.00 0.00 34.93 2.73
2614 4062 6.096036 TGCATGATTTGGTTTTTACATACCG 58.904 36.000 0.00 0.00 37.23 4.02
2615 4063 6.096695 GCATGATTTGGTTTTTACATACCGT 58.903 36.000 0.00 0.00 37.23 4.83
2616 4064 6.588373 GCATGATTTGGTTTTTACATACCGTT 59.412 34.615 0.00 0.00 37.23 4.44
2617 4065 7.201401 GCATGATTTGGTTTTTACATACCGTTC 60.201 37.037 0.00 0.00 37.23 3.95
2618 4066 7.273320 TGATTTGGTTTTTACATACCGTTCA 57.727 32.000 0.00 0.00 37.23 3.18
2619 4067 7.364200 TGATTTGGTTTTTACATACCGTTCAG 58.636 34.615 0.00 0.00 37.23 3.02
2620 4068 6.696441 TTTGGTTTTTACATACCGTTCAGT 57.304 33.333 0.00 0.00 37.23 3.41
2621 4069 5.676532 TGGTTTTTACATACCGTTCAGTG 57.323 39.130 0.00 0.00 37.23 3.66
2622 4070 5.124645 TGGTTTTTACATACCGTTCAGTGT 58.875 37.500 0.00 0.00 37.23 3.55
2623 4071 6.286758 TGGTTTTTACATACCGTTCAGTGTA 58.713 36.000 0.00 0.00 37.23 2.90
2624 4072 6.765036 TGGTTTTTACATACCGTTCAGTGTAA 59.235 34.615 0.00 0.00 37.23 2.41
2625 4073 7.281774 TGGTTTTTACATACCGTTCAGTGTAAA 59.718 33.333 5.68 5.68 42.18 2.01
2626 4074 8.127954 GGTTTTTACATACCGTTCAGTGTAAAA 58.872 33.333 14.63 14.63 46.65 1.52
2629 4077 5.934935 ACATACCGTTCAGTGTAAAAAGG 57.065 39.130 0.00 0.00 0.00 3.11
2630 4078 5.370679 ACATACCGTTCAGTGTAAAAAGGT 58.629 37.500 6.06 6.06 39.90 3.50
2631 4079 5.824097 ACATACCGTTCAGTGTAAAAAGGTT 59.176 36.000 6.09 0.00 38.11 3.50
2632 4080 4.888038 ACCGTTCAGTGTAAAAAGGTTC 57.112 40.909 0.00 0.00 34.19 3.62
2633 4081 4.520179 ACCGTTCAGTGTAAAAAGGTTCT 58.480 39.130 0.00 0.00 34.19 3.01
2634 4082 4.945543 ACCGTTCAGTGTAAAAAGGTTCTT 59.054 37.500 0.00 0.00 34.19 2.52
2635 4083 6.114767 ACCGTTCAGTGTAAAAAGGTTCTTA 58.885 36.000 0.00 0.00 34.19 2.10
2636 4084 6.769341 ACCGTTCAGTGTAAAAAGGTTCTTAT 59.231 34.615 0.00 0.00 34.19 1.73
2637 4085 7.933033 ACCGTTCAGTGTAAAAAGGTTCTTATA 59.067 33.333 0.00 0.00 34.19 0.98
2638 4086 8.943002 CCGTTCAGTGTAAAAAGGTTCTTATAT 58.057 33.333 0.00 0.00 0.00 0.86
2649 4097 5.780958 AGGTTCTTATATTATGGGAGGGC 57.219 43.478 0.00 0.00 0.00 5.19
2650 4098 4.225267 AGGTTCTTATATTATGGGAGGGCG 59.775 45.833 0.00 0.00 0.00 6.13
2651 4099 4.514401 GTTCTTATATTATGGGAGGGCGG 58.486 47.826 0.00 0.00 0.00 6.13
2652 4100 4.069312 TCTTATATTATGGGAGGGCGGA 57.931 45.455 0.00 0.00 0.00 5.54
2653 4101 4.431378 TCTTATATTATGGGAGGGCGGAA 58.569 43.478 0.00 0.00 0.00 4.30
2654 4102 4.469945 TCTTATATTATGGGAGGGCGGAAG 59.530 45.833 0.00 0.00 0.00 3.46
2655 4103 2.112279 TATTATGGGAGGGCGGAAGT 57.888 50.000 0.00 0.00 0.00 3.01
2656 4104 2.112279 ATTATGGGAGGGCGGAAGTA 57.888 50.000 0.00 0.00 0.00 2.24
2657 4105 1.882308 TTATGGGAGGGCGGAAGTAA 58.118 50.000 0.00 0.00 0.00 2.24
2658 4106 1.125633 TATGGGAGGGCGGAAGTAAC 58.874 55.000 0.00 0.00 0.00 2.50
2688 4136 1.263752 CATGTGATGTGCGTGTGTTGA 59.736 47.619 0.00 0.00 0.00 3.18
2703 4151 6.231365 CGTGTGTTGACGATTATGTAAAGTC 58.769 40.000 0.00 5.40 42.10 3.01
2775 4386 5.682234 TCAAGATTTGAGAGGATGCACTA 57.318 39.130 0.00 0.00 34.08 2.74
2963 4584 4.828829 CGGGGCTAGTACCATAATTTAGG 58.171 47.826 7.72 0.00 0.00 2.69
3092 4713 6.548321 TCCACATTACCCACTCTTGTTTTAT 58.452 36.000 0.00 0.00 0.00 1.40
3120 7196 2.700371 TCTCACAAAGCCTCACTCTTGA 59.300 45.455 0.00 0.00 0.00 3.02
3127 7203 1.072806 AGCCTCACTCTTGACATGCAA 59.927 47.619 0.00 0.00 34.73 4.08
3147 7223 4.441356 GCAACCACAAATGTCTTCCAGAAA 60.441 41.667 0.00 0.00 0.00 2.52
3150 7226 4.709397 ACCACAAATGTCTTCCAGAAACAA 59.291 37.500 0.00 0.00 0.00 2.83
3151 7227 5.186797 ACCACAAATGTCTTCCAGAAACAAA 59.813 36.000 0.00 0.00 0.00 2.83
3152 7228 5.519927 CCACAAATGTCTTCCAGAAACAAAC 59.480 40.000 0.00 0.00 0.00 2.93
3153 7229 6.332630 CACAAATGTCTTCCAGAAACAAACT 58.667 36.000 0.00 0.00 0.00 2.66
3154 7230 6.254157 CACAAATGTCTTCCAGAAACAAACTG 59.746 38.462 0.00 0.00 35.43 3.16
3155 7231 6.071391 ACAAATGTCTTCCAGAAACAAACTGT 60.071 34.615 0.00 0.00 34.04 3.55
3156 7232 4.963276 TGTCTTCCAGAAACAAACTGTG 57.037 40.909 0.00 0.00 34.04 3.66
3157 7233 3.694072 TGTCTTCCAGAAACAAACTGTGG 59.306 43.478 0.00 0.00 34.04 4.17
3158 7234 3.694566 GTCTTCCAGAAACAAACTGTGGT 59.305 43.478 0.00 0.00 34.04 4.16
3159 7235 4.157840 GTCTTCCAGAAACAAACTGTGGTT 59.842 41.667 0.00 0.00 40.99 3.67
3160 7236 5.355910 GTCTTCCAGAAACAAACTGTGGTTA 59.644 40.000 0.00 0.00 37.24 2.85
3161 7237 5.588648 TCTTCCAGAAACAAACTGTGGTTAG 59.411 40.000 0.00 0.00 37.24 2.34
3162 7238 5.105567 TCCAGAAACAAACTGTGGTTAGA 57.894 39.130 0.00 0.00 37.24 2.10
3163 7239 5.690865 TCCAGAAACAAACTGTGGTTAGAT 58.309 37.500 0.00 0.00 37.24 1.98
3164 7240 5.530915 TCCAGAAACAAACTGTGGTTAGATG 59.469 40.000 0.00 0.49 37.24 2.90
3165 7241 5.278463 CCAGAAACAAACTGTGGTTAGATGG 60.278 44.000 0.00 4.71 37.24 3.51
3166 7242 5.299279 CAGAAACAAACTGTGGTTAGATGGT 59.701 40.000 0.00 0.00 37.24 3.55
3167 7243 5.891551 AGAAACAAACTGTGGTTAGATGGTT 59.108 36.000 0.00 0.00 37.24 3.67
3168 7244 7.012894 CAGAAACAAACTGTGGTTAGATGGTTA 59.987 37.037 0.00 0.00 37.24 2.85
3169 7245 6.877611 AACAAACTGTGGTTAGATGGTTAG 57.122 37.500 0.00 0.00 34.90 2.34
3170 7246 6.182507 ACAAACTGTGGTTAGATGGTTAGA 57.817 37.500 0.00 0.00 34.90 2.10
3171 7247 6.231211 ACAAACTGTGGTTAGATGGTTAGAG 58.769 40.000 0.00 0.00 34.90 2.43
3172 7248 5.422214 AACTGTGGTTAGATGGTTAGAGG 57.578 43.478 0.00 0.00 33.39 3.69
3173 7249 4.684724 ACTGTGGTTAGATGGTTAGAGGA 58.315 43.478 0.00 0.00 0.00 3.71
3174 7250 5.091552 ACTGTGGTTAGATGGTTAGAGGAA 58.908 41.667 0.00 0.00 0.00 3.36
3175 7251 5.046520 ACTGTGGTTAGATGGTTAGAGGAAC 60.047 44.000 0.00 0.00 37.31 3.62
3176 7252 4.841813 TGTGGTTAGATGGTTAGAGGAACA 59.158 41.667 0.00 0.00 40.09 3.18
3177 7253 5.046591 TGTGGTTAGATGGTTAGAGGAACAG 60.047 44.000 0.00 0.00 40.09 3.16
3178 7254 5.046520 GTGGTTAGATGGTTAGAGGAACAGT 60.047 44.000 0.00 0.00 40.09 3.55
3179 7255 5.046591 TGGTTAGATGGTTAGAGGAACAGTG 60.047 44.000 0.00 0.00 40.09 3.66
3180 7256 5.187186 GGTTAGATGGTTAGAGGAACAGTGA 59.813 44.000 0.00 0.00 40.09 3.41
3181 7257 6.127026 GGTTAGATGGTTAGAGGAACAGTGAT 60.127 42.308 0.00 0.00 40.09 3.06
3182 7258 7.069578 GGTTAGATGGTTAGAGGAACAGTGATA 59.930 40.741 0.00 0.00 40.09 2.15
3183 7259 8.643324 GTTAGATGGTTAGAGGAACAGTGATAT 58.357 37.037 0.00 0.00 40.09 1.63
3184 7260 7.296628 AGATGGTTAGAGGAACAGTGATATC 57.703 40.000 0.00 0.00 40.09 1.63
3185 7261 6.841229 AGATGGTTAGAGGAACAGTGATATCA 59.159 38.462 0.00 0.00 40.09 2.15
3186 7262 7.512058 AGATGGTTAGAGGAACAGTGATATCAT 59.488 37.037 9.02 0.00 40.09 2.45
3187 7263 7.055667 TGGTTAGAGGAACAGTGATATCATC 57.944 40.000 9.02 2.01 40.09 2.92
3188 7264 6.611236 TGGTTAGAGGAACAGTGATATCATCA 59.389 38.462 9.02 0.00 40.09 3.07
3189 7265 7.151308 GGTTAGAGGAACAGTGATATCATCAG 58.849 42.308 9.02 4.71 38.78 2.90
3190 7266 5.212532 AGAGGAACAGTGATATCATCAGC 57.787 43.478 9.02 0.00 40.53 4.26
3191 7267 4.040217 AGAGGAACAGTGATATCATCAGCC 59.960 45.833 9.02 7.46 40.53 4.85
3192 7268 3.072184 AGGAACAGTGATATCATCAGCCC 59.928 47.826 9.02 8.25 40.53 5.19
3193 7269 3.181451 GGAACAGTGATATCATCAGCCCA 60.181 47.826 9.02 0.00 40.53 5.36
3194 7270 4.506271 GGAACAGTGATATCATCAGCCCAT 60.506 45.833 9.02 0.00 40.53 4.00
3195 7271 5.280164 GGAACAGTGATATCATCAGCCCATA 60.280 44.000 9.02 0.00 40.53 2.74
3196 7272 6.384342 AACAGTGATATCATCAGCCCATAT 57.616 37.500 9.02 0.00 40.53 1.78
3197 7273 6.384342 ACAGTGATATCATCAGCCCATATT 57.616 37.500 9.02 0.00 40.53 1.28
3198 7274 7.500629 ACAGTGATATCATCAGCCCATATTA 57.499 36.000 9.02 0.00 40.53 0.98
3199 7275 8.098963 ACAGTGATATCATCAGCCCATATTAT 57.901 34.615 9.02 0.00 40.53 1.28
3200 7276 8.554870 ACAGTGATATCATCAGCCCATATTATT 58.445 33.333 9.02 0.00 40.53 1.40
3201 7277 9.404848 CAGTGATATCATCAGCCCATATTATTT 57.595 33.333 9.02 0.00 40.53 1.40
3202 7278 9.624373 AGTGATATCATCAGCCCATATTATTTC 57.376 33.333 9.02 0.00 40.53 2.17
3203 7279 9.624373 GTGATATCATCAGCCCATATTATTTCT 57.376 33.333 9.02 0.00 40.53 2.52
3204 7280 9.623000 TGATATCATCAGCCCATATTATTTCTG 57.377 33.333 0.00 0.00 33.59 3.02
3205 7281 9.842775 GATATCATCAGCCCATATTATTTCTGA 57.157 33.333 0.00 0.00 35.41 3.27
3208 7284 8.945195 TCATCAGCCCATATTATTTCTGAATT 57.055 30.769 0.00 0.00 34.72 2.17
3209 7285 9.370930 TCATCAGCCCATATTATTTCTGAATTT 57.629 29.630 0.00 0.00 34.72 1.82
3226 7302 9.982291 TTCTGAATTTATTTAGGATTTTCGACG 57.018 29.630 0.00 0.00 0.00 5.12
3227 7303 9.373603 TCTGAATTTATTTAGGATTTTCGACGA 57.626 29.630 0.00 0.00 0.00 4.20
3229 7305 9.929722 TGAATTTATTTAGGATTTTCGACGATG 57.070 29.630 0.00 0.00 0.00 3.84
3230 7306 8.782533 AATTTATTTAGGATTTTCGACGATGC 57.217 30.769 0.00 0.00 0.00 3.91
3231 7307 6.912203 TTATTTAGGATTTTCGACGATGCA 57.088 33.333 0.00 0.00 0.00 3.96
3232 7308 4.593597 TTTAGGATTTTCGACGATGCAC 57.406 40.909 0.00 0.00 0.00 4.57
3242 7318 3.168271 CGATGCACGTTCACTGGG 58.832 61.111 0.00 0.00 37.22 4.45
3243 7319 2.390599 CGATGCACGTTCACTGGGG 61.391 63.158 0.00 0.00 37.22 4.96
3244 7320 1.302511 GATGCACGTTCACTGGGGT 60.303 57.895 0.00 0.00 0.00 4.95
3245 7321 0.036765 GATGCACGTTCACTGGGGTA 60.037 55.000 0.00 0.00 0.00 3.69
3246 7322 0.036388 ATGCACGTTCACTGGGGTAG 60.036 55.000 0.00 0.00 0.00 3.18
3247 7323 1.116536 TGCACGTTCACTGGGGTAGA 61.117 55.000 0.00 0.00 0.00 2.59
3248 7324 0.669625 GCACGTTCACTGGGGTAGAC 60.670 60.000 0.00 0.00 0.00 2.59
3249 7325 0.388134 CACGTTCACTGGGGTAGACG 60.388 60.000 0.00 0.00 38.22 4.18
3250 7326 1.214589 CGTTCACTGGGGTAGACGG 59.785 63.158 0.00 0.00 32.84 4.79
3251 7327 1.079336 GTTCACTGGGGTAGACGGC 60.079 63.158 0.00 0.00 0.00 5.68
3252 7328 2.288025 TTCACTGGGGTAGACGGCC 61.288 63.158 0.00 0.00 0.00 6.13
3253 7329 3.782443 CACTGGGGTAGACGGCCC 61.782 72.222 0.00 0.00 45.35 5.80
3281 7357 3.108521 CGAAGCGCTTGTAGTGACT 57.891 52.632 30.47 0.00 0.00 3.41
3282 7358 1.419374 CGAAGCGCTTGTAGTGACTT 58.581 50.000 30.47 0.00 0.00 3.01
3283 7359 1.387084 CGAAGCGCTTGTAGTGACTTC 59.613 52.381 30.47 7.95 36.48 3.01
3284 7360 1.387084 GAAGCGCTTGTAGTGACTTCG 59.613 52.381 30.47 0.00 33.13 3.79
3285 7361 0.314302 AGCGCTTGTAGTGACTTCGT 59.686 50.000 2.64 0.00 0.00 3.85
3286 7362 0.708918 GCGCTTGTAGTGACTTCGTC 59.291 55.000 0.00 0.00 0.00 4.20
3287 7363 1.929038 GCGCTTGTAGTGACTTCGTCA 60.929 52.381 0.00 0.00 40.50 4.35
3288 7364 2.390938 CGCTTGTAGTGACTTCGTCAA 58.609 47.619 0.00 0.00 44.49 3.18
3289 7365 2.987149 CGCTTGTAGTGACTTCGTCAAT 59.013 45.455 0.00 2.49 44.49 2.57
3290 7366 3.428870 CGCTTGTAGTGACTTCGTCAATT 59.571 43.478 2.20 0.00 44.49 2.32
3291 7367 4.084537 CGCTTGTAGTGACTTCGTCAATTT 60.085 41.667 2.20 0.00 44.49 1.82
3292 7368 5.374898 GCTTGTAGTGACTTCGTCAATTTC 58.625 41.667 2.20 0.00 44.49 2.17
3293 7369 5.050363 GCTTGTAGTGACTTCGTCAATTTCA 60.050 40.000 2.20 1.27 44.49 2.69
3294 7370 6.511121 GCTTGTAGTGACTTCGTCAATTTCAA 60.511 38.462 2.20 7.93 44.49 2.69
3295 7371 6.525121 TGTAGTGACTTCGTCAATTTCAAG 57.475 37.500 2.20 0.00 44.49 3.02
3296 7372 6.277605 TGTAGTGACTTCGTCAATTTCAAGA 58.722 36.000 2.20 0.00 44.49 3.02
3297 7373 6.929049 TGTAGTGACTTCGTCAATTTCAAGAT 59.071 34.615 2.20 0.00 44.49 2.40
3298 7374 6.233430 AGTGACTTCGTCAATTTCAAGATG 57.767 37.500 0.00 0.00 44.49 2.90
3299 7375 5.991606 AGTGACTTCGTCAATTTCAAGATGA 59.008 36.000 0.00 0.00 44.49 2.92
3300 7376 6.652481 AGTGACTTCGTCAATTTCAAGATGAT 59.348 34.615 0.00 0.00 44.49 2.45
3301 7377 7.819415 AGTGACTTCGTCAATTTCAAGATGATA 59.181 33.333 0.00 0.00 44.49 2.15
3302 7378 8.607459 GTGACTTCGTCAATTTCAAGATGATAT 58.393 33.333 0.00 0.00 44.49 1.63
3303 7379 8.606602 TGACTTCGTCAATTTCAAGATGATATG 58.393 33.333 0.00 0.00 39.78 1.78
3304 7380 8.498054 ACTTCGTCAATTTCAAGATGATATGT 57.502 30.769 0.00 0.00 30.53 2.29
3305 7381 8.607459 ACTTCGTCAATTTCAAGATGATATGTC 58.393 33.333 0.00 0.00 30.53 3.06
3306 7382 7.165427 TCGTCAATTTCAAGATGATATGTCG 57.835 36.000 0.00 0.00 0.00 4.35
3307 7383 6.756542 TCGTCAATTTCAAGATGATATGTCGT 59.243 34.615 0.00 0.00 0.00 4.34
3308 7384 7.918562 TCGTCAATTTCAAGATGATATGTCGTA 59.081 33.333 0.00 0.00 0.00 3.43
3309 7385 8.703336 CGTCAATTTCAAGATGATATGTCGTAT 58.297 33.333 0.00 0.00 0.00 3.06
3310 7386 9.803130 GTCAATTTCAAGATGATATGTCGTATG 57.197 33.333 0.00 0.00 0.00 2.39
3311 7387 9.546428 TCAATTTCAAGATGATATGTCGTATGT 57.454 29.630 0.00 0.00 0.00 2.29
3312 7388 9.590088 CAATTTCAAGATGATATGTCGTATGTG 57.410 33.333 0.00 0.00 0.00 3.21
3313 7389 8.893219 ATTTCAAGATGATATGTCGTATGTGT 57.107 30.769 0.00 0.00 0.00 3.72
3314 7390 8.716646 TTTCAAGATGATATGTCGTATGTGTT 57.283 30.769 0.00 0.00 0.00 3.32
3315 7391 7.698836 TCAAGATGATATGTCGTATGTGTTG 57.301 36.000 0.00 0.00 0.00 3.33
3316 7392 7.264947 TCAAGATGATATGTCGTATGTGTTGT 58.735 34.615 0.00 0.00 0.00 3.32
3317 7393 7.222611 TCAAGATGATATGTCGTATGTGTTGTG 59.777 37.037 0.00 0.00 0.00 3.33
3318 7394 6.573434 AGATGATATGTCGTATGTGTTGTGT 58.427 36.000 0.00 0.00 0.00 3.72
3319 7395 7.041721 AGATGATATGTCGTATGTGTTGTGTT 58.958 34.615 0.00 0.00 0.00 3.32
3320 7396 6.641176 TGATATGTCGTATGTGTTGTGTTC 57.359 37.500 0.00 0.00 0.00 3.18
3321 7397 6.394809 TGATATGTCGTATGTGTTGTGTTCT 58.605 36.000 0.00 0.00 0.00 3.01
3322 7398 7.540299 TGATATGTCGTATGTGTTGTGTTCTA 58.460 34.615 0.00 0.00 0.00 2.10
3323 7399 8.030106 TGATATGTCGTATGTGTTGTGTTCTAA 58.970 33.333 0.00 0.00 0.00 2.10
3324 7400 8.766000 ATATGTCGTATGTGTTGTGTTCTAAA 57.234 30.769 0.00 0.00 0.00 1.85
3325 7401 6.519353 TGTCGTATGTGTTGTGTTCTAAAG 57.481 37.500 0.00 0.00 0.00 1.85
3326 7402 5.050634 TGTCGTATGTGTTGTGTTCTAAAGC 60.051 40.000 0.00 0.00 0.00 3.51
3327 7403 4.449743 TCGTATGTGTTGTGTTCTAAAGCC 59.550 41.667 0.00 0.00 0.00 4.35
3328 7404 4.378046 CGTATGTGTTGTGTTCTAAAGCCC 60.378 45.833 0.00 0.00 0.00 5.19
3329 7405 2.303175 TGTGTTGTGTTCTAAAGCCCC 58.697 47.619 0.00 0.00 0.00 5.80
3330 7406 2.092103 TGTGTTGTGTTCTAAAGCCCCT 60.092 45.455 0.00 0.00 0.00 4.79
3331 7407 3.136809 TGTGTTGTGTTCTAAAGCCCCTA 59.863 43.478 0.00 0.00 0.00 3.53
3332 7408 3.751698 GTGTTGTGTTCTAAAGCCCCTAG 59.248 47.826 0.00 0.00 0.00 3.02
3333 7409 2.747989 GTTGTGTTCTAAAGCCCCTAGC 59.252 50.000 0.00 0.00 44.25 3.42
3342 7418 3.315140 GCCCCTAGCGATCCCCTC 61.315 72.222 0.00 0.00 0.00 4.30
3343 7419 2.604991 CCCCTAGCGATCCCCTCC 60.605 72.222 0.00 0.00 0.00 4.30
3344 7420 2.201490 CCCTAGCGATCCCCTCCA 59.799 66.667 0.00 0.00 0.00 3.86
3345 7421 2.210711 CCCTAGCGATCCCCTCCAC 61.211 68.421 0.00 0.00 0.00 4.02
3346 7422 2.210711 CCTAGCGATCCCCTCCACC 61.211 68.421 0.00 0.00 0.00 4.61
3347 7423 1.152440 CTAGCGATCCCCTCCACCT 60.152 63.158 0.00 0.00 0.00 4.00
3348 7424 1.152525 TAGCGATCCCCTCCACCTC 60.153 63.158 0.00 0.00 0.00 3.85
3349 7425 2.658321 TAGCGATCCCCTCCACCTCC 62.658 65.000 0.00 0.00 0.00 4.30
3350 7426 2.844839 CGATCCCCTCCACCTCCC 60.845 72.222 0.00 0.00 0.00 4.30
3351 7427 2.844839 GATCCCCTCCACCTCCCG 60.845 72.222 0.00 0.00 0.00 5.14
3352 7428 3.695825 ATCCCCTCCACCTCCCGT 61.696 66.667 0.00 0.00 0.00 5.28
3353 7429 3.698263 ATCCCCTCCACCTCCCGTC 62.698 68.421 0.00 0.00 0.00 4.79
3372 7448 4.760220 GCCTCCCCTCCCCTCCAA 62.760 72.222 0.00 0.00 0.00 3.53
3373 7449 2.127297 CCTCCCCTCCCCTCCAAA 59.873 66.667 0.00 0.00 0.00 3.28
3374 7450 1.309102 CCTCCCCTCCCCTCCAAAT 60.309 63.158 0.00 0.00 0.00 2.32
3375 7451 1.356494 CCTCCCCTCCCCTCCAAATC 61.356 65.000 0.00 0.00 0.00 2.17
3376 7452 1.308746 TCCCCTCCCCTCCAAATCC 60.309 63.158 0.00 0.00 0.00 3.01
3377 7453 2.395353 CCCCTCCCCTCCAAATCCC 61.395 68.421 0.00 0.00 0.00 3.85
3378 7454 1.622442 CCCTCCCCTCCAAATCCCA 60.622 63.158 0.00 0.00 0.00 4.37
3379 7455 1.001140 CCCTCCCCTCCAAATCCCAT 61.001 60.000 0.00 0.00 0.00 4.00
3380 7456 0.480252 CCTCCCCTCCAAATCCCATC 59.520 60.000 0.00 0.00 0.00 3.51
3381 7457 0.480252 CTCCCCTCCAAATCCCATCC 59.520 60.000 0.00 0.00 0.00 3.51
3382 7458 0.254059 TCCCCTCCAAATCCCATCCA 60.254 55.000 0.00 0.00 0.00 3.41
3383 7459 0.636101 CCCCTCCAAATCCCATCCAA 59.364 55.000 0.00 0.00 0.00 3.53
3384 7460 1.221265 CCCCTCCAAATCCCATCCAAT 59.779 52.381 0.00 0.00 0.00 3.16
3385 7461 2.601905 CCCTCCAAATCCCATCCAATC 58.398 52.381 0.00 0.00 0.00 2.67
3386 7462 2.178544 CCCTCCAAATCCCATCCAATCT 59.821 50.000 0.00 0.00 0.00 2.40
3387 7463 3.494332 CCTCCAAATCCCATCCAATCTC 58.506 50.000 0.00 0.00 0.00 2.75
3388 7464 3.494332 CTCCAAATCCCATCCAATCTCC 58.506 50.000 0.00 0.00 0.00 3.71
3389 7465 3.133665 TCCAAATCCCATCCAATCTCCT 58.866 45.455 0.00 0.00 0.00 3.69
3390 7466 3.139025 TCCAAATCCCATCCAATCTCCTC 59.861 47.826 0.00 0.00 0.00 3.71
3391 7467 3.494332 CAAATCCCATCCAATCTCCTCC 58.506 50.000 0.00 0.00 0.00 4.30
3392 7468 1.356124 ATCCCATCCAATCTCCTCCG 58.644 55.000 0.00 0.00 0.00 4.63
3393 7469 1.072159 CCCATCCAATCTCCTCCGC 59.928 63.158 0.00 0.00 0.00 5.54
3394 7470 1.072159 CCATCCAATCTCCTCCGCC 59.928 63.158 0.00 0.00 0.00 6.13
3395 7471 1.414061 CCATCCAATCTCCTCCGCCT 61.414 60.000 0.00 0.00 0.00 5.52
3396 7472 0.034616 CATCCAATCTCCTCCGCCTC 59.965 60.000 0.00 0.00 0.00 4.70
3397 7473 1.124477 ATCCAATCTCCTCCGCCTCC 61.124 60.000 0.00 0.00 0.00 4.30
3398 7474 2.812619 CCAATCTCCTCCGCCTCCC 61.813 68.421 0.00 0.00 0.00 4.30
3399 7475 2.446802 AATCTCCTCCGCCTCCCC 60.447 66.667 0.00 0.00 0.00 4.81
3400 7476 3.028223 AATCTCCTCCGCCTCCCCT 62.028 63.158 0.00 0.00 0.00 4.79
3401 7477 2.956077 AATCTCCTCCGCCTCCCCTC 62.956 65.000 0.00 0.00 0.00 4.30
3411 7487 4.101077 CTCCCCTCCCCTCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
3412 7488 4.095400 TCCCCTCCCCTCTGCCTC 62.095 72.222 0.00 0.00 0.00 4.70
3416 7492 4.101077 CTCCCCTCTGCCTCCCCT 62.101 72.222 0.00 0.00 0.00 4.79
3417 7493 4.095400 TCCCCTCTGCCTCCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
3421 7497 4.787280 CTCTGCCTCCCCTCCCGT 62.787 72.222 0.00 0.00 0.00 5.28
3422 7498 4.779733 TCTGCCTCCCCTCCCGTC 62.780 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.197790 CTGAAGGATGCGGGCACG 61.198 66.667 2.50 2.50 44.63 5.34
27 28 2.826488 CTCCTCCTTTCCCTCTTCTGA 58.174 52.381 0.00 0.00 0.00 3.27
74 75 4.947147 TGGCACAGACAACCCGGC 62.947 66.667 0.00 0.00 0.00 6.13
130 131 0.030908 CCGAGGCTATCCGACTTGTC 59.969 60.000 0.00 0.00 37.47 3.18
133 134 0.395311 TCACCGAGGCTATCCGACTT 60.395 55.000 0.00 0.00 37.47 3.01
141 142 0.395724 TCTGCTCATCACCGAGGCTA 60.396 55.000 0.00 0.00 33.36 3.93
143 144 0.599728 GATCTGCTCATCACCGAGGC 60.600 60.000 0.00 0.00 33.36 4.70
163 164 2.365617 AGACGCAATATGGATCGAACCT 59.634 45.455 13.40 1.42 0.00 3.50
172 173 4.536364 AACATTCGAAGACGCAATATGG 57.464 40.909 3.35 0.00 39.58 2.74
190 191 2.129607 GTCTTTGTCGCGGAAGTAACA 58.870 47.619 6.13 0.00 0.00 2.41
201 202 1.154225 GCCATTGGCGTCTTTGTCG 60.154 57.895 12.82 0.00 39.62 4.35
219 220 2.158652 AGATCATCCATGACTGCCCTTG 60.159 50.000 0.00 0.00 40.03 3.61
236 237 8.894768 ACATACTAAAGCTATGGACAAAGATC 57.105 34.615 0.00 0.00 0.00 2.75
278 279 5.036117 ACATGCCATCGGACTATAGTTTT 57.964 39.130 6.88 0.00 0.00 2.43
279 280 4.689612 ACATGCCATCGGACTATAGTTT 57.310 40.909 6.88 0.00 0.00 2.66
280 281 6.014584 TCAATACATGCCATCGGACTATAGTT 60.015 38.462 6.88 0.00 0.00 2.24
281 282 5.480422 TCAATACATGCCATCGGACTATAGT 59.520 40.000 4.68 4.68 0.00 2.12
282 283 5.965922 TCAATACATGCCATCGGACTATAG 58.034 41.667 0.00 0.00 0.00 1.31
294 296 5.997746 TCTGGCTACTAAATCAATACATGCC 59.002 40.000 0.00 0.00 37.38 4.40
385 388 2.213499 GCTTCCACAATCGGATACCTG 58.787 52.381 0.00 0.00 34.19 4.00
398 401 1.815003 CCCTCAAATGTCTGCTTCCAC 59.185 52.381 0.00 0.00 0.00 4.02
477 480 1.620819 CTCACCTCACTGGCAAGTACT 59.379 52.381 0.00 0.00 40.22 2.73
486 489 1.992277 CCCCTCCCTCACCTCACTG 60.992 68.421 0.00 0.00 0.00 3.66
518 1067 7.870509 AAACGGGTTCTAGAAAACTAAGTTT 57.129 32.000 6.78 10.76 37.34 2.66
530 1079 6.800892 GCGTATCTATTCTAAACGGGTTCTAG 59.199 42.308 0.00 0.00 34.29 2.43
600 1149 0.970937 TGTAGGAACTCAGGGCCTCG 60.971 60.000 0.95 0.00 41.75 4.63
641 1190 4.576879 AGCTAACTAGTTGTTTGTAGGGC 58.423 43.478 18.56 7.93 39.89 5.19
785 1334 3.903783 GCGCTGCCACCAAATCTA 58.096 55.556 0.00 0.00 0.00 1.98
857 1436 3.800506 GTGCGTACATACATGGTTCTACC 59.199 47.826 0.00 0.00 39.22 3.18
888 1467 8.213679 ACCAGCTCTTCTGCATTATATAGAAAA 58.786 33.333 0.00 0.00 41.50 2.29
924 1503 2.281830 GCTGGTCTGTAGCTGGTCT 58.718 57.895 0.00 0.00 38.14 3.85
925 1504 4.921834 GCTGGTCTGTAGCTGGTC 57.078 61.111 0.00 0.00 38.14 4.02
930 1509 0.179097 GGCTGTAGCTGGTCTGTAGC 60.179 60.000 0.00 0.00 41.70 3.58
931 1510 1.479709 AGGCTGTAGCTGGTCTGTAG 58.520 55.000 0.00 0.00 41.70 2.74
932 1511 2.241430 TCTAGGCTGTAGCTGGTCTGTA 59.759 50.000 0.00 0.00 41.70 2.74
933 1512 1.006043 TCTAGGCTGTAGCTGGTCTGT 59.994 52.381 0.00 0.00 41.70 3.41
934 1513 1.680735 CTCTAGGCTGTAGCTGGTCTG 59.319 57.143 0.00 0.00 41.70 3.51
974 1553 0.108329 GTGGGCAAGCGCTAGTCTAA 60.108 55.000 12.05 0.00 38.60 2.10
990 1569 2.436646 GACGTCATGGCAGGGTGG 60.437 66.667 11.55 0.00 0.00 4.61
1033 1612 1.216178 GCTTGGCATCCGCATTGTT 59.784 52.632 0.00 0.00 41.24 2.83
1677 2256 2.868583 CCACGGCTTGATGATCTTACTG 59.131 50.000 0.00 0.00 0.00 2.74
1755 2334 2.267681 CTGTCAGGTCGGCGTAGTCC 62.268 65.000 6.85 5.95 0.00 3.85
1801 2380 1.210545 TTGTCGGCGTCGTTGAGAAC 61.211 55.000 10.18 0.00 37.69 3.01
1803 2382 1.371267 CTTGTCGGCGTCGTTGAGA 60.371 57.895 10.18 0.00 37.69 3.27
1824 2403 2.885113 CGTGAGATGCCGGACTGA 59.115 61.111 5.05 0.00 0.00 3.41
2014 2593 2.885644 CATCTTGTCGACGGCGGG 60.886 66.667 12.58 2.23 38.28 6.13
2364 2943 1.675641 GAACAGCTCCGCCACCATT 60.676 57.895 0.00 0.00 0.00 3.16
2427 3006 3.222354 GAACGTCACCACCGGCTCT 62.222 63.158 0.00 0.00 0.00 4.09
2469 3048 5.640158 ACTGCTCTACTATAGGTCACTCT 57.360 43.478 4.43 0.00 0.00 3.24
2483 3062 7.871973 GCACTATAGTAGTACAGTACTGCTCTA 59.128 40.741 28.67 22.49 46.70 2.43
2549 3997 2.586079 CATCCGGCCAGTAGCACG 60.586 66.667 2.24 0.00 46.50 5.34
2608 4056 5.934935 ACCTTTTTACACTGAACGGTATG 57.065 39.130 0.00 0.00 0.00 2.39
2609 4057 6.293698 AGAACCTTTTTACACTGAACGGTAT 58.706 36.000 0.00 0.00 0.00 2.73
2610 4058 5.673514 AGAACCTTTTTACACTGAACGGTA 58.326 37.500 0.00 0.00 0.00 4.02
2611 4059 4.520179 AGAACCTTTTTACACTGAACGGT 58.480 39.130 0.00 0.00 0.00 4.83
2612 4060 5.494632 AAGAACCTTTTTACACTGAACGG 57.505 39.130 0.00 0.00 0.00 4.44
2623 4071 7.509318 GCCCTCCCATAATATAAGAACCTTTTT 59.491 37.037 0.00 0.00 0.00 1.94
2624 4072 7.010771 GCCCTCCCATAATATAAGAACCTTTT 58.989 38.462 0.00 0.00 0.00 2.27
2625 4073 6.552932 GCCCTCCCATAATATAAGAACCTTT 58.447 40.000 0.00 0.00 0.00 3.11
2626 4074 5.280521 CGCCCTCCCATAATATAAGAACCTT 60.281 44.000 0.00 0.00 0.00 3.50
2627 4075 4.225267 CGCCCTCCCATAATATAAGAACCT 59.775 45.833 0.00 0.00 0.00 3.50
2628 4076 4.514401 CGCCCTCCCATAATATAAGAACC 58.486 47.826 0.00 0.00 0.00 3.62
2629 4077 4.224370 TCCGCCCTCCCATAATATAAGAAC 59.776 45.833 0.00 0.00 0.00 3.01
2630 4078 4.431378 TCCGCCCTCCCATAATATAAGAA 58.569 43.478 0.00 0.00 0.00 2.52
2631 4079 4.069312 TCCGCCCTCCCATAATATAAGA 57.931 45.455 0.00 0.00 0.00 2.10
2632 4080 4.225267 ACTTCCGCCCTCCCATAATATAAG 59.775 45.833 0.00 0.00 0.00 1.73
2633 4081 4.172807 ACTTCCGCCCTCCCATAATATAA 58.827 43.478 0.00 0.00 0.00 0.98
2634 4082 3.798515 ACTTCCGCCCTCCCATAATATA 58.201 45.455 0.00 0.00 0.00 0.86
2635 4083 2.632537 ACTTCCGCCCTCCCATAATAT 58.367 47.619 0.00 0.00 0.00 1.28
2636 4084 2.112279 ACTTCCGCCCTCCCATAATA 57.888 50.000 0.00 0.00 0.00 0.98
2637 4085 2.105993 GTTACTTCCGCCCTCCCATAAT 59.894 50.000 0.00 0.00 0.00 1.28
2638 4086 1.487558 GTTACTTCCGCCCTCCCATAA 59.512 52.381 0.00 0.00 0.00 1.90
2639 4087 1.125633 GTTACTTCCGCCCTCCCATA 58.874 55.000 0.00 0.00 0.00 2.74
2640 4088 0.620700 AGTTACTTCCGCCCTCCCAT 60.621 55.000 0.00 0.00 0.00 4.00
2641 4089 0.838987 AAGTTACTTCCGCCCTCCCA 60.839 55.000 0.00 0.00 0.00 4.37
2642 4090 0.392595 CAAGTTACTTCCGCCCTCCC 60.393 60.000 0.00 0.00 0.00 4.30
2643 4091 0.392595 CCAAGTTACTTCCGCCCTCC 60.393 60.000 0.00 0.00 0.00 4.30
2644 4092 0.611714 TCCAAGTTACTTCCGCCCTC 59.388 55.000 0.00 0.00 0.00 4.30
2645 4093 1.061546 TTCCAAGTTACTTCCGCCCT 58.938 50.000 0.00 0.00 0.00 5.19
2646 4094 2.124277 ATTCCAAGTTACTTCCGCCC 57.876 50.000 0.00 0.00 0.00 6.13
2647 4095 2.415491 GCAATTCCAAGTTACTTCCGCC 60.415 50.000 0.00 0.00 0.00 6.13
2648 4096 2.227865 TGCAATTCCAAGTTACTTCCGC 59.772 45.455 0.00 0.00 0.00 5.54
2649 4097 4.082787 ACATGCAATTCCAAGTTACTTCCG 60.083 41.667 0.00 0.00 0.00 4.30
2650 4098 5.048083 TCACATGCAATTCCAAGTTACTTCC 60.048 40.000 0.00 0.00 0.00 3.46
2651 4099 6.012658 TCACATGCAATTCCAAGTTACTTC 57.987 37.500 0.00 0.00 0.00 3.01
2652 4100 6.015180 ACATCACATGCAATTCCAAGTTACTT 60.015 34.615 0.00 0.00 0.00 2.24
2653 4101 5.477984 ACATCACATGCAATTCCAAGTTACT 59.522 36.000 0.00 0.00 0.00 2.24
2654 4102 5.574055 CACATCACATGCAATTCCAAGTTAC 59.426 40.000 0.00 0.00 0.00 2.50
2655 4103 5.712004 CACATCACATGCAATTCCAAGTTA 58.288 37.500 0.00 0.00 0.00 2.24
2656 4104 4.562082 CACATCACATGCAATTCCAAGTT 58.438 39.130 0.00 0.00 0.00 2.66
2657 4105 3.615592 GCACATCACATGCAATTCCAAGT 60.616 43.478 0.00 0.00 42.88 3.16
2658 4106 2.927477 GCACATCACATGCAATTCCAAG 59.073 45.455 0.00 0.00 42.88 3.61
2688 4136 5.190677 CCCCAAAGGACTTTACATAATCGT 58.809 41.667 0.00 0.00 38.24 3.73
2703 4151 0.753848 AAACGACCACACCCCAAAGG 60.754 55.000 0.00 0.00 43.78 3.11
2756 4367 6.464180 GGAAGATAGTGCATCCTCTCAAATCT 60.464 42.308 0.00 0.00 33.75 2.40
2763 4374 7.385894 AAATAAGGAAGATAGTGCATCCTCT 57.614 36.000 4.78 0.00 41.39 3.69
2874 4495 1.227089 CTTCACTCGATGCCCCTCG 60.227 63.158 0.00 0.00 39.99 4.63
2963 4584 3.940209 TTCCACATGCAAGTTTGATCC 57.060 42.857 0.00 0.00 0.00 3.36
3092 4713 2.302733 TGAGGCTTTGTGAGATGCTACA 59.697 45.455 0.00 0.00 0.00 2.74
3120 7196 3.243839 GGAAGACATTTGTGGTTGCATGT 60.244 43.478 0.00 0.00 32.41 3.21
3147 7223 6.182507 TCTAACCATCTAACCACAGTTTGT 57.817 37.500 0.00 0.00 37.42 2.83
3150 7226 5.091552 TCCTCTAACCATCTAACCACAGTT 58.908 41.667 0.00 0.00 40.15 3.16
3151 7227 4.684724 TCCTCTAACCATCTAACCACAGT 58.315 43.478 0.00 0.00 0.00 3.55
3152 7228 5.046591 TGTTCCTCTAACCATCTAACCACAG 60.047 44.000 0.00 0.00 37.27 3.66
3153 7229 4.841813 TGTTCCTCTAACCATCTAACCACA 59.158 41.667 0.00 0.00 37.27 4.17
3154 7230 5.046520 ACTGTTCCTCTAACCATCTAACCAC 60.047 44.000 0.00 0.00 37.27 4.16
3155 7231 5.046591 CACTGTTCCTCTAACCATCTAACCA 60.047 44.000 0.00 0.00 37.27 3.67
3156 7232 5.187186 TCACTGTTCCTCTAACCATCTAACC 59.813 44.000 0.00 0.00 37.27 2.85
3157 7233 6.282199 TCACTGTTCCTCTAACCATCTAAC 57.718 41.667 0.00 0.00 37.27 2.34
3158 7234 8.783660 ATATCACTGTTCCTCTAACCATCTAA 57.216 34.615 0.00 0.00 37.27 2.10
3159 7235 8.004801 TGATATCACTGTTCCTCTAACCATCTA 58.995 37.037 0.00 0.00 37.27 1.98
3160 7236 6.841229 TGATATCACTGTTCCTCTAACCATCT 59.159 38.462 0.00 0.00 37.27 2.90
3161 7237 7.055667 TGATATCACTGTTCCTCTAACCATC 57.944 40.000 0.00 0.00 37.27 3.51
3162 7238 7.290948 TGATGATATCACTGTTCCTCTAACCAT 59.709 37.037 7.78 0.00 34.01 3.55
3163 7239 6.611236 TGATGATATCACTGTTCCTCTAACCA 59.389 38.462 7.78 0.00 34.01 3.67
3164 7240 7.055667 TGATGATATCACTGTTCCTCTAACC 57.944 40.000 7.78 0.00 34.01 2.85
3165 7241 6.644592 GCTGATGATATCACTGTTCCTCTAAC 59.355 42.308 7.78 0.00 35.51 2.34
3166 7242 6.239430 GGCTGATGATATCACTGTTCCTCTAA 60.239 42.308 7.78 0.00 35.06 2.10
3167 7243 5.244851 GGCTGATGATATCACTGTTCCTCTA 59.755 44.000 7.78 0.00 35.06 2.43
3168 7244 4.040217 GGCTGATGATATCACTGTTCCTCT 59.960 45.833 7.78 0.00 35.06 3.69
3169 7245 4.314121 GGCTGATGATATCACTGTTCCTC 58.686 47.826 7.78 0.28 35.06 3.71
3170 7246 3.072184 GGGCTGATGATATCACTGTTCCT 59.928 47.826 7.78 0.00 35.06 3.36
3171 7247 3.181451 TGGGCTGATGATATCACTGTTCC 60.181 47.826 7.78 8.22 35.06 3.62
3172 7248 4.077300 TGGGCTGATGATATCACTGTTC 57.923 45.455 7.78 2.20 35.06 3.18
3173 7249 4.719026 ATGGGCTGATGATATCACTGTT 57.281 40.909 7.78 0.00 35.06 3.16
3174 7250 6.384342 AATATGGGCTGATGATATCACTGT 57.616 37.500 7.78 0.00 35.06 3.55
3175 7251 8.975663 AATAATATGGGCTGATGATATCACTG 57.024 34.615 7.78 7.53 35.06 3.66
3176 7252 9.624373 GAAATAATATGGGCTGATGATATCACT 57.376 33.333 7.78 0.00 35.06 3.41
3177 7253 9.624373 AGAAATAATATGGGCTGATGATATCAC 57.376 33.333 7.78 3.09 35.06 3.06
3178 7254 9.623000 CAGAAATAATATGGGCTGATGATATCA 57.377 33.333 8.10 8.10 37.76 2.15
3179 7255 9.842775 TCAGAAATAATATGGGCTGATGATATC 57.157 33.333 0.00 0.00 0.00 1.63
3182 7258 9.543231 AATTCAGAAATAATATGGGCTGATGAT 57.457 29.630 0.00 0.00 33.03 2.45
3183 7259 8.945195 AATTCAGAAATAATATGGGCTGATGA 57.055 30.769 0.00 0.00 33.03 2.92
3200 7276 9.982291 CGTCGAAAATCCTAAATAAATTCAGAA 57.018 29.630 0.00 0.00 0.00 3.02
3201 7277 9.373603 TCGTCGAAAATCCTAAATAAATTCAGA 57.626 29.630 0.00 0.00 0.00 3.27
3203 7279 9.929722 CATCGTCGAAAATCCTAAATAAATTCA 57.070 29.630 0.00 0.00 0.00 2.57
3204 7280 8.892905 GCATCGTCGAAAATCCTAAATAAATTC 58.107 33.333 0.00 0.00 0.00 2.17
3205 7281 8.402472 TGCATCGTCGAAAATCCTAAATAAATT 58.598 29.630 0.00 0.00 0.00 1.82
3206 7282 7.855904 GTGCATCGTCGAAAATCCTAAATAAAT 59.144 33.333 0.00 0.00 0.00 1.40
3207 7283 7.184106 GTGCATCGTCGAAAATCCTAAATAAA 58.816 34.615 0.00 0.00 0.00 1.40
3208 7284 6.508880 CGTGCATCGTCGAAAATCCTAAATAA 60.509 38.462 0.00 0.00 34.52 1.40
3209 7285 5.051307 CGTGCATCGTCGAAAATCCTAAATA 60.051 40.000 0.00 0.00 34.52 1.40
3210 7286 4.260212 CGTGCATCGTCGAAAATCCTAAAT 60.260 41.667 0.00 0.00 34.52 1.40
3211 7287 3.061563 CGTGCATCGTCGAAAATCCTAAA 59.938 43.478 0.00 0.00 34.52 1.85
3212 7288 2.601314 CGTGCATCGTCGAAAATCCTAA 59.399 45.455 0.00 0.00 34.52 2.69
3213 7289 2.190161 CGTGCATCGTCGAAAATCCTA 58.810 47.619 0.00 0.00 34.52 2.94
3214 7290 0.999406 CGTGCATCGTCGAAAATCCT 59.001 50.000 0.00 0.00 34.52 3.24
3215 7291 3.491934 CGTGCATCGTCGAAAATCC 57.508 52.632 0.00 0.00 34.52 3.01
3225 7301 2.390599 CCCCAGTGAACGTGCATCG 61.391 63.158 0.00 7.07 46.00 3.84
3226 7302 0.036765 TACCCCAGTGAACGTGCATC 60.037 55.000 0.00 0.00 0.00 3.91
3227 7303 0.036388 CTACCCCAGTGAACGTGCAT 60.036 55.000 0.00 0.00 0.00 3.96
3228 7304 1.116536 TCTACCCCAGTGAACGTGCA 61.117 55.000 0.00 0.00 0.00 4.57
3229 7305 0.669625 GTCTACCCCAGTGAACGTGC 60.670 60.000 0.00 0.00 0.00 5.34
3230 7306 0.388134 CGTCTACCCCAGTGAACGTG 60.388 60.000 0.00 0.00 33.24 4.49
3231 7307 1.530013 CCGTCTACCCCAGTGAACGT 61.530 60.000 0.00 0.00 34.98 3.99
3232 7308 1.214589 CCGTCTACCCCAGTGAACG 59.785 63.158 0.00 0.00 35.93 3.95
3233 7309 1.079336 GCCGTCTACCCCAGTGAAC 60.079 63.158 0.00 0.00 0.00 3.18
3234 7310 2.288025 GGCCGTCTACCCCAGTGAA 61.288 63.158 0.00 0.00 0.00 3.18
3235 7311 2.682494 GGCCGTCTACCCCAGTGA 60.682 66.667 0.00 0.00 0.00 3.41
3236 7312 3.782443 GGGCCGTCTACCCCAGTG 61.782 72.222 0.00 0.00 42.01 3.66
3263 7339 1.387084 GAAGTCACTACAAGCGCTTCG 59.613 52.381 22.21 17.88 0.00 3.79
3264 7340 1.387084 CGAAGTCACTACAAGCGCTTC 59.613 52.381 22.21 7.21 0.00 3.86
3265 7341 1.269621 ACGAAGTCACTACAAGCGCTT 60.270 47.619 18.98 18.98 29.74 4.68
3266 7342 0.314302 ACGAAGTCACTACAAGCGCT 59.686 50.000 2.64 2.64 29.74 5.92
3267 7343 2.810486 ACGAAGTCACTACAAGCGC 58.190 52.632 0.00 0.00 29.74 5.92
3280 7356 7.791131 CGACATATCATCTTGAAATTGACGAAG 59.209 37.037 0.00 0.00 30.41 3.79
3281 7357 7.277760 ACGACATATCATCTTGAAATTGACGAA 59.722 33.333 0.00 0.00 31.87 3.85
3282 7358 6.756542 ACGACATATCATCTTGAAATTGACGA 59.243 34.615 0.00 0.00 31.87 4.20
3283 7359 6.937457 ACGACATATCATCTTGAAATTGACG 58.063 36.000 0.00 0.00 32.77 4.35
3284 7360 9.803130 CATACGACATATCATCTTGAAATTGAC 57.197 33.333 0.00 0.00 0.00 3.18
3285 7361 9.546428 ACATACGACATATCATCTTGAAATTGA 57.454 29.630 0.00 0.00 0.00 2.57
3286 7362 9.590088 CACATACGACATATCATCTTGAAATTG 57.410 33.333 0.00 0.00 0.00 2.32
3287 7363 9.330063 ACACATACGACATATCATCTTGAAATT 57.670 29.630 0.00 0.00 0.00 1.82
3288 7364 8.893219 ACACATACGACATATCATCTTGAAAT 57.107 30.769 0.00 0.00 0.00 2.17
3289 7365 8.603181 CAACACATACGACATATCATCTTGAAA 58.397 33.333 0.00 0.00 0.00 2.69
3290 7366 7.763985 ACAACACATACGACATATCATCTTGAA 59.236 33.333 0.00 0.00 0.00 2.69
3291 7367 7.222611 CACAACACATACGACATATCATCTTGA 59.777 37.037 0.00 0.00 0.00 3.02
3292 7368 7.010460 ACACAACACATACGACATATCATCTTG 59.990 37.037 0.00 0.00 0.00 3.02
3293 7369 7.041721 ACACAACACATACGACATATCATCTT 58.958 34.615 0.00 0.00 0.00 2.40
3294 7370 6.573434 ACACAACACATACGACATATCATCT 58.427 36.000 0.00 0.00 0.00 2.90
3295 7371 6.828502 ACACAACACATACGACATATCATC 57.171 37.500 0.00 0.00 0.00 2.92
3296 7372 7.041721 AGAACACAACACATACGACATATCAT 58.958 34.615 0.00 0.00 0.00 2.45
3297 7373 6.394809 AGAACACAACACATACGACATATCA 58.605 36.000 0.00 0.00 0.00 2.15
3298 7374 6.887376 AGAACACAACACATACGACATATC 57.113 37.500 0.00 0.00 0.00 1.63
3299 7375 8.766000 TTTAGAACACAACACATACGACATAT 57.234 30.769 0.00 0.00 0.00 1.78
3300 7376 7.148705 GCTTTAGAACACAACACATACGACATA 60.149 37.037 0.00 0.00 0.00 2.29
3301 7377 6.347402 GCTTTAGAACACAACACATACGACAT 60.347 38.462 0.00 0.00 0.00 3.06
3302 7378 5.050634 GCTTTAGAACACAACACATACGACA 60.051 40.000 0.00 0.00 0.00 4.35
3303 7379 5.371629 GCTTTAGAACACAACACATACGAC 58.628 41.667 0.00 0.00 0.00 4.34
3304 7380 4.449743 GGCTTTAGAACACAACACATACGA 59.550 41.667 0.00 0.00 0.00 3.43
3305 7381 4.378046 GGGCTTTAGAACACAACACATACG 60.378 45.833 0.00 0.00 0.00 3.06
3306 7382 4.082949 GGGGCTTTAGAACACAACACATAC 60.083 45.833 0.00 0.00 0.00 2.39
3307 7383 4.076394 GGGGCTTTAGAACACAACACATA 58.924 43.478 0.00 0.00 0.00 2.29
3308 7384 2.890945 GGGGCTTTAGAACACAACACAT 59.109 45.455 0.00 0.00 0.00 3.21
3309 7385 2.092103 AGGGGCTTTAGAACACAACACA 60.092 45.455 0.00 0.00 0.00 3.72
3310 7386 2.583143 AGGGGCTTTAGAACACAACAC 58.417 47.619 0.00 0.00 0.00 3.32
3311 7387 3.809324 GCTAGGGGCTTTAGAACACAACA 60.809 47.826 0.00 0.00 38.06 3.33
3312 7388 2.747989 GCTAGGGGCTTTAGAACACAAC 59.252 50.000 0.00 0.00 38.06 3.32
3313 7389 2.614481 CGCTAGGGGCTTTAGAACACAA 60.614 50.000 0.00 0.00 39.13 3.33
3314 7390 1.066430 CGCTAGGGGCTTTAGAACACA 60.066 52.381 0.00 0.00 39.13 3.72
3315 7391 1.206371 TCGCTAGGGGCTTTAGAACAC 59.794 52.381 6.99 0.00 39.13 3.32
3316 7392 1.563924 TCGCTAGGGGCTTTAGAACA 58.436 50.000 6.99 0.00 39.13 3.18
3317 7393 2.548280 GGATCGCTAGGGGCTTTAGAAC 60.548 54.545 6.99 0.00 39.13 3.01
3318 7394 1.692519 GGATCGCTAGGGGCTTTAGAA 59.307 52.381 6.99 0.00 39.13 2.10
3319 7395 1.339097 GGATCGCTAGGGGCTTTAGA 58.661 55.000 6.99 0.00 39.13 2.10
3320 7396 0.321996 GGGATCGCTAGGGGCTTTAG 59.678 60.000 6.99 0.00 39.13 1.85
3321 7397 1.125711 GGGGATCGCTAGGGGCTTTA 61.126 60.000 9.90 0.00 39.13 1.85
3322 7398 2.452937 GGGGATCGCTAGGGGCTTT 61.453 63.158 9.90 0.00 39.13 3.51
3323 7399 2.849646 GGGGATCGCTAGGGGCTT 60.850 66.667 9.90 0.00 39.13 4.35
3324 7400 3.837213 GAGGGGATCGCTAGGGGCT 62.837 68.421 9.90 0.00 39.13 5.19
3325 7401 3.315140 GAGGGGATCGCTAGGGGC 61.315 72.222 9.90 0.00 37.64 5.80
3326 7402 2.604991 GGAGGGGATCGCTAGGGG 60.605 72.222 9.90 0.00 0.00 4.79
3327 7403 2.201490 TGGAGGGGATCGCTAGGG 59.799 66.667 9.90 0.00 0.00 3.53
3328 7404 2.210711 GGTGGAGGGGATCGCTAGG 61.211 68.421 9.90 0.00 0.00 3.02
3329 7405 1.152440 AGGTGGAGGGGATCGCTAG 60.152 63.158 9.90 0.00 0.00 3.42
3330 7406 1.152525 GAGGTGGAGGGGATCGCTA 60.153 63.158 9.90 0.00 0.00 4.26
3331 7407 2.444895 GAGGTGGAGGGGATCGCT 60.445 66.667 9.90 0.00 0.00 4.93
3332 7408 3.551407 GGAGGTGGAGGGGATCGC 61.551 72.222 0.06 0.06 0.00 4.58
3333 7409 2.844839 GGGAGGTGGAGGGGATCG 60.845 72.222 0.00 0.00 0.00 3.69
3334 7410 2.844839 CGGGAGGTGGAGGGGATC 60.845 72.222 0.00 0.00 0.00 3.36
3335 7411 3.695825 ACGGGAGGTGGAGGGGAT 61.696 66.667 0.00 0.00 0.00 3.85
3336 7412 4.393778 GACGGGAGGTGGAGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
3355 7431 4.760220 TTGGAGGGGAGGGGAGGC 62.760 72.222 0.00 0.00 0.00 4.70
3356 7432 1.309102 ATTTGGAGGGGAGGGGAGG 60.309 63.158 0.00 0.00 0.00 4.30
3357 7433 1.356494 GGATTTGGAGGGGAGGGGAG 61.356 65.000 0.00 0.00 0.00 4.30
3358 7434 1.308746 GGATTTGGAGGGGAGGGGA 60.309 63.158 0.00 0.00 0.00 4.81
3359 7435 2.395353 GGGATTTGGAGGGGAGGGG 61.395 68.421 0.00 0.00 0.00 4.79
3360 7436 1.001140 ATGGGATTTGGAGGGGAGGG 61.001 60.000 0.00 0.00 0.00 4.30
3361 7437 0.480252 GATGGGATTTGGAGGGGAGG 59.520 60.000 0.00 0.00 0.00 4.30
3362 7438 0.480252 GGATGGGATTTGGAGGGGAG 59.520 60.000 0.00 0.00 0.00 4.30
3363 7439 0.254059 TGGATGGGATTTGGAGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
3364 7440 0.636101 TTGGATGGGATTTGGAGGGG 59.364 55.000 0.00 0.00 0.00 4.79
3365 7441 2.178544 AGATTGGATGGGATTTGGAGGG 59.821 50.000 0.00 0.00 0.00 4.30
3366 7442 3.494332 GAGATTGGATGGGATTTGGAGG 58.506 50.000 0.00 0.00 0.00 4.30
3367 7443 3.139770 AGGAGATTGGATGGGATTTGGAG 59.860 47.826 0.00 0.00 0.00 3.86
3368 7444 3.133665 AGGAGATTGGATGGGATTTGGA 58.866 45.455 0.00 0.00 0.00 3.53
3369 7445 3.494332 GAGGAGATTGGATGGGATTTGG 58.506 50.000 0.00 0.00 0.00 3.28
3370 7446 3.494332 GGAGGAGATTGGATGGGATTTG 58.506 50.000 0.00 0.00 0.00 2.32
3371 7447 2.107204 CGGAGGAGATTGGATGGGATTT 59.893 50.000 0.00 0.00 0.00 2.17
3372 7448 1.701847 CGGAGGAGATTGGATGGGATT 59.298 52.381 0.00 0.00 0.00 3.01
3373 7449 1.356124 CGGAGGAGATTGGATGGGAT 58.644 55.000 0.00 0.00 0.00 3.85
3374 7450 1.410850 GCGGAGGAGATTGGATGGGA 61.411 60.000 0.00 0.00 0.00 4.37
3375 7451 1.072159 GCGGAGGAGATTGGATGGG 59.928 63.158 0.00 0.00 0.00 4.00
3376 7452 1.072159 GGCGGAGGAGATTGGATGG 59.928 63.158 0.00 0.00 0.00 3.51
3377 7453 0.034616 GAGGCGGAGGAGATTGGATG 59.965 60.000 0.00 0.00 0.00 3.51
3378 7454 1.124477 GGAGGCGGAGGAGATTGGAT 61.124 60.000 0.00 0.00 0.00 3.41
3379 7455 1.762460 GGAGGCGGAGGAGATTGGA 60.762 63.158 0.00 0.00 0.00 3.53
3380 7456 2.812619 GGGAGGCGGAGGAGATTGG 61.813 68.421 0.00 0.00 0.00 3.16
3381 7457 2.812619 GGGGAGGCGGAGGAGATTG 61.813 68.421 0.00 0.00 0.00 2.67
3382 7458 2.446802 GGGGAGGCGGAGGAGATT 60.447 66.667 0.00 0.00 0.00 2.40
3383 7459 3.443479 AGGGGAGGCGGAGGAGAT 61.443 66.667 0.00 0.00 0.00 2.75
3384 7460 4.144727 GAGGGGAGGCGGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
3394 7470 4.101077 AGGCAGAGGGGAGGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
3395 7471 4.095400 GAGGCAGAGGGGAGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
3399 7475 4.101077 AGGGGAGGCAGAGGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
3400 7476 4.095400 GAGGGGAGGCAGAGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
3404 7480 4.787280 ACGGGAGGGGAGGCAGAG 62.787 72.222 0.00 0.00 0.00 3.35
3405 7481 4.779733 GACGGGAGGGGAGGCAGA 62.780 72.222 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.