Multiple sequence alignment - TraesCS6D01G172000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G172000 chr6D 100.000 5797 0 0 1 5797 158448604 158442808 0.000000e+00 10706.0
1 TraesCS6D01G172000 chr6D 94.000 50 3 0 5197 5246 158443363 158443314 6.230000e-10 76.8
2 TraesCS6D01G172000 chr6D 94.000 50 3 0 5242 5291 158443408 158443359 6.230000e-10 76.8
3 TraesCS6D01G172000 chr6A 95.293 3824 138 21 1988 5789 211644651 211640848 0.000000e+00 6026.0
4 TraesCS6D01G172000 chr6A 92.511 908 38 12 652 1545 211646219 211645328 0.000000e+00 1273.0
5 TraesCS6D01G172000 chr6A 91.061 358 22 7 1635 1984 211645072 211644717 5.260000e-130 475.0
6 TraesCS6D01G172000 chr6A 88.953 172 15 1 478 649 211646758 211646591 5.890000e-50 209.0
7 TraesCS6D01G172000 chr6A 96.000 50 2 0 5242 5291 211641451 211641402 1.340000e-11 82.4
8 TraesCS6D01G172000 chr6B 96.486 3216 58 18 649 3841 288635982 288639165 0.000000e+00 5262.0
9 TraesCS6D01G172000 chr6B 94.835 1336 26 10 3836 5165 288639397 288640695 0.000000e+00 2045.0
10 TraesCS6D01G172000 chr6B 89.640 444 20 11 5370 5791 288644856 288645295 5.110000e-150 542.0
11 TraesCS6D01G172000 chr6B 79.930 284 25 6 372 646 288574719 288574979 4.620000e-41 180.0
12 TraesCS6D01G172000 chr2A 85.882 85 11 1 77 161 15813959 15813876 8.000000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G172000 chr6D 158442808 158448604 5796 True 10706.00 10706 100.0000 1 5797 1 chr6D.!!$R1 5796
1 TraesCS6D01G172000 chr6A 211640848 211646758 5910 True 1613.08 6026 92.7636 478 5789 5 chr6A.!!$R1 5311
2 TraesCS6D01G172000 chr6B 288635982 288640695 4713 False 3653.50 5262 95.6605 649 5165 2 chr6B.!!$F3 4516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.036388 CTCCGTGGCCACAGTTGTAT 60.036 55.0 34.16 0.0 0.00 2.29 F
412 413 0.037447 TTCATGGTGCAATGACGGGA 59.963 50.0 0.42 0.0 36.31 5.14 F
545 546 0.108281 GAAGCTTGTACTCCGGGGAC 60.108 60.0 9.33 2.7 0.00 4.46 F
1195 1585 0.399075 CCAAAGTACCCAGACCGGTT 59.601 55.0 9.42 0.0 37.34 4.44 F
1336 1726 0.771755 AGGGTCTTCAGTTTCCACCC 59.228 55.0 0.00 0.0 46.42 4.61 F
1819 2380 1.019805 GCTCGTAAAGGGGTGAGTGC 61.020 60.0 0.00 0.0 0.00 4.40 F
1898 2463 2.288702 CCGCTATAGCAGAGCAGACATT 60.289 50.0 23.99 0.0 40.09 2.71 F
3644 4277 0.600255 GCGAAGGTGGATATGGACCG 60.600 60.0 0.00 0.0 37.32 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1575 0.395312 AAGTGTACCAACCGGTCTGG 59.605 55.000 25.23 25.23 44.71 3.86 R
2370 2997 0.112995 TGGCTGCCTTCACTTGGATT 59.887 50.000 21.03 0.00 0.00 3.01 R
2494 3124 7.566760 TTCAGGAACATGCGATGTATTTATT 57.433 32.000 0.00 0.00 44.07 1.40 R
2605 3236 3.198417 TCATGGATGCTAACTGCTGAAGA 59.802 43.478 0.00 0.00 43.37 2.87 R
3372 4005 3.056891 AGAGCTTCTTCTTCTGAACTCCG 60.057 47.826 0.00 0.00 0.00 4.63 R
3589 4222 2.805671 CTGTCAAACTTATGTGTGGCGA 59.194 45.455 0.00 0.00 38.80 5.54 R
3812 4445 2.959465 AAGTACTGAAAGCAGCCCTT 57.041 45.000 0.00 0.00 46.26 3.95 R
5130 6007 0.396435 GTGTGGTGACCTGGTGATCA 59.604 55.000 2.82 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.503542 CTTGCAAAGCTGGGCTACG 59.496 57.895 0.00 0.00 38.25 3.51
39 40 0.955428 CTTGCAAAGCTGGGCTACGA 60.955 55.000 0.00 0.00 38.25 3.43
40 41 0.955428 TTGCAAAGCTGGGCTACGAG 60.955 55.000 10.76 0.00 38.25 4.18
41 42 1.376037 GCAAAGCTGGGCTACGAGT 60.376 57.895 2.77 0.00 38.25 4.18
42 43 1.639298 GCAAAGCTGGGCTACGAGTG 61.639 60.000 2.77 0.00 38.25 3.51
43 44 0.320771 CAAAGCTGGGCTACGAGTGT 60.321 55.000 0.00 0.00 38.25 3.55
44 45 0.320771 AAAGCTGGGCTACGAGTGTG 60.321 55.000 0.00 0.00 38.25 3.82
45 46 1.185618 AAGCTGGGCTACGAGTGTGA 61.186 55.000 0.00 0.00 38.25 3.58
46 47 0.972983 AGCTGGGCTACGAGTGTGAT 60.973 55.000 0.00 0.00 36.99 3.06
47 48 0.807667 GCTGGGCTACGAGTGTGATG 60.808 60.000 0.00 0.00 0.00 3.07
48 49 0.532573 CTGGGCTACGAGTGTGATGT 59.467 55.000 0.00 0.00 0.00 3.06
49 50 0.246360 TGGGCTACGAGTGTGATGTG 59.754 55.000 0.00 0.00 0.00 3.21
50 51 0.530744 GGGCTACGAGTGTGATGTGA 59.469 55.000 0.00 0.00 0.00 3.58
51 52 1.067142 GGGCTACGAGTGTGATGTGAA 60.067 52.381 0.00 0.00 0.00 3.18
52 53 2.418746 GGGCTACGAGTGTGATGTGAAT 60.419 50.000 0.00 0.00 0.00 2.57
53 54 2.604914 GGCTACGAGTGTGATGTGAATG 59.395 50.000 0.00 0.00 0.00 2.67
54 55 3.254060 GCTACGAGTGTGATGTGAATGT 58.746 45.455 0.00 0.00 0.00 2.71
55 56 3.679980 GCTACGAGTGTGATGTGAATGTT 59.320 43.478 0.00 0.00 0.00 2.71
56 57 4.201628 GCTACGAGTGTGATGTGAATGTTC 60.202 45.833 0.00 0.00 0.00 3.18
57 58 3.067106 ACGAGTGTGATGTGAATGTTCC 58.933 45.455 0.00 0.00 0.00 3.62
58 59 2.416547 CGAGTGTGATGTGAATGTTCCC 59.583 50.000 0.00 0.00 0.00 3.97
59 60 3.411446 GAGTGTGATGTGAATGTTCCCA 58.589 45.455 0.00 0.00 0.00 4.37
60 61 3.415212 AGTGTGATGTGAATGTTCCCAG 58.585 45.455 0.00 0.00 0.00 4.45
61 62 2.489329 GTGTGATGTGAATGTTCCCAGG 59.511 50.000 0.00 0.00 0.00 4.45
62 63 2.374839 TGTGATGTGAATGTTCCCAGGA 59.625 45.455 0.00 0.00 0.00 3.86
63 64 3.010472 TGTGATGTGAATGTTCCCAGGAT 59.990 43.478 0.00 0.00 0.00 3.24
64 65 3.379372 GTGATGTGAATGTTCCCAGGATG 59.621 47.826 0.00 0.00 0.00 3.51
65 66 3.010472 TGATGTGAATGTTCCCAGGATGT 59.990 43.478 0.00 0.00 0.00 3.06
66 67 2.794103 TGTGAATGTTCCCAGGATGTG 58.206 47.619 0.00 0.00 0.00 3.21
76 77 2.814805 CCAGGATGTGGGAAGTTCAT 57.185 50.000 5.01 0.00 43.63 2.57
77 78 2.372264 CCAGGATGTGGGAAGTTCATG 58.628 52.381 5.01 0.00 43.63 3.07
78 79 2.291153 CCAGGATGTGGGAAGTTCATGT 60.291 50.000 5.01 0.00 43.63 3.21
79 80 3.054434 CCAGGATGTGGGAAGTTCATGTA 60.054 47.826 5.01 0.00 43.63 2.29
80 81 3.941483 CAGGATGTGGGAAGTTCATGTAC 59.059 47.826 5.01 0.00 0.00 2.90
81 82 3.054361 AGGATGTGGGAAGTTCATGTACC 60.054 47.826 5.01 0.00 0.00 3.34
82 83 3.308117 GGATGTGGGAAGTTCATGTACCA 60.308 47.826 5.01 0.00 0.00 3.25
83 84 3.134574 TGTGGGAAGTTCATGTACCAC 57.865 47.619 16.89 16.89 46.40 4.16
84 85 2.224670 TGTGGGAAGTTCATGTACCACC 60.225 50.000 19.47 9.22 45.82 4.61
85 86 1.353022 TGGGAAGTTCATGTACCACCC 59.647 52.381 20.08 20.08 35.67 4.61
86 87 1.633945 GGGAAGTTCATGTACCACCCT 59.366 52.381 19.80 0.00 33.72 4.34
87 88 2.355818 GGGAAGTTCATGTACCACCCTC 60.356 54.545 19.80 3.69 33.72 4.30
88 89 2.355818 GGAAGTTCATGTACCACCCTCC 60.356 54.545 5.01 0.00 0.00 4.30
89 90 0.902531 AGTTCATGTACCACCCTCCG 59.097 55.000 0.00 0.00 0.00 4.63
90 91 0.611714 GTTCATGTACCACCCTCCGT 59.388 55.000 0.00 0.00 0.00 4.69
91 92 0.611200 TTCATGTACCACCCTCCGTG 59.389 55.000 0.00 0.00 42.62 4.94
98 99 4.704833 CACCCTCCGTGGCCACAG 62.705 72.222 34.16 24.59 38.96 3.66
100 101 3.953775 CCCTCCGTGGCCACAGTT 61.954 66.667 34.16 0.00 0.00 3.16
101 102 2.669569 CCTCCGTGGCCACAGTTG 60.670 66.667 34.16 18.27 0.00 3.16
102 103 2.111043 CTCCGTGGCCACAGTTGT 59.889 61.111 34.16 0.00 0.00 3.32
103 104 1.369692 CTCCGTGGCCACAGTTGTA 59.630 57.895 34.16 11.95 0.00 2.41
104 105 0.036388 CTCCGTGGCCACAGTTGTAT 60.036 55.000 34.16 0.00 0.00 2.29
105 106 0.398696 TCCGTGGCCACAGTTGTATT 59.601 50.000 34.16 0.00 0.00 1.89
106 107 0.521291 CCGTGGCCACAGTTGTATTG 59.479 55.000 34.16 14.97 0.00 1.90
107 108 0.521291 CGTGGCCACAGTTGTATTGG 59.479 55.000 34.16 11.04 0.00 3.16
108 109 0.887933 GTGGCCACAGTTGTATTGGG 59.112 55.000 31.23 0.00 0.00 4.12
110 111 1.506262 GCCACAGTTGTATTGGGCG 59.494 57.895 0.00 0.00 0.00 6.13
111 112 0.958382 GCCACAGTTGTATTGGGCGA 60.958 55.000 0.00 0.00 0.00 5.54
112 113 1.529226 CCACAGTTGTATTGGGCGAA 58.471 50.000 0.00 0.00 0.00 4.70
113 114 1.883275 CCACAGTTGTATTGGGCGAAA 59.117 47.619 0.00 0.00 0.00 3.46
114 115 2.491693 CCACAGTTGTATTGGGCGAAAT 59.508 45.455 0.00 0.00 0.00 2.17
115 116 3.500982 CACAGTTGTATTGGGCGAAATG 58.499 45.455 0.00 0.00 0.00 2.32
116 117 2.094752 ACAGTTGTATTGGGCGAAATGC 60.095 45.455 0.00 0.00 45.38 3.56
128 129 2.863739 GCGAAATGCCTAACTTGTTCC 58.136 47.619 0.00 0.00 37.76 3.62
129 130 2.415491 GCGAAATGCCTAACTTGTTCCC 60.415 50.000 0.00 0.00 37.76 3.97
130 131 2.159572 CGAAATGCCTAACTTGTTCCCG 60.160 50.000 0.00 0.00 0.00 5.14
131 132 2.579410 AATGCCTAACTTGTTCCCGT 57.421 45.000 0.00 0.00 0.00 5.28
132 133 3.706600 AATGCCTAACTTGTTCCCGTA 57.293 42.857 0.00 0.00 0.00 4.02
133 134 3.706600 ATGCCTAACTTGTTCCCGTAA 57.293 42.857 0.00 0.00 0.00 3.18
134 135 2.769893 TGCCTAACTTGTTCCCGTAAC 58.230 47.619 0.00 0.00 38.67 2.50
135 136 2.104451 TGCCTAACTTGTTCCCGTAACA 59.896 45.455 0.00 0.00 46.41 2.41
144 145 2.745281 TGTTCCCGTAACAAAGCTATGC 59.255 45.455 0.00 0.00 45.11 3.14
145 146 3.007635 GTTCCCGTAACAAAGCTATGCT 58.992 45.455 0.00 0.00 38.12 3.79
146 147 5.045234 TGTTCCCGTAACAAAGCTATGCTT 61.045 41.667 0.00 0.00 45.11 3.91
184 185 7.972832 AAAATTATTCGTACTTCACACTGGA 57.027 32.000 0.00 0.00 0.00 3.86
185 186 7.596749 AAATTATTCGTACTTCACACTGGAG 57.403 36.000 0.00 0.00 0.00 3.86
186 187 2.433868 TTCGTACTTCACACTGGAGC 57.566 50.000 0.00 0.00 0.00 4.70
187 188 1.617322 TCGTACTTCACACTGGAGCT 58.383 50.000 0.00 0.00 0.00 4.09
188 189 1.961394 TCGTACTTCACACTGGAGCTT 59.039 47.619 0.00 0.00 0.00 3.74
189 190 2.061773 CGTACTTCACACTGGAGCTTG 58.938 52.381 0.00 0.00 0.00 4.01
190 191 2.417719 GTACTTCACACTGGAGCTTGG 58.582 52.381 0.00 0.00 0.00 3.61
191 192 0.839946 ACTTCACACTGGAGCTTGGT 59.160 50.000 0.00 0.00 0.00 3.67
192 193 2.047061 ACTTCACACTGGAGCTTGGTA 58.953 47.619 0.00 0.00 0.00 3.25
193 194 2.224305 ACTTCACACTGGAGCTTGGTAC 60.224 50.000 0.00 0.00 0.00 3.34
194 195 1.717032 TCACACTGGAGCTTGGTACT 58.283 50.000 0.00 0.00 0.00 2.73
195 196 2.047061 TCACACTGGAGCTTGGTACTT 58.953 47.619 0.00 0.00 0.00 2.24
196 197 2.146342 CACACTGGAGCTTGGTACTTG 58.854 52.381 0.00 0.00 0.00 3.16
197 198 1.072331 ACACTGGAGCTTGGTACTTGG 59.928 52.381 0.00 0.00 0.00 3.61
198 199 1.072331 CACTGGAGCTTGGTACTTGGT 59.928 52.381 0.00 0.00 0.00 3.67
199 200 1.774856 ACTGGAGCTTGGTACTTGGTT 59.225 47.619 0.00 0.00 0.00 3.67
200 201 2.224548 ACTGGAGCTTGGTACTTGGTTC 60.225 50.000 0.00 0.00 0.00 3.62
201 202 1.073284 TGGAGCTTGGTACTTGGTTCC 59.927 52.381 0.00 1.13 0.00 3.62
202 203 1.073284 GGAGCTTGGTACTTGGTTCCA 59.927 52.381 0.00 0.00 31.34 3.53
203 204 2.290960 GGAGCTTGGTACTTGGTTCCAT 60.291 50.000 0.00 0.00 33.26 3.41
204 205 3.054655 GGAGCTTGGTACTTGGTTCCATA 60.055 47.826 0.00 0.00 33.26 2.74
205 206 4.566907 GGAGCTTGGTACTTGGTTCCATAA 60.567 45.833 0.00 0.00 33.26 1.90
206 207 4.332828 AGCTTGGTACTTGGTTCCATAAC 58.667 43.478 0.00 0.00 33.26 1.89
236 237 7.994425 TTGGACTCAATTCAGCTATTTTACA 57.006 32.000 0.00 0.00 0.00 2.41
237 238 7.994425 TGGACTCAATTCAGCTATTTTACAA 57.006 32.000 0.00 0.00 0.00 2.41
238 239 8.402798 TGGACTCAATTCAGCTATTTTACAAA 57.597 30.769 0.00 0.00 0.00 2.83
239 240 9.023962 TGGACTCAATTCAGCTATTTTACAAAT 57.976 29.630 0.00 0.00 0.00 2.32
248 249 8.700439 TCAGCTATTTTACAAATATTACCCCC 57.300 34.615 0.00 0.00 0.00 5.40
249 250 8.507761 TCAGCTATTTTACAAATATTACCCCCT 58.492 33.333 0.00 0.00 0.00 4.79
250 251 8.576442 CAGCTATTTTACAAATATTACCCCCTG 58.424 37.037 0.00 0.00 0.00 4.45
251 252 7.728532 AGCTATTTTACAAATATTACCCCCTGG 59.271 37.037 0.00 0.00 37.80 4.45
252 253 7.726738 GCTATTTTACAAATATTACCCCCTGGA 59.273 37.037 0.00 0.00 34.81 3.86
253 254 9.822727 CTATTTTACAAATATTACCCCCTGGAT 57.177 33.333 0.00 0.00 34.81 3.41
255 256 8.919018 TTTTACAAATATTACCCCCTGGATTT 57.081 30.769 0.00 0.00 34.81 2.17
259 260 8.491045 ACAAATATTACCCCCTGGATTTATTG 57.509 34.615 0.00 0.00 34.81 1.90
260 261 7.512402 ACAAATATTACCCCCTGGATTTATTGG 59.488 37.037 0.00 0.00 34.81 3.16
261 262 6.813724 ATATTACCCCCTGGATTTATTGGT 57.186 37.500 0.00 0.00 34.81 3.67
262 263 2.846665 ACCCCCTGGATTTATTGGTG 57.153 50.000 0.00 0.00 34.81 4.17
263 264 1.342975 ACCCCCTGGATTTATTGGTGC 60.343 52.381 0.00 0.00 34.81 5.01
264 265 1.062962 CCCCCTGGATTTATTGGTGCT 60.063 52.381 0.00 0.00 0.00 4.40
265 266 2.176798 CCCCCTGGATTTATTGGTGCTA 59.823 50.000 0.00 0.00 0.00 3.49
266 267 3.222603 CCCCTGGATTTATTGGTGCTAC 58.777 50.000 0.00 0.00 0.00 3.58
267 268 3.372566 CCCCTGGATTTATTGGTGCTACA 60.373 47.826 0.00 0.00 0.00 2.74
268 269 3.632145 CCCTGGATTTATTGGTGCTACAC 59.368 47.826 0.00 0.00 0.00 2.90
269 270 4.526970 CCTGGATTTATTGGTGCTACACT 58.473 43.478 0.00 0.00 34.40 3.55
270 271 4.949856 CCTGGATTTATTGGTGCTACACTT 59.050 41.667 0.00 0.00 34.40 3.16
271 272 5.418840 CCTGGATTTATTGGTGCTACACTTT 59.581 40.000 0.00 0.00 34.40 2.66
272 273 6.071391 CCTGGATTTATTGGTGCTACACTTTT 60.071 38.462 0.00 0.00 34.40 2.27
273 274 7.296628 TGGATTTATTGGTGCTACACTTTTT 57.703 32.000 0.00 0.00 34.40 1.94
287 288 3.442441 TTTTTGACCGCCTGCTGG 58.558 55.556 5.03 5.03 0.00 4.85
299 300 4.591399 TGCTGGCTGCTGGCTGTT 62.591 61.111 21.08 0.00 43.37 3.16
300 301 3.745803 GCTGGCTGCTGGCTGTTC 61.746 66.667 21.08 6.05 41.46 3.18
301 302 2.033757 CTGGCTGCTGGCTGTTCT 59.966 61.111 17.87 0.00 41.46 3.01
302 303 1.602888 CTGGCTGCTGGCTGTTCTT 60.603 57.895 17.87 0.00 41.46 2.52
303 304 0.321919 CTGGCTGCTGGCTGTTCTTA 60.322 55.000 17.87 0.00 41.46 2.10
304 305 0.329261 TGGCTGCTGGCTGTTCTTAT 59.671 50.000 17.87 0.00 41.46 1.73
305 306 1.020437 GGCTGCTGGCTGTTCTTATC 58.980 55.000 10.05 0.00 41.46 1.75
306 307 0.654683 GCTGCTGGCTGTTCTTATCG 59.345 55.000 0.00 0.00 38.06 2.92
307 308 0.654683 CTGCTGGCTGTTCTTATCGC 59.345 55.000 0.00 0.00 0.00 4.58
308 309 0.744414 TGCTGGCTGTTCTTATCGCC 60.744 55.000 0.00 0.00 42.78 5.54
309 310 1.440145 GCTGGCTGTTCTTATCGCCC 61.440 60.000 0.00 0.00 41.80 6.13
310 311 0.107703 CTGGCTGTTCTTATCGCCCA 60.108 55.000 0.00 0.00 41.80 5.36
311 312 0.546122 TGGCTGTTCTTATCGCCCAT 59.454 50.000 0.00 0.00 41.80 4.00
312 313 1.064758 TGGCTGTTCTTATCGCCCATT 60.065 47.619 0.00 0.00 41.80 3.16
313 314 2.024414 GGCTGTTCTTATCGCCCATTT 58.976 47.619 0.00 0.00 36.56 2.32
314 315 2.033424 GGCTGTTCTTATCGCCCATTTC 59.967 50.000 0.00 0.00 36.56 2.17
315 316 2.286418 GCTGTTCTTATCGCCCATTTCG 60.286 50.000 0.00 0.00 0.00 3.46
316 317 1.668751 TGTTCTTATCGCCCATTTCGC 59.331 47.619 0.00 0.00 0.00 4.70
317 318 1.002792 GTTCTTATCGCCCATTTCGCC 60.003 52.381 0.00 0.00 0.00 5.54
318 319 0.878523 TCTTATCGCCCATTTCGCCG 60.879 55.000 0.00 0.00 0.00 6.46
319 320 2.443957 CTTATCGCCCATTTCGCCGC 62.444 60.000 0.00 0.00 0.00 6.53
325 326 4.183686 CCATTTCGCCGCCTGCTG 62.184 66.667 0.00 0.00 38.05 4.41
326 327 4.183686 CATTTCGCCGCCTGCTGG 62.184 66.667 5.03 5.03 38.05 4.85
336 337 4.488790 CCTGCTGGCTGTTCTTGT 57.511 55.556 0.00 0.00 0.00 3.16
337 338 2.251600 CCTGCTGGCTGTTCTTGTC 58.748 57.895 0.00 0.00 0.00 3.18
338 339 0.535780 CCTGCTGGCTGTTCTTGTCA 60.536 55.000 0.00 0.00 0.00 3.58
339 340 0.590195 CTGCTGGCTGTTCTTGTCAC 59.410 55.000 0.00 0.00 0.00 3.67
340 341 1.159713 TGCTGGCTGTTCTTGTCACG 61.160 55.000 0.00 0.00 0.00 4.35
341 342 1.845809 GCTGGCTGTTCTTGTCACGG 61.846 60.000 0.00 0.00 0.00 4.94
342 343 0.532862 CTGGCTGTTCTTGTCACGGT 60.533 55.000 0.00 0.00 0.00 4.83
343 344 0.531974 TGGCTGTTCTTGTCACGGTC 60.532 55.000 0.00 0.00 0.00 4.79
344 345 0.531974 GGCTGTTCTTGTCACGGTCA 60.532 55.000 0.00 0.00 0.00 4.02
345 346 1.295792 GCTGTTCTTGTCACGGTCAA 58.704 50.000 0.00 0.00 0.00 3.18
346 347 1.261619 GCTGTTCTTGTCACGGTCAAG 59.738 52.381 9.22 9.22 42.25 3.02
347 348 1.867233 CTGTTCTTGTCACGGTCAAGG 59.133 52.381 13.50 0.00 41.52 3.61
348 349 0.586802 GTTCTTGTCACGGTCAAGGC 59.413 55.000 13.50 6.50 41.52 4.35
349 350 0.468226 TTCTTGTCACGGTCAAGGCT 59.532 50.000 13.50 0.00 41.52 4.58
350 351 0.249868 TCTTGTCACGGTCAAGGCTG 60.250 55.000 13.50 0.00 41.52 4.85
351 352 1.845809 CTTGTCACGGTCAAGGCTGC 61.846 60.000 0.00 0.00 38.70 5.25
352 353 3.414700 GTCACGGTCAAGGCTGCG 61.415 66.667 0.00 0.00 0.00 5.18
373 374 3.075005 CGGCGAGGGAGGGAGAAA 61.075 66.667 0.00 0.00 0.00 2.52
374 375 2.656069 CGGCGAGGGAGGGAGAAAA 61.656 63.158 0.00 0.00 0.00 2.29
375 376 1.222113 GGCGAGGGAGGGAGAAAAG 59.778 63.158 0.00 0.00 0.00 2.27
376 377 1.222113 GCGAGGGAGGGAGAAAAGG 59.778 63.158 0.00 0.00 0.00 3.11
377 378 1.222113 CGAGGGAGGGAGAAAAGGC 59.778 63.158 0.00 0.00 0.00 4.35
378 379 1.268283 CGAGGGAGGGAGAAAAGGCT 61.268 60.000 0.00 0.00 0.00 4.58
379 380 0.254462 GAGGGAGGGAGAAAAGGCTG 59.746 60.000 0.00 0.00 0.00 4.85
380 381 0.476611 AGGGAGGGAGAAAAGGCTGT 60.477 55.000 0.00 0.00 0.00 4.40
381 382 0.405973 GGGAGGGAGAAAAGGCTGTT 59.594 55.000 0.00 0.00 0.00 3.16
382 383 1.539157 GGAGGGAGAAAAGGCTGTTG 58.461 55.000 0.00 0.00 0.00 3.33
383 384 1.539157 GAGGGAGAAAAGGCTGTTGG 58.461 55.000 0.00 0.00 0.00 3.77
384 385 1.073923 GAGGGAGAAAAGGCTGTTGGA 59.926 52.381 0.00 0.00 0.00 3.53
385 386 1.499007 AGGGAGAAAAGGCTGTTGGAA 59.501 47.619 0.00 0.00 0.00 3.53
386 387 2.091333 AGGGAGAAAAGGCTGTTGGAAA 60.091 45.455 0.00 0.00 0.00 3.13
401 402 4.916983 TTGGAAACAGAAGTTCATGGTG 57.083 40.909 5.50 0.00 44.54 4.17
402 403 2.622942 TGGAAACAGAAGTTCATGGTGC 59.377 45.455 5.50 0.00 36.84 5.01
403 404 2.622942 GGAAACAGAAGTTCATGGTGCA 59.377 45.455 5.50 0.00 36.84 4.57
404 405 3.068024 GGAAACAGAAGTTCATGGTGCAA 59.932 43.478 5.50 0.00 36.84 4.08
405 406 4.262164 GGAAACAGAAGTTCATGGTGCAAT 60.262 41.667 5.50 0.00 36.84 3.56
406 407 3.928727 ACAGAAGTTCATGGTGCAATG 57.071 42.857 5.50 0.00 0.00 2.82
407 408 3.489355 ACAGAAGTTCATGGTGCAATGA 58.511 40.909 5.50 0.00 34.75 2.57
408 409 3.254166 ACAGAAGTTCATGGTGCAATGAC 59.746 43.478 5.50 0.00 36.31 3.06
409 410 2.485426 AGAAGTTCATGGTGCAATGACG 59.515 45.455 5.50 0.00 36.31 4.35
410 411 1.167851 AGTTCATGGTGCAATGACGG 58.832 50.000 0.42 0.00 36.31 4.79
411 412 0.171007 GTTCATGGTGCAATGACGGG 59.829 55.000 0.42 0.00 36.31 5.28
412 413 0.037447 TTCATGGTGCAATGACGGGA 59.963 50.000 0.42 0.00 36.31 5.14
413 414 0.392863 TCATGGTGCAATGACGGGAG 60.393 55.000 0.00 0.00 31.58 4.30
414 415 1.750399 ATGGTGCAATGACGGGAGC 60.750 57.895 0.00 0.00 0.00 4.70
415 416 2.045926 GGTGCAATGACGGGAGCT 60.046 61.111 0.00 0.00 0.00 4.09
416 417 2.109126 GGTGCAATGACGGGAGCTC 61.109 63.158 4.71 4.71 0.00 4.09
417 418 1.375908 GTGCAATGACGGGAGCTCA 60.376 57.895 17.19 0.00 0.00 4.26
418 419 1.078918 TGCAATGACGGGAGCTCAG 60.079 57.895 17.19 11.44 0.00 3.35
419 420 1.078848 GCAATGACGGGAGCTCAGT 60.079 57.895 17.19 14.84 0.00 3.41
420 421 0.674895 GCAATGACGGGAGCTCAGTT 60.675 55.000 17.19 0.00 0.00 3.16
421 422 1.405526 GCAATGACGGGAGCTCAGTTA 60.406 52.381 17.19 11.92 0.00 2.24
422 423 2.544685 CAATGACGGGAGCTCAGTTAG 58.455 52.381 17.19 3.91 0.00 2.34
431 432 1.799383 GCTCAGTTAGCCTTGCAGC 59.201 57.895 0.00 0.00 46.25 5.25
432 433 0.957395 GCTCAGTTAGCCTTGCAGCA 60.957 55.000 0.00 0.00 46.25 4.41
433 434 0.801251 CTCAGTTAGCCTTGCAGCAC 59.199 55.000 0.00 0.00 34.23 4.40
434 435 0.950555 TCAGTTAGCCTTGCAGCACG 60.951 55.000 0.00 0.00 34.23 5.34
435 436 2.176792 GTTAGCCTTGCAGCACGC 59.823 61.111 0.00 0.00 42.89 5.34
444 445 2.482374 GCAGCACGCAGACCAATC 59.518 61.111 0.00 0.00 41.79 2.67
445 446 2.327343 GCAGCACGCAGACCAATCA 61.327 57.895 0.00 0.00 41.79 2.57
446 447 1.792301 CAGCACGCAGACCAATCAG 59.208 57.895 0.00 0.00 0.00 2.90
447 448 1.376424 AGCACGCAGACCAATCAGG 60.376 57.895 0.00 0.00 45.67 3.86
448 449 3.044059 GCACGCAGACCAATCAGGC 62.044 63.158 0.00 0.00 43.14 4.85
449 450 1.376424 CACGCAGACCAATCAGGCT 60.376 57.895 0.00 0.00 43.14 4.58
450 451 1.376424 ACGCAGACCAATCAGGCTG 60.376 57.895 8.58 8.58 43.14 4.85
451 452 1.078918 CGCAGACCAATCAGGCTGA 60.079 57.895 21.19 21.19 41.31 4.26
452 453 0.463295 CGCAGACCAATCAGGCTGAT 60.463 55.000 24.01 24.01 41.31 2.90
453 454 1.022735 GCAGACCAATCAGGCTGATG 58.977 55.000 29.43 20.03 41.31 3.07
454 455 1.676746 CAGACCAATCAGGCTGATGG 58.323 55.000 29.43 29.12 41.31 3.51
455 456 1.064906 CAGACCAATCAGGCTGATGGT 60.065 52.381 32.91 32.91 41.31 3.55
456 457 1.064906 AGACCAATCAGGCTGATGGTG 60.065 52.381 35.35 27.88 43.14 4.17
457 458 0.682209 ACCAATCAGGCTGATGGTGC 60.682 55.000 32.36 0.00 43.14 5.01
458 459 0.395311 CCAATCAGGCTGATGGTGCT 60.395 55.000 29.43 11.67 37.15 4.40
459 460 0.738975 CAATCAGGCTGATGGTGCTG 59.261 55.000 29.43 19.32 37.15 4.41
460 461 1.035932 AATCAGGCTGATGGTGCTGC 61.036 55.000 29.43 0.00 37.15 5.25
461 462 2.206182 ATCAGGCTGATGGTGCTGCA 62.206 55.000 28.33 0.00 35.43 4.41
462 463 2.045242 AGGCTGATGGTGCTGCAG 60.045 61.111 10.11 10.11 34.81 4.41
463 464 3.138798 GGCTGATGGTGCTGCAGG 61.139 66.667 17.12 0.00 34.81 4.85
464 465 3.138798 GCTGATGGTGCTGCAGGG 61.139 66.667 17.12 0.00 33.53 4.45
465 466 2.672908 CTGATGGTGCTGCAGGGA 59.327 61.111 17.12 0.00 0.00 4.20
466 467 1.748122 CTGATGGTGCTGCAGGGAC 60.748 63.158 17.12 7.53 35.44 4.46
471 472 3.640407 GTGCTGCAGGGACCCAGA 61.640 66.667 17.12 0.00 31.06 3.86
472 473 3.640407 TGCTGCAGGGACCCAGAC 61.640 66.667 17.12 1.49 31.06 3.51
473 474 3.325753 GCTGCAGGGACCCAGACT 61.326 66.667 17.12 0.00 31.06 3.24
474 475 1.990060 GCTGCAGGGACCCAGACTA 60.990 63.158 17.12 0.00 31.06 2.59
475 476 1.965754 GCTGCAGGGACCCAGACTAG 61.966 65.000 17.12 5.66 31.06 2.57
476 477 0.324738 CTGCAGGGACCCAGACTAGA 60.325 60.000 14.60 0.00 31.06 2.43
477 478 0.324738 TGCAGGGACCCAGACTAGAG 60.325 60.000 14.60 0.00 0.00 2.43
478 479 1.045911 GCAGGGACCCAGACTAGAGG 61.046 65.000 14.60 0.00 0.00 3.69
479 480 1.045911 CAGGGACCCAGACTAGAGGC 61.046 65.000 14.60 0.00 0.00 4.70
480 481 1.001760 GGGACCCAGACTAGAGGCA 59.998 63.158 5.33 0.00 0.00 4.75
491 492 1.751924 ACTAGAGGCATCTCGTTGGAC 59.248 52.381 3.06 0.00 44.47 4.02
499 500 1.067846 CATCTCGTTGGACCGAACAGA 60.068 52.381 7.34 8.42 36.24 3.41
506 507 1.847328 TGGACCGAACAGATGCTAGA 58.153 50.000 0.00 0.00 0.00 2.43
512 513 3.865745 ACCGAACAGATGCTAGAAATTCG 59.134 43.478 0.00 0.00 37.72 3.34
520 521 1.277842 TGCTAGAAATTCGGTCAGGCA 59.722 47.619 0.00 0.00 0.00 4.75
545 546 0.108281 GAAGCTTGTACTCCGGGGAC 60.108 60.000 9.33 2.70 0.00 4.46
565 566 1.690633 GGGAGCTGGGTCTCATGGA 60.691 63.158 0.00 0.00 34.84 3.41
566 567 1.274703 GGGAGCTGGGTCTCATGGAA 61.275 60.000 0.00 0.00 34.84 3.53
567 568 0.842635 GGAGCTGGGTCTCATGGAAT 59.157 55.000 0.00 0.00 34.84 3.01
568 569 1.213926 GGAGCTGGGTCTCATGGAATT 59.786 52.381 0.00 0.00 34.84 2.17
583 584 8.536175 TCTCATGGAATTAATTAAACCCAAACC 58.464 33.333 19.42 9.36 0.00 3.27
619 620 9.793252 CTGCAGATTTGTTATACTAGCAAAATT 57.207 29.630 8.42 0.00 41.15 1.82
646 647 6.310197 CACACGAGATTCAGAAAGGAAATTC 58.690 40.000 0.00 0.00 0.00 2.17
650 1020 5.122869 CGAGATTCAGAAAGGAAATTCAGCA 59.877 40.000 0.00 0.00 0.00 4.41
690 1063 6.003950 ACCTGCTATTCTTAGAAACAAGCAA 58.996 36.000 21.60 11.75 37.97 3.91
708 1081 2.545106 GCAAAAAGGTGGCATTGAACAG 59.455 45.455 2.11 0.00 0.00 3.16
712 1086 0.540365 AGGTGGCATTGAACAGGTGG 60.540 55.000 0.00 0.00 0.00 4.61
716 1090 1.586154 GGCATTGAACAGGTGGTCCG 61.586 60.000 0.00 0.00 39.05 4.79
881 1256 1.079750 GACAGCAAGGGACGAGGAC 60.080 63.158 0.00 0.00 0.00 3.85
921 1299 2.127708 GGAGAGATAAGCAAAGGGGGA 58.872 52.381 0.00 0.00 0.00 4.81
922 1300 2.105649 GGAGAGATAAGCAAAGGGGGAG 59.894 54.545 0.00 0.00 0.00 4.30
923 1301 2.105649 GAGAGATAAGCAAAGGGGGAGG 59.894 54.545 0.00 0.00 0.00 4.30
964 1346 1.084866 TTGTCTCTCTCTCCCTCCCA 58.915 55.000 0.00 0.00 0.00 4.37
968 1358 0.539438 CTCTCTCTCCCTCCCATCGG 60.539 65.000 0.00 0.00 0.00 4.18
981 1371 2.813908 ATCGGTCGCTTCGTTGGC 60.814 61.111 0.00 0.00 0.00 4.52
1029 1419 1.375908 GGCATTCTCCACAGCGTCA 60.376 57.895 0.00 0.00 0.00 4.35
1185 1575 4.015872 TGTCAGGATCAACCAAAGTACC 57.984 45.455 0.00 0.00 42.04 3.34
1194 1584 0.765519 ACCAAAGTACCCAGACCGGT 60.766 55.000 6.92 6.92 40.13 5.28
1195 1585 0.399075 CCAAAGTACCCAGACCGGTT 59.601 55.000 9.42 0.00 37.34 4.44
1196 1586 1.519408 CAAAGTACCCAGACCGGTTG 58.481 55.000 9.42 9.22 37.34 3.77
1197 1587 0.399075 AAAGTACCCAGACCGGTTGG 59.601 55.000 21.96 21.96 37.34 3.77
1336 1726 0.771755 AGGGTCTTCAGTTTCCACCC 59.228 55.000 0.00 0.00 46.42 4.61
1453 1844 6.758254 ACGAAATGTCCAATTTCCAAGATTT 58.242 32.000 5.47 0.00 35.27 2.17
1570 2002 2.218530 GCAGATTGCGTTGTTCCAAAAC 59.781 45.455 0.00 0.00 31.71 2.43
1624 2056 1.935300 GCATATTCACTAGTCCCCGCG 60.935 57.143 0.00 0.00 0.00 6.46
1819 2380 1.019805 GCTCGTAAAGGGGTGAGTGC 61.020 60.000 0.00 0.00 0.00 4.40
1898 2463 2.288702 CCGCTATAGCAGAGCAGACATT 60.289 50.000 23.99 0.00 40.09 2.71
2370 2997 5.534654 GCATGTAATACATAAAGGGAAGGCA 59.465 40.000 5.49 0.00 36.53 4.75
2494 3124 7.161404 AGTTTGTGAAGATACATAGCACTTCA 58.839 34.615 0.00 0.00 43.79 3.02
2605 3236 6.073447 TGGTCATTTGGTCACTATGGTTAT 57.927 37.500 0.00 0.00 0.00 1.89
2705 3336 7.688918 ATAGACCATCAAGAGAAAGGAGAAT 57.311 36.000 0.00 0.00 0.00 2.40
2707 3338 4.853007 ACCATCAAGAGAAAGGAGAATGG 58.147 43.478 0.00 0.00 0.00 3.16
3372 4005 9.708092 AAGAGTCTAAATTGTACCAAGAACTAC 57.292 33.333 0.00 0.00 0.00 2.73
3417 4050 3.181482 TGCGCTTGTTGAAATGGAGAAAA 60.181 39.130 9.73 0.00 0.00 2.29
3644 4277 0.600255 GCGAAGGTGGATATGGACCG 60.600 60.000 0.00 0.00 37.32 4.79
3780 4413 9.343539 GCAAATCCTAAGACCTTCATAGTTATT 57.656 33.333 0.00 0.00 0.00 1.40
3917 4789 3.565307 TCAACATCAGGAAGCAGGTTTT 58.435 40.909 0.00 0.00 0.00 2.43
4005 4878 4.858850 TGAAGCCATGATCAACCTGTATT 58.141 39.130 0.00 0.00 0.00 1.89
4112 4985 0.973632 ATGGCTGTCTGGTGTACGAA 59.026 50.000 0.00 0.00 0.00 3.85
4427 5300 0.178932 ACCCTGAGTACCAGCAGACA 60.179 55.000 8.97 0.00 41.57 3.41
4661 5534 3.288964 GAAGAAGGACCGACCAGATCTA 58.711 50.000 0.00 0.00 42.04 1.98
4664 5537 0.186386 AGGACCGACCAGATCTAGGG 59.814 60.000 13.60 6.81 42.04 3.53
4673 5546 5.304614 CCGACCAGATCTAGGGAAAGAAATA 59.695 44.000 6.11 0.00 0.00 1.40
5116 5993 6.756542 GCCTCAAGTTTTCAACTATGTTTTGT 59.243 34.615 0.00 0.00 41.91 2.83
5188 6066 2.221169 TCTCACCACAATCAACAGCAC 58.779 47.619 0.00 0.00 0.00 4.40
5190 6068 0.040157 CACCACAATCAACAGCACGG 60.040 55.000 0.00 0.00 0.00 4.94
5201 6079 0.246635 ACAGCACGGCGAAGAGTTAT 59.753 50.000 16.62 0.00 0.00 1.89
5263 6141 9.079833 GTTTAGTTAGCAGTTATGACGTAATCA 57.920 33.333 0.00 0.00 43.13 2.57
5266 6144 7.960793 AGTTAGCAGTTATGACGTAATCAAAC 58.039 34.615 0.00 0.00 41.93 2.93
5314 6193 2.371841 TCTTCTGGTGCATACTGTTGGT 59.628 45.455 0.00 0.00 0.00 3.67
5437 6316 5.670149 CTAGCAGAGCTGATTAAATGTGG 57.330 43.478 0.85 0.00 40.10 4.17
5456 6335 5.366460 TGTGGAAGAAAATGTAACACCGTA 58.634 37.500 0.00 0.00 0.00 4.02
5485 6364 4.220382 CCAGTTGCCCATGAACAAATAGAA 59.780 41.667 0.00 0.00 0.00 2.10
5567 6451 1.285280 CCAACCCAGACCTATGGTGA 58.715 55.000 0.00 0.00 38.81 4.02
5635 6524 0.840617 GGGTCAGAGGGGAAAGGATC 59.159 60.000 0.00 0.00 0.00 3.36
5711 6600 2.759973 AGGGATCCAAGCGAGCGA 60.760 61.111 15.23 0.00 0.00 4.93
5786 6676 1.172180 CCGGTTTCAGGCTTTCAGCA 61.172 55.000 0.00 0.00 44.75 4.41
5788 6678 1.600413 CGGTTTCAGGCTTTCAGCAAC 60.600 52.381 0.00 0.00 44.75 4.17
5790 6680 1.408702 GTTTCAGGCTTTCAGCAACCA 59.591 47.619 0.00 0.00 44.75 3.67
5791 6681 1.032014 TTCAGGCTTTCAGCAACCAC 58.968 50.000 0.00 0.00 44.75 4.16
5792 6682 0.183492 TCAGGCTTTCAGCAACCACT 59.817 50.000 0.00 0.00 44.75 4.00
5793 6683 1.035139 CAGGCTTTCAGCAACCACTT 58.965 50.000 0.00 0.00 44.75 3.16
5794 6684 1.035139 AGGCTTTCAGCAACCACTTG 58.965 50.000 0.00 0.00 44.75 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.955428 TCGTAGCCCAGCTTTGCAAG 60.955 55.000 0.00 0.00 40.44 4.01
21 22 0.955428 CTCGTAGCCCAGCTTTGCAA 60.955 55.000 0.00 0.00 40.44 4.08
22 23 1.375908 CTCGTAGCCCAGCTTTGCA 60.376 57.895 6.97 0.00 40.44 4.08
23 24 1.376037 ACTCGTAGCCCAGCTTTGC 60.376 57.895 0.00 0.00 40.44 3.68
24 25 0.320771 ACACTCGTAGCCCAGCTTTG 60.321 55.000 0.00 0.00 40.44 2.77
25 26 0.320771 CACACTCGTAGCCCAGCTTT 60.321 55.000 0.00 0.00 40.44 3.51
26 27 1.185618 TCACACTCGTAGCCCAGCTT 61.186 55.000 0.00 0.00 40.44 3.74
27 28 0.972983 ATCACACTCGTAGCCCAGCT 60.973 55.000 0.00 0.00 43.41 4.24
28 29 0.807667 CATCACACTCGTAGCCCAGC 60.808 60.000 0.00 0.00 0.00 4.85
29 30 0.532573 ACATCACACTCGTAGCCCAG 59.467 55.000 0.00 0.00 0.00 4.45
30 31 0.246360 CACATCACACTCGTAGCCCA 59.754 55.000 0.00 0.00 0.00 5.36
31 32 0.530744 TCACATCACACTCGTAGCCC 59.469 55.000 0.00 0.00 0.00 5.19
32 33 2.363788 TTCACATCACACTCGTAGCC 57.636 50.000 0.00 0.00 0.00 3.93
33 34 3.254060 ACATTCACATCACACTCGTAGC 58.746 45.455 0.00 0.00 0.00 3.58
34 35 4.327357 GGAACATTCACATCACACTCGTAG 59.673 45.833 0.00 0.00 0.00 3.51
35 36 4.242475 GGAACATTCACATCACACTCGTA 58.758 43.478 0.00 0.00 0.00 3.43
36 37 3.067106 GGAACATTCACATCACACTCGT 58.933 45.455 0.00 0.00 0.00 4.18
37 38 2.416547 GGGAACATTCACATCACACTCG 59.583 50.000 0.00 0.00 0.00 4.18
38 39 3.411446 TGGGAACATTCACATCACACTC 58.589 45.455 0.00 0.00 35.26 3.51
39 40 3.415212 CTGGGAACATTCACATCACACT 58.585 45.455 0.00 0.00 40.34 3.55
40 41 2.489329 CCTGGGAACATTCACATCACAC 59.511 50.000 0.00 0.00 40.34 3.82
41 42 2.374839 TCCTGGGAACATTCACATCACA 59.625 45.455 0.00 0.00 40.34 3.58
42 43 3.071874 TCCTGGGAACATTCACATCAC 57.928 47.619 0.00 0.00 40.34 3.06
43 44 3.010472 ACATCCTGGGAACATTCACATCA 59.990 43.478 0.00 0.00 40.34 3.07
44 45 3.379372 CACATCCTGGGAACATTCACATC 59.621 47.826 0.00 0.00 40.34 3.06
45 46 3.359033 CACATCCTGGGAACATTCACAT 58.641 45.455 0.00 0.00 40.34 3.21
46 47 2.555006 CCACATCCTGGGAACATTCACA 60.555 50.000 0.00 0.00 41.51 3.58
47 48 2.094675 CCACATCCTGGGAACATTCAC 58.905 52.381 0.00 0.00 41.51 3.18
48 49 2.512692 CCACATCCTGGGAACATTCA 57.487 50.000 0.00 0.00 41.51 2.57
57 58 2.291153 ACATGAACTTCCCACATCCTGG 60.291 50.000 0.00 0.00 40.26 4.45
58 59 3.077484 ACATGAACTTCCCACATCCTG 57.923 47.619 0.00 0.00 0.00 3.86
59 60 3.054361 GGTACATGAACTTCCCACATCCT 60.054 47.826 0.00 0.00 0.00 3.24
60 61 3.279434 GGTACATGAACTTCCCACATCC 58.721 50.000 0.00 0.00 0.00 3.51
61 62 3.689649 GTGGTACATGAACTTCCCACATC 59.310 47.826 0.00 0.00 44.52 3.06
62 63 3.561313 GGTGGTACATGAACTTCCCACAT 60.561 47.826 0.00 0.00 44.52 3.21
63 64 2.224670 GGTGGTACATGAACTTCCCACA 60.225 50.000 0.00 0.00 44.52 4.17
64 65 2.433436 GGTGGTACATGAACTTCCCAC 58.567 52.381 0.00 5.76 44.52 4.61
65 66 1.353022 GGGTGGTACATGAACTTCCCA 59.647 52.381 0.00 0.00 44.52 4.37
66 67 1.633945 AGGGTGGTACATGAACTTCCC 59.366 52.381 0.00 5.84 44.52 3.97
67 68 2.355818 GGAGGGTGGTACATGAACTTCC 60.356 54.545 0.00 0.00 44.52 3.46
68 69 2.677037 CGGAGGGTGGTACATGAACTTC 60.677 54.545 0.00 0.00 44.52 3.01
69 70 1.278127 CGGAGGGTGGTACATGAACTT 59.722 52.381 0.00 0.00 44.52 2.66
70 71 0.902531 CGGAGGGTGGTACATGAACT 59.097 55.000 0.00 0.00 44.52 3.01
71 72 0.611714 ACGGAGGGTGGTACATGAAC 59.388 55.000 0.00 0.00 44.52 3.18
72 73 0.611200 CACGGAGGGTGGTACATGAA 59.389 55.000 0.00 0.00 44.52 2.57
73 74 2.282827 CACGGAGGGTGGTACATGA 58.717 57.895 0.00 0.00 44.52 3.07
74 75 4.932789 CACGGAGGGTGGTACATG 57.067 61.111 0.00 0.00 44.52 3.21
81 82 4.704833 CTGTGGCCACGGAGGGTG 62.705 72.222 37.13 13.64 46.57 4.61
83 84 3.953775 AACTGTGGCCACGGAGGG 61.954 66.667 44.14 25.74 40.06 4.30
84 85 2.107041 TACAACTGTGGCCACGGAGG 62.107 60.000 44.14 34.76 40.06 4.30
85 86 0.036388 ATACAACTGTGGCCACGGAG 60.036 55.000 44.14 35.26 40.06 4.63
86 87 0.398696 AATACAACTGTGGCCACGGA 59.601 50.000 44.14 26.37 40.06 4.69
87 88 0.521291 CAATACAACTGTGGCCACGG 59.479 55.000 37.89 37.89 43.20 4.94
88 89 0.521291 CCAATACAACTGTGGCCACG 59.479 55.000 30.07 25.11 0.00 4.94
89 90 0.887933 CCCAATACAACTGTGGCCAC 59.112 55.000 29.67 29.67 0.00 5.01
90 91 0.897863 GCCCAATACAACTGTGGCCA 60.898 55.000 0.00 0.00 32.74 5.36
91 92 1.890174 GCCCAATACAACTGTGGCC 59.110 57.895 0.00 0.00 32.74 5.36
92 93 0.958382 TCGCCCAATACAACTGTGGC 60.958 55.000 0.00 0.00 35.55 5.01
93 94 1.529226 TTCGCCCAATACAACTGTGG 58.471 50.000 0.00 0.00 0.00 4.17
94 95 3.500982 CATTTCGCCCAATACAACTGTG 58.499 45.455 0.00 0.00 0.00 3.66
95 96 2.094752 GCATTTCGCCCAATACAACTGT 60.095 45.455 0.00 0.00 32.94 3.55
96 97 2.529151 GCATTTCGCCCAATACAACTG 58.471 47.619 0.00 0.00 32.94 3.16
97 98 2.939460 GCATTTCGCCCAATACAACT 57.061 45.000 0.00 0.00 32.94 3.16
108 109 2.415491 GGGAACAAGTTAGGCATTTCGC 60.415 50.000 0.00 0.00 41.28 4.70
109 110 2.159572 CGGGAACAAGTTAGGCATTTCG 60.160 50.000 0.00 0.00 0.00 3.46
110 111 2.817844 ACGGGAACAAGTTAGGCATTTC 59.182 45.455 0.00 0.00 0.00 2.17
111 112 2.871453 ACGGGAACAAGTTAGGCATTT 58.129 42.857 0.00 0.00 0.00 2.32
112 113 2.579410 ACGGGAACAAGTTAGGCATT 57.421 45.000 0.00 0.00 0.00 3.56
113 114 3.244630 TGTTACGGGAACAAGTTAGGCAT 60.245 43.478 2.60 0.00 45.23 4.40
114 115 2.104451 TGTTACGGGAACAAGTTAGGCA 59.896 45.455 2.60 0.00 45.23 4.75
115 116 2.769893 TGTTACGGGAACAAGTTAGGC 58.230 47.619 2.60 0.00 45.23 3.93
123 124 2.745281 GCATAGCTTTGTTACGGGAACA 59.255 45.455 0.55 0.55 46.56 3.18
124 125 3.007635 AGCATAGCTTTGTTACGGGAAC 58.992 45.455 6.03 0.00 33.89 3.62
125 126 3.343941 AGCATAGCTTTGTTACGGGAA 57.656 42.857 6.03 0.00 33.89 3.97
159 160 8.385898 TCCAGTGTGAAGTACGAATAATTTTT 57.614 30.769 0.00 0.00 0.00 1.94
160 161 7.360946 GCTCCAGTGTGAAGTACGAATAATTTT 60.361 37.037 0.00 0.00 0.00 1.82
161 162 6.092259 GCTCCAGTGTGAAGTACGAATAATTT 59.908 38.462 0.00 0.00 0.00 1.82
162 163 5.581085 GCTCCAGTGTGAAGTACGAATAATT 59.419 40.000 0.00 0.00 0.00 1.40
163 164 5.105310 AGCTCCAGTGTGAAGTACGAATAAT 60.105 40.000 0.00 0.00 0.00 1.28
164 165 4.219944 AGCTCCAGTGTGAAGTACGAATAA 59.780 41.667 0.00 0.00 0.00 1.40
165 166 3.762288 AGCTCCAGTGTGAAGTACGAATA 59.238 43.478 0.00 0.00 0.00 1.75
166 167 2.563179 AGCTCCAGTGTGAAGTACGAAT 59.437 45.455 0.00 0.00 0.00 3.34
167 168 1.961394 AGCTCCAGTGTGAAGTACGAA 59.039 47.619 0.00 0.00 0.00 3.85
168 169 1.617322 AGCTCCAGTGTGAAGTACGA 58.383 50.000 0.00 0.00 0.00 3.43
169 170 2.061773 CAAGCTCCAGTGTGAAGTACG 58.938 52.381 0.00 0.00 0.00 3.67
170 171 2.224305 ACCAAGCTCCAGTGTGAAGTAC 60.224 50.000 0.00 0.00 0.00 2.73
171 172 2.047061 ACCAAGCTCCAGTGTGAAGTA 58.953 47.619 0.00 0.00 0.00 2.24
172 173 0.839946 ACCAAGCTCCAGTGTGAAGT 59.160 50.000 0.00 0.00 0.00 3.01
173 174 2.037772 AGTACCAAGCTCCAGTGTGAAG 59.962 50.000 0.00 0.00 0.00 3.02
174 175 2.047061 AGTACCAAGCTCCAGTGTGAA 58.953 47.619 0.00 0.00 0.00 3.18
175 176 1.717032 AGTACCAAGCTCCAGTGTGA 58.283 50.000 0.00 0.00 0.00 3.58
176 177 2.146342 CAAGTACCAAGCTCCAGTGTG 58.854 52.381 0.00 0.00 0.00 3.82
177 178 1.072331 CCAAGTACCAAGCTCCAGTGT 59.928 52.381 0.00 0.00 0.00 3.55
178 179 1.072331 ACCAAGTACCAAGCTCCAGTG 59.928 52.381 0.00 0.00 0.00 3.66
179 180 1.435256 ACCAAGTACCAAGCTCCAGT 58.565 50.000 0.00 0.00 0.00 4.00
180 181 2.427506 GAACCAAGTACCAAGCTCCAG 58.572 52.381 0.00 0.00 0.00 3.86
181 182 1.073284 GGAACCAAGTACCAAGCTCCA 59.927 52.381 0.00 0.00 0.00 3.86
182 183 1.073284 TGGAACCAAGTACCAAGCTCC 59.927 52.381 0.00 0.00 0.00 4.70
183 184 2.561478 TGGAACCAAGTACCAAGCTC 57.439 50.000 0.00 0.00 0.00 4.09
184 185 4.332828 GTTATGGAACCAAGTACCAAGCT 58.667 43.478 0.00 0.00 37.24 3.74
185 186 4.696899 GTTATGGAACCAAGTACCAAGC 57.303 45.455 0.00 0.00 37.24 4.01
196 197 7.287696 ATTGAGTCCAATATTGGTTATGGAACC 59.712 37.037 29.40 14.58 46.21 3.62
210 211 9.679661 TGTAAAATAGCTGAATTGAGTCCAATA 57.320 29.630 0.00 0.00 41.84 1.90
211 212 8.579850 TGTAAAATAGCTGAATTGAGTCCAAT 57.420 30.769 0.00 0.00 44.38 3.16
212 213 7.994425 TGTAAAATAGCTGAATTGAGTCCAA 57.006 32.000 0.00 0.00 36.61 3.53
213 214 7.994425 TTGTAAAATAGCTGAATTGAGTCCA 57.006 32.000 0.00 0.00 0.00 4.02
222 223 9.138596 GGGGGTAATATTTGTAAAATAGCTGAA 57.861 33.333 0.00 0.00 0.00 3.02
223 224 8.507761 AGGGGGTAATATTTGTAAAATAGCTGA 58.492 33.333 0.00 0.00 0.00 4.26
224 225 8.576442 CAGGGGGTAATATTTGTAAAATAGCTG 58.424 37.037 0.00 0.00 0.00 4.24
225 226 7.728532 CCAGGGGGTAATATTTGTAAAATAGCT 59.271 37.037 0.00 0.00 0.00 3.32
226 227 7.726738 TCCAGGGGGTAATATTTGTAAAATAGC 59.273 37.037 0.00 0.00 34.93 2.97
227 228 9.822727 ATCCAGGGGGTAATATTTGTAAAATAG 57.177 33.333 0.00 0.00 34.93 1.73
229 230 9.514093 AAATCCAGGGGGTAATATTTGTAAAAT 57.486 29.630 0.00 0.00 34.93 1.82
230 231 8.919018 AAATCCAGGGGGTAATATTTGTAAAA 57.081 30.769 0.00 0.00 34.93 1.52
233 234 9.594936 CAATAAATCCAGGGGGTAATATTTGTA 57.405 33.333 0.00 0.00 34.93 2.41
234 235 7.512402 CCAATAAATCCAGGGGGTAATATTTGT 59.488 37.037 0.00 0.00 34.93 2.83
235 236 7.512402 ACCAATAAATCCAGGGGGTAATATTTG 59.488 37.037 0.00 0.00 34.93 2.32
236 237 7.512402 CACCAATAAATCCAGGGGGTAATATTT 59.488 37.037 0.00 0.00 34.93 1.40
237 238 7.016296 CACCAATAAATCCAGGGGGTAATATT 58.984 38.462 0.00 0.00 34.93 1.28
238 239 6.561294 CACCAATAAATCCAGGGGGTAATAT 58.439 40.000 0.00 0.00 34.93 1.28
239 240 5.694405 GCACCAATAAATCCAGGGGGTAATA 60.694 44.000 0.00 0.00 34.93 0.98
240 241 4.814967 CACCAATAAATCCAGGGGGTAAT 58.185 43.478 0.00 0.00 34.93 1.89
241 242 3.628769 GCACCAATAAATCCAGGGGGTAA 60.629 47.826 0.00 0.00 34.93 2.85
242 243 2.091555 GCACCAATAAATCCAGGGGGTA 60.092 50.000 0.00 0.00 34.93 3.69
243 244 1.342975 GCACCAATAAATCCAGGGGGT 60.343 52.381 0.00 0.00 34.93 4.95
244 245 1.062962 AGCACCAATAAATCCAGGGGG 60.063 52.381 0.00 0.00 0.00 5.40
245 246 2.459555 AGCACCAATAAATCCAGGGG 57.540 50.000 0.00 0.00 0.00 4.79
246 247 3.632145 GTGTAGCACCAATAAATCCAGGG 59.368 47.826 0.00 0.00 0.00 4.45
247 248 4.526970 AGTGTAGCACCAATAAATCCAGG 58.473 43.478 0.00 0.00 34.49 4.45
248 249 6.515272 AAAGTGTAGCACCAATAAATCCAG 57.485 37.500 0.00 0.00 34.49 3.86
249 250 6.909550 AAAAGTGTAGCACCAATAAATCCA 57.090 33.333 0.00 0.00 34.49 3.41
270 271 3.442441 CCAGCAGGCGGTCAAAAA 58.558 55.556 0.00 0.00 0.00 1.94
283 284 3.745803 GAACAGCCAGCAGCCAGC 61.746 66.667 0.00 0.00 45.47 4.85
284 285 0.321919 TAAGAACAGCCAGCAGCCAG 60.322 55.000 0.00 0.00 45.47 4.85
285 286 0.329261 ATAAGAACAGCCAGCAGCCA 59.671 50.000 0.00 0.00 45.47 4.75
286 287 1.020437 GATAAGAACAGCCAGCAGCC 58.980 55.000 0.00 0.00 45.47 4.85
287 288 0.654683 CGATAAGAACAGCCAGCAGC 59.345 55.000 0.00 0.00 44.25 5.25
288 289 0.654683 GCGATAAGAACAGCCAGCAG 59.345 55.000 0.00 0.00 0.00 4.24
289 290 2.767536 GCGATAAGAACAGCCAGCA 58.232 52.632 0.00 0.00 0.00 4.41
294 295 2.286418 CGAAATGGGCGATAAGAACAGC 60.286 50.000 0.00 0.00 0.00 4.40
295 296 2.286418 GCGAAATGGGCGATAAGAACAG 60.286 50.000 0.00 0.00 0.00 3.16
296 297 1.668751 GCGAAATGGGCGATAAGAACA 59.331 47.619 0.00 0.00 0.00 3.18
297 298 1.002792 GGCGAAATGGGCGATAAGAAC 60.003 52.381 0.00 0.00 0.00 3.01
298 299 1.305201 GGCGAAATGGGCGATAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
299 300 3.000815 GGCGAAATGGGCGATAAGA 57.999 52.632 0.00 0.00 0.00 2.10
319 320 0.535780 TGACAAGAACAGCCAGCAGG 60.536 55.000 0.00 0.00 38.23 4.85
320 321 0.590195 GTGACAAGAACAGCCAGCAG 59.410 55.000 0.00 0.00 0.00 4.24
321 322 1.159713 CGTGACAAGAACAGCCAGCA 61.160 55.000 0.00 0.00 0.00 4.41
322 323 1.571460 CGTGACAAGAACAGCCAGC 59.429 57.895 0.00 0.00 0.00 4.85
323 324 0.532862 ACCGTGACAAGAACAGCCAG 60.533 55.000 0.00 0.00 0.00 4.85
324 325 0.531974 GACCGTGACAAGAACAGCCA 60.532 55.000 0.00 0.00 0.00 4.75
325 326 0.531974 TGACCGTGACAAGAACAGCC 60.532 55.000 0.00 0.00 0.00 4.85
326 327 1.261619 CTTGACCGTGACAAGAACAGC 59.738 52.381 9.30 0.00 44.92 4.40
327 328 1.867233 CCTTGACCGTGACAAGAACAG 59.133 52.381 14.16 0.00 44.92 3.16
328 329 1.948104 CCTTGACCGTGACAAGAACA 58.052 50.000 14.16 0.00 44.92 3.18
329 330 0.586802 GCCTTGACCGTGACAAGAAC 59.413 55.000 14.16 5.89 44.92 3.01
330 331 0.468226 AGCCTTGACCGTGACAAGAA 59.532 50.000 14.16 0.00 44.92 2.52
331 332 0.249868 CAGCCTTGACCGTGACAAGA 60.250 55.000 14.16 0.00 44.92 3.02
332 333 1.845809 GCAGCCTTGACCGTGACAAG 61.846 60.000 0.00 0.00 42.72 3.16
333 334 1.891919 GCAGCCTTGACCGTGACAA 60.892 57.895 0.00 0.00 0.00 3.18
334 335 2.280797 GCAGCCTTGACCGTGACA 60.281 61.111 0.00 0.00 0.00 3.58
335 336 3.414700 CGCAGCCTTGACCGTGAC 61.415 66.667 0.00 0.00 0.00 3.67
356 357 2.579684 CTTTTCTCCCTCCCTCGCCG 62.580 65.000 0.00 0.00 0.00 6.46
357 358 1.222113 CTTTTCTCCCTCCCTCGCC 59.778 63.158 0.00 0.00 0.00 5.54
358 359 1.222113 CCTTTTCTCCCTCCCTCGC 59.778 63.158 0.00 0.00 0.00 5.03
359 360 1.222113 GCCTTTTCTCCCTCCCTCG 59.778 63.158 0.00 0.00 0.00 4.63
360 361 0.254462 CAGCCTTTTCTCCCTCCCTC 59.746 60.000 0.00 0.00 0.00 4.30
361 362 0.476611 ACAGCCTTTTCTCCCTCCCT 60.477 55.000 0.00 0.00 0.00 4.20
362 363 0.405973 AACAGCCTTTTCTCCCTCCC 59.594 55.000 0.00 0.00 0.00 4.30
363 364 1.539157 CAACAGCCTTTTCTCCCTCC 58.461 55.000 0.00 0.00 0.00 4.30
364 365 1.073923 TCCAACAGCCTTTTCTCCCTC 59.926 52.381 0.00 0.00 0.00 4.30
365 366 1.149101 TCCAACAGCCTTTTCTCCCT 58.851 50.000 0.00 0.00 0.00 4.20
366 367 1.995376 TTCCAACAGCCTTTTCTCCC 58.005 50.000 0.00 0.00 0.00 4.30
367 368 2.693074 TGTTTCCAACAGCCTTTTCTCC 59.307 45.455 0.00 0.00 36.25 3.71
378 379 4.097741 CACCATGAACTTCTGTTTCCAACA 59.902 41.667 0.00 0.00 39.52 3.33
379 380 4.610945 CACCATGAACTTCTGTTTCCAAC 58.389 43.478 0.00 0.00 36.39 3.77
380 381 3.068024 GCACCATGAACTTCTGTTTCCAA 59.932 43.478 0.00 0.00 36.39 3.53
381 382 2.622942 GCACCATGAACTTCTGTTTCCA 59.377 45.455 0.00 0.00 36.39 3.53
382 383 2.622942 TGCACCATGAACTTCTGTTTCC 59.377 45.455 0.00 0.00 36.39 3.13
383 384 3.988379 TGCACCATGAACTTCTGTTTC 57.012 42.857 0.00 0.00 36.39 2.78
384 385 4.341806 TCATTGCACCATGAACTTCTGTTT 59.658 37.500 0.00 0.00 36.39 2.83
385 386 3.890756 TCATTGCACCATGAACTTCTGTT 59.109 39.130 0.00 0.00 39.42 3.16
386 387 3.254166 GTCATTGCACCATGAACTTCTGT 59.746 43.478 2.64 0.00 0.00 3.41
387 388 3.668757 CGTCATTGCACCATGAACTTCTG 60.669 47.826 2.64 0.00 0.00 3.02
388 389 2.485426 CGTCATTGCACCATGAACTTCT 59.515 45.455 2.64 0.00 0.00 2.85
389 390 2.414559 CCGTCATTGCACCATGAACTTC 60.415 50.000 2.64 0.00 0.00 3.01
390 391 1.541147 CCGTCATTGCACCATGAACTT 59.459 47.619 2.64 0.00 0.00 2.66
391 392 1.167851 CCGTCATTGCACCATGAACT 58.832 50.000 2.64 0.00 0.00 3.01
392 393 0.171007 CCCGTCATTGCACCATGAAC 59.829 55.000 2.64 0.00 0.00 3.18
393 394 0.037447 TCCCGTCATTGCACCATGAA 59.963 50.000 2.64 0.00 0.00 2.57
394 395 0.392863 CTCCCGTCATTGCACCATGA 60.393 55.000 0.00 0.00 0.00 3.07
395 396 1.996786 GCTCCCGTCATTGCACCATG 61.997 60.000 0.00 0.00 0.00 3.66
396 397 1.750399 GCTCCCGTCATTGCACCAT 60.750 57.895 0.00 0.00 0.00 3.55
397 398 2.359850 GCTCCCGTCATTGCACCA 60.360 61.111 0.00 0.00 0.00 4.17
398 399 2.045926 AGCTCCCGTCATTGCACC 60.046 61.111 0.00 0.00 0.00 5.01
399 400 1.364626 CTGAGCTCCCGTCATTGCAC 61.365 60.000 12.15 0.00 0.00 4.57
400 401 1.078918 CTGAGCTCCCGTCATTGCA 60.079 57.895 12.15 0.00 0.00 4.08
401 402 0.674895 AACTGAGCTCCCGTCATTGC 60.675 55.000 12.15 0.00 0.00 3.56
402 403 2.544685 CTAACTGAGCTCCCGTCATTG 58.455 52.381 12.15 0.00 0.00 2.82
403 404 2.969628 CTAACTGAGCTCCCGTCATT 57.030 50.000 12.15 0.00 0.00 2.57
414 415 0.801251 GTGCTGCAAGGCTAACTGAG 59.199 55.000 2.77 0.00 0.00 3.35
415 416 0.950555 CGTGCTGCAAGGCTAACTGA 60.951 55.000 2.77 0.00 0.00 3.41
416 417 1.499056 CGTGCTGCAAGGCTAACTG 59.501 57.895 2.77 0.00 0.00 3.16
417 418 2.328099 GCGTGCTGCAAGGCTAACT 61.328 57.895 16.93 0.00 45.45 2.24
418 419 2.176792 GCGTGCTGCAAGGCTAAC 59.823 61.111 16.93 0.00 45.45 2.34
427 428 2.249557 CTGATTGGTCTGCGTGCTGC 62.250 60.000 0.00 0.00 46.70 5.25
428 429 1.642037 CCTGATTGGTCTGCGTGCTG 61.642 60.000 0.00 0.00 0.00 4.41
429 430 1.376424 CCTGATTGGTCTGCGTGCT 60.376 57.895 0.00 0.00 0.00 4.40
430 431 3.044059 GCCTGATTGGTCTGCGTGC 62.044 63.158 0.00 0.00 38.35 5.34
431 432 1.376424 AGCCTGATTGGTCTGCGTG 60.376 57.895 0.00 0.00 38.35 5.34
432 433 1.376424 CAGCCTGATTGGTCTGCGT 60.376 57.895 0.00 0.00 38.35 5.24
433 434 0.463295 ATCAGCCTGATTGGTCTGCG 60.463 55.000 0.08 0.00 38.76 5.18
434 435 1.022735 CATCAGCCTGATTGGTCTGC 58.977 55.000 3.97 0.00 38.76 4.26
435 436 1.064906 ACCATCAGCCTGATTGGTCTG 60.065 52.381 17.71 3.97 35.10 3.51
436 437 1.064906 CACCATCAGCCTGATTGGTCT 60.065 52.381 19.54 4.14 36.69 3.85
437 438 1.386533 CACCATCAGCCTGATTGGTC 58.613 55.000 19.54 0.00 36.69 4.02
438 439 0.682209 GCACCATCAGCCTGATTGGT 60.682 55.000 17.71 17.71 38.15 3.67
439 440 0.395311 AGCACCATCAGCCTGATTGG 60.395 55.000 16.73 16.73 34.28 3.16
440 441 0.738975 CAGCACCATCAGCCTGATTG 59.261 55.000 3.97 4.17 34.28 2.67
441 442 1.035932 GCAGCACCATCAGCCTGATT 61.036 55.000 3.97 0.00 34.28 2.57
442 443 1.453379 GCAGCACCATCAGCCTGAT 60.453 57.895 0.08 0.08 37.65 2.90
443 444 2.045634 GCAGCACCATCAGCCTGA 60.046 61.111 0.00 0.00 0.00 3.86
444 445 2.360726 TGCAGCACCATCAGCCTG 60.361 61.111 0.00 0.00 0.00 4.85
445 446 2.045242 CTGCAGCACCATCAGCCT 60.045 61.111 0.00 0.00 0.00 4.58
446 447 3.138798 CCTGCAGCACCATCAGCC 61.139 66.667 8.66 0.00 0.00 4.85
447 448 3.138798 CCCTGCAGCACCATCAGC 61.139 66.667 8.66 0.00 0.00 4.26
448 449 1.748122 GTCCCTGCAGCACCATCAG 60.748 63.158 8.66 0.00 0.00 2.90
449 450 2.352422 GTCCCTGCAGCACCATCA 59.648 61.111 8.66 0.00 0.00 3.07
450 451 2.439156 GGTCCCTGCAGCACCATC 60.439 66.667 22.29 5.05 0.00 3.51
451 452 4.052518 GGGTCCCTGCAGCACCAT 62.053 66.667 26.21 0.00 31.06 3.55
453 454 4.729918 CTGGGTCCCTGCAGCACC 62.730 72.222 20.09 20.09 0.00 5.01
454 455 3.640407 TCTGGGTCCCTGCAGCAC 61.640 66.667 8.66 6.85 0.00 4.40
455 456 2.746947 TAGTCTGGGTCCCTGCAGCA 62.747 60.000 8.66 0.00 0.00 4.41
456 457 1.965754 CTAGTCTGGGTCCCTGCAGC 61.966 65.000 8.66 2.92 0.00 5.25
457 458 0.324738 TCTAGTCTGGGTCCCTGCAG 60.325 60.000 10.00 6.78 0.00 4.41
458 459 0.324738 CTCTAGTCTGGGTCCCTGCA 60.325 60.000 10.00 0.00 0.00 4.41
459 460 1.045911 CCTCTAGTCTGGGTCCCTGC 61.046 65.000 10.00 5.37 0.00 4.85
460 461 1.045911 GCCTCTAGTCTGGGTCCCTG 61.046 65.000 10.00 9.21 0.00 4.45
461 462 1.311747 GCCTCTAGTCTGGGTCCCT 59.688 63.158 10.00 0.00 0.00 4.20
462 463 0.399233 ATGCCTCTAGTCTGGGTCCC 60.399 60.000 0.00 0.00 0.00 4.46
463 464 1.044611 GATGCCTCTAGTCTGGGTCC 58.955 60.000 0.00 0.00 0.00 4.46
464 465 1.960689 GAGATGCCTCTAGTCTGGGTC 59.039 57.143 0.00 0.00 36.50 4.46
465 466 1.752436 CGAGATGCCTCTAGTCTGGGT 60.752 57.143 0.00 0.00 37.28 4.51
466 467 0.958091 CGAGATGCCTCTAGTCTGGG 59.042 60.000 0.00 0.00 37.28 4.45
467 468 1.686355 ACGAGATGCCTCTAGTCTGG 58.314 55.000 0.00 0.00 32.56 3.86
468 469 2.223688 CCAACGAGATGCCTCTAGTCTG 60.224 54.545 5.31 6.41 36.47 3.51
469 470 2.028130 CCAACGAGATGCCTCTAGTCT 58.972 52.381 5.31 0.00 36.47 3.24
470 471 2.025155 TCCAACGAGATGCCTCTAGTC 58.975 52.381 5.31 0.00 36.47 2.59
471 472 1.751924 GTCCAACGAGATGCCTCTAGT 59.248 52.381 0.00 0.00 38.80 2.57
472 473 1.067821 GGTCCAACGAGATGCCTCTAG 59.932 57.143 0.00 0.00 37.28 2.43
473 474 1.112113 GGTCCAACGAGATGCCTCTA 58.888 55.000 0.00 0.00 37.28 2.43
474 475 1.901085 GGTCCAACGAGATGCCTCT 59.099 57.895 0.00 0.00 37.28 3.69
475 476 1.519455 CGGTCCAACGAGATGCCTC 60.519 63.158 0.00 0.00 35.47 4.70
476 477 1.541310 TTCGGTCCAACGAGATGCCT 61.541 55.000 0.00 0.00 44.47 4.75
477 478 1.079405 TTCGGTCCAACGAGATGCC 60.079 57.895 0.00 0.00 44.47 4.40
478 479 0.669318 TGTTCGGTCCAACGAGATGC 60.669 55.000 0.00 0.00 44.47 3.91
479 480 1.067846 TCTGTTCGGTCCAACGAGATG 60.068 52.381 0.00 0.00 44.47 2.90
480 481 1.254026 TCTGTTCGGTCCAACGAGAT 58.746 50.000 0.00 0.00 44.47 2.75
491 492 3.246226 CCGAATTTCTAGCATCTGTTCGG 59.754 47.826 8.91 8.91 46.79 4.30
499 500 2.092968 TGCCTGACCGAATTTCTAGCAT 60.093 45.455 0.00 0.00 0.00 3.79
506 507 1.098050 GCATCTGCCTGACCGAATTT 58.902 50.000 0.00 0.00 34.31 1.82
512 513 2.467826 GCTTCGCATCTGCCTGACC 61.468 63.158 0.00 0.00 37.91 4.02
520 521 1.469940 CGGAGTACAAGCTTCGCATCT 60.470 52.381 0.00 0.00 30.14 2.90
530 531 1.614241 CCCTGTCCCCGGAGTACAAG 61.614 65.000 0.73 0.00 0.00 3.16
545 546 1.525923 CATGAGACCCAGCTCCCTG 59.474 63.158 0.00 0.00 38.85 4.45
556 557 9.366216 GTTTGGGTTTAATTAATTCCATGAGAC 57.634 33.333 16.10 11.08 0.00 3.36
565 566 9.126151 CCTGTTTTGGTTTGGGTTTAATTAATT 57.874 29.630 5.89 5.89 0.00 1.40
566 567 7.721842 CCCTGTTTTGGTTTGGGTTTAATTAAT 59.278 33.333 0.00 0.00 33.49 1.40
567 568 7.054751 CCCTGTTTTGGTTTGGGTTTAATTAA 58.945 34.615 0.00 0.00 33.49 1.40
568 569 6.592870 CCCTGTTTTGGTTTGGGTTTAATTA 58.407 36.000 0.00 0.00 33.49 1.40
583 584 2.224113 ACAAATCTGCAGCCCTGTTTTG 60.224 45.455 9.47 13.03 37.73 2.44
619 620 2.807967 CCTTTCTGAATCTCGTGTGCAA 59.192 45.455 0.00 0.00 0.00 4.08
624 625 6.486253 TGAATTTCCTTTCTGAATCTCGTG 57.514 37.500 0.00 0.00 0.00 4.35
626 627 5.122869 TGCTGAATTTCCTTTCTGAATCTCG 59.877 40.000 0.00 0.00 0.00 4.04
646 647 0.886490 GACAGACAGGGGTGTTGCTG 60.886 60.000 0.00 0.00 0.00 4.41
650 1020 0.694444 AGGTGACAGACAGGGGTGTT 60.694 55.000 0.00 0.00 0.00 3.32
690 1063 2.102925 CACCTGTTCAATGCCACCTTTT 59.897 45.455 0.00 0.00 0.00 2.27
708 1081 4.139234 GTAGACGGGCGGACCACC 62.139 72.222 0.00 0.00 40.22 4.61
712 1086 4.139234 GGGTGTAGACGGGCGGAC 62.139 72.222 0.00 0.00 0.00 4.79
716 1090 2.267961 CAAGGGGTGTAGACGGGC 59.732 66.667 0.00 0.00 0.00 6.13
721 1095 4.553330 CTTCTTAAGCAAGGGGTGTAGA 57.447 45.455 0.00 0.00 32.22 2.59
859 1234 2.738521 CGTCCCTTGCTGTCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
861 1236 2.651361 CTCGTCCCTTGCTGTCGT 59.349 61.111 0.00 0.00 0.00 4.34
964 1346 2.813908 GCCAACGAAGCGACCGAT 60.814 61.111 0.00 0.00 0.00 4.18
968 1358 2.665185 ACCAGCCAACGAAGCGAC 60.665 61.111 0.00 0.00 34.64 5.19
981 1371 0.891373 TTTCTCAGCTCTCCGACCAG 59.109 55.000 0.00 0.00 0.00 4.00
1185 1575 0.395312 AAGTGTACCAACCGGTCTGG 59.605 55.000 25.23 25.23 44.71 3.86
1194 1584 3.746045 AAAGAGCGAGAAGTGTACCAA 57.254 42.857 0.00 0.00 0.00 3.67
1195 1585 4.381612 CCATAAAGAGCGAGAAGTGTACCA 60.382 45.833 0.00 0.00 0.00 3.25
1196 1586 4.113354 CCATAAAGAGCGAGAAGTGTACC 58.887 47.826 0.00 0.00 0.00 3.34
1197 1587 4.745649 ACCATAAAGAGCGAGAAGTGTAC 58.254 43.478 0.00 0.00 0.00 2.90
1198 1588 6.376299 TCTTACCATAAAGAGCGAGAAGTGTA 59.624 38.462 0.00 0.00 31.85 2.90
1199 1589 3.963428 ACCATAAAGAGCGAGAAGTGT 57.037 42.857 0.00 0.00 0.00 3.55
1200 1590 5.651530 TCTTACCATAAAGAGCGAGAAGTG 58.348 41.667 0.00 0.00 31.85 3.16
1201 1591 5.897050 CTCTTACCATAAAGAGCGAGAAGT 58.103 41.667 1.02 0.00 44.33 3.01
1336 1726 4.024218 TGGTGAACGGGTTACAAAAATACG 60.024 41.667 0.00 0.00 0.00 3.06
1435 1826 3.320541 ACGCAAATCTTGGAAATTGGACA 59.679 39.130 0.00 0.00 0.00 4.02
1453 1844 6.735678 ATAACATTGTCACAGAATAACGCA 57.264 33.333 0.00 0.00 0.00 5.24
1510 1901 4.326278 CGCTGTAAATCGTGATTGTGTAGT 59.674 41.667 0.00 0.00 0.00 2.73
1570 2002 9.820229 TTAAAACTATGCAGTAAGTCAAATTCG 57.180 29.630 0.00 0.00 33.48 3.34
1624 2056 5.238583 AGTCGCCTTATGTAATCAATAGCC 58.761 41.667 0.00 0.00 0.00 3.93
1819 2380 4.744795 AGGCAGTGTTCTAGTATTCAGG 57.255 45.455 0.00 0.00 0.00 3.86
1910 2475 7.890515 TCAGCTATTATAGATGGTTCACTCTG 58.109 38.462 16.13 4.32 42.22 3.35
2370 2997 0.112995 TGGCTGCCTTCACTTGGATT 59.887 50.000 21.03 0.00 0.00 3.01
2494 3124 7.566760 TTCAGGAACATGCGATGTATTTATT 57.433 32.000 0.00 0.00 44.07 1.40
2605 3236 3.198417 TCATGGATGCTAACTGCTGAAGA 59.802 43.478 0.00 0.00 43.37 2.87
3372 4005 3.056891 AGAGCTTCTTCTTCTGAACTCCG 60.057 47.826 0.00 0.00 0.00 4.63
3417 4050 4.715983 CGCAGCTTTGCACTTTGT 57.284 50.000 0.00 0.00 34.41 2.83
3589 4222 2.805671 CTGTCAAACTTATGTGTGGCGA 59.194 45.455 0.00 0.00 38.80 5.54
3780 4413 9.890629 ACTGACAAATAATGAAGCTATAACTGA 57.109 29.630 0.00 0.00 0.00 3.41
3812 4445 2.959465 AAGTACTGAAAGCAGCCCTT 57.041 45.000 0.00 0.00 46.26 3.95
3917 4789 7.287061 TGAGGTCTCCTGAAACAAATAAAAGA 58.713 34.615 0.00 0.00 31.76 2.52
4005 4878 3.191669 GCAAAGCATTGATAAGCATGCA 58.808 40.909 21.98 0.00 42.02 3.96
4112 4985 2.679082 AGGCTTCCGTAGTCCATGTAT 58.321 47.619 0.00 0.00 0.00 2.29
4427 5300 0.251922 ATTTGGTGGTCAGCATGCCT 60.252 50.000 15.66 0.00 38.73 4.75
4513 5386 2.037136 GCATGCTCGACTTGGTGCT 61.037 57.895 11.37 0.00 0.00 4.40
4568 5441 2.383245 CTGGCCAGTCTGTCACCGTT 62.383 60.000 25.53 0.00 0.00 4.44
4652 5525 7.001073 GCAATATTTCTTTCCCTAGATCTGGT 58.999 38.462 5.18 0.00 0.00 4.00
4661 5534 5.198602 ACTCTGGCAATATTTCTTTCCCT 57.801 39.130 0.00 0.00 0.00 4.20
4664 5537 7.370383 TGTTCAACTCTGGCAATATTTCTTTC 58.630 34.615 0.00 0.00 0.00 2.62
4673 5546 1.251251 GCCTGTTCAACTCTGGCAAT 58.749 50.000 12.69 0.00 45.12 3.56
5116 5993 7.405292 ACCTGGTGATCAATGAAAAATAGAGA 58.595 34.615 0.00 0.00 0.00 3.10
5130 6007 0.396435 GTGTGGTGACCTGGTGATCA 59.604 55.000 2.82 0.00 0.00 2.92
5188 6066 2.480224 TAACCGATAACTCTTCGCCG 57.520 50.000 0.00 0.00 35.31 6.46
5190 6068 3.421231 CGTCATAACCGATAACTCTTCGC 59.579 47.826 0.00 0.00 35.31 4.70
5201 6079 4.818642 TGGTTTGATTACGTCATAACCGA 58.181 39.130 8.98 0.00 43.43 4.69
5314 6193 9.419297 GACCTTATGCATATCTCGTTTACATAA 57.581 33.333 7.36 0.00 0.00 1.90
5437 6316 9.712359 GGATTTATACGGTGTTACATTTTCTTC 57.288 33.333 0.00 0.00 0.00 2.87
5456 6335 4.352009 TGTTCATGGGCAACTGGATTTAT 58.648 39.130 0.00 0.00 0.00 1.40
5485 6364 0.834612 TGGTTCTGTGGTCTTCGGTT 59.165 50.000 0.00 0.00 0.00 4.44
5635 6524 1.541233 CCCTTGGCCTACTAGCATTCG 60.541 57.143 3.32 0.00 0.00 3.34
5677 6566 3.603080 TCCGGTAGGTCACCCCCA 61.603 66.667 0.00 0.00 45.52 4.96
5695 6584 2.586357 GTCGCTCGCTTGGATCCC 60.586 66.667 9.90 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.