Multiple sequence alignment - TraesCS6D01G171300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G171300 chr6D 100.000 3405 0 0 3157 6561 157731823 157735227 0.000000e+00 6288.0
1 TraesCS6D01G171300 chr6D 100.000 2703 0 0 1 2703 157728667 157731369 0.000000e+00 4992.0
2 TraesCS6D01G171300 chr6D 89.352 216 21 2 825 1040 382039722 382039935 3.020000e-68 270.0
3 TraesCS6D01G171300 chr6D 88.318 214 24 1 827 1040 76057630 76057418 8.440000e-64 255.0
4 TraesCS6D01G171300 chr6B 94.794 1575 64 10 1040 2600 286992261 286993831 0.000000e+00 2438.0
5 TraesCS6D01G171300 chr6B 94.581 1218 39 9 3452 4660 286994465 286995664 0.000000e+00 1858.0
6 TraesCS6D01G171300 chr6B 91.360 625 27 13 5274 5882 286996173 286996786 0.000000e+00 830.0
7 TraesCS6D01G171300 chr6B 95.792 499 19 2 4734 5231 286995683 286996180 0.000000e+00 804.0
8 TraesCS6D01G171300 chr6B 86.063 696 61 20 5893 6560 198312712 198312025 0.000000e+00 715.0
9 TraesCS6D01G171300 chr6B 91.236 445 28 7 1 434 286991296 286991740 4.380000e-166 595.0
10 TraesCS6D01G171300 chr6B 91.153 373 15 4 430 785 286991899 286992270 2.130000e-134 490.0
11 TraesCS6D01G171300 chr6B 88.627 255 26 2 787 1041 601311451 601311200 2.300000e-79 307.0
12 TraesCS6D01G171300 chr6B 87.500 256 29 2 786 1041 698408269 698408521 6.430000e-75 292.0
13 TraesCS6D01G171300 chr6B 94.737 152 7 1 3281 3431 286994266 286994417 1.100000e-57 235.0
14 TraesCS6D01G171300 chr6B 82.632 190 25 6 491 673 578690526 578690338 1.890000e-35 161.0
15 TraesCS6D01G171300 chr6B 82.540 189 27 4 491 673 690305361 690305173 1.890000e-35 161.0
16 TraesCS6D01G171300 chr6B 81.188 202 35 2 469 670 103650881 103651079 6.810000e-35 159.0
17 TraesCS6D01G171300 chr6A 96.294 1457 40 8 1040 2484 214190964 214189510 0.000000e+00 2379.0
18 TraesCS6D01G171300 chr6A 91.098 1640 66 22 3157 4763 214188962 214187370 0.000000e+00 2146.0
19 TraesCS6D01G171300 chr6A 93.082 1142 43 20 4757 5891 214187038 214185926 0.000000e+00 1639.0
20 TraesCS6D01G171300 chr6A 83.871 217 29 6 825 1040 8127902 8127691 1.120000e-47 202.0
21 TraesCS6D01G171300 chr6A 94.690 113 6 0 673 785 214191067 214190955 6.760000e-40 176.0
22 TraesCS6D01G171300 chr6A 100.000 31 0 0 786 816 8127914 8127884 2.560000e-04 58.4
23 TraesCS6D01G171300 chr2D 91.729 665 44 9 5898 6553 604070398 604069736 0.000000e+00 913.0
24 TraesCS6D01G171300 chr2D 91.014 690 39 12 5894 6561 467055067 467054379 0.000000e+00 909.0
25 TraesCS6D01G171300 chr2D 89.804 255 23 2 786 1040 642413793 642414044 2.280000e-84 324.0
26 TraesCS6D01G171300 chr2D 88.163 245 21 5 5898 6137 604070641 604070400 1.080000e-72 285.0
27 TraesCS6D01G171300 chr1D 90.566 689 39 13 5898 6561 422402526 422403213 0.000000e+00 889.0
28 TraesCS6D01G171300 chr1D 90.308 681 47 10 5899 6561 256589136 256589815 0.000000e+00 874.0
29 TraesCS6D01G171300 chr1D 90.661 257 19 3 786 1040 85195320 85195067 2.930000e-88 337.0
30 TraesCS6D01G171300 chr1D 83.398 259 38 5 786 1042 493034629 493034374 1.100000e-57 235.0
31 TraesCS6D01G171300 chr1D 89.375 160 14 2 785 944 481408585 481408429 1.440000e-46 198.0
32 TraesCS6D01G171300 chr1D 89.308 159 14 2 786 944 109487477 109487322 5.190000e-46 196.0
33 TraesCS6D01G171300 chr1D 97.561 41 1 0 4699 4739 59867994 59868034 3.280000e-08 71.3
34 TraesCS6D01G171300 chr1D 93.182 44 2 1 4699 4742 450147813 450147855 5.490000e-06 63.9
35 TraesCS6D01G171300 chr1D 92.683 41 1 2 791 831 262028326 262028288 2.560000e-04 58.4
36 TraesCS6D01G171300 chr5D 89.942 686 45 13 5898 6561 287816235 287816918 0.000000e+00 863.0
37 TraesCS6D01G171300 chr5D 90.588 255 18 4 786 1040 540036557 540036805 3.790000e-87 333.0
38 TraesCS6D01G171300 chr5D 89.844 256 23 3 786 1041 339622935 339623187 6.340000e-85 326.0
39 TraesCS6D01G171300 chr5D 83.137 255 38 4 786 1040 457987782 457988031 1.840000e-55 228.0
40 TraesCS6D01G171300 chr4D 89.725 691 48 13 5893 6561 231201170 231201859 0.000000e+00 861.0
41 TraesCS6D01G171300 chr4D 90.141 142 14 0 899 1040 386211356 386211215 1.120000e-42 185.0
42 TraesCS6D01G171300 chr4D 88.387 155 17 1 840 994 386211503 386211350 1.120000e-42 185.0
43 TraesCS6D01G171300 chr4A 89.559 680 50 11 5900 6561 32681664 32680988 0.000000e+00 843.0
44 TraesCS6D01G171300 chr4A 90.040 251 22 2 786 1036 18058096 18057849 8.210000e-84 322.0
45 TraesCS6D01G171300 chr4A 89.683 252 15 9 5881 6122 603353606 603353856 1.780000e-80 311.0
46 TraesCS6D01G171300 chr4A 88.235 255 21 2 786 1040 467136849 467137094 4.970000e-76 296.0
47 TraesCS6D01G171300 chr4A 85.714 252 33 2 785 1036 16436172 16436420 5.050000e-66 263.0
48 TraesCS6D01G171300 chr4A 86.328 256 18 9 5897 6137 156796404 156796151 5.050000e-66 263.0
49 TraesCS6D01G171300 chr4A 81.731 208 30 7 470 673 740855178 740854975 4.070000e-37 167.0
50 TraesCS6D01G171300 chr3D 88.904 712 38 18 5889 6561 434816754 434816045 0.000000e+00 839.0
51 TraesCS6D01G171300 chr3D 89.041 219 21 1 825 1040 496113998 496114216 1.080000e-67 268.0
52 TraesCS6D01G171300 chr3D 78.814 118 23 1 556 673 565051254 565051369 1.960000e-10 78.7
53 TraesCS6D01G171300 chr3A 89.474 608 52 7 5957 6561 614272152 614272750 0.000000e+00 758.0
54 TraesCS6D01G171300 chr3A 77.734 256 46 7 420 670 9492495 9492744 5.300000e-31 147.0
55 TraesCS6D01G171300 chr7A 91.373 255 19 2 786 1040 671706850 671706599 4.870000e-91 346.0
56 TraesCS6D01G171300 chr7A 89.844 256 23 2 786 1041 37415588 37415840 6.340000e-85 326.0
57 TraesCS6D01G171300 chr7A 90.361 249 21 2 786 1034 680682038 680682283 2.280000e-84 324.0
58 TraesCS6D01G171300 chr7A 83.099 71 9 2 4658 4727 639360644 639360576 1.980000e-05 62.1
59 TraesCS6D01G171300 chr5A 90.588 255 21 2 786 1040 19973263 19973012 1.050000e-87 335.0
60 TraesCS6D01G171300 chr5A 97.500 40 0 1 4699 4738 685433130 685433092 4.250000e-07 67.6
61 TraesCS6D01G171300 chr7D 90.476 252 21 2 789 1040 126797900 126797652 4.900000e-86 329.0
62 TraesCS6D01G171300 chr7D 89.641 251 23 2 786 1036 515996211 515995964 3.820000e-82 316.0
63 TraesCS6D01G171300 chr7D 88.987 227 23 2 819 1044 27386786 27386561 5.010000e-71 279.0
64 TraesCS6D01G171300 chr7D 81.224 245 39 5 434 673 232325003 232325245 2.410000e-44 191.0
65 TraesCS6D01G171300 chr3B 90.438 251 21 2 786 1036 20321894 20322141 1.760000e-85 327.0
66 TraesCS6D01G171300 chr3B 82.143 84 11 3 4659 4741 11070072 11069992 1.180000e-07 69.4
67 TraesCS6D01G171300 chr7B 82.857 245 36 2 434 673 673660539 673660782 1.430000e-51 215.0
68 TraesCS6D01G171300 chr7B 93.333 45 3 0 4699 4743 84214222 84214178 4.250000e-07 67.6
69 TraesCS6D01G171300 chr5B 82.041 245 38 2 434 673 555192866 555192623 3.100000e-48 204.0
70 TraesCS6D01G171300 chr5B 81.250 208 31 7 470 673 179221918 179221715 1.890000e-35 161.0
71 TraesCS6D01G171300 chr2B 80.755 265 42 6 412 670 154248430 154248691 1.440000e-46 198.0
72 TraesCS6D01G171300 chr2B 81.188 202 35 2 469 670 557242551 557242749 6.810000e-35 159.0
73 TraesCS6D01G171300 chr2B 93.333 45 2 1 4699 4742 237346171 237346127 1.530000e-06 65.8
74 TraesCS6D01G171300 chr1A 82.888 187 25 5 491 670 98019164 98019350 1.890000e-35 161.0
75 TraesCS6D01G171300 chr1B 80.405 148 29 0 526 673 642191486 642191339 5.380000e-21 113.0
76 TraesCS6D01G171300 chr2A 97.500 40 1 0 4699 4738 761415511 761415472 1.180000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G171300 chr6D 157728667 157735227 6560 False 5640.000000 6288 100.000 1 6561 2 chr6D.!!$F2 6560
1 TraesCS6D01G171300 chr6B 286991296 286996786 5490 False 1035.714286 2438 93.379 1 5882 7 chr6B.!!$F3 5881
2 TraesCS6D01G171300 chr6B 198312025 198312712 687 True 715.000000 715 86.063 5893 6560 1 chr6B.!!$R1 667
3 TraesCS6D01G171300 chr6A 214185926 214191067 5141 True 1585.000000 2379 93.791 673 5891 4 chr6A.!!$R2 5218
4 TraesCS6D01G171300 chr2D 467054379 467055067 688 True 909.000000 909 91.014 5894 6561 1 chr2D.!!$R1 667
5 TraesCS6D01G171300 chr2D 604069736 604070641 905 True 599.000000 913 89.946 5898 6553 2 chr2D.!!$R2 655
6 TraesCS6D01G171300 chr1D 422402526 422403213 687 False 889.000000 889 90.566 5898 6561 1 chr1D.!!$F3 663
7 TraesCS6D01G171300 chr1D 256589136 256589815 679 False 874.000000 874 90.308 5899 6561 1 chr1D.!!$F2 662
8 TraesCS6D01G171300 chr5D 287816235 287816918 683 False 863.000000 863 89.942 5898 6561 1 chr5D.!!$F1 663
9 TraesCS6D01G171300 chr4D 231201170 231201859 689 False 861.000000 861 89.725 5893 6561 1 chr4D.!!$F1 668
10 TraesCS6D01G171300 chr4A 32680988 32681664 676 True 843.000000 843 89.559 5900 6561 1 chr4A.!!$R2 661
11 TraesCS6D01G171300 chr3D 434816045 434816754 709 True 839.000000 839 88.904 5889 6561 1 chr3D.!!$R1 672
12 TraesCS6D01G171300 chr3A 614272152 614272750 598 False 758.000000 758 89.474 5957 6561 1 chr3A.!!$F2 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1155 0.030773 TAGCAGCTTCTCATACGCCG 59.969 55.000 0.00 0.00 0.00 6.46 F
977 1169 0.103208 ACGCCGTTGGATCTGAGATC 59.897 55.000 13.96 13.96 0.00 2.75 F
1417 1611 0.321653 GCTGTTCCTGTTCCCACGAT 60.322 55.000 0.00 0.00 0.00 3.73 F
1594 1792 2.096218 GGTGACGTGATTCTGCTTCAAC 60.096 50.000 0.00 0.00 0.00 3.18 F
3439 3648 2.103373 TCGAAGAGGTGCTTGCTAGAT 58.897 47.619 0.00 0.00 36.83 1.98 F
3820 4056 0.031616 TTTTGTTTGTCTGGGCCCCT 60.032 50.000 22.27 0.00 0.00 4.79 F
4020 4269 1.001974 TCTTGCAGTCGTAGTTGGCAT 59.998 47.619 0.00 0.00 34.03 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2303 0.036732 AGGCACCGAATCAGCAGAAA 59.963 50.000 0.00 0.0 0.00 2.52 R
2400 2603 5.007430 CAGCACTACATTAGCCTTGAAGATG 59.993 44.000 0.00 0.0 0.00 2.90 R
3408 3617 2.932614 CACCTCTTCGAGCTGTATTTGG 59.067 50.000 0.00 0.0 0.00 3.28 R
3559 3795 2.912771 ACATGACAACAAGGACAACGA 58.087 42.857 0.00 0.0 0.00 3.85 R
4457 4708 0.734889 CTTCGGCATGATTTTCCGCT 59.265 50.000 0.00 0.0 42.65 5.52 R
4768 5357 0.986019 AGGAATGGACCGGGTATGCA 60.986 55.000 6.32 0.0 34.73 3.96 R
5896 6501 1.129251 CGCACGGACGTTCTTCTAGTA 59.871 52.381 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 1.075896 ATCTCCTCCTCGTCCCCAC 60.076 63.158 0.00 0.00 0.00 4.61
45 48 2.285368 TCCCCACCGCATCTCCTT 60.285 61.111 0.00 0.00 0.00 3.36
133 139 4.171005 CACGACCTTTAGCTCAAATCGTA 58.829 43.478 15.42 0.00 38.93 3.43
136 142 4.863131 CGACCTTTAGCTCAAATCGTAGTT 59.137 41.667 0.00 0.00 0.00 2.24
148 154 6.182627 TCAAATCGTAGTTGGTAGACTAGGA 58.817 40.000 9.12 9.12 45.54 2.94
159 165 7.234988 AGTTGGTAGACTAGGATGTTTAGTTGT 59.765 37.037 0.00 0.00 31.74 3.32
161 167 7.383687 TGGTAGACTAGGATGTTTAGTTGTTG 58.616 38.462 0.00 0.00 31.74 3.33
238 248 7.308435 CAAATTCTCTTGTGGTTGTTATCTCC 58.692 38.462 0.00 0.00 0.00 3.71
252 262 0.171455 ATCTCCTGTGTTCGAGCGAC 59.829 55.000 0.00 0.00 0.00 5.19
290 300 0.378962 GCAACAACACAAGGCACGTA 59.621 50.000 0.00 0.00 0.00 3.57
328 338 4.018597 AGAGAAAGAGATGCTTTGGGTGAT 60.019 41.667 0.00 0.00 46.52 3.06
331 341 3.446442 AGAGATGCTTTGGGTGATTGT 57.554 42.857 0.00 0.00 0.00 2.71
346 356 4.391830 GGTGATTGTCGATTTCTGTTGCTA 59.608 41.667 0.00 0.00 0.00 3.49
347 357 5.316770 GTGATTGTCGATTTCTGTTGCTAC 58.683 41.667 0.00 0.00 0.00 3.58
392 402 9.343994 AGATGGGTATTACTCAGGATATCATTT 57.656 33.333 4.83 0.00 28.45 2.32
434 446 8.959734 CATGTCGTCATGCATTTATCAAATAT 57.040 30.769 9.65 0.00 43.66 1.28
437 449 8.839343 TGTCGTCATGCATTTATCAAATATTCT 58.161 29.630 0.00 0.00 0.00 2.40
438 450 9.669353 GTCGTCATGCATTTATCAAATATTCTT 57.331 29.630 0.00 0.00 0.00 2.52
543 719 2.101783 TGCCATAGTTTGCCATCCAAG 58.898 47.619 0.00 0.00 34.34 3.61
554 730 3.101437 TGCCATCCAAGCAAGATTTGAT 58.899 40.909 0.00 0.00 37.28 2.57
567 743 8.302515 AGCAAGATTTGATATTGAAACCTCAT 57.697 30.769 0.00 0.00 33.49 2.90
590 766 8.054572 TCATTGAGATTCCATCAACCAATTCTA 58.945 33.333 0.00 0.00 39.36 2.10
643 820 8.969260 TCGTATCTACTATAGTTTTCTCACCA 57.031 34.615 11.40 0.00 0.00 4.17
797 989 2.568623 CCTCCCCGGGAAAATATCTG 57.431 55.000 26.32 0.57 0.00 2.90
798 990 1.073923 CCTCCCCGGGAAAATATCTGG 59.926 57.143 26.32 0.00 0.00 3.86
799 991 1.774856 CTCCCCGGGAAAATATCTGGT 59.225 52.381 26.32 0.00 0.00 4.00
800 992 1.493022 TCCCCGGGAAAATATCTGGTG 59.507 52.381 26.32 0.00 0.00 4.17
801 993 1.318576 CCCGGGAAAATATCTGGTGC 58.681 55.000 18.48 0.00 0.00 5.01
802 994 1.133792 CCCGGGAAAATATCTGGTGCT 60.134 52.381 18.48 0.00 0.00 4.40
803 995 2.222027 CCGGGAAAATATCTGGTGCTC 58.778 52.381 0.00 0.00 0.00 4.26
804 996 2.222027 CGGGAAAATATCTGGTGCTCC 58.778 52.381 0.00 0.00 0.00 4.70
805 997 2.222027 GGGAAAATATCTGGTGCTCCG 58.778 52.381 0.00 0.00 36.30 4.63
806 998 2.222027 GGAAAATATCTGGTGCTCCGG 58.778 52.381 7.35 7.35 41.27 5.14
807 999 2.222027 GAAAATATCTGGTGCTCCGGG 58.778 52.381 13.60 2.77 40.36 5.73
808 1000 1.507140 AAATATCTGGTGCTCCGGGA 58.493 50.000 13.60 8.10 40.36 5.14
809 1001 1.051812 AATATCTGGTGCTCCGGGAG 58.948 55.000 19.95 19.95 40.36 4.30
818 1010 4.356979 CTCCGGGAGCACCTAAGA 57.643 61.111 11.83 0.00 36.97 2.10
819 1011 2.119886 CTCCGGGAGCACCTAAGAG 58.880 63.158 11.83 0.48 36.97 2.85
820 1012 2.022240 CTCCGGGAGCACCTAAGAGC 62.022 65.000 11.83 0.00 36.97 4.09
821 1013 2.060980 CCGGGAGCACCTAAGAGCT 61.061 63.158 0.00 0.00 43.17 4.09
822 1014 1.617947 CCGGGAGCACCTAAGAGCTT 61.618 60.000 0.00 0.00 40.30 3.74
823 1015 1.112113 CGGGAGCACCTAAGAGCTTA 58.888 55.000 0.00 0.00 40.30 3.09
824 1016 1.067821 CGGGAGCACCTAAGAGCTTAG 59.932 57.143 9.73 9.73 40.30 2.18
835 1027 2.982130 AGCTTAGGTGCTCCCGTG 59.018 61.111 0.00 0.00 39.34 4.94
836 1028 1.913762 AGCTTAGGTGCTCCCGTGT 60.914 57.895 0.00 0.00 39.34 4.49
837 1029 1.741770 GCTTAGGTGCTCCCGTGTG 60.742 63.158 0.00 0.00 38.74 3.82
838 1030 1.972198 CTTAGGTGCTCCCGTGTGA 59.028 57.895 0.00 0.00 38.74 3.58
839 1031 0.389948 CTTAGGTGCTCCCGTGTGAC 60.390 60.000 0.00 0.00 38.74 3.67
840 1032 1.823169 TTAGGTGCTCCCGTGTGACC 61.823 60.000 0.00 0.00 38.74 4.02
841 1033 2.725127 TAGGTGCTCCCGTGTGACCT 62.725 60.000 0.00 0.00 40.26 3.85
842 1034 2.048127 GTGCTCCCGTGTGACCTC 60.048 66.667 0.00 0.00 0.00 3.85
843 1035 2.523168 TGCTCCCGTGTGACCTCA 60.523 61.111 0.00 0.00 0.00 3.86
844 1036 2.262915 GCTCCCGTGTGACCTCAG 59.737 66.667 0.00 0.00 0.00 3.35
845 1037 2.262915 CTCCCGTGTGACCTCAGC 59.737 66.667 0.00 0.00 0.00 4.26
846 1038 3.302347 CTCCCGTGTGACCTCAGCC 62.302 68.421 0.00 0.00 0.00 4.85
847 1039 4.742201 CCCGTGTGACCTCAGCCG 62.742 72.222 0.00 0.00 0.00 5.52
848 1040 3.991051 CCGTGTGACCTCAGCCGT 61.991 66.667 0.00 0.00 0.00 5.68
849 1041 2.029073 CGTGTGACCTCAGCCGTT 59.971 61.111 0.00 0.00 0.00 4.44
850 1042 2.310233 CGTGTGACCTCAGCCGTTG 61.310 63.158 0.00 0.00 0.00 4.10
851 1043 1.961277 GTGTGACCTCAGCCGTTGG 60.961 63.158 0.00 0.00 0.00 3.77
852 1044 2.137528 TGTGACCTCAGCCGTTGGA 61.138 57.895 0.00 0.00 0.00 3.53
853 1045 1.296715 GTGACCTCAGCCGTTGGAT 59.703 57.895 0.00 0.00 0.00 3.41
854 1046 0.741221 GTGACCTCAGCCGTTGGATC 60.741 60.000 0.00 0.00 0.00 3.36
855 1047 0.904865 TGACCTCAGCCGTTGGATCT 60.905 55.000 0.00 0.00 0.00 2.75
856 1048 0.179097 GACCTCAGCCGTTGGATCTC 60.179 60.000 0.00 0.00 0.00 2.75
857 1049 0.904865 ACCTCAGCCGTTGGATCTCA 60.905 55.000 0.00 0.00 0.00 3.27
858 1050 0.250234 CCTCAGCCGTTGGATCTCAA 59.750 55.000 0.00 0.00 0.00 3.02
859 1051 1.339055 CCTCAGCCGTTGGATCTCAAA 60.339 52.381 0.00 0.00 37.08 2.69
860 1052 2.636830 CTCAGCCGTTGGATCTCAAAT 58.363 47.619 0.00 0.00 37.08 2.32
861 1053 2.611292 CTCAGCCGTTGGATCTCAAATC 59.389 50.000 0.00 0.00 37.08 2.17
862 1054 1.672881 CAGCCGTTGGATCTCAAATCC 59.327 52.381 0.00 0.00 37.08 3.01
863 1055 1.281867 AGCCGTTGGATCTCAAATCCA 59.718 47.619 2.63 2.63 45.71 3.41
869 1061 3.726557 TGGATCTCAAATCCAACAGCT 57.273 42.857 4.30 0.00 44.54 4.24
870 1062 3.614092 TGGATCTCAAATCCAACAGCTC 58.386 45.455 4.30 0.00 44.54 4.09
871 1063 2.948315 GGATCTCAAATCCAACAGCTCC 59.052 50.000 0.00 0.00 38.09 4.70
872 1064 3.371380 GGATCTCAAATCCAACAGCTCCT 60.371 47.826 0.00 0.00 38.09 3.69
873 1065 3.063510 TCTCAAATCCAACAGCTCCTG 57.936 47.619 0.00 0.00 37.52 3.86
875 1067 2.486982 CTCAAATCCAACAGCTCCTGTG 59.513 50.000 0.00 0.00 44.62 3.66
876 1068 2.106338 TCAAATCCAACAGCTCCTGTGA 59.894 45.455 0.00 0.00 44.62 3.58
877 1069 2.486472 AATCCAACAGCTCCTGTGAG 57.514 50.000 0.00 0.00 44.62 3.51
878 1070 1.649321 ATCCAACAGCTCCTGTGAGA 58.351 50.000 0.00 0.03 44.62 3.27
879 1071 1.649321 TCCAACAGCTCCTGTGAGAT 58.351 50.000 0.00 0.00 44.62 2.75
884 1076 3.272925 AGCTCCTGTGAGATGACGA 57.727 52.632 0.00 0.00 41.42 4.20
885 1077 1.550327 AGCTCCTGTGAGATGACGAA 58.450 50.000 0.00 0.00 41.42 3.85
886 1078 1.203523 AGCTCCTGTGAGATGACGAAC 59.796 52.381 0.00 0.00 41.42 3.95
887 1079 1.067565 GCTCCTGTGAGATGACGAACA 60.068 52.381 0.00 0.00 41.42 3.18
888 1080 2.417924 GCTCCTGTGAGATGACGAACAT 60.418 50.000 0.00 0.00 41.42 2.71
889 1081 3.854666 CTCCTGTGAGATGACGAACATT 58.145 45.455 0.00 0.00 41.42 2.71
890 1082 4.248859 CTCCTGTGAGATGACGAACATTT 58.751 43.478 0.00 0.00 41.42 2.32
891 1083 4.641396 TCCTGTGAGATGACGAACATTTT 58.359 39.130 0.00 0.00 39.56 1.82
892 1084 5.063204 TCCTGTGAGATGACGAACATTTTT 58.937 37.500 0.00 0.00 39.56 1.94
893 1085 6.227522 TCCTGTGAGATGACGAACATTTTTA 58.772 36.000 0.00 0.00 39.56 1.52
894 1086 6.147164 TCCTGTGAGATGACGAACATTTTTAC 59.853 38.462 0.00 0.00 39.56 2.01
895 1087 6.073276 CCTGTGAGATGACGAACATTTTTACA 60.073 38.462 0.00 0.95 39.56 2.41
896 1088 7.252965 TGTGAGATGACGAACATTTTTACAA 57.747 32.000 0.00 0.00 39.56 2.41
897 1089 7.698628 TGTGAGATGACGAACATTTTTACAAA 58.301 30.769 0.00 0.00 39.56 2.83
898 1090 8.184848 TGTGAGATGACGAACATTTTTACAAAA 58.815 29.630 0.00 0.00 39.56 2.44
899 1091 9.015577 GTGAGATGACGAACATTTTTACAAAAA 57.984 29.630 2.57 2.57 41.59 1.94
922 1114 7.576861 AAAAACCCTCGTAGAATCTGAAAAA 57.423 32.000 0.00 0.00 34.09 1.94
923 1115 7.761038 AAAACCCTCGTAGAATCTGAAAAAT 57.239 32.000 0.00 0.00 34.09 1.82
924 1116 6.743575 AACCCTCGTAGAATCTGAAAAATG 57.256 37.500 0.00 0.00 34.09 2.32
925 1117 6.049955 ACCCTCGTAGAATCTGAAAAATGA 57.950 37.500 0.00 0.00 34.09 2.57
926 1118 6.472887 ACCCTCGTAGAATCTGAAAAATGAA 58.527 36.000 0.00 0.00 34.09 2.57
927 1119 6.371825 ACCCTCGTAGAATCTGAAAAATGAAC 59.628 38.462 0.00 0.00 34.09 3.18
928 1120 6.371548 CCCTCGTAGAATCTGAAAAATGAACA 59.628 38.462 0.00 0.00 34.09 3.18
929 1121 7.066284 CCCTCGTAGAATCTGAAAAATGAACAT 59.934 37.037 0.00 0.00 34.09 2.71
930 1122 9.098355 CCTCGTAGAATCTGAAAAATGAACATA 57.902 33.333 0.00 0.00 34.09 2.29
962 1154 2.447244 ATAGCAGCTTCTCATACGCC 57.553 50.000 0.00 0.00 0.00 5.68
963 1155 0.030773 TAGCAGCTTCTCATACGCCG 59.969 55.000 0.00 0.00 0.00 6.46
964 1156 1.519455 GCAGCTTCTCATACGCCGT 60.519 57.895 0.00 0.00 0.00 5.68
965 1157 1.084370 GCAGCTTCTCATACGCCGTT 61.084 55.000 0.00 0.00 0.00 4.44
966 1158 0.647410 CAGCTTCTCATACGCCGTTG 59.353 55.000 0.00 0.00 0.00 4.10
967 1159 0.460284 AGCTTCTCATACGCCGTTGG 60.460 55.000 0.00 0.00 0.00 3.77
968 1160 0.459585 GCTTCTCATACGCCGTTGGA 60.460 55.000 0.00 0.00 0.00 3.53
969 1161 1.806623 GCTTCTCATACGCCGTTGGAT 60.807 52.381 0.00 0.00 0.00 3.41
970 1162 2.128035 CTTCTCATACGCCGTTGGATC 58.872 52.381 0.00 0.00 0.00 3.36
971 1163 1.399714 TCTCATACGCCGTTGGATCT 58.600 50.000 0.00 0.00 0.00 2.75
972 1164 1.067060 TCTCATACGCCGTTGGATCTG 59.933 52.381 0.00 0.00 0.00 2.90
973 1165 1.067060 CTCATACGCCGTTGGATCTGA 59.933 52.381 0.00 0.00 0.00 3.27
974 1166 1.067060 TCATACGCCGTTGGATCTGAG 59.933 52.381 0.00 0.00 0.00 3.35
975 1167 1.067060 CATACGCCGTTGGATCTGAGA 59.933 52.381 0.00 0.00 0.00 3.27
976 1168 1.399714 TACGCCGTTGGATCTGAGAT 58.600 50.000 0.00 0.00 0.00 2.75
977 1169 0.103208 ACGCCGTTGGATCTGAGATC 59.897 55.000 13.96 13.96 0.00 2.75
978 1170 0.598680 CGCCGTTGGATCTGAGATCC 60.599 60.000 30.07 30.07 38.66 3.36
979 1171 0.598680 GCCGTTGGATCTGAGATCCG 60.599 60.000 30.38 20.55 41.03 4.18
980 1172 1.032794 CCGTTGGATCTGAGATCCGA 58.967 55.000 30.38 27.53 41.03 4.55
981 1173 1.615883 CCGTTGGATCTGAGATCCGAT 59.384 52.381 29.18 0.00 41.03 4.18
982 1174 2.608998 CCGTTGGATCTGAGATCCGATG 60.609 54.545 31.43 31.43 41.03 3.84
983 1175 2.608998 CGTTGGATCTGAGATCCGATGG 60.609 54.545 31.01 22.79 41.03 3.51
984 1176 0.972134 TGGATCTGAGATCCGATGGC 59.028 55.000 30.38 11.19 41.03 4.40
985 1177 1.265236 GGATCTGAGATCCGATGGCT 58.735 55.000 24.42 0.00 0.00 4.75
986 1178 1.204467 GGATCTGAGATCCGATGGCTC 59.796 57.143 24.42 0.77 0.00 4.70
987 1179 1.891811 GATCTGAGATCCGATGGCTCA 59.108 52.381 11.36 0.00 37.17 4.26
988 1180 1.780503 TCTGAGATCCGATGGCTCAA 58.219 50.000 0.00 0.00 38.12 3.02
989 1181 2.110578 TCTGAGATCCGATGGCTCAAA 58.889 47.619 0.00 0.00 38.12 2.69
990 1182 2.501316 TCTGAGATCCGATGGCTCAAAA 59.499 45.455 0.00 0.00 38.12 2.44
991 1183 2.871022 CTGAGATCCGATGGCTCAAAAG 59.129 50.000 0.00 0.00 38.12 2.27
1002 1194 2.763249 GCTCAAAAGCCCGTATCATG 57.237 50.000 0.00 0.00 43.10 3.07
1003 1195 1.334869 GCTCAAAAGCCCGTATCATGG 59.665 52.381 0.00 0.00 43.10 3.66
1010 1202 4.779475 CCGTATCATGGGAGCACC 57.221 61.111 0.00 0.00 40.81 5.01
1011 1203 2.136791 CCGTATCATGGGAGCACCT 58.863 57.895 0.00 0.00 41.11 4.00
1012 1204 1.338107 CCGTATCATGGGAGCACCTA 58.662 55.000 0.00 0.00 41.11 3.08
1013 1205 1.902508 CCGTATCATGGGAGCACCTAT 59.097 52.381 0.00 0.00 41.11 2.57
1026 1218 2.440539 CACCTATGCTCCCGTATCAC 57.559 55.000 0.00 0.00 0.00 3.06
1027 1219 1.686587 CACCTATGCTCCCGTATCACA 59.313 52.381 0.00 0.00 0.00 3.58
1028 1220 1.964223 ACCTATGCTCCCGTATCACAG 59.036 52.381 0.00 0.00 0.00 3.66
1029 1221 1.273606 CCTATGCTCCCGTATCACAGG 59.726 57.143 0.00 0.00 0.00 4.00
1030 1222 2.239400 CTATGCTCCCGTATCACAGGA 58.761 52.381 0.00 0.00 0.00 3.86
1031 1223 1.722034 ATGCTCCCGTATCACAGGAT 58.278 50.000 0.00 0.00 37.55 3.24
1032 1224 2.375014 TGCTCCCGTATCACAGGATA 57.625 50.000 0.00 0.00 34.89 2.59
1325 1518 1.591863 GCTCCAAGATCGCCGTACC 60.592 63.158 0.00 0.00 0.00 3.34
1326 1519 1.299165 CTCCAAGATCGCCGTACCG 60.299 63.158 0.00 0.00 0.00 4.02
1327 1520 2.001361 CTCCAAGATCGCCGTACCGT 62.001 60.000 0.00 0.00 0.00 4.83
1404 1598 1.869767 CACAGTTCTGACCTGCTGTTC 59.130 52.381 1.76 0.00 39.82 3.18
1405 1599 1.202698 ACAGTTCTGACCTGCTGTTCC 60.203 52.381 1.76 0.00 38.86 3.62
1417 1611 0.321653 GCTGTTCCTGTTCCCACGAT 60.322 55.000 0.00 0.00 0.00 3.73
1578 1775 2.738846 CTGAATGTGCTGTAGTGGTGAC 59.261 50.000 0.00 0.00 0.00 3.67
1594 1792 2.096218 GGTGACGTGATTCTGCTTCAAC 60.096 50.000 0.00 0.00 0.00 3.18
1620 1818 2.210116 ACGCCGATGGTGATTTATGTC 58.790 47.619 2.95 0.00 36.58 3.06
1720 1918 6.876257 GGTGACTACTCTCTGTTTCATTCATT 59.124 38.462 0.00 0.00 0.00 2.57
1767 1968 5.551760 AACGAATTATGCTTTGGACTGAG 57.448 39.130 0.00 0.00 0.00 3.35
1927 2128 3.876309 TTAGATATTGGCCAGGGTTCC 57.124 47.619 5.11 0.00 0.00 3.62
1963 2164 6.894682 TGGATGTATTTCTGCTACACCAATA 58.105 36.000 0.00 0.00 32.41 1.90
1969 2170 8.318412 TGTATTTCTGCTACACCAATAGAGAAA 58.682 33.333 0.00 0.00 35.37 2.52
1972 2173 4.081087 TCTGCTACACCAATAGAGAAACCC 60.081 45.833 0.00 0.00 0.00 4.11
1975 2176 5.427157 TGCTACACCAATAGAGAAACCCATA 59.573 40.000 0.00 0.00 0.00 2.74
2074 2276 6.159988 CAGTTTACTCTCTTGGTGGTTCTAG 58.840 44.000 0.00 0.00 0.00 2.43
2101 2303 2.856222 CTCTGTGTGGCTCCTTTTCTT 58.144 47.619 0.00 0.00 0.00 2.52
2243 2445 2.281139 GCTGAATCTAGGGCGGCC 60.281 66.667 22.67 22.67 0.00 6.13
2302 2504 6.294731 GGCCTTGGCTATGAGGTAATTATTTG 60.295 42.308 11.71 0.00 35.42 2.32
2400 2603 7.061094 GTGCAGTTACTTCTTAATGCAATTGAC 59.939 37.037 10.34 1.02 44.43 3.18
2641 2849 5.893824 TGATGGTACTCAGAGATCTTAAGCA 59.106 40.000 3.79 0.00 0.00 3.91
2648 2856 7.416964 ACTCAGAGATCTTAAGCATGTAAGT 57.583 36.000 3.79 0.00 33.55 2.24
2676 2884 4.870363 ACATTTGTTTAACGCTGCAGATT 58.130 34.783 20.43 13.35 0.00 2.40
3189 3397 6.620877 ATCATCCCTAGTAAACTGTGACAA 57.379 37.500 0.00 0.00 0.00 3.18
3245 3453 3.356529 CAGTTAATCTGCCCTCTGGTT 57.643 47.619 0.00 0.00 37.36 3.67
3250 3458 6.378280 CAGTTAATCTGCCCTCTGGTTTAAAT 59.622 38.462 0.00 0.00 37.36 1.40
3259 3467 5.009410 GCCCTCTGGTTTAAATGATCATCAG 59.991 44.000 9.06 10.69 0.00 2.90
3408 3617 7.807977 TTATCATTCCAACTCCTAATTCTGC 57.192 36.000 0.00 0.00 0.00 4.26
3439 3648 2.103373 TCGAAGAGGTGCTTGCTAGAT 58.897 47.619 0.00 0.00 36.83 1.98
3491 3727 3.689347 TGGATGCAAAACTGCTGATACT 58.311 40.909 0.00 0.00 35.49 2.12
3506 3742 7.653713 ACTGCTGATACTATAAAAGATGAACCG 59.346 37.037 0.00 0.00 0.00 4.44
3525 3761 2.624636 CGGCCGTTTGTTAGGATTAGT 58.375 47.619 19.50 0.00 0.00 2.24
3559 3795 5.920193 AATAATAATGCTGGTGTGCTTGT 57.080 34.783 0.00 0.00 0.00 3.16
3613 3849 5.178096 TGTGGAGTCATGGATAAACATGT 57.822 39.130 0.00 0.00 46.39 3.21
3735 3971 8.697846 TCGATGTCGTAAAACTTCATAAATCT 57.302 30.769 2.04 0.00 40.80 2.40
3816 4052 4.956085 AGGTAAATTTTGTTTGTCTGGGC 58.044 39.130 0.00 0.00 0.00 5.36
3817 4053 4.062293 GGTAAATTTTGTTTGTCTGGGCC 58.938 43.478 0.00 0.00 0.00 5.80
3818 4054 2.928801 AATTTTGTTTGTCTGGGCCC 57.071 45.000 17.59 17.59 0.00 5.80
3819 4055 1.055849 ATTTTGTTTGTCTGGGCCCC 58.944 50.000 22.27 3.99 0.00 5.80
3820 4056 0.031616 TTTTGTTTGTCTGGGCCCCT 60.032 50.000 22.27 0.00 0.00 4.79
3828 4069 1.774217 TCTGGGCCCCTCAGTGTTT 60.774 57.895 22.27 0.00 34.15 2.83
3852 4093 4.698304 TGATTTTGGTGTTCGTAAGGATCC 59.302 41.667 2.48 2.48 38.47 3.36
3934 4178 7.035840 ACTGCAAGGCTTATCATCAAATTAG 57.964 36.000 0.00 0.00 39.30 1.73
3967 4211 6.855763 AAATTGAGTTTATCCATCCTTGCA 57.144 33.333 0.00 0.00 0.00 4.08
3973 4217 6.006275 AGTTTATCCATCCTTGCACTATGT 57.994 37.500 0.00 0.00 0.00 2.29
3990 4239 4.895297 ACTATGTCCCTTTATGCCCAATTG 59.105 41.667 0.00 0.00 0.00 2.32
4020 4269 1.001974 TCTTGCAGTCGTAGTTGGCAT 59.998 47.619 0.00 0.00 34.03 4.40
4021 4270 1.806542 CTTGCAGTCGTAGTTGGCATT 59.193 47.619 0.00 0.00 34.03 3.56
4022 4271 1.890876 TGCAGTCGTAGTTGGCATTT 58.109 45.000 0.00 0.00 0.00 2.32
4023 4272 2.226330 TGCAGTCGTAGTTGGCATTTT 58.774 42.857 0.00 0.00 0.00 1.82
4024 4273 2.621055 TGCAGTCGTAGTTGGCATTTTT 59.379 40.909 0.00 0.00 0.00 1.94
4321 4570 9.457436 AATAATTTCGAGGTAATACCAACTGTT 57.543 29.630 12.54 2.35 41.95 3.16
4356 4606 1.802365 GGTTAAGTGTTACAGCCACGG 59.198 52.381 0.00 0.00 37.88 4.94
4379 4630 1.966451 GTGGCAAGGTCGGGTTCTG 60.966 63.158 0.00 0.00 0.00 3.02
4446 4697 3.377759 CCGCCCGCCCATGAAAAA 61.378 61.111 0.00 0.00 0.00 1.94
4589 4840 8.292448 ACTCAGCAATTCAAGTATACAAGTTTG 58.708 33.333 5.50 1.05 0.00 2.93
4693 4944 9.995003 ATAAGGCTCTCATATTTCTTTACAGAG 57.005 33.333 0.00 0.00 0.00 3.35
4694 4945 6.825610 AGGCTCTCATATTTCTTTACAGAGG 58.174 40.000 0.00 0.00 0.00 3.69
4695 4946 5.994668 GGCTCTCATATTTCTTTACAGAGGG 59.005 44.000 0.00 0.00 0.00 4.30
4696 4947 5.994668 GCTCTCATATTTCTTTACAGAGGGG 59.005 44.000 0.00 0.00 0.00 4.79
4697 4948 6.500589 TCTCATATTTCTTTACAGAGGGGG 57.499 41.667 0.00 0.00 0.00 5.40
4724 4975 9.321562 TCTAAACGCCCTTATATTTCTTTACAG 57.678 33.333 0.00 0.00 0.00 2.74
4728 4979 5.701290 CGCCCTTATATTTCTTTACAGAGGG 59.299 44.000 0.00 0.00 43.30 4.30
4821 5410 1.367346 TGGGTCTTGCTACCATTGGA 58.633 50.000 10.37 0.00 41.67 3.53
4931 5520 2.885894 CCCCGACTAGAAGTAGATCACC 59.114 54.545 0.00 0.00 0.00 4.02
4961 5550 1.476891 CGCTACTCAACCTAAGCCTGA 59.523 52.381 0.00 0.00 0.00 3.86
5139 5729 5.000570 ACTGTTACTGTCCTAGGAGAAGT 57.999 43.478 23.96 23.96 0.00 3.01
5233 5823 1.815840 TGTGCGTTTTCCGACTGCA 60.816 52.632 0.00 0.00 39.56 4.41
5240 5830 2.734606 CGTTTTCCGACTGCAACAGATA 59.265 45.455 0.78 0.00 39.56 1.98
5245 5835 7.116376 CGTTTTCCGACTGCAACAGATATATAT 59.884 37.037 0.78 0.00 39.56 0.86
5246 5836 9.419297 GTTTTCCGACTGCAACAGATATATATA 57.581 33.333 0.78 0.00 35.18 0.86
5247 5837 9.639601 TTTTCCGACTGCAACAGATATATATAG 57.360 33.333 0.78 0.00 35.18 1.31
5248 5838 6.796426 TCCGACTGCAACAGATATATATAGC 58.204 40.000 0.78 0.00 35.18 2.97
5250 5840 7.068716 TCCGACTGCAACAGATATATATAGCAT 59.931 37.037 10.48 0.00 35.18 3.79
5251 5841 8.352942 CCGACTGCAACAGATATATATAGCATA 58.647 37.037 10.48 0.00 35.18 3.14
5279 5869 9.778993 CAAATCGTTTTATGTCTTCATTCTCAT 57.221 29.630 0.00 0.00 35.70 2.90
5294 5884 6.003326 TCATTCTCATTAGGCAAAACTGTCA 58.997 36.000 0.00 0.00 0.00 3.58
5466 6068 4.498682 GGACCTAACATTCTGCATGCATTC 60.499 45.833 22.97 0.00 36.14 2.67
5576 6178 2.047560 GACCCGGTTCGAGGTTGG 60.048 66.667 0.00 0.00 36.17 3.77
5646 6248 5.065090 CGAAATGGATACTCTGTGCATTTGA 59.935 40.000 9.73 0.00 44.25 2.69
5661 6263 4.168760 GCATTTGATAACTGGAACACTGC 58.831 43.478 0.00 0.00 0.00 4.40
5662 6264 4.082571 GCATTTGATAACTGGAACACTGCT 60.083 41.667 0.00 0.00 0.00 4.24
5663 6265 5.396484 CATTTGATAACTGGAACACTGCTG 58.604 41.667 0.00 0.00 0.00 4.41
5664 6266 3.057969 TGATAACTGGAACACTGCTGG 57.942 47.619 0.00 0.00 0.00 4.85
5665 6267 2.371841 TGATAACTGGAACACTGCTGGT 59.628 45.455 0.00 0.00 0.00 4.00
5666 6268 3.580895 TGATAACTGGAACACTGCTGGTA 59.419 43.478 0.00 0.00 0.00 3.25
5667 6269 4.041075 TGATAACTGGAACACTGCTGGTAA 59.959 41.667 0.00 0.00 0.00 2.85
5668 6270 3.290948 AACTGGAACACTGCTGGTAAA 57.709 42.857 0.00 0.00 0.00 2.01
5669 6271 2.851195 ACTGGAACACTGCTGGTAAAG 58.149 47.619 0.00 0.00 0.00 1.85
5689 6291 2.298163 AGCTGAAAAGCTGAATGGGTTG 59.702 45.455 0.00 0.00 44.44 3.77
5825 6428 3.472283 TTGTACGCTGTTGGGAACTAA 57.528 42.857 0.00 0.00 0.00 2.24
5826 6429 3.034721 TGTACGCTGTTGGGAACTAAG 57.965 47.619 0.00 0.00 0.00 2.18
5827 6430 2.629137 TGTACGCTGTTGGGAACTAAGA 59.371 45.455 0.00 0.00 0.00 2.10
5830 6433 4.755266 ACGCTGTTGGGAACTAAGATAT 57.245 40.909 0.00 0.00 0.00 1.63
5831 6434 5.864418 ACGCTGTTGGGAACTAAGATATA 57.136 39.130 0.00 0.00 0.00 0.86
5832 6435 5.598769 ACGCTGTTGGGAACTAAGATATAC 58.401 41.667 0.00 0.00 0.00 1.47
5887 6492 8.190326 ACTGTATCCAGATATAAACATCGGAA 57.810 34.615 0.00 0.00 41.50 4.30
5891 6496 9.790389 GTATCCAGATATAAACATCGGAACTAG 57.210 37.037 0.00 0.00 34.00 2.57
5892 6497 7.834881 TCCAGATATAAACATCGGAACTAGT 57.165 36.000 0.00 0.00 30.16 2.57
5893 6498 8.246430 TCCAGATATAAACATCGGAACTAGTT 57.754 34.615 8.13 8.13 30.16 2.24
5894 6499 9.358406 TCCAGATATAAACATCGGAACTAGTTA 57.642 33.333 8.42 0.00 30.16 2.24
6037 6889 1.290732 CTCTCTCCCTCCCTCTTCCTT 59.709 57.143 0.00 0.00 0.00 3.36
6116 7018 9.301153 GACCATAATTCATTTATTTCACACACC 57.699 33.333 0.00 0.00 0.00 4.16
6203 7113 0.250945 TGTAAATCGGCCAGCCACAA 60.251 50.000 9.78 0.00 35.37 3.33
6210 7120 1.832167 GGCCAGCCACAACTCCAAA 60.832 57.895 3.12 0.00 35.81 3.28
6522 7467 8.742125 AGGAAAGGGAAGATCATATACATGTA 57.258 34.615 8.27 8.27 33.57 2.29
6557 7502 8.691661 GGAGTTTATTTATTGCTCCCTCAATA 57.308 34.615 0.00 0.00 39.69 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 16 0.825840 GGGGACGAGGAGGAGATCTG 60.826 65.000 0.00 0.00 0.00 2.90
34 37 1.454479 ATGGCCAAAGGAGATGCGG 60.454 57.895 10.96 0.00 0.00 5.69
81 84 2.049156 CTGACGCGAACAGAGGCA 60.049 61.111 24.69 0.00 37.54 4.75
87 90 3.493830 AACGGCTCTGACGCGAACA 62.494 57.895 15.93 11.98 37.73 3.18
116 122 4.935808 ACCAACTACGATTTGAGCTAAAGG 59.064 41.667 0.00 0.00 0.00 3.11
133 139 7.234988 ACAACTAAACATCCTAGTCTACCAACT 59.765 37.037 0.00 0.00 0.00 3.16
136 142 7.015877 ACAACAACTAAACATCCTAGTCTACCA 59.984 37.037 0.00 0.00 0.00 3.25
172 178 8.838365 TGATGCAGCATTTTTATTTTCTGTTTT 58.162 25.926 9.90 0.00 0.00 2.43
207 217 4.098914 ACCACAAGAGAATTTGGTGCTA 57.901 40.909 0.00 0.00 40.96 3.49
252 262 1.001815 GCAGCTAGCTACCTTCTCTCG 60.002 57.143 18.86 1.66 41.15 4.04
328 338 4.627058 TCAGTAGCAACAGAAATCGACAA 58.373 39.130 0.00 0.00 0.00 3.18
331 341 6.801539 AAATTCAGTAGCAACAGAAATCGA 57.198 33.333 0.00 0.00 35.12 3.59
361 371 4.654262 TCCTGAGTAATACCCATCTTCCAC 59.346 45.833 0.00 0.00 0.00 4.02
362 372 4.890988 TCCTGAGTAATACCCATCTTCCA 58.109 43.478 0.00 0.00 0.00 3.53
363 373 7.400339 TGATATCCTGAGTAATACCCATCTTCC 59.600 40.741 0.00 0.00 0.00 3.46
392 402 4.185394 GACATGTGTCTCGTCTCTCTCTA 58.815 47.826 1.15 0.00 41.65 2.43
543 719 8.814235 CAATGAGGTTTCAATATCAAATCTTGC 58.186 33.333 0.00 0.00 36.78 4.01
554 730 8.054572 TGATGGAATCTCAATGAGGTTTCAATA 58.945 33.333 20.01 10.01 41.04 1.90
567 743 8.054572 TCATAGAATTGGTTGATGGAATCTCAA 58.945 33.333 0.00 0.00 45.81 3.02
590 766 1.825090 TCGCTTGTTTGGATGCTCAT 58.175 45.000 0.00 0.00 0.00 2.90
778 970 1.073923 CCAGATATTTTCCCGGGGAGG 59.926 57.143 23.50 3.00 40.63 4.30
779 971 1.774856 ACCAGATATTTTCCCGGGGAG 59.225 52.381 23.50 0.00 31.21 4.30
780 972 1.493022 CACCAGATATTTTCCCGGGGA 59.507 52.381 23.50 12.99 0.00 4.81
781 973 1.981256 CACCAGATATTTTCCCGGGG 58.019 55.000 23.50 6.77 0.00 5.73
782 974 1.133792 AGCACCAGATATTTTCCCGGG 60.134 52.381 16.85 16.85 0.00 5.73
783 975 2.222027 GAGCACCAGATATTTTCCCGG 58.778 52.381 0.00 0.00 0.00 5.73
784 976 2.222027 GGAGCACCAGATATTTTCCCG 58.778 52.381 0.00 0.00 35.97 5.14
785 977 2.222027 CGGAGCACCAGATATTTTCCC 58.778 52.381 0.00 0.00 35.59 3.97
786 978 2.222027 CCGGAGCACCAGATATTTTCC 58.778 52.381 0.00 0.00 35.59 3.13
787 979 2.158813 TCCCGGAGCACCAGATATTTTC 60.159 50.000 0.73 0.00 35.59 2.29
788 980 1.843851 TCCCGGAGCACCAGATATTTT 59.156 47.619 0.73 0.00 35.59 1.82
789 981 1.417890 CTCCCGGAGCACCAGATATTT 59.582 52.381 0.73 0.00 35.59 1.40
790 982 1.051812 CTCCCGGAGCACCAGATATT 58.948 55.000 0.73 0.00 35.59 1.28
791 983 2.751991 CTCCCGGAGCACCAGATAT 58.248 57.895 0.73 0.00 35.59 1.63
792 984 4.277552 CTCCCGGAGCACCAGATA 57.722 61.111 0.73 0.00 35.59 1.98
801 993 2.022240 GCTCTTAGGTGCTCCCGGAG 62.022 65.000 10.41 10.41 38.74 4.63
802 994 2.058595 GCTCTTAGGTGCTCCCGGA 61.059 63.158 0.73 0.00 38.74 5.14
803 995 1.617947 AAGCTCTTAGGTGCTCCCGG 61.618 60.000 1.59 0.00 40.78 5.73
804 996 1.067821 CTAAGCTCTTAGGTGCTCCCG 59.932 57.143 1.59 0.00 40.78 5.14
805 997 2.900716 CTAAGCTCTTAGGTGCTCCC 57.099 55.000 1.59 0.00 40.78 4.30
819 1011 1.741770 CACACGGGAGCACCTAAGC 60.742 63.158 0.00 0.00 36.97 3.09
820 1012 0.389948 GTCACACGGGAGCACCTAAG 60.390 60.000 0.00 0.00 36.97 2.18
821 1013 1.669440 GTCACACGGGAGCACCTAA 59.331 57.895 0.00 0.00 36.97 2.69
822 1014 2.280552 GGTCACACGGGAGCACCTA 61.281 63.158 0.00 0.00 36.97 3.08
823 1015 3.626924 GGTCACACGGGAGCACCT 61.627 66.667 0.00 0.00 36.97 4.00
824 1016 3.591254 GAGGTCACACGGGAGCACC 62.591 68.421 0.00 0.00 37.74 5.01
825 1017 2.048127 GAGGTCACACGGGAGCAC 60.048 66.667 0.00 0.00 37.74 4.40
826 1018 2.523168 TGAGGTCACACGGGAGCA 60.523 61.111 0.00 0.00 37.74 4.26
827 1019 2.262915 CTGAGGTCACACGGGAGC 59.737 66.667 0.00 0.00 35.57 4.70
828 1020 2.262915 GCTGAGGTCACACGGGAG 59.737 66.667 0.00 0.00 0.00 4.30
829 1021 3.311110 GGCTGAGGTCACACGGGA 61.311 66.667 0.00 0.00 0.00 5.14
830 1022 4.742201 CGGCTGAGGTCACACGGG 62.742 72.222 0.00 0.00 0.00 5.28
831 1023 3.515316 AACGGCTGAGGTCACACGG 62.515 63.158 0.00 0.00 0.00 4.94
832 1024 2.029073 AACGGCTGAGGTCACACG 59.971 61.111 0.00 0.00 0.00 4.49
833 1025 1.961277 CCAACGGCTGAGGTCACAC 60.961 63.158 0.00 0.00 0.00 3.82
834 1026 1.480212 ATCCAACGGCTGAGGTCACA 61.480 55.000 0.00 0.00 0.00 3.58
835 1027 0.741221 GATCCAACGGCTGAGGTCAC 60.741 60.000 0.00 0.00 0.00 3.67
836 1028 0.904865 AGATCCAACGGCTGAGGTCA 60.905 55.000 0.00 0.00 0.00 4.02
837 1029 0.179097 GAGATCCAACGGCTGAGGTC 60.179 60.000 0.00 1.94 0.00 3.85
838 1030 0.904865 TGAGATCCAACGGCTGAGGT 60.905 55.000 0.00 0.00 0.00 3.85
839 1031 0.250234 TTGAGATCCAACGGCTGAGG 59.750 55.000 0.00 0.15 0.00 3.86
840 1032 2.099141 TTTGAGATCCAACGGCTGAG 57.901 50.000 0.00 0.00 33.85 3.35
841 1033 2.632377 GATTTGAGATCCAACGGCTGA 58.368 47.619 0.00 0.00 33.85 4.26
842 1034 1.672881 GGATTTGAGATCCAACGGCTG 59.327 52.381 0.00 0.00 38.09 4.85
843 1035 1.281867 TGGATTTGAGATCCAACGGCT 59.718 47.619 1.68 0.00 44.54 5.52
844 1036 1.750193 TGGATTTGAGATCCAACGGC 58.250 50.000 1.68 0.00 44.54 5.68
849 1041 3.614092 GAGCTGTTGGATTTGAGATCCA 58.386 45.455 0.00 0.00 45.71 3.41
850 1042 2.948315 GGAGCTGTTGGATTTGAGATCC 59.052 50.000 0.00 0.00 34.09 3.36
851 1043 3.626670 CAGGAGCTGTTGGATTTGAGATC 59.373 47.826 0.00 0.00 0.00 2.75
852 1044 3.009916 ACAGGAGCTGTTGGATTTGAGAT 59.990 43.478 0.00 0.00 42.59 2.75
853 1045 2.373169 ACAGGAGCTGTTGGATTTGAGA 59.627 45.455 0.00 0.00 42.59 3.27
854 1046 2.486982 CACAGGAGCTGTTGGATTTGAG 59.513 50.000 0.00 0.00 42.59 3.02
855 1047 2.106338 TCACAGGAGCTGTTGGATTTGA 59.894 45.455 0.00 0.00 42.59 2.69
856 1048 2.486982 CTCACAGGAGCTGTTGGATTTG 59.513 50.000 0.00 0.00 42.59 2.32
857 1049 2.373169 TCTCACAGGAGCTGTTGGATTT 59.627 45.455 0.00 0.00 42.59 2.17
858 1050 1.980765 TCTCACAGGAGCTGTTGGATT 59.019 47.619 0.00 0.00 42.59 3.01
859 1051 1.649321 TCTCACAGGAGCTGTTGGAT 58.351 50.000 0.00 0.00 42.59 3.41
860 1052 1.277273 CATCTCACAGGAGCTGTTGGA 59.723 52.381 0.00 0.00 42.59 3.53
861 1053 1.277273 TCATCTCACAGGAGCTGTTGG 59.723 52.381 0.00 0.00 42.59 3.77
862 1054 2.344950 GTCATCTCACAGGAGCTGTTG 58.655 52.381 0.00 0.00 42.59 3.33
863 1055 1.067283 CGTCATCTCACAGGAGCTGTT 60.067 52.381 0.00 0.00 42.59 3.16
864 1056 0.529833 CGTCATCTCACAGGAGCTGT 59.470 55.000 0.00 0.00 46.51 4.40
865 1057 0.813821 TCGTCATCTCACAGGAGCTG 59.186 55.000 0.00 0.00 41.13 4.24
866 1058 1.203523 GTTCGTCATCTCACAGGAGCT 59.796 52.381 0.00 0.00 41.13 4.09
867 1059 1.067565 TGTTCGTCATCTCACAGGAGC 60.068 52.381 0.00 0.00 41.13 4.70
868 1060 3.516981 ATGTTCGTCATCTCACAGGAG 57.483 47.619 0.00 0.00 42.80 3.69
869 1061 3.961480 AATGTTCGTCATCTCACAGGA 57.039 42.857 0.00 0.00 35.48 3.86
870 1062 5.362556 AAAAATGTTCGTCATCTCACAGG 57.637 39.130 0.00 0.00 35.48 4.00
871 1063 6.887368 TGTAAAAATGTTCGTCATCTCACAG 58.113 36.000 0.00 0.00 35.48 3.66
872 1064 6.852858 TGTAAAAATGTTCGTCATCTCACA 57.147 33.333 0.00 0.00 35.48 3.58
873 1065 8.555166 TTTTGTAAAAATGTTCGTCATCTCAC 57.445 30.769 0.00 0.00 35.48 3.51
898 1090 7.576861 TTTTTCAGATTCTACGAGGGTTTTT 57.423 32.000 0.00 0.00 0.00 1.94
899 1091 7.447238 TCATTTTTCAGATTCTACGAGGGTTTT 59.553 33.333 0.00 0.00 0.00 2.43
900 1092 6.940298 TCATTTTTCAGATTCTACGAGGGTTT 59.060 34.615 0.00 0.00 0.00 3.27
901 1093 6.472887 TCATTTTTCAGATTCTACGAGGGTT 58.527 36.000 0.00 0.00 0.00 4.11
902 1094 6.049955 TCATTTTTCAGATTCTACGAGGGT 57.950 37.500 0.00 0.00 0.00 4.34
903 1095 6.371548 TGTTCATTTTTCAGATTCTACGAGGG 59.628 38.462 0.00 0.00 0.00 4.30
904 1096 7.364522 TGTTCATTTTTCAGATTCTACGAGG 57.635 36.000 0.00 0.00 0.00 4.63
941 1133 3.506810 GGCGTATGAGAAGCTGCTATAG 58.493 50.000 0.90 0.00 32.41 1.31
942 1134 2.095212 CGGCGTATGAGAAGCTGCTATA 60.095 50.000 0.90 0.00 31.90 1.31
943 1135 1.336332 CGGCGTATGAGAAGCTGCTAT 60.336 52.381 0.90 0.00 31.90 2.97
944 1136 0.030773 CGGCGTATGAGAAGCTGCTA 59.969 55.000 0.90 0.00 31.90 3.49
945 1137 1.227089 CGGCGTATGAGAAGCTGCT 60.227 57.895 0.00 0.00 31.90 4.24
946 1138 1.084370 AACGGCGTATGAGAAGCTGC 61.084 55.000 15.20 0.00 42.19 5.25
947 1139 0.647410 CAACGGCGTATGAGAAGCTG 59.353 55.000 15.20 0.00 43.86 4.24
948 1140 0.460284 CCAACGGCGTATGAGAAGCT 60.460 55.000 15.20 0.00 32.41 3.74
949 1141 0.459585 TCCAACGGCGTATGAGAAGC 60.460 55.000 15.20 0.00 0.00 3.86
950 1142 2.128035 GATCCAACGGCGTATGAGAAG 58.872 52.381 15.20 1.82 0.00 2.85
951 1143 1.754803 AGATCCAACGGCGTATGAGAA 59.245 47.619 15.20 4.04 0.00 2.87
952 1144 1.067060 CAGATCCAACGGCGTATGAGA 59.933 52.381 15.20 8.38 0.00 3.27
953 1145 1.067060 TCAGATCCAACGGCGTATGAG 59.933 52.381 15.20 3.66 0.00 2.90
954 1146 1.067060 CTCAGATCCAACGGCGTATGA 59.933 52.381 15.20 13.74 0.00 2.15
955 1147 1.067060 TCTCAGATCCAACGGCGTATG 59.933 52.381 15.20 13.76 0.00 2.39
956 1148 1.399714 TCTCAGATCCAACGGCGTAT 58.600 50.000 15.20 2.36 0.00 3.06
957 1149 1.337071 GATCTCAGATCCAACGGCGTA 59.663 52.381 15.20 0.00 0.00 4.42
958 1150 0.103208 GATCTCAGATCCAACGGCGT 59.897 55.000 6.77 6.77 0.00 5.68
959 1151 0.598680 GGATCTCAGATCCAACGGCG 60.599 60.000 26.71 4.80 38.09 6.46
960 1152 0.598680 CGGATCTCAGATCCAACGGC 60.599 60.000 29.75 5.50 38.08 5.68
961 1153 1.032794 TCGGATCTCAGATCCAACGG 58.967 55.000 29.75 15.64 38.08 4.44
962 1154 2.608998 CCATCGGATCTCAGATCCAACG 60.609 54.545 29.75 17.69 38.08 4.10
963 1155 2.869636 GCCATCGGATCTCAGATCCAAC 60.870 54.545 29.75 12.33 38.08 3.77
964 1156 1.345741 GCCATCGGATCTCAGATCCAA 59.654 52.381 29.75 15.74 38.08 3.53
965 1157 0.972134 GCCATCGGATCTCAGATCCA 59.028 55.000 29.75 18.52 38.08 3.41
966 1158 1.204467 GAGCCATCGGATCTCAGATCC 59.796 57.143 22.58 22.58 34.95 3.36
967 1159 1.891811 TGAGCCATCGGATCTCAGATC 59.108 52.381 6.05 6.05 39.11 2.75
968 1160 2.006805 TGAGCCATCGGATCTCAGAT 57.993 50.000 5.53 0.00 39.11 2.90
969 1161 1.780503 TTGAGCCATCGGATCTCAGA 58.219 50.000 8.76 0.00 39.11 3.27
970 1162 2.609427 TTTGAGCCATCGGATCTCAG 57.391 50.000 8.76 0.00 39.11 3.35
971 1163 2.910199 CTTTTGAGCCATCGGATCTCA 58.090 47.619 5.53 5.53 39.11 3.27
972 1164 1.601430 GCTTTTGAGCCATCGGATCTC 59.399 52.381 0.00 0.91 39.11 2.75
973 1165 1.673168 GCTTTTGAGCCATCGGATCT 58.327 50.000 0.00 0.00 39.11 2.75
983 1175 1.334869 CCATGATACGGGCTTTTGAGC 59.665 52.381 0.00 0.00 0.00 4.26
984 1176 1.949525 CCCATGATACGGGCTTTTGAG 59.050 52.381 0.00 0.00 36.72 3.02
985 1177 1.562008 TCCCATGATACGGGCTTTTGA 59.438 47.619 0.00 0.00 44.11 2.69
986 1178 1.949525 CTCCCATGATACGGGCTTTTG 59.050 52.381 0.00 0.00 44.11 2.44
987 1179 1.750682 GCTCCCATGATACGGGCTTTT 60.751 52.381 0.00 0.00 44.11 2.27
988 1180 0.179018 GCTCCCATGATACGGGCTTT 60.179 55.000 0.00 0.00 44.11 3.51
989 1181 1.344953 TGCTCCCATGATACGGGCTT 61.345 55.000 0.00 0.00 44.11 4.35
990 1182 1.766059 TGCTCCCATGATACGGGCT 60.766 57.895 0.00 0.00 44.11 5.19
991 1183 1.598130 GTGCTCCCATGATACGGGC 60.598 63.158 0.00 0.00 44.11 6.13
992 1184 1.071471 GGTGCTCCCATGATACGGG 59.929 63.158 0.00 0.00 46.03 5.28
993 1185 1.338107 TAGGTGCTCCCATGATACGG 58.662 55.000 0.00 0.00 34.66 4.02
994 1186 2.964740 CATAGGTGCTCCCATGATACG 58.035 52.381 7.37 0.00 34.66 3.06
1007 1199 1.686587 TGTGATACGGGAGCATAGGTG 59.313 52.381 0.00 0.00 0.00 4.00
1008 1200 1.964223 CTGTGATACGGGAGCATAGGT 59.036 52.381 0.00 0.00 0.00 3.08
1009 1201 2.732412 CTGTGATACGGGAGCATAGG 57.268 55.000 0.00 0.00 0.00 2.57
1325 1518 2.440247 GGGGATGGGGAAAGCACG 60.440 66.667 0.00 0.00 0.00 5.34
1326 1519 2.042944 GGGGGATGGGGAAAGCAC 60.043 66.667 0.00 0.00 0.00 4.40
1327 1520 3.738481 CGGGGGATGGGGAAAGCA 61.738 66.667 0.00 0.00 0.00 3.91
1405 1599 6.314784 GTGAAAATCTAAATCGTGGGAACAG 58.685 40.000 0.00 0.00 44.46 3.16
1417 1611 2.224549 CCGTGCCACGTGAAAATCTAAA 59.775 45.455 19.30 0.00 40.58 1.85
1502 1696 1.657751 GGCAGATGAAGGAAACCGGC 61.658 60.000 0.00 0.00 0.00 6.13
1503 1697 0.322456 TGGCAGATGAAGGAAACCGG 60.322 55.000 0.00 0.00 0.00 5.28
1515 1709 4.853924 AAACGAAGATGTTTTGGCAGAT 57.146 36.364 0.00 0.00 38.89 2.90
1578 1775 4.090642 GTCTACAGTTGAAGCAGAATCACG 59.909 45.833 0.00 0.00 0.00 4.35
1594 1792 0.385751 ATCACCATCGGCGTCTACAG 59.614 55.000 6.85 0.00 0.00 2.74
1620 1818 3.209429 GAGAATCGCATGCGTGTTG 57.791 52.632 36.50 11.63 40.74 3.33
1720 1918 2.622942 GCCTTCTTCACAATGTTCCACA 59.377 45.455 0.00 0.00 0.00 4.17
1767 1968 4.034510 CCAAGAGTTGACAAGTTCACTGAC 59.965 45.833 0.00 0.00 32.26 3.51
1963 2164 8.820831 CCATCAACTATATCTATGGGTTTCTCT 58.179 37.037 0.00 0.00 34.66 3.10
1975 2176 7.295672 TCCAAAGGAATCCCATCAACTATATCT 59.704 37.037 0.00 0.00 33.88 1.98
2048 2250 3.314693 ACCACCAAGAGAGTAAACTGGA 58.685 45.455 0.00 0.00 0.00 3.86
2058 2260 2.024176 TGGCTAGAACCACCAAGAGA 57.976 50.000 0.00 0.00 33.75 3.10
2101 2303 0.036732 AGGCACCGAATCAGCAGAAA 59.963 50.000 0.00 0.00 0.00 2.52
2146 2348 9.733556 TGTAAACATCTGGATTAATACTGTTGT 57.266 29.630 12.96 12.96 0.00 3.32
2243 2445 5.009210 CCCCATTGTGTTAATAACCATACCG 59.991 44.000 0.18 0.00 0.00 4.02
2400 2603 5.007430 CAGCACTACATTAGCCTTGAAGATG 59.993 44.000 0.00 0.00 0.00 2.90
2648 2856 7.118535 TCTGCAGCGTTAAACAAATGTCTTATA 59.881 33.333 9.47 0.00 0.00 0.98
2667 2875 7.391554 TGGGTTATGATCTAATTAATCTGCAGC 59.608 37.037 9.47 0.00 0.00 5.25
2669 2877 8.217111 TGTGGGTTATGATCTAATTAATCTGCA 58.783 33.333 0.00 0.00 0.00 4.41
3189 3397 6.420913 ACCACTGCCGATATTTCTACTATT 57.579 37.500 0.00 0.00 0.00 1.73
3245 3453 8.913487 ACATACTGATGCTGATGATCATTTAA 57.087 30.769 10.14 0.00 36.43 1.52
3250 3458 5.011329 TGCTACATACTGATGCTGATGATCA 59.989 40.000 0.00 0.00 36.43 2.92
3408 3617 2.932614 CACCTCTTCGAGCTGTATTTGG 59.067 50.000 0.00 0.00 0.00 3.28
3491 3727 3.547054 ACGGCCGGTTCATCTTTTATA 57.453 42.857 31.76 0.00 0.00 0.98
3506 3742 5.048573 TGAAAACTAATCCTAACAAACGGCC 60.049 40.000 0.00 0.00 0.00 6.13
3559 3795 2.912771 ACATGACAACAAGGACAACGA 58.087 42.857 0.00 0.00 0.00 3.85
3735 3971 2.409064 TCCTTAGGACAACACCCTCA 57.591 50.000 0.00 0.00 35.30 3.86
3816 4052 3.387699 ACCAAAATCAAAACACTGAGGGG 59.612 43.478 0.00 0.00 0.00 4.79
3817 4053 4.141959 ACACCAAAATCAAAACACTGAGGG 60.142 41.667 0.00 0.00 0.00 4.30
3818 4054 5.009854 ACACCAAAATCAAAACACTGAGG 57.990 39.130 0.00 0.00 0.00 3.86
3819 4055 5.229887 CGAACACCAAAATCAAAACACTGAG 59.770 40.000 0.00 0.00 0.00 3.35
3820 4056 5.098893 CGAACACCAAAATCAAAACACTGA 58.901 37.500 0.00 0.00 0.00 3.41
3828 4069 5.182380 GGATCCTTACGAACACCAAAATCAA 59.818 40.000 3.84 0.00 0.00 2.57
3852 4093 9.167311 AGTGAAATGTATCTTTTAAGCACTAGG 57.833 33.333 0.00 0.00 31.81 3.02
3967 4211 4.814224 ATTGGGCATAAAGGGACATAGT 57.186 40.909 0.00 0.00 0.00 2.12
3973 4217 3.464720 TCACAATTGGGCATAAAGGGA 57.535 42.857 10.83 0.00 0.00 4.20
3990 4239 3.952535 ACGACTGCAAGAACAAAATCAC 58.047 40.909 0.00 0.00 37.43 3.06
4127 4376 8.352201 CCAATTCTGAAAACAGAAACATCACTA 58.648 33.333 14.92 0.00 43.44 2.74
4133 4382 7.416213 CCACTACCAATTCTGAAAACAGAAACA 60.416 37.037 14.92 0.00 43.44 2.83
4321 4570 6.597562 ACACTTAACCACTATCTTGGAAACA 58.402 36.000 0.00 0.00 39.24 2.83
4356 4606 1.971695 CCCGACCTTGCCACCTTTC 60.972 63.158 0.00 0.00 0.00 2.62
4379 4630 2.438434 ACGTAGCTTGGCCCATGC 60.438 61.111 13.46 13.46 35.22 4.06
4446 4697 4.728772 TGATTTTCCGCTCATATGGGATT 58.271 39.130 6.82 0.00 0.00 3.01
4447 4698 4.371624 TGATTTTCCGCTCATATGGGAT 57.628 40.909 6.82 0.00 0.00 3.85
4457 4708 0.734889 CTTCGGCATGATTTTCCGCT 59.265 50.000 0.00 0.00 42.65 5.52
4667 4918 9.995003 CTCTGTAAAGAAATATGAGAGCCTTAT 57.005 33.333 0.00 0.00 0.00 1.73
4671 4922 5.994668 CCCTCTGTAAAGAAATATGAGAGCC 59.005 44.000 0.00 0.00 0.00 4.70
4672 4923 5.994668 CCCCTCTGTAAAGAAATATGAGAGC 59.005 44.000 0.00 0.00 0.00 4.09
4674 4925 5.970640 ACCCCCTCTGTAAAGAAATATGAGA 59.029 40.000 0.00 0.00 0.00 3.27
4677 4928 6.253946 AGACCCCCTCTGTAAAGAAATATG 57.746 41.667 0.00 0.00 0.00 1.78
4679 4930 7.580109 CGTTTAGACCCCCTCTGTAAAGAAATA 60.580 40.741 0.00 0.00 0.00 1.40
4680 4931 6.482524 GTTTAGACCCCCTCTGTAAAGAAAT 58.517 40.000 0.00 0.00 0.00 2.17
4682 4933 4.020839 CGTTTAGACCCCCTCTGTAAAGAA 60.021 45.833 0.00 0.00 0.00 2.52
4683 4934 3.512724 CGTTTAGACCCCCTCTGTAAAGA 59.487 47.826 0.00 0.00 0.00 2.52
4684 4935 3.858247 CGTTTAGACCCCCTCTGTAAAG 58.142 50.000 0.00 0.00 0.00 1.85
4685 4936 2.027837 GCGTTTAGACCCCCTCTGTAAA 60.028 50.000 0.00 0.00 0.00 2.01
4686 4937 1.551883 GCGTTTAGACCCCCTCTGTAA 59.448 52.381 0.00 0.00 0.00 2.41
4687 4938 1.188863 GCGTTTAGACCCCCTCTGTA 58.811 55.000 0.00 0.00 0.00 2.74
4688 4939 1.551019 GGCGTTTAGACCCCCTCTGT 61.551 60.000 0.00 0.00 0.00 3.41
4689 4940 1.221021 GGCGTTTAGACCCCCTCTG 59.779 63.158 0.00 0.00 0.00 3.35
4690 4941 1.993948 GGGCGTTTAGACCCCCTCT 60.994 63.158 0.00 0.00 44.51 3.69
4691 4942 2.588439 GGGCGTTTAGACCCCCTC 59.412 66.667 0.00 0.00 44.51 4.30
4697 4948 9.101655 TGTAAAGAAATATAAGGGCGTTTAGAC 57.898 33.333 0.00 0.00 0.00 2.59
4724 4975 6.940867 GGTCACCCAATTAATATTACTCCCTC 59.059 42.308 0.00 0.00 0.00 4.30
4728 4979 8.630037 CCAAAGGTCACCCAATTAATATTACTC 58.370 37.037 0.00 0.00 0.00 2.59
4768 5357 0.986019 AGGAATGGACCGGGTATGCA 60.986 55.000 6.32 0.00 34.73 3.96
4931 5520 2.221055 GGTTGAGTAGCGTTTGACACTG 59.779 50.000 0.00 0.00 0.00 3.66
5139 5729 2.428544 AACAACTGTGCACCTACCAA 57.571 45.000 15.69 0.00 0.00 3.67
5245 5835 9.982291 GAAGACATAAAACGATTTGTTATGCTA 57.018 29.630 0.28 0.00 40.84 3.49
5246 5836 8.511321 TGAAGACATAAAACGATTTGTTATGCT 58.489 29.630 0.28 0.00 40.84 3.79
5247 5837 8.667987 TGAAGACATAAAACGATTTGTTATGC 57.332 30.769 0.28 0.00 40.84 3.14
5251 5841 9.612620 GAGAATGAAGACATAAAACGATTTGTT 57.387 29.630 0.28 0.00 37.90 2.83
5253 5843 9.778993 ATGAGAATGAAGACATAAAACGATTTG 57.221 29.630 0.28 0.00 35.50 2.32
5259 5849 8.677300 TGCCTAATGAGAATGAAGACATAAAAC 58.323 33.333 0.00 0.00 35.50 2.43
5260 5850 8.806429 TGCCTAATGAGAATGAAGACATAAAA 57.194 30.769 0.00 0.00 35.50 1.52
5263 5853 8.677300 GTTTTGCCTAATGAGAATGAAGACATA 58.323 33.333 0.00 0.00 35.50 2.29
5265 5855 6.716628 AGTTTTGCCTAATGAGAATGAAGACA 59.283 34.615 0.00 0.00 0.00 3.41
5276 5866 5.376625 ACTCTTGACAGTTTTGCCTAATGA 58.623 37.500 0.00 0.00 0.00 2.57
5279 5869 5.417580 ACAAACTCTTGACAGTTTTGCCTAA 59.582 36.000 0.00 0.00 42.81 2.69
5323 5913 5.675575 GCTGCACAGAATTTCAATCTAGGTG 60.676 44.000 0.81 0.00 0.00 4.00
5466 6068 1.272490 TGTACGTCAGCTTCTTCCTGG 59.728 52.381 0.00 0.00 0.00 4.45
5646 6248 4.634012 TTACCAGCAGTGTTCCAGTTAT 57.366 40.909 0.00 0.00 0.00 1.89
5670 6272 2.892852 TCCAACCCATTCAGCTTTTCAG 59.107 45.455 0.00 0.00 0.00 3.02
5671 6273 2.627699 GTCCAACCCATTCAGCTTTTCA 59.372 45.455 0.00 0.00 0.00 2.69
5672 6274 2.351738 CGTCCAACCCATTCAGCTTTTC 60.352 50.000 0.00 0.00 0.00 2.29
5673 6275 1.613437 CGTCCAACCCATTCAGCTTTT 59.387 47.619 0.00 0.00 0.00 2.27
5689 6291 3.583806 CAAGATGCCTGAGATATCGTCC 58.416 50.000 0.00 0.00 0.00 4.79
5791 6394 2.031157 GCGTACAAAAGAGCACACCAAT 60.031 45.455 0.00 0.00 0.00 3.16
5825 6428 7.446013 CCAAAGGACTCGTCTTCTAGTATATCT 59.554 40.741 0.00 0.00 0.00 1.98
5826 6429 7.586747 CCAAAGGACTCGTCTTCTAGTATATC 58.413 42.308 0.00 0.00 0.00 1.63
5827 6430 6.016108 GCCAAAGGACTCGTCTTCTAGTATAT 60.016 42.308 0.00 0.00 0.00 0.86
5830 6433 3.442977 GCCAAAGGACTCGTCTTCTAGTA 59.557 47.826 0.00 0.00 0.00 1.82
5831 6434 2.231721 GCCAAAGGACTCGTCTTCTAGT 59.768 50.000 0.00 0.00 0.00 2.57
5832 6435 2.417515 GGCCAAAGGACTCGTCTTCTAG 60.418 54.545 0.00 0.00 0.00 2.43
5891 6496 5.228843 GCACGGACGTTCTTCTAGTAATAAC 59.771 44.000 0.00 0.00 0.00 1.89
5892 6497 5.335127 GCACGGACGTTCTTCTAGTAATAA 58.665 41.667 0.00 0.00 0.00 1.40
5893 6498 4.494690 CGCACGGACGTTCTTCTAGTAATA 60.495 45.833 0.00 0.00 0.00 0.98
5894 6499 3.730061 CGCACGGACGTTCTTCTAGTAAT 60.730 47.826 0.00 0.00 0.00 1.89
5895 6500 2.413239 CGCACGGACGTTCTTCTAGTAA 60.413 50.000 0.00 0.00 0.00 2.24
5896 6501 1.129251 CGCACGGACGTTCTTCTAGTA 59.871 52.381 0.00 0.00 0.00 1.82
5964 6569 7.272978 AGGTCACCAATGTCACTTATATGTAC 58.727 38.462 0.00 0.00 0.00 2.90
6004 6853 3.206412 AGGGAGAGAGTGTGTATGAGGAT 59.794 47.826 0.00 0.00 0.00 3.24
6005 6854 2.583101 AGGGAGAGAGTGTGTATGAGGA 59.417 50.000 0.00 0.00 0.00 3.71
6037 6889 0.047176 AGAGAGAGGGAGGGAGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
6103 7003 3.331150 CACTAGCGGGTGTGTGAAATAA 58.669 45.455 8.71 0.00 32.72 1.40
6116 7018 5.922739 TTCATATTGTTATGCACTAGCGG 57.077 39.130 0.00 0.00 46.23 5.52
6203 7113 1.276989 TCCTCCGCGTATTTTTGGAGT 59.723 47.619 4.92 0.00 45.27 3.85
6210 7120 1.520666 CCACCTCCTCCGCGTATTT 59.479 57.895 4.92 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.