AutoCloner

Multiple sequence alignment - TraesCS6D01G170500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G170500	chr6D	100.000	3503	0	0	1	3503	157169206	157165704	0.000000e+00	6469
1	TraesCS6D01G170500	chr6A	94.517	2079	53	19	702	2740	215527548	215529605	0.000000e+00	3151
2	TraesCS6D01G170500	chr6A	91.940	397	5	7	3036	3429	215529886	215530258	6.660000e-147	531
3	TraesCS6D01G170500	chr6A	93.355	301	5	4	2736	3036	215529570	215529855	6.950000e-117	431
4	TraesCS6D01G170500	chr6A	93.333	75	5	0	3429	3503	215530284	215530358	1.030000e-20	111
5	TraesCS6D01G170500	chr6B	93.167	2005	59	33	712	2683	280050326	280048367	0.000000e+00	2872
6	TraesCS6D01G170500	chr6B	91.521	401	9	4	3036	3429	280048041	280047659	2.390000e-146	529
7	TraesCS6D01G170500	chr6B	91.946	298	11	7	2739	3036	280048356	280048072	4.210000e-109	405
8	TraesCS6D01G170500	chr4A	86.876	701	58	17	18	690	133845563	133846257	0.000000e+00	754
9	TraesCS6D01G170500	chr4A	88.276	580	54	10	1	575	38677820	38677250	0.000000e+00	682
10	TraesCS6D01G170500	chr3B	86.630	718	52	15	4	690	594566485	594567189	0.000000e+00	754
11	TraesCS6D01G170500	chr3D	86.192	717	63	14	1	686	537593803	537593092	0.000000e+00	743
12	TraesCS6D01G170500	chr3D	90.000	120	9	2	574	690	438606171	438606290	6.060000e-33	152
13	TraesCS6D01G170500	chr1D	90.087	575	48	6	1	573	376279626	376280193	0.000000e+00	737
14	TraesCS6D01G170500	chr2D	89.948	577	43	11	1	574	398645943	398645379	0.000000e+00	730
15	TraesCS6D01G170500	chr7D	85.356	717	68	18	1	688	47386854	47386146	0.000000e+00	708
16	TraesCS6D01G170500	chr7D	76.783	715	147	15	1325	2030	459873478	459872774	1.970000e-102	383
17	TraesCS6D01G170500	chr2A	85.369	704	72	14	10	688	203668103	203667406	0.000000e+00	701
18	TraesCS6D01G170500	chr2A	88.889	576	49	11	1	574	535834563	535834001	0.000000e+00	695
19	TraesCS6D01G170500	chr7B	76.397	716	148	18	1325	2030	482175897	482175193	1.990000e-97	366
20	TraesCS6D01G170500	chr7A	76.331	714	150	16	1326	2030	539652067	539652770	7.150000e-97	364
21	TraesCS6D01G170500	chr5B	81.609	348	30	14	366	680	643414406	643414752	1.250000e-64	257

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G170500	chr6D	157165704	157169206	3502	True	6469.000000	6469	100.000000	1	3503	1	chr6D.!!$R1	3502
1	TraesCS6D01G170500	chr6A	215527548	215530358	2810	False	1056.000000	3151	93.286250	702	3503	4	chr6A.!!$F1	2801
2	TraesCS6D01G170500	chr6B	280047659	280050326	2667	True	1268.666667	2872	92.211333	712	3429	3	chr6B.!!$R1	2717
3	TraesCS6D01G170500	chr4A	133845563	133846257	694	False	754.000000	754	86.876000	18	690	1	chr4A.!!$F1	672
4	TraesCS6D01G170500	chr4A	38677250	38677820	570	True	682.000000	682	88.276000	1	575	1	chr4A.!!$R1	574
5	TraesCS6D01G170500	chr3B	594566485	594567189	704	False	754.000000	754	86.630000	4	690	1	chr3B.!!$F1	686
6	TraesCS6D01G170500	chr3D	537593092	537593803	711	True	743.000000	743	86.192000	1	686	1	chr3D.!!$R1	685
7	TraesCS6D01G170500	chr1D	376279626	376280193	567	False	737.000000	737	90.087000	1	573	1	chr1D.!!$F1	572
8	TraesCS6D01G170500	chr2D	398645379	398645943	564	True	730.000000	730	89.948000	1	574	1	chr2D.!!$R1	573
9	TraesCS6D01G170500	chr7D	47386146	47386854	708	True	708.000000	708	85.356000	1	688	1	chr7D.!!$R1	687
10	TraesCS6D01G170500	chr7D	459872774	459873478	704	True	383.000000	383	76.783000	1325	2030	1	chr7D.!!$R2	705
11	TraesCS6D01G170500	chr2A	203667406	203668103	697	True	701.000000	701	85.369000	10	688	1	chr2A.!!$R1	678
12	TraesCS6D01G170500	chr2A	535834001	535834563	562	True	695.000000	695	88.889000	1	574	1	chr2A.!!$R2	573
13	TraesCS6D01G170500	chr7B	482175193	482175897	704	True	366.000000	366	76.397000	1325	2030	1	chr7B.!!$R1	705
14	TraesCS6D01G170500	chr7A	539652067	539652770	703	False	364.000000	364	76.331000	1326	2030	1	chr7A.!!$F1	704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
692	734	0.104855	GATCTACCGGCACATCAGCA	59.895	55.0	0.0	0.0	35.83	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2539	2636	0.3199	GACGACATGCATATCCGGCT	60.32	55.0	15.65	0.0	0.0	5.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	76	7.432252	CACAAGTTGAGGTTTTAGTTTCACATC	59.568	37.037	10.54	0.00	0.00	3.06
234	237	9.868277	AATTAGTTTCACAAGTTGTCATTTGAA	57.132	25.926	5.27	3.67	0.00	2.69
416	422	7.798982	CGAAATTGGTCTAGTTTCAAAGTTCTC	59.201	37.037	5.29	0.00	35.42	2.87
646	687	8.113462	ACATTTAGGTGGGTCATACAGTTTTAT	58.887	33.333	0.00	0.00	0.00	1.40
653	694	8.621286	GGTGGGTCATACAGTTTTATAAATCTG	58.379	37.037	24.93	24.93	40.08	2.90
683	725	2.456287	GATGGCCCAGATCTACCGGC	62.456	65.000	15.96	15.96	40.85	6.13
690	732	1.269988	CCAGATCTACCGGCACATCAG	60.270	57.143	0.00	0.00	0.00	2.90
691	733	0.390860	AGATCTACCGGCACATCAGC	59.609	55.000	0.00	0.00	0.00	4.26
692	734	0.104855	GATCTACCGGCACATCAGCA	59.895	55.000	0.00	0.00	35.83	4.41
693	735	0.541392	ATCTACCGGCACATCAGCAA	59.459	50.000	0.00	0.00	35.83	3.91
694	736	0.541392	TCTACCGGCACATCAGCAAT	59.459	50.000	0.00	0.00	35.83	3.56
695	737	1.760029	TCTACCGGCACATCAGCAATA	59.240	47.619	0.00	0.00	35.83	1.90
696	738	2.368548	TCTACCGGCACATCAGCAATAT	59.631	45.455	0.00	0.00	35.83	1.28
697	739	1.311859	ACCGGCACATCAGCAATATG	58.688	50.000	0.00	0.00	35.83	1.78
698	740	1.134128	ACCGGCACATCAGCAATATGA	60.134	47.619	0.00	0.00	35.83	2.15
699	741	1.265095	CCGGCACATCAGCAATATGAC	59.735	52.381	0.00	0.00	35.83	3.06
700	742	2.216046	CGGCACATCAGCAATATGACT	58.784	47.619	0.58	0.00	35.83	3.41
701	743	2.615447	CGGCACATCAGCAATATGACTT	59.385	45.455	0.58	0.00	35.83	3.01
702	744	3.065786	CGGCACATCAGCAATATGACTTT	59.934	43.478	0.58	0.00	35.83	2.66
703	745	4.357142	GGCACATCAGCAATATGACTTTG	58.643	43.478	0.58	0.00	35.83	2.77
851	893	3.884693	TGCTAATAATACCACCTCGACGA	59.115	43.478	0.00	0.00	0.00	4.20
1259	1335	2.733218	GTAGTGAGCGTGCGTGCA	60.733	61.111	2.66	0.00	37.31	4.57
2254	2346	5.957910	TTCAAATTCAAATTCAAACGCGT	57.042	30.435	5.58	5.58	0.00	6.01
2332	2424	0.537371	GTGGAAGAACTGGGTGTGGG	60.537	60.000	0.00	0.00	0.00	4.61
2353	2445	2.032860	ATCGGAAGGCGACCTGATGG	62.033	60.000	0.00	0.00	32.13	3.51
2432	2524	0.322816	GACCTCATCAAGCCCAAGCA	60.323	55.000	0.00	0.00	43.56	3.91
2486	2578	2.203280	CCCGTTGGACTGCAACCA	60.203	61.111	7.75	8.02	35.47	3.67
2539	2636	1.075525	ATACCTGCCAGGCGGAGTA	60.076	57.895	23.25	20.45	39.63	2.59
2618	2715	2.358125	CACGCGACAACCCATCCA	60.358	61.111	15.93	0.00	0.00	3.41
2688	2785	2.325393	GAATGTAGGAGGGTGGCCGG	62.325	65.000	0.00	0.00	0.00	6.13
2711	2808	2.177734	TCATCAGTCTGCTGCTCTCTT	58.822	47.619	0.00	0.00	42.29	2.85
2712	2809	2.166050	TCATCAGTCTGCTGCTCTCTTC	59.834	50.000	0.00	0.00	42.29	2.87
2713	2810	0.525311	TCAGTCTGCTGCTCTCTTCG	59.475	55.000	0.00	0.00	42.29	3.79
2714	2811	0.243365	CAGTCTGCTGCTCTCTTCGT	59.757	55.000	0.00	0.00	35.77	3.85
2715	2812	0.243365	AGTCTGCTGCTCTCTTCGTG	59.757	55.000	0.00	0.00	0.00	4.35
2716	2813	0.038709	GTCTGCTGCTCTCTTCGTGT	60.039	55.000	0.00	0.00	0.00	4.49
2717	2814	1.200252	GTCTGCTGCTCTCTTCGTGTA	59.800	52.381	0.00	0.00	0.00	2.90
2718	2815	1.470494	TCTGCTGCTCTCTTCGTGTAG	59.530	52.381	0.00	0.00	0.00	2.74
2719	2816	1.201181	CTGCTGCTCTCTTCGTGTAGT	59.799	52.381	0.00	0.00	0.00	2.73
2720	2817	1.200252	TGCTGCTCTCTTCGTGTAGTC	59.800	52.381	0.00	0.00	0.00	2.59
2721	2818	1.792273	GCTGCTCTCTTCGTGTAGTCG	60.792	57.143	0.00	0.00	0.00	4.18
2722	2819	1.732809	CTGCTCTCTTCGTGTAGTCGA	59.267	52.381	0.00	0.00	38.08	4.20
2723	2820	2.353269	CTGCTCTCTTCGTGTAGTCGAT	59.647	50.000	0.00	0.00	39.57	3.59
2724	2821	2.096013	TGCTCTCTTCGTGTAGTCGATG	59.904	50.000	0.00	0.00	39.57	3.84
2725	2822	2.096174	GCTCTCTTCGTGTAGTCGATGT	59.904	50.000	0.00	0.00	39.57	3.06
2726	2823	3.309138	GCTCTCTTCGTGTAGTCGATGTA	59.691	47.826	0.00	0.00	39.57	2.29
2727	2824	4.782822	GCTCTCTTCGTGTAGTCGATGTAC	60.783	50.000	0.00	0.00	39.57	2.90
2728	2825	3.305361	TCTCTTCGTGTAGTCGATGTACG	59.695	47.826	7.76	7.76	39.57	3.67
2729	2826	2.995939	TCTTCGTGTAGTCGATGTACGT	59.004	45.455	12.02	0.00	43.13	3.57
2730	2827	4.173256	TCTTCGTGTAGTCGATGTACGTA	58.827	43.478	12.02	0.00	43.13	3.57
2731	2828	3.907178	TCGTGTAGTCGATGTACGTAC	57.093	47.619	18.90	18.90	43.13	3.67
2732	2829	2.603110	TCGTGTAGTCGATGTACGTACC	59.397	50.000	22.43	7.53	43.13	3.34
2733	2830	2.604914	CGTGTAGTCGATGTACGTACCT	59.395	50.000	22.43	13.31	43.13	3.08
2734	2831	3.796717	CGTGTAGTCGATGTACGTACCTA	59.203	47.826	22.43	12.87	43.13	3.08
2735	2832	4.445718	CGTGTAGTCGATGTACGTACCTAT	59.554	45.833	22.43	10.59	43.13	2.57
2736	2833	5.387855	CGTGTAGTCGATGTACGTACCTATC	60.388	48.000	22.43	17.34	43.13	2.08
2737	2834	5.463392	GTGTAGTCGATGTACGTACCTATCA	59.537	44.000	22.43	12.67	43.13	2.15
2738	2835	5.463392	TGTAGTCGATGTACGTACCTATCAC	59.537	44.000	22.43	17.11	43.13	3.06
2739	2836	4.701765	AGTCGATGTACGTACCTATCACT	58.298	43.478	22.43	18.59	43.13	3.41
2781	2878	6.461640	ACGTACCTATCACTACTTGCTTTTT	58.538	36.000	0.00	0.00	0.00	1.94
2782	2879	6.589139	ACGTACCTATCACTACTTGCTTTTTC	59.411	38.462	0.00	0.00	0.00	2.29
2783	2880	6.035758	CGTACCTATCACTACTTGCTTTTTCC	59.964	42.308	0.00	0.00	0.00	3.13
2784	2881	6.128138	ACCTATCACTACTTGCTTTTTCCT	57.872	37.500	0.00	0.00	0.00	3.36
2785	2882	6.174049	ACCTATCACTACTTGCTTTTTCCTC	58.826	40.000	0.00	0.00	0.00	3.71
2786	2883	6.013293	ACCTATCACTACTTGCTTTTTCCTCT	60.013	38.462	0.00	0.00	0.00	3.69
2787	2884	6.881602	CCTATCACTACTTGCTTTTTCCTCTT	59.118	38.462	0.00	0.00	0.00	2.85
2788	2885	6.809630	ATCACTACTTGCTTTTTCCTCTTC	57.190	37.500	0.00	0.00	0.00	2.87
2789	2886	5.930135	TCACTACTTGCTTTTTCCTCTTCT	58.070	37.500	0.00	0.00	0.00	2.85
2790	2887	6.357367	TCACTACTTGCTTTTTCCTCTTCTT	58.643	36.000	0.00	0.00	0.00	2.52
2791	2888	6.483640	TCACTACTTGCTTTTTCCTCTTCTTC	59.516	38.462	0.00	0.00	0.00	2.87
2792	2889	6.484977	CACTACTTGCTTTTTCCTCTTCTTCT	59.515	38.462	0.00	0.00	0.00	2.85
2793	2890	7.012799	CACTACTTGCTTTTTCCTCTTCTTCTT	59.987	37.037	0.00	0.00	0.00	2.52
2801	2898	7.521423	GCTTTTTCCTCTTCTTCTTCTTCTTCC	60.521	40.741	0.00	0.00	0.00	3.46
2804	2901	4.775253	TCCTCTTCTTCTTCTTCTTCCTCC	59.225	45.833	0.00	0.00	0.00	4.30
2833	2948	8.582437	CGAGGAAATAGGAATTGTGTACCTATA	58.418	37.037	0.00	0.00	43.49	1.31
3104	3252	2.358898	GGCATACCATACAAGCAAGGTG	59.641	50.000	0.00	0.00	35.62	4.00
3133	3281	7.926018	GGGTGAAAAATACAGACATTTTGTTCT	59.074	33.333	0.00	0.00	37.97	3.01
3170	3318	6.433766	GGAAGACAAGAAAAGTTGATCACTG	58.566	40.000	0.00	0.00	35.12	3.66
3177	3325	7.121168	ACAAGAAAAGTTGATCACTGTCTCAAA	59.879	33.333	0.00	0.00	35.12	2.69
3313	3462	7.696453	TCTGTCGCAGTTTTCTTTTTCTTTTAG	59.304	33.333	6.72	0.00	32.61	1.85
3462	3642	1.024271	TGTGCTTTGTCACAAGGAGC	58.976	50.000	3.33	5.53	43.27	4.70
3474	3654	5.480422	TGTCACAAGGAGCTCAGACTATAAA	59.520	40.000	17.19	0.00	0.00	1.40
3484	3664	4.504858	CTCAGACTATAAAAGGGTTGCGT	58.495	43.478	0.00	0.00	0.00	5.24
3487	3667	6.646267	TCAGACTATAAAAGGGTTGCGTATT	58.354	36.000	0.00	0.00	0.00	1.89
3493	3673	7.776500	ACTATAAAAGGGTTGCGTATTATTGGT	59.224	33.333	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	4.022464	TGTGTAACGGTTTGCTTCAAAG	57.978	40.909	0.00	0.00	42.39	2.77
380	385	8.851541	AACTAGACCAATTTCGGTTACATTTA	57.148	30.769	0.00	0.00	40.22	1.40
388	394	5.826208	ACTTTGAAACTAGACCAATTTCGGT	59.174	36.000	0.00	0.00	43.91	4.69
391	397	7.798982	CGAGAACTTTGAAACTAGACCAATTTC	59.201	37.037	0.00	0.00	33.75	2.17
416	422	0.174845	TATTTGGACTCCTGGCGTCG	59.825	55.000	10.47	0.00	32.24	5.12
646	687	5.360714	GGCCATCCATTTGTTCTCAGATTTA	59.639	40.000	0.00	0.00	0.00	1.40
653	694	1.753073	CTGGGCCATCCATTTGTTCTC	59.247	52.381	6.72	0.00	46.01	2.87
691	733	5.334319	TGAATTCTGCGCAAAGTCATATTG	58.666	37.500	22.27	5.69	0.00	1.90
692	734	5.565592	TGAATTCTGCGCAAAGTCATATT	57.434	34.783	22.27	11.12	0.00	1.28
693	735	5.516996	CATGAATTCTGCGCAAAGTCATAT	58.483	37.500	29.46	17.86	38.85	1.78
694	736	4.731483	GCATGAATTCTGCGCAAAGTCATA	60.731	41.667	29.46	15.74	38.85	2.15
695	737	3.766151	CATGAATTCTGCGCAAAGTCAT	58.234	40.909	26.98	26.98	40.83	3.06
696	738	2.669113	GCATGAATTCTGCGCAAAGTCA	60.669	45.455	25.64	25.64	35.48	3.41
697	739	1.916000	GCATGAATTCTGCGCAAAGTC	59.084	47.619	13.05	17.00	0.00	3.01
698	740	1.986698	GCATGAATTCTGCGCAAAGT	58.013	45.000	13.05	8.29	0.00	2.66
705	747	1.098050	AGGGAACGCATGAATTCTGC	58.902	50.000	15.67	15.67	36.26	4.26
706	748	2.489329	ACAAGGGAACGCATGAATTCTG	59.511	45.455	7.05	3.98	0.00	3.02
813	855	4.087892	CACAGAGGGGTGAGGCGG	62.088	72.222	0.00	0.00	41.32	6.13
851	893	5.134679	AGGCCTATATACGTAGGAGGATGAT	59.865	44.000	19.31	0.00	43.27	2.45
1259	1335	2.786495	CGGGCTAGTCGACCTGCAT	61.786	63.158	24.90	6.16	39.40	3.96
1374	1450	4.436998	GTCCGTCGCCCAGTCCTG	62.437	72.222	0.00	0.00	0.00	3.86
1953	2029	1.672356	CCTTGTCCTCCGGCTTGTG	60.672	63.158	0.00	0.00	0.00	3.33
2254	2346	2.100023	CCATTCAATTCGCGCGCA	59.900	55.556	32.61	17.05	0.00	6.09
2353	2445	1.988467	GGTGAAGTAGGCGTCGTTTAC	59.012	52.381	0.00	0.00	0.00	2.01
2432	2524	0.324460	CCTCCTGACGTACTCCCCTT	60.324	60.000	0.00	0.00	0.00	3.95
2539	2636	0.319900	GACGACATGCATATCCGGCT	60.320	55.000	15.65	0.00	0.00	5.52
2618	2715	7.161404	TGTTGTCTAGTGTAGCATCAAAGATT	58.839	34.615	0.00	0.00	0.00	2.40
2688	2785	3.125316	GAGAGCAGCAGACTGATGAATC	58.875	50.000	24.39	18.93	44.20	2.52
2711	2808	2.603110	GGTACGTACATCGACTACACGA	59.397	50.000	26.02	0.00	46.04	4.35
2712	2809	2.604914	AGGTACGTACATCGACTACACG	59.395	50.000	26.02	8.57	42.86	4.49
2713	2810	5.463392	TGATAGGTACGTACATCGACTACAC	59.537	44.000	26.02	14.54	42.86	2.90
2714	2811	5.463392	GTGATAGGTACGTACATCGACTACA	59.537	44.000	26.02	14.22	42.86	2.74
2715	2812	5.694006	AGTGATAGGTACGTACATCGACTAC	59.306	44.000	26.02	14.40	42.86	2.73
2716	2813	5.693555	CAGTGATAGGTACGTACATCGACTA	59.306	44.000	26.02	17.20	42.86	2.59
2717	2814	4.510711	CAGTGATAGGTACGTACATCGACT	59.489	45.833	26.02	19.98	42.86	4.18
2718	2815	4.272018	ACAGTGATAGGTACGTACATCGAC	59.728	45.833	26.02	18.54	42.86	4.20
2719	2816	4.445453	ACAGTGATAGGTACGTACATCGA	58.555	43.478	26.02	6.68	42.86	3.59
2720	2817	4.808077	ACAGTGATAGGTACGTACATCG	57.192	45.455	26.02	11.48	46.00	3.84
2721	2818	5.203370	CGAACAGTGATAGGTACGTACATC	58.797	45.833	26.02	20.22	0.00	3.06
2722	2819	4.637534	ACGAACAGTGATAGGTACGTACAT	59.362	41.667	26.02	22.06	0.00	2.29
2723	2820	4.002982	ACGAACAGTGATAGGTACGTACA	58.997	43.478	26.02	8.12	0.00	2.90
2724	2821	4.606457	ACGAACAGTGATAGGTACGTAC	57.394	45.455	17.56	17.56	0.00	3.67
2737	2834	4.224433	CGTACATTGACTACACGAACAGT	58.776	43.478	0.00	0.00	34.66	3.55
2738	2835	4.224433	ACGTACATTGACTACACGAACAG	58.776	43.478	0.00	0.00	36.51	3.16
2739	2836	4.227512	ACGTACATTGACTACACGAACA	57.772	40.909	0.00	0.00	36.51	3.18
2781	2878	4.775253	GGAGGAAGAAGAAGAAGAAGAGGA	59.225	45.833	0.00	0.00	0.00	3.71
2782	2879	4.777366	AGGAGGAAGAAGAAGAAGAAGAGG	59.223	45.833	0.00	0.00	0.00	3.69
2783	2880	5.105351	GGAGGAGGAAGAAGAAGAAGAAGAG	60.105	48.000	0.00	0.00	0.00	2.85
2784	2881	4.775253	GGAGGAGGAAGAAGAAGAAGAAGA	59.225	45.833	0.00	0.00	0.00	2.87
2785	2882	4.381505	CGGAGGAGGAAGAAGAAGAAGAAG	60.382	50.000	0.00	0.00	0.00	2.85
2786	2883	3.511934	CGGAGGAGGAAGAAGAAGAAGAA	59.488	47.826	0.00	0.00	0.00	2.52
2787	2884	3.093057	CGGAGGAGGAAGAAGAAGAAGA	58.907	50.000	0.00	0.00	0.00	2.87
2788	2885	3.093057	TCGGAGGAGGAAGAAGAAGAAG	58.907	50.000	0.00	0.00	0.00	2.85
2789	2886	3.093057	CTCGGAGGAGGAAGAAGAAGAA	58.907	50.000	0.00	0.00	36.61	2.52
2790	2887	2.729194	CTCGGAGGAGGAAGAAGAAGA	58.271	52.381	0.00	0.00	36.61	2.87
2801	2898	4.101741	ACAATTCCTATTTCCTCGGAGGAG	59.898	45.833	24.81	14.24	46.73	3.69
2804	2901	4.770795	ACACAATTCCTATTTCCTCGGAG	58.229	43.478	0.00	0.00	0.00	4.63
2833	2948	9.546428	ACAACATGCATGCGTATATGTATATAT	57.454	29.630	26.53	3.70	32.64	0.86
2834	2949	8.940768	ACAACATGCATGCGTATATGTATATA	57.059	30.769	26.53	0.00	32.64	0.86
2971	3086	5.713792	TTGTGTTTGGTTGACAGAAGAAA	57.286	34.783	0.00	0.00	0.00	2.52
3104	3252	7.494298	ACAAAATGTCTGTATTTTTCACCCAAC	59.506	33.333	0.00	0.00	37.97	3.77
3133	3281	6.889301	TCTTGTCTTCCGTCTAAACTAGAA	57.111	37.500	0.00	0.00	36.40	2.10
3170	3318	5.649831	AGGGCATCTGAAATTAGTTTGAGAC	59.350	40.000	2.12	0.00	39.76	3.36
3177	3325	5.819991	TGAAAGAGGGCATCTGAAATTAGT	58.180	37.500	0.87	0.00	38.67	2.24
3313	3462	3.964031	AGACATCCAGACCTATCCTTGTC	59.036	47.826	0.00	0.00	34.02	3.18
3462	3642	4.504858	ACGCAACCCTTTTATAGTCTGAG	58.495	43.478	0.00	0.00	0.00	3.35
3474	3654	3.958018	TCACCAATAATACGCAACCCTT	58.042	40.909	0.00	0.00	0.00	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.