Multiple sequence alignment - TraesCS6D01G170000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G170000 chr6D 100.000 1947 0 0 1 1947 156452416 156454362 0.000000e+00 3596.0
1 TraesCS6D01G170000 chr6D 89.610 231 23 1 1717 1947 263993166 263993395 2.360000e-75 292.0
2 TraesCS6D01G170000 chr6D 100.000 124 0 0 2300 2423 156454715 156454838 1.870000e-56 230.0
3 TraesCS6D01G170000 chr6D 100.000 28 0 0 194 221 83966132 83966159 4.000000e-03 52.8
4 TraesCS6D01G170000 chr6B 93.021 1132 48 15 575 1689 279067814 279068931 0.000000e+00 1624.0
5 TraesCS6D01G170000 chr6B 94.656 131 7 0 91 221 279067640 279067770 1.140000e-48 204.0
6 TraesCS6D01G170000 chr6A 92.028 1129 37 21 575 1689 209904227 209905316 0.000000e+00 1537.0
7 TraesCS6D01G170000 chr6A 87.658 316 26 10 224 535 36496126 36495820 2.960000e-94 355.0
8 TraesCS6D01G170000 chr6A 91.855 221 12 3 5 221 209903966 209904184 1.090000e-78 303.0
9 TraesCS6D01G170000 chr5B 91.166 283 22 3 225 504 8364006 8364288 4.890000e-102 381.0
10 TraesCS6D01G170000 chr5B 88.710 186 17 2 1717 1899 512205970 512205786 8.720000e-55 224.0
11 TraesCS6D01G170000 chr5B 100.000 35 0 0 2389 2423 512196562 512196528 5.590000e-07 65.8
12 TraesCS6D01G170000 chr2D 89.320 309 23 8 225 529 618294475 618294777 1.760000e-101 379.0
13 TraesCS6D01G170000 chr2D 90.860 186 13 2 1717 1899 570985134 570985318 1.860000e-61 246.0
14 TraesCS6D01G170000 chr5D 90.813 283 23 3 225 504 433503248 433502966 2.270000e-100 375.0
15 TraesCS6D01G170000 chr3B 89.032 310 24 8 224 529 820354771 820355074 2.270000e-100 375.0
16 TraesCS6D01G170000 chr3B 95.122 41 2 0 2382 2422 576170412 576170372 5.590000e-07 65.8
17 TraesCS6D01G170000 chr2A 90.493 284 24 3 224 504 743327488 743327771 2.940000e-99 372.0
18 TraesCS6D01G170000 chr2A 88.571 210 22 2 1717 1926 708302057 708301850 1.110000e-63 254.0
19 TraesCS6D01G170000 chr4D 88.673 309 24 7 224 529 21890503 21890203 1.370000e-97 366.0
20 TraesCS6D01G170000 chr4D 92.147 191 14 1 1717 1907 29642749 29642560 3.970000e-68 268.0
21 TraesCS6D01G170000 chr4D 97.619 42 1 0 2382 2423 29641975 29641934 3.340000e-09 73.1
22 TraesCS6D01G170000 chr7B 87.781 311 28 8 223 529 674235642 674235946 2.960000e-94 355.0
23 TraesCS6D01G170000 chr1B 87.540 313 29 7 220 529 107070123 107069818 1.070000e-93 353.0
24 TraesCS6D01G170000 chr1B 97.500 40 1 0 2384 2423 217693735 217693774 4.320000e-08 69.4
25 TraesCS6D01G170000 chr4A 88.235 221 24 2 1717 1937 541018860 541018642 1.850000e-66 263.0
26 TraesCS6D01G170000 chr7D 90.860 186 13 2 1717 1899 181974733 181974549 1.860000e-61 246.0
27 TraesCS6D01G170000 chr3A 87.500 200 23 2 1717 1916 635321387 635321190 1.870000e-56 230.0
28 TraesCS6D01G170000 chr7A 85.845 219 22 3 1729 1947 518667679 518667888 8.720000e-55 224.0
29 TraesCS6D01G170000 chrUn 96.774 31 1 0 194 224 67962744 67962714 4.000000e-03 52.8
30 TraesCS6D01G170000 chrUn 100.000 28 0 0 194 221 86450108 86450135 4.000000e-03 52.8
31 TraesCS6D01G170000 chrUn 100.000 28 0 0 194 221 86456109 86456136 4.000000e-03 52.8
32 TraesCS6D01G170000 chrUn 96.774 31 1 0 194 224 222679168 222679138 4.000000e-03 52.8
33 TraesCS6D01G170000 chrUn 96.774 31 1 0 194 224 403918000 403917970 4.000000e-03 52.8
34 TraesCS6D01G170000 chr1A 100.000 28 0 0 194 221 575152571 575152598 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G170000 chr6D 156452416 156454838 2422 False 1913 3596 100.0000 1 2423 2 chr6D.!!$F3 2422
1 TraesCS6D01G170000 chr6B 279067640 279068931 1291 False 914 1624 93.8385 91 1689 2 chr6B.!!$F1 1598
2 TraesCS6D01G170000 chr6A 209903966 209905316 1350 False 920 1537 91.9415 5 1689 2 chr6A.!!$F1 1684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 518 0.028242 CGCTTGTGTTTGCGTTGGTA 59.972 50.0 0.0 0.0 46.09 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1804 0.030773 CGAGTTCGCTATGCCTGCTA 59.969 55.0 0.0 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 100 9.414295 CTGAATTGCATTTGACTTCTTAAATGA 57.586 29.630 12.37 0.00 43.51 2.57
105 109 8.592105 TTTGACTTCTTAAATGAAAATGCCTG 57.408 30.769 0.00 0.00 0.00 4.85
146 150 7.602644 TGTTGAGTTAATTCGAGAAAGCATAGT 59.397 33.333 0.00 0.00 0.00 2.12
151 155 8.230486 AGTTAATTCGAGAAAGCATAGTTGTTG 58.770 33.333 0.00 0.00 0.00 3.33
237 241 3.859411 TTTTTCTGCGAACCAACTTGT 57.141 38.095 0.00 0.00 0.00 3.16
238 242 2.842208 TTTCTGCGAACCAACTTGTG 57.158 45.000 0.00 0.00 0.00 3.33
252 256 4.447138 AACTTGTGGTTGGATGGTTAGA 57.553 40.909 0.00 0.00 36.70 2.10
253 257 4.021102 ACTTGTGGTTGGATGGTTAGAG 57.979 45.455 0.00 0.00 0.00 2.43
254 258 3.394606 ACTTGTGGTTGGATGGTTAGAGT 59.605 43.478 0.00 0.00 0.00 3.24
255 259 3.417069 TGTGGTTGGATGGTTAGAGTG 57.583 47.619 0.00 0.00 0.00 3.51
256 260 2.976185 TGTGGTTGGATGGTTAGAGTGA 59.024 45.455 0.00 0.00 0.00 3.41
257 261 3.244422 TGTGGTTGGATGGTTAGAGTGAC 60.244 47.826 0.00 0.00 0.00 3.67
258 262 3.008049 GTGGTTGGATGGTTAGAGTGACT 59.992 47.826 0.00 0.00 0.00 3.41
259 263 3.007940 TGGTTGGATGGTTAGAGTGACTG 59.992 47.826 0.00 0.00 0.00 3.51
260 264 3.008049 GGTTGGATGGTTAGAGTGACTGT 59.992 47.826 0.00 0.00 0.00 3.55
261 265 3.961480 TGGATGGTTAGAGTGACTGTG 57.039 47.619 0.00 0.00 0.00 3.66
262 266 2.567169 TGGATGGTTAGAGTGACTGTGG 59.433 50.000 0.00 0.00 0.00 4.17
263 267 2.567615 GGATGGTTAGAGTGACTGTGGT 59.432 50.000 0.00 0.00 0.00 4.16
264 268 3.767673 GGATGGTTAGAGTGACTGTGGTA 59.232 47.826 0.00 0.00 0.00 3.25
265 269 4.406003 GGATGGTTAGAGTGACTGTGGTAT 59.594 45.833 0.00 0.00 0.00 2.73
266 270 5.452077 GGATGGTTAGAGTGACTGTGGTATC 60.452 48.000 0.00 0.00 0.00 2.24
267 271 3.767673 TGGTTAGAGTGACTGTGGTATCC 59.232 47.826 0.00 0.00 0.00 2.59
268 272 3.132467 GGTTAGAGTGACTGTGGTATCCC 59.868 52.174 0.00 0.00 0.00 3.85
269 273 2.930109 AGAGTGACTGTGGTATCCCT 57.070 50.000 0.00 0.00 0.00 4.20
270 274 5.198965 GTTAGAGTGACTGTGGTATCCCTA 58.801 45.833 0.00 0.00 0.00 3.53
271 275 3.904717 AGAGTGACTGTGGTATCCCTAG 58.095 50.000 0.00 0.00 0.00 3.02
272 276 2.362717 GAGTGACTGTGGTATCCCTAGC 59.637 54.545 0.00 0.00 0.00 3.42
273 277 1.413077 GTGACTGTGGTATCCCTAGCC 59.587 57.143 0.00 0.00 0.00 3.93
274 278 1.049402 GACTGTGGTATCCCTAGCCC 58.951 60.000 0.00 0.00 0.00 5.19
275 279 0.341961 ACTGTGGTATCCCTAGCCCA 59.658 55.000 0.00 0.00 0.00 5.36
276 280 1.061346 ACTGTGGTATCCCTAGCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
277 281 1.625818 CTGTGGTATCCCTAGCCCATC 59.374 57.143 0.00 0.00 0.00 3.51
278 282 1.061735 TGTGGTATCCCTAGCCCATCA 60.062 52.381 0.00 0.00 0.00 3.07
279 283 1.625818 GTGGTATCCCTAGCCCATCAG 59.374 57.143 0.00 0.00 0.00 2.90
280 284 1.280457 GGTATCCCTAGCCCATCAGG 58.720 60.000 0.00 0.00 39.47 3.86
295 299 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
296 300 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
297 301 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
298 302 0.178990 GGGTTCAAGTCCTGGTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
299 303 0.954452 GGTTCAAGTCCTGGTGCTTG 59.046 55.000 19.84 19.84 42.32 4.01
300 304 0.312102 GTTCAAGTCCTGGTGCTTGC 59.688 55.000 20.58 10.19 41.15 4.01
301 305 0.106769 TTCAAGTCCTGGTGCTTGCA 60.107 50.000 20.58 12.56 41.15 4.08
302 306 0.111061 TCAAGTCCTGGTGCTTGCAT 59.889 50.000 20.58 0.00 41.15 3.96
303 307 0.963962 CAAGTCCTGGTGCTTGCATT 59.036 50.000 16.21 0.00 36.17 3.56
304 308 1.342174 CAAGTCCTGGTGCTTGCATTT 59.658 47.619 16.21 0.00 36.17 2.32
305 309 2.557924 CAAGTCCTGGTGCTTGCATTTA 59.442 45.455 16.21 0.00 36.17 1.40
306 310 3.091633 AGTCCTGGTGCTTGCATTTAT 57.908 42.857 0.00 0.00 0.00 1.40
307 311 3.434309 AGTCCTGGTGCTTGCATTTATT 58.566 40.909 0.00 0.00 0.00 1.40
308 312 3.834231 AGTCCTGGTGCTTGCATTTATTT 59.166 39.130 0.00 0.00 0.00 1.40
309 313 4.082026 AGTCCTGGTGCTTGCATTTATTTC 60.082 41.667 0.00 0.00 0.00 2.17
310 314 4.082026 GTCCTGGTGCTTGCATTTATTTCT 60.082 41.667 0.00 0.00 0.00 2.52
311 315 4.082081 TCCTGGTGCTTGCATTTATTTCTG 60.082 41.667 0.00 0.00 0.00 3.02
312 316 4.082081 CCTGGTGCTTGCATTTATTTCTGA 60.082 41.667 0.00 0.00 0.00 3.27
313 317 5.465532 TGGTGCTTGCATTTATTTCTGAA 57.534 34.783 0.00 0.00 0.00 3.02
314 318 6.040209 TGGTGCTTGCATTTATTTCTGAAT 57.960 33.333 0.00 0.00 0.00 2.57
315 319 6.465948 TGGTGCTTGCATTTATTTCTGAATT 58.534 32.000 0.00 0.00 0.00 2.17
316 320 6.935771 TGGTGCTTGCATTTATTTCTGAATTT 59.064 30.769 0.00 0.00 0.00 1.82
317 321 7.444792 TGGTGCTTGCATTTATTTCTGAATTTT 59.555 29.630 0.00 0.00 0.00 1.82
318 322 8.291740 GGTGCTTGCATTTATTTCTGAATTTTT 58.708 29.630 0.00 0.00 0.00 1.94
335 339 1.898902 TTTTTCAGGATTTCCGGCGA 58.101 45.000 9.30 0.00 42.08 5.54
336 340 2.122783 TTTTCAGGATTTCCGGCGAT 57.877 45.000 9.30 0.00 42.08 4.58
337 341 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
338 342 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
339 343 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
351 355 2.689083 CGATGCGCATTTAGTGGGA 58.311 52.632 26.12 0.00 43.02 4.37
352 356 0.583438 CGATGCGCATTTAGTGGGAG 59.417 55.000 26.12 4.12 43.02 4.30
353 357 0.947244 GATGCGCATTTAGTGGGAGG 59.053 55.000 26.12 0.00 43.02 4.30
354 358 0.546122 ATGCGCATTTAGTGGGAGGA 59.454 50.000 19.28 0.00 43.02 3.71
355 359 0.107703 TGCGCATTTAGTGGGAGGAG 60.108 55.000 5.66 0.00 43.02 3.69
356 360 0.178068 GCGCATTTAGTGGGAGGAGA 59.822 55.000 0.30 0.00 43.02 3.71
357 361 1.941325 CGCATTTAGTGGGAGGAGAC 58.059 55.000 0.00 0.00 43.02 3.36
358 362 1.802880 CGCATTTAGTGGGAGGAGACG 60.803 57.143 0.00 0.00 43.02 4.18
359 363 1.941325 CATTTAGTGGGAGGAGACGC 58.059 55.000 0.00 0.00 0.00 5.19
360 364 1.482593 CATTTAGTGGGAGGAGACGCT 59.517 52.381 0.00 0.00 0.00 5.07
361 365 1.183549 TTTAGTGGGAGGAGACGCTC 58.816 55.000 0.00 0.00 0.00 5.03
371 375 1.710339 GAGACGCTCCAATCAACGC 59.290 57.895 0.00 0.00 0.00 4.84
375 379 3.093278 GCTCCAATCAACGCGAGG 58.907 61.111 15.93 3.84 0.00 4.63
376 380 1.741770 GCTCCAATCAACGCGAGGT 60.742 57.895 15.93 0.00 0.00 3.85
383 387 3.179265 CAACGCGAGGTGCCTACG 61.179 66.667 15.93 10.43 44.78 3.51
384 388 4.430765 AACGCGAGGTGCCTACGG 62.431 66.667 15.93 7.22 42.08 4.02
387 391 3.755628 GCGAGGTGCCTACGGTGA 61.756 66.667 10.41 0.00 37.76 4.02
388 392 3.077519 GCGAGGTGCCTACGGTGAT 62.078 63.158 10.41 0.00 37.76 3.06
389 393 1.515954 CGAGGTGCCTACGGTGATT 59.484 57.895 0.00 0.00 0.00 2.57
390 394 0.108329 CGAGGTGCCTACGGTGATTT 60.108 55.000 0.00 0.00 0.00 2.17
391 395 1.674817 CGAGGTGCCTACGGTGATTTT 60.675 52.381 0.00 0.00 0.00 1.82
392 396 1.737793 GAGGTGCCTACGGTGATTTTG 59.262 52.381 0.00 0.00 0.00 2.44
393 397 1.073284 AGGTGCCTACGGTGATTTTGT 59.927 47.619 0.00 0.00 0.00 2.83
394 398 2.303600 AGGTGCCTACGGTGATTTTGTA 59.696 45.455 0.00 0.00 0.00 2.41
395 399 3.075884 GGTGCCTACGGTGATTTTGTAA 58.924 45.455 0.00 0.00 0.00 2.41
396 400 3.502979 GGTGCCTACGGTGATTTTGTAAA 59.497 43.478 0.00 0.00 0.00 2.01
397 401 4.157105 GGTGCCTACGGTGATTTTGTAAAT 59.843 41.667 0.00 0.00 0.00 1.40
398 402 5.336134 GGTGCCTACGGTGATTTTGTAAATT 60.336 40.000 0.00 0.00 0.00 1.82
399 403 6.153756 GTGCCTACGGTGATTTTGTAAATTT 58.846 36.000 0.00 0.00 0.00 1.82
400 404 6.307077 GTGCCTACGGTGATTTTGTAAATTTC 59.693 38.462 0.00 0.00 0.00 2.17
401 405 6.016192 TGCCTACGGTGATTTTGTAAATTTCA 60.016 34.615 0.00 0.00 0.00 2.69
402 406 6.864165 GCCTACGGTGATTTTGTAAATTTCAA 59.136 34.615 0.00 0.00 0.00 2.69
403 407 7.382759 GCCTACGGTGATTTTGTAAATTTCAAA 59.617 33.333 0.00 3.05 33.76 2.69
404 408 9.250624 CCTACGGTGATTTTGTAAATTTCAAAA 57.749 29.630 20.61 20.61 44.83 2.44
406 410 8.934507 ACGGTGATTTTGTAAATTTCAAAAGA 57.065 26.923 21.76 14.09 44.27 2.52
407 411 9.541143 ACGGTGATTTTGTAAATTTCAAAAGAT 57.459 25.926 21.76 13.19 44.27 2.40
414 418 8.472683 TTTGTAAATTTCAAAAGATATGCCGG 57.527 30.769 0.00 0.00 32.86 6.13
415 419 6.039616 TGTAAATTTCAAAAGATATGCCGGC 58.960 36.000 22.73 22.73 0.00 6.13
416 420 5.343307 AAATTTCAAAAGATATGCCGGCT 57.657 34.783 29.70 15.76 0.00 5.52
417 421 4.574599 ATTTCAAAAGATATGCCGGCTC 57.425 40.909 29.70 17.47 0.00 4.70
418 422 2.708216 TCAAAAGATATGCCGGCTCA 57.292 45.000 29.70 15.91 0.00 4.26
419 423 2.564771 TCAAAAGATATGCCGGCTCAG 58.435 47.619 29.70 8.56 0.00 3.35
420 424 2.092968 TCAAAAGATATGCCGGCTCAGT 60.093 45.455 29.70 13.44 0.00 3.41
421 425 2.246719 AAAGATATGCCGGCTCAGTC 57.753 50.000 29.70 19.22 0.00 3.51
422 426 1.418334 AAGATATGCCGGCTCAGTCT 58.582 50.000 29.70 21.09 0.00 3.24
423 427 1.418334 AGATATGCCGGCTCAGTCTT 58.582 50.000 29.70 5.10 0.00 3.01
424 428 1.765314 AGATATGCCGGCTCAGTCTTT 59.235 47.619 29.70 3.35 0.00 2.52
425 429 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
426 430 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
427 431 1.888436 ATGCCGGCTCAGTCTTTCGA 61.888 55.000 29.70 1.81 0.00 3.71
428 432 1.807573 GCCGGCTCAGTCTTTCGAG 60.808 63.158 22.15 0.00 0.00 4.04
429 433 1.153745 CCGGCTCAGTCTTTCGAGG 60.154 63.158 0.00 0.00 0.00 4.63
430 434 1.587054 CGGCTCAGTCTTTCGAGGT 59.413 57.895 0.00 0.00 0.00 3.85
431 435 0.734253 CGGCTCAGTCTTTCGAGGTG 60.734 60.000 0.00 0.00 0.00 4.00
432 436 1.016653 GGCTCAGTCTTTCGAGGTGC 61.017 60.000 0.00 0.00 0.00 5.01
433 437 0.037790 GCTCAGTCTTTCGAGGTGCT 60.038 55.000 0.00 0.00 0.00 4.40
434 438 1.989430 CTCAGTCTTTCGAGGTGCTC 58.011 55.000 0.00 0.00 0.00 4.26
435 439 1.270826 CTCAGTCTTTCGAGGTGCTCA 59.729 52.381 0.00 0.00 0.00 4.26
436 440 1.895798 TCAGTCTTTCGAGGTGCTCAT 59.104 47.619 0.00 0.00 0.00 2.90
437 441 3.089284 TCAGTCTTTCGAGGTGCTCATA 58.911 45.455 0.00 0.00 0.00 2.15
438 442 3.129462 TCAGTCTTTCGAGGTGCTCATAG 59.871 47.826 0.00 0.00 0.00 2.23
439 443 2.428890 AGTCTTTCGAGGTGCTCATAGG 59.571 50.000 0.00 0.00 0.00 2.57
440 444 1.757118 TCTTTCGAGGTGCTCATAGGG 59.243 52.381 0.00 0.00 0.00 3.53
441 445 0.830648 TTTCGAGGTGCTCATAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
442 446 0.325296 TTCGAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
443 447 0.554305 TCGAGGTGCTCATAGGGGTA 59.446 55.000 0.00 0.00 0.00 3.69
444 448 0.962489 CGAGGTGCTCATAGGGGTAG 59.038 60.000 0.00 0.00 0.00 3.18
445 449 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
446 450 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
447 451 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
448 452 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
449 453 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
450 454 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
451 455 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
452 456 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
453 457 2.440817 ATAGGGGTAGGGTGTGCGC 61.441 63.158 0.00 0.00 0.00 6.09
457 461 4.675029 GGTAGGGTGTGCGCGTGT 62.675 66.667 8.43 0.00 0.00 4.49
458 462 2.259204 GTAGGGTGTGCGCGTGTA 59.741 61.111 8.43 0.00 0.00 2.90
459 463 2.090524 GTAGGGTGTGCGCGTGTAC 61.091 63.158 8.43 10.48 0.00 2.90
460 464 3.613952 TAGGGTGTGCGCGTGTACG 62.614 63.158 8.43 0.00 43.27 3.67
462 466 3.332409 GGTGTGCGCGTGTACGTT 61.332 61.111 8.43 0.00 42.22 3.99
463 467 2.622085 GTGTGCGCGTGTACGTTT 59.378 55.556 8.43 0.00 42.22 3.60
464 468 1.547292 GGTGTGCGCGTGTACGTTTA 61.547 55.000 8.43 0.00 42.22 2.01
465 469 0.435769 GTGTGCGCGTGTACGTTTAT 59.564 50.000 8.43 0.00 42.22 1.40
466 470 1.648191 GTGTGCGCGTGTACGTTTATA 59.352 47.619 8.43 0.00 42.22 0.98
467 471 1.912756 TGTGCGCGTGTACGTTTATAG 59.087 47.619 8.43 0.00 42.22 1.31
468 472 1.253545 GTGCGCGTGTACGTTTATAGG 59.746 52.381 8.43 0.00 42.22 2.57
469 473 0.848305 GCGCGTGTACGTTTATAGGG 59.152 55.000 8.43 0.00 42.22 3.53
470 474 1.480205 CGCGTGTACGTTTATAGGGG 58.520 55.000 0.00 0.00 42.22 4.79
471 475 1.202290 CGCGTGTACGTTTATAGGGGT 60.202 52.381 0.00 0.00 42.22 4.95
472 476 2.195922 GCGTGTACGTTTATAGGGGTG 58.804 52.381 6.27 0.00 42.22 4.61
473 477 2.159254 GCGTGTACGTTTATAGGGGTGA 60.159 50.000 6.27 0.00 42.22 4.02
474 478 3.699067 CGTGTACGTTTATAGGGGTGAG 58.301 50.000 0.00 0.00 34.11 3.51
475 479 3.129287 CGTGTACGTTTATAGGGGTGAGT 59.871 47.826 0.00 0.00 34.11 3.41
476 480 4.427312 GTGTACGTTTATAGGGGTGAGTG 58.573 47.826 0.00 0.00 0.00 3.51
477 481 4.082026 GTGTACGTTTATAGGGGTGAGTGT 60.082 45.833 0.00 0.00 0.00 3.55
478 482 5.125417 GTGTACGTTTATAGGGGTGAGTGTA 59.875 44.000 0.00 0.00 0.00 2.90
479 483 5.893255 TGTACGTTTATAGGGGTGAGTGTAT 59.107 40.000 0.00 0.00 0.00 2.29
480 484 5.272283 ACGTTTATAGGGGTGAGTGTATG 57.728 43.478 0.00 0.00 0.00 2.39
481 485 4.056050 CGTTTATAGGGGTGAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
482 486 4.442332 CGTTTATAGGGGTGAGTGTATGCA 60.442 45.833 0.00 0.00 0.00 3.96
483 487 4.682778 TTATAGGGGTGAGTGTATGCAC 57.317 45.455 5.71 5.71 45.57 4.57
495 499 4.631133 GTGTATGCACGTGTATATGAGC 57.369 45.455 25.81 15.09 35.75 4.26
496 500 3.119628 GTGTATGCACGTGTATATGAGCG 59.880 47.826 25.81 0.00 35.75 5.03
497 501 1.139989 ATGCACGTGTATATGAGCGC 58.860 50.000 18.03 0.00 32.85 5.92
498 502 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92
499 503 1.209128 GCACGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 0.00 4.68
500 504 1.071239 GCACGTGTATATGAGCGCTTG 60.071 52.381 13.26 2.09 0.00 4.01
501 505 2.193447 CACGTGTATATGAGCGCTTGT 58.807 47.619 13.26 5.98 0.00 3.16
502 506 2.034591 CACGTGTATATGAGCGCTTGTG 60.035 50.000 13.26 5.89 0.00 3.33
503 507 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
504 508 2.603110 CGTGTATATGAGCGCTTGTGTT 59.397 45.455 13.26 0.00 0.00 3.32
505 509 3.062099 CGTGTATATGAGCGCTTGTGTTT 59.938 43.478 13.26 0.00 0.00 2.83
506 510 4.334443 GTGTATATGAGCGCTTGTGTTTG 58.666 43.478 13.26 0.00 0.00 2.93
507 511 2.549633 ATATGAGCGCTTGTGTTTGC 57.450 45.000 13.26 0.00 0.00 3.68
512 516 3.599568 CGCTTGTGTTTGCGTTGG 58.400 55.556 0.00 0.00 46.09 3.77
513 517 1.226547 CGCTTGTGTTTGCGTTGGT 60.227 52.632 0.00 0.00 46.09 3.67
514 518 0.028242 CGCTTGTGTTTGCGTTGGTA 59.972 50.000 0.00 0.00 46.09 3.25
515 519 1.472990 GCTTGTGTTTGCGTTGGTAC 58.527 50.000 0.00 0.00 0.00 3.34
516 520 1.064952 GCTTGTGTTTGCGTTGGTACT 59.935 47.619 0.00 0.00 0.00 2.73
517 521 2.715268 CTTGTGTTTGCGTTGGTACTG 58.285 47.619 0.00 0.00 0.00 2.74
518 522 1.740297 TGTGTTTGCGTTGGTACTGT 58.260 45.000 0.00 0.00 0.00 3.55
519 523 1.398739 TGTGTTTGCGTTGGTACTGTG 59.601 47.619 0.00 0.00 0.00 3.66
520 524 1.399089 GTGTTTGCGTTGGTACTGTGT 59.601 47.619 0.00 0.00 0.00 3.72
521 525 2.085320 TGTTTGCGTTGGTACTGTGTT 58.915 42.857 0.00 0.00 0.00 3.32
522 526 3.063725 GTGTTTGCGTTGGTACTGTGTTA 59.936 43.478 0.00 0.00 0.00 2.41
523 527 3.688185 TGTTTGCGTTGGTACTGTGTTAA 59.312 39.130 0.00 0.00 0.00 2.01
524 528 4.155462 TGTTTGCGTTGGTACTGTGTTAAA 59.845 37.500 0.00 0.00 0.00 1.52
525 529 4.959596 TTGCGTTGGTACTGTGTTAAAA 57.040 36.364 0.00 0.00 0.00 1.52
526 530 4.959596 TGCGTTGGTACTGTGTTAAAAA 57.040 36.364 0.00 0.00 0.00 1.94
550 554 9.902196 AAAAATCATTTTTCCATTGAATTGCTC 57.098 25.926 1.98 0.00 38.39 4.26
551 555 8.624367 AAATCATTTTTCCATTGAATTGCTCA 57.376 26.923 0.00 0.00 0.00 4.26
552 556 8.801882 AATCATTTTTCCATTGAATTGCTCAT 57.198 26.923 0.00 0.00 32.78 2.90
553 557 8.801882 ATCATTTTTCCATTGAATTGCTCATT 57.198 26.923 0.00 0.00 32.78 2.57
554 558 8.624367 TCATTTTTCCATTGAATTGCTCATTT 57.376 26.923 0.00 0.00 32.78 2.32
555 559 8.723311 TCATTTTTCCATTGAATTGCTCATTTC 58.277 29.630 0.00 0.00 32.78 2.17
595 608 1.804601 AGTTCCAATCCGTTCCGTTC 58.195 50.000 0.00 0.00 0.00 3.95
609 622 1.068474 CCGTTCGGATATTGATCGGC 58.932 55.000 5.19 0.00 40.55 5.54
623 636 5.459110 TTGATCGGCGTACATCTTTTAAC 57.541 39.130 6.85 0.00 0.00 2.01
724 739 4.347000 AGCAAGTACTTGTAGAAGTTGGGA 59.653 41.667 30.90 0.00 39.56 4.37
728 743 5.145564 AGTACTTGTAGAAGTTGGGACTCA 58.854 41.667 10.92 0.00 39.56 3.41
730 745 3.243771 ACTTGTAGAAGTTGGGACTCACG 60.244 47.826 0.00 0.00 39.56 4.35
731 746 2.313317 TGTAGAAGTTGGGACTCACGT 58.687 47.619 0.00 0.00 34.21 4.49
733 748 3.890756 TGTAGAAGTTGGGACTCACGTAA 59.109 43.478 0.00 0.00 34.21 3.18
734 749 4.341806 TGTAGAAGTTGGGACTCACGTAAA 59.658 41.667 0.00 0.00 34.21 2.01
737 752 3.547054 AGTTGGGACTCACGTAAACAA 57.453 42.857 0.00 0.00 0.00 2.83
738 753 3.200483 AGTTGGGACTCACGTAAACAAC 58.800 45.455 0.00 0.00 37.56 3.32
739 754 3.118519 AGTTGGGACTCACGTAAACAACT 60.119 43.478 11.77 11.77 41.32 3.16
741 756 2.224113 TGGGACTCACGTAAACAACTCC 60.224 50.000 0.00 0.00 0.00 3.85
742 757 2.224113 GGGACTCACGTAAACAACTCCA 60.224 50.000 0.00 0.00 0.00 3.86
743 758 2.798847 GGACTCACGTAAACAACTCCAC 59.201 50.000 0.00 0.00 0.00 4.02
745 760 1.790623 CTCACGTAAACAACTCCACCG 59.209 52.381 0.00 0.00 0.00 4.94
747 762 1.523934 CACGTAAACAACTCCACCGAC 59.476 52.381 0.00 0.00 0.00 4.79
748 763 1.410153 ACGTAAACAACTCCACCGACT 59.590 47.619 0.00 0.00 0.00 4.18
750 765 2.410939 GTAAACAACTCCACCGACTCC 58.589 52.381 0.00 0.00 0.00 3.85
751 766 0.834612 AAACAACTCCACCGACTCCA 59.165 50.000 0.00 0.00 0.00 3.86
753 768 0.321671 ACAACTCCACCGACTCCATG 59.678 55.000 0.00 0.00 0.00 3.66
754 769 0.391661 CAACTCCACCGACTCCATGG 60.392 60.000 4.97 4.97 34.58 3.66
756 771 2.284625 TCCACCGACTCCATGGCT 60.285 61.111 6.96 0.00 33.20 4.75
757 772 2.187946 CCACCGACTCCATGGCTC 59.812 66.667 6.96 2.85 0.00 4.70
758 773 2.187946 CACCGACTCCATGGCTCC 59.812 66.667 6.96 0.00 0.00 4.70
759 774 2.284625 ACCGACTCCATGGCTCCA 60.285 61.111 6.96 0.00 0.00 3.86
760 775 1.690633 ACCGACTCCATGGCTCCAT 60.691 57.895 6.96 0.00 37.08 3.41
768 783 2.191375 ATGGCTCCATGGCTCACG 59.809 61.111 6.96 0.00 42.34 4.35
769 784 2.673200 ATGGCTCCATGGCTCACGT 61.673 57.895 6.96 0.00 42.34 4.49
868 886 4.843220 AAGTCAAACAATCTGCTTCTGG 57.157 40.909 0.00 0.00 0.00 3.86
900 918 8.026026 CACACCTCTATATATACAAGCACAGAG 58.974 40.741 0.00 0.00 0.00 3.35
926 944 0.601311 ACGCTCCAAGAAGCACTCAC 60.601 55.000 0.00 0.00 42.62 3.51
927 945 0.320247 CGCTCCAAGAAGCACTCACT 60.320 55.000 0.00 0.00 42.62 3.41
928 946 1.155042 GCTCCAAGAAGCACTCACTG 58.845 55.000 0.00 0.00 42.05 3.66
936 954 3.360340 GCACTCACTGCACCAGCC 61.360 66.667 0.00 0.00 46.29 4.85
1014 1047 3.737172 GCAATGCCGCGTCACCTT 61.737 61.111 4.92 0.00 0.00 3.50
1607 1648 7.125792 TCTCTATTAACATTCTCTTGGGACC 57.874 40.000 0.00 0.00 0.00 4.46
1621 1662 0.035458 GGGACCTGTGTGTTCCTCTG 59.965 60.000 0.00 0.00 30.50 3.35
1695 1743 2.286365 CCTGAGTTTAGGCCAAACCA 57.714 50.000 20.36 17.20 46.55 3.67
1696 1744 2.593026 CCTGAGTTTAGGCCAAACCAA 58.407 47.619 20.36 12.03 46.55 3.67
1697 1745 2.962421 CCTGAGTTTAGGCCAAACCAAA 59.038 45.455 20.36 10.28 46.55 3.28
1698 1746 3.243737 CCTGAGTTTAGGCCAAACCAAAC 60.244 47.826 20.36 14.41 46.55 2.93
1699 1747 2.696187 TGAGTTTAGGCCAAACCAAACC 59.304 45.455 20.36 10.45 46.55 3.27
1700 1748 1.684450 AGTTTAGGCCAAACCAAACCG 59.316 47.619 20.36 0.00 46.55 4.44
1701 1749 0.389757 TTTAGGCCAAACCAAACCGC 59.610 50.000 5.01 0.00 43.14 5.68
1702 1750 0.755698 TTAGGCCAAACCAAACCGCA 60.756 50.000 5.01 0.00 43.14 5.69
1703 1751 1.457009 TAGGCCAAACCAAACCGCAC 61.457 55.000 5.01 0.00 43.14 5.34
1704 1752 2.656973 GCCAAACCAAACCGCACG 60.657 61.111 0.00 0.00 0.00 5.34
1705 1753 3.111939 CCAAACCAAACCGCACGA 58.888 55.556 0.00 0.00 0.00 4.35
1706 1754 1.657556 CCAAACCAAACCGCACGAT 59.342 52.632 0.00 0.00 0.00 3.73
1707 1755 0.031449 CCAAACCAAACCGCACGATT 59.969 50.000 0.00 0.00 0.00 3.34
1708 1756 1.404477 CAAACCAAACCGCACGATTC 58.596 50.000 0.00 0.00 0.00 2.52
1709 1757 1.025812 AAACCAAACCGCACGATTCA 58.974 45.000 0.00 0.00 0.00 2.57
1710 1758 1.025812 AACCAAACCGCACGATTCAA 58.974 45.000 0.00 0.00 0.00 2.69
1711 1759 1.025812 ACCAAACCGCACGATTCAAA 58.974 45.000 0.00 0.00 0.00 2.69
1712 1760 1.405821 ACCAAACCGCACGATTCAAAA 59.594 42.857 0.00 0.00 0.00 2.44
1713 1761 2.035321 ACCAAACCGCACGATTCAAAAT 59.965 40.909 0.00 0.00 0.00 1.82
1714 1762 2.661195 CCAAACCGCACGATTCAAAATC 59.339 45.455 0.00 0.00 0.00 2.17
1715 1763 3.564511 CAAACCGCACGATTCAAAATCT 58.435 40.909 0.00 0.00 0.00 2.40
1716 1764 4.378978 CCAAACCGCACGATTCAAAATCTA 60.379 41.667 0.00 0.00 0.00 1.98
1717 1765 5.331902 CAAACCGCACGATTCAAAATCTAT 58.668 37.500 0.00 0.00 0.00 1.98
1718 1766 5.560966 AACCGCACGATTCAAAATCTATT 57.439 34.783 0.00 0.00 0.00 1.73
1719 1767 5.560966 ACCGCACGATTCAAAATCTATTT 57.439 34.783 0.00 0.00 0.00 1.40
1720 1768 5.569413 ACCGCACGATTCAAAATCTATTTC 58.431 37.500 0.00 0.00 0.00 2.17
1721 1769 5.123186 ACCGCACGATTCAAAATCTATTTCA 59.877 36.000 0.00 0.00 0.00 2.69
1722 1770 6.027131 CCGCACGATTCAAAATCTATTTCAA 58.973 36.000 0.00 0.00 0.00 2.69
1723 1771 6.021468 CCGCACGATTCAAAATCTATTTCAAC 60.021 38.462 0.00 0.00 0.00 3.18
1724 1772 6.522855 CGCACGATTCAAAATCTATTTCAACA 59.477 34.615 0.00 0.00 0.00 3.33
1725 1773 7.253092 CGCACGATTCAAAATCTATTTCAACAG 60.253 37.037 0.00 0.00 0.00 3.16
1726 1774 7.538678 GCACGATTCAAAATCTATTTCAACAGT 59.461 33.333 0.00 0.00 0.00 3.55
1727 1775 9.398170 CACGATTCAAAATCTATTTCAACAGTT 57.602 29.630 0.00 0.00 0.00 3.16
1728 1776 9.398170 ACGATTCAAAATCTATTTCAACAGTTG 57.602 29.630 6.99 6.99 0.00 3.16
1729 1777 9.398170 CGATTCAAAATCTATTTCAACAGTTGT 57.602 29.630 13.14 0.00 0.00 3.32
1731 1779 9.696917 ATTCAAAATCTATTTCAACAGTTGTCC 57.303 29.630 13.14 0.00 0.00 4.02
1732 1780 7.359595 TCAAAATCTATTTCAACAGTTGTCCG 58.640 34.615 13.14 0.00 0.00 4.79
1733 1781 6.877611 AAATCTATTTCAACAGTTGTCCGT 57.122 33.333 13.14 1.62 0.00 4.69
1734 1782 6.481954 AATCTATTTCAACAGTTGTCCGTC 57.518 37.500 13.14 0.00 0.00 4.79
1735 1783 4.312443 TCTATTTCAACAGTTGTCCGTCC 58.688 43.478 13.14 0.00 0.00 4.79
1736 1784 2.702592 TTTCAACAGTTGTCCGTCCT 57.297 45.000 13.14 0.00 0.00 3.85
1737 1785 2.234300 TTCAACAGTTGTCCGTCCTC 57.766 50.000 13.14 0.00 0.00 3.71
1738 1786 0.031585 TCAACAGTTGTCCGTCCTCG 59.968 55.000 13.14 0.00 0.00 4.63
1739 1787 0.249322 CAACAGTTGTCCGTCCTCGT 60.249 55.000 4.99 0.00 35.01 4.18
1740 1788 0.031721 AACAGTTGTCCGTCCTCGTC 59.968 55.000 0.00 0.00 35.01 4.20
1741 1789 1.105167 ACAGTTGTCCGTCCTCGTCA 61.105 55.000 0.00 0.00 35.01 4.35
1742 1790 0.243907 CAGTTGTCCGTCCTCGTCAT 59.756 55.000 0.00 0.00 35.01 3.06
1743 1791 0.966920 AGTTGTCCGTCCTCGTCATT 59.033 50.000 0.00 0.00 35.01 2.57
1744 1792 1.343465 AGTTGTCCGTCCTCGTCATTT 59.657 47.619 0.00 0.00 35.01 2.32
1745 1793 1.725164 GTTGTCCGTCCTCGTCATTTC 59.275 52.381 0.00 0.00 35.01 2.17
1746 1794 1.254026 TGTCCGTCCTCGTCATTTCT 58.746 50.000 0.00 0.00 35.01 2.52
1747 1795 1.616865 TGTCCGTCCTCGTCATTTCTT 59.383 47.619 0.00 0.00 35.01 2.52
1748 1796 2.260481 GTCCGTCCTCGTCATTTCTTC 58.740 52.381 0.00 0.00 35.01 2.87
1749 1797 1.135489 TCCGTCCTCGTCATTTCTTCG 60.135 52.381 0.00 0.00 35.01 3.79
1750 1798 1.135489 CCGTCCTCGTCATTTCTTCGA 60.135 52.381 0.00 0.00 35.01 3.71
1751 1799 2.592194 CGTCCTCGTCATTTCTTCGAA 58.408 47.619 0.00 0.00 33.32 3.71
1752 1800 2.341760 CGTCCTCGTCATTTCTTCGAAC 59.658 50.000 0.00 0.00 33.32 3.95
1753 1801 3.314553 GTCCTCGTCATTTCTTCGAACA 58.685 45.455 0.00 0.00 33.32 3.18
1754 1802 3.121445 GTCCTCGTCATTTCTTCGAACAC 59.879 47.826 0.00 0.00 33.32 3.32
1755 1803 2.090658 CCTCGTCATTTCTTCGAACACG 59.909 50.000 0.00 0.00 33.32 4.49
1756 1804 2.724690 CTCGTCATTTCTTCGAACACGT 59.275 45.455 0.00 0.00 33.32 4.49
1757 1805 3.887741 TCGTCATTTCTTCGAACACGTA 58.112 40.909 0.00 0.00 0.00 3.57
1758 1806 3.910170 TCGTCATTTCTTCGAACACGTAG 59.090 43.478 0.00 0.00 0.00 3.51
1759 1807 3.479866 CGTCATTTCTTCGAACACGTAGC 60.480 47.826 0.00 0.00 0.00 3.58
1760 1808 3.427528 GTCATTTCTTCGAACACGTAGCA 59.572 43.478 0.00 0.00 0.00 3.49
1761 1809 3.673338 TCATTTCTTCGAACACGTAGCAG 59.327 43.478 0.00 0.00 0.00 4.24
1762 1810 2.060326 TTCTTCGAACACGTAGCAGG 57.940 50.000 0.00 0.00 0.00 4.85
1763 1811 0.388134 TCTTCGAACACGTAGCAGGC 60.388 55.000 0.00 0.00 0.00 4.85
1764 1812 0.666274 CTTCGAACACGTAGCAGGCA 60.666 55.000 0.00 0.00 0.00 4.75
1765 1813 0.037697 TTCGAACACGTAGCAGGCAT 60.038 50.000 0.00 0.00 0.00 4.40
1766 1814 0.812549 TCGAACACGTAGCAGGCATA 59.187 50.000 0.00 0.00 0.00 3.14
1767 1815 1.200483 CGAACACGTAGCAGGCATAG 58.800 55.000 0.00 0.00 0.00 2.23
1768 1816 0.931005 GAACACGTAGCAGGCATAGC 59.069 55.000 0.00 0.00 0.00 2.97
1769 1817 0.806102 AACACGTAGCAGGCATAGCG 60.806 55.000 0.00 0.00 37.01 4.26
1770 1818 1.065764 CACGTAGCAGGCATAGCGA 59.934 57.895 0.00 0.00 37.01 4.93
1771 1819 0.527600 CACGTAGCAGGCATAGCGAA 60.528 55.000 0.00 0.00 37.01 4.70
1772 1820 0.527817 ACGTAGCAGGCATAGCGAAC 60.528 55.000 0.00 0.00 37.01 3.95
1773 1821 0.249073 CGTAGCAGGCATAGCGAACT 60.249 55.000 0.00 0.00 37.01 3.01
1774 1822 1.492720 GTAGCAGGCATAGCGAACTC 58.507 55.000 0.00 0.00 37.01 3.01
1775 1823 0.030773 TAGCAGGCATAGCGAACTCG 59.969 55.000 0.00 0.00 43.27 4.18
1796 1844 2.743928 CCGCAACCACTCCTGCTC 60.744 66.667 0.00 0.00 36.38 4.26
1797 1845 2.031012 CGCAACCACTCCTGCTCA 59.969 61.111 0.00 0.00 36.38 4.26
1798 1846 1.376424 CGCAACCACTCCTGCTCAT 60.376 57.895 0.00 0.00 36.38 2.90
1799 1847 1.642037 CGCAACCACTCCTGCTCATG 61.642 60.000 0.00 0.00 36.38 3.07
1800 1848 1.930908 GCAACCACTCCTGCTCATGC 61.931 60.000 0.00 0.00 35.62 4.06
1802 1850 0.607489 AACCACTCCTGCTCATGCAC 60.607 55.000 0.00 0.00 45.31 4.57
1803 1851 2.104859 CCACTCCTGCTCATGCACG 61.105 63.158 0.00 0.00 45.31 5.34
1804 1852 2.435586 ACTCCTGCTCATGCACGC 60.436 61.111 0.00 0.00 45.31 5.34
1805 1853 3.200593 CTCCTGCTCATGCACGCC 61.201 66.667 0.00 0.00 45.31 5.68
1806 1854 4.783621 TCCTGCTCATGCACGCCC 62.784 66.667 0.00 0.00 45.31 6.13
1807 1855 4.790962 CCTGCTCATGCACGCCCT 62.791 66.667 0.00 0.00 45.31 5.19
1808 1856 3.200593 CTGCTCATGCACGCCCTC 61.201 66.667 0.00 0.00 45.31 4.30
1811 1859 4.827087 CTCATGCACGCCCTCGCT 62.827 66.667 0.00 0.00 39.84 4.93
1812 1860 4.819761 TCATGCACGCCCTCGCTC 62.820 66.667 0.00 0.00 39.84 5.03
1817 1865 4.803426 CACGCCCTCGCTCCTGTC 62.803 72.222 0.00 0.00 39.84 3.51
1827 1875 4.498520 CTCCTGTCGCGACCGCAT 62.499 66.667 34.34 0.00 42.06 4.73
1828 1876 4.794439 TCCTGTCGCGACCGCATG 62.794 66.667 34.34 18.29 42.06 4.06
1907 1955 4.308458 CACGCCTCGTCCACCCAA 62.308 66.667 0.00 0.00 38.32 4.12
1908 1956 4.003788 ACGCCTCGTCCACCCAAG 62.004 66.667 0.00 0.00 33.69 3.61
1910 1958 4.021925 GCCTCGTCCACCCAAGCT 62.022 66.667 0.00 0.00 0.00 3.74
1911 1959 2.266055 CCTCGTCCACCCAAGCTC 59.734 66.667 0.00 0.00 0.00 4.09
1912 1960 2.286523 CCTCGTCCACCCAAGCTCT 61.287 63.158 0.00 0.00 0.00 4.09
1913 1961 1.216710 CTCGTCCACCCAAGCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
1914 1962 2.232298 CTCGTCCACCCAAGCTCTCC 62.232 65.000 0.00 0.00 0.00 3.71
1915 1963 2.266055 GTCCACCCAAGCTCTCCG 59.734 66.667 0.00 0.00 0.00 4.63
1916 1964 3.706373 TCCACCCAAGCTCTCCGC 61.706 66.667 0.00 0.00 39.57 5.54
2403 2451 4.087892 CACAGGGAGTGGGAGGCG 62.088 72.222 0.00 0.00 44.69 5.52
2406 2454 4.787280 AGGGAGTGGGAGGCGGAG 62.787 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 70 7.516198 AAGAAGTCAAATGCAATTCAGTACT 57.484 32.000 0.00 0.00 33.67 2.73
67 71 9.677567 TTTAAGAAGTCAAATGCAATTCAGTAC 57.322 29.630 0.00 0.00 33.67 2.73
96 100 6.403866 TGTCTATGTTTGAACAGGCATTTT 57.596 33.333 2.77 0.00 43.04 1.82
146 150 4.451629 TGTTTTTCTTTACGGGCAACAA 57.548 36.364 0.00 0.00 39.74 2.83
151 155 3.727227 CGAACTTGTTTTTCTTTACGGGC 59.273 43.478 0.00 0.00 0.00 6.13
221 225 2.701587 CCACAAGTTGGTTCGCAGA 58.298 52.632 7.96 0.00 41.10 4.26
231 235 4.141251 ACTCTAACCATCCAACCACAAGTT 60.141 41.667 0.00 0.00 40.16 2.66
232 236 3.394606 ACTCTAACCATCCAACCACAAGT 59.605 43.478 0.00 0.00 0.00 3.16
233 237 3.753272 CACTCTAACCATCCAACCACAAG 59.247 47.826 0.00 0.00 0.00 3.16
234 238 3.392947 TCACTCTAACCATCCAACCACAA 59.607 43.478 0.00 0.00 0.00 3.33
235 239 2.976185 TCACTCTAACCATCCAACCACA 59.024 45.455 0.00 0.00 0.00 4.17
236 240 3.008049 AGTCACTCTAACCATCCAACCAC 59.992 47.826 0.00 0.00 0.00 4.16
237 241 3.007940 CAGTCACTCTAACCATCCAACCA 59.992 47.826 0.00 0.00 0.00 3.67
238 242 3.008049 ACAGTCACTCTAACCATCCAACC 59.992 47.826 0.00 0.00 0.00 3.77
239 243 3.997021 CACAGTCACTCTAACCATCCAAC 59.003 47.826 0.00 0.00 0.00 3.77
240 244 3.007940 CCACAGTCACTCTAACCATCCAA 59.992 47.826 0.00 0.00 0.00 3.53
241 245 2.567169 CCACAGTCACTCTAACCATCCA 59.433 50.000 0.00 0.00 0.00 3.41
242 246 2.567615 ACCACAGTCACTCTAACCATCC 59.432 50.000 0.00 0.00 0.00 3.51
243 247 3.963428 ACCACAGTCACTCTAACCATC 57.037 47.619 0.00 0.00 0.00 3.51
244 248 4.406003 GGATACCACAGTCACTCTAACCAT 59.594 45.833 0.00 0.00 0.00 3.55
245 249 3.767673 GGATACCACAGTCACTCTAACCA 59.232 47.826 0.00 0.00 0.00 3.67
246 250 4.388378 GGATACCACAGTCACTCTAACC 57.612 50.000 0.00 0.00 0.00 2.85
278 282 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
279 283 0.178990 AAGCACCAGGACTTGAACCC 60.179 55.000 0.00 0.00 0.00 4.11
280 284 0.954452 CAAGCACCAGGACTTGAACC 59.046 55.000 17.37 0.00 44.89 3.62
281 285 0.312102 GCAAGCACCAGGACTTGAAC 59.688 55.000 23.33 8.98 44.89 3.18
282 286 0.106769 TGCAAGCACCAGGACTTGAA 60.107 50.000 23.33 14.64 44.89 2.69
283 287 0.111061 ATGCAAGCACCAGGACTTGA 59.889 50.000 23.33 12.92 44.89 3.02
284 288 0.963962 AATGCAAGCACCAGGACTTG 59.036 50.000 17.76 17.76 44.88 3.16
285 289 1.708341 AAATGCAAGCACCAGGACTT 58.292 45.000 0.00 0.00 0.00 3.01
286 290 2.584835 TAAATGCAAGCACCAGGACT 57.415 45.000 0.00 0.00 0.00 3.85
287 291 3.874392 AATAAATGCAAGCACCAGGAC 57.126 42.857 0.00 0.00 0.00 3.85
288 292 4.082081 CAGAAATAAATGCAAGCACCAGGA 60.082 41.667 0.00 0.00 0.00 3.86
289 293 4.082081 TCAGAAATAAATGCAAGCACCAGG 60.082 41.667 0.00 0.00 0.00 4.45
290 294 5.063180 TCAGAAATAAATGCAAGCACCAG 57.937 39.130 0.00 0.00 0.00 4.00
291 295 5.465532 TTCAGAAATAAATGCAAGCACCA 57.534 34.783 0.00 0.00 0.00 4.17
292 296 6.973229 AATTCAGAAATAAATGCAAGCACC 57.027 33.333 0.00 0.00 0.00 5.01
316 320 1.898902 TCGCCGGAAATCCTGAAAAA 58.101 45.000 5.05 0.00 0.00 1.94
317 321 1.742831 CATCGCCGGAAATCCTGAAAA 59.257 47.619 5.05 0.00 0.00 2.29
318 322 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
319 323 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
320 324 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
321 325 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
322 326 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
333 337 0.583438 CTCCCACTAAATGCGCATCG 59.417 55.000 25.53 17.09 0.00 3.84
334 338 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
335 339 0.546122 TCCTCCCACTAAATGCGCAT 59.454 50.000 19.28 19.28 0.00 4.73
336 340 0.107703 CTCCTCCCACTAAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
337 341 0.178068 TCTCCTCCCACTAAATGCGC 59.822 55.000 0.00 0.00 0.00 6.09
338 342 1.802880 CGTCTCCTCCCACTAAATGCG 60.803 57.143 0.00 0.00 0.00 4.73
339 343 1.941325 CGTCTCCTCCCACTAAATGC 58.059 55.000 0.00 0.00 0.00 3.56
340 344 1.482593 AGCGTCTCCTCCCACTAAATG 59.517 52.381 0.00 0.00 0.00 2.32
341 345 1.757699 GAGCGTCTCCTCCCACTAAAT 59.242 52.381 0.00 0.00 0.00 1.40
342 346 1.183549 GAGCGTCTCCTCCCACTAAA 58.816 55.000 0.00 0.00 0.00 1.85
343 347 0.683504 GGAGCGTCTCCTCCCACTAA 60.684 60.000 15.90 0.00 46.41 2.24
344 348 1.076923 GGAGCGTCTCCTCCCACTA 60.077 63.158 15.90 0.00 46.41 2.74
345 349 2.363147 GGAGCGTCTCCTCCCACT 60.363 66.667 15.90 0.00 46.41 4.00
353 357 1.710339 GCGTTGATTGGAGCGTCTC 59.290 57.895 0.00 0.00 0.00 3.36
354 358 2.094659 CGCGTTGATTGGAGCGTCT 61.095 57.895 0.00 0.00 46.48 4.18
355 359 2.395690 CGCGTTGATTGGAGCGTC 59.604 61.111 0.00 0.00 46.48 5.19
358 362 1.741770 ACCTCGCGTTGATTGGAGC 60.742 57.895 5.77 0.00 0.00 4.70
359 363 1.970917 GCACCTCGCGTTGATTGGAG 61.971 60.000 5.77 0.00 0.00 3.86
360 364 2.032634 GCACCTCGCGTTGATTGGA 61.033 57.895 5.77 0.00 0.00 3.53
361 365 2.480555 GCACCTCGCGTTGATTGG 59.519 61.111 5.77 2.85 0.00 3.16
362 366 0.739462 TAGGCACCTCGCGTTGATTG 60.739 55.000 5.77 0.00 43.84 2.67
363 367 0.739813 GTAGGCACCTCGCGTTGATT 60.740 55.000 5.77 0.00 43.84 2.57
364 368 1.153628 GTAGGCACCTCGCGTTGAT 60.154 57.895 5.77 0.00 43.84 2.57
365 369 2.260434 GTAGGCACCTCGCGTTGA 59.740 61.111 5.77 0.00 43.84 3.18
366 370 3.179265 CGTAGGCACCTCGCGTTG 61.179 66.667 5.77 3.16 43.84 4.10
367 371 4.430765 CCGTAGGCACCTCGCGTT 62.431 66.667 5.77 0.00 46.14 4.84
377 381 7.382759 TTTGAAATTTACAAAATCACCGTAGGC 59.617 33.333 11.11 0.00 42.08 3.93
378 382 8.804688 TTTGAAATTTACAAAATCACCGTAGG 57.195 30.769 11.11 0.00 43.14 3.18
381 385 8.934507 TCTTTTGAAATTTACAAAATCACCGT 57.065 26.923 19.54 0.00 43.17 4.83
388 392 8.930760 CCGGCATATCTTTTGAAATTTACAAAA 58.069 29.630 18.77 18.77 42.37 2.44
389 393 7.064016 GCCGGCATATCTTTTGAAATTTACAAA 59.936 33.333 24.80 10.04 35.81 2.83
390 394 6.533367 GCCGGCATATCTTTTGAAATTTACAA 59.467 34.615 24.80 0.00 0.00 2.41
391 395 6.039616 GCCGGCATATCTTTTGAAATTTACA 58.960 36.000 24.80 0.00 0.00 2.41
392 396 6.273071 AGCCGGCATATCTTTTGAAATTTAC 58.727 36.000 31.54 0.00 0.00 2.01
393 397 6.096141 TGAGCCGGCATATCTTTTGAAATTTA 59.904 34.615 31.54 0.00 0.00 1.40
394 398 5.105392 TGAGCCGGCATATCTTTTGAAATTT 60.105 36.000 31.54 0.00 0.00 1.82
395 399 4.402155 TGAGCCGGCATATCTTTTGAAATT 59.598 37.500 31.54 0.06 0.00 1.82
396 400 3.953612 TGAGCCGGCATATCTTTTGAAAT 59.046 39.130 31.54 0.89 0.00 2.17
397 401 3.351740 TGAGCCGGCATATCTTTTGAAA 58.648 40.909 31.54 0.00 0.00 2.69
398 402 2.945008 CTGAGCCGGCATATCTTTTGAA 59.055 45.455 31.54 0.00 0.00 2.69
399 403 2.092968 ACTGAGCCGGCATATCTTTTGA 60.093 45.455 31.54 0.00 0.00 2.69
400 404 2.289002 GACTGAGCCGGCATATCTTTTG 59.711 50.000 31.54 11.43 0.00 2.44
401 405 2.171448 AGACTGAGCCGGCATATCTTTT 59.829 45.455 31.54 4.27 0.00 2.27
402 406 1.765314 AGACTGAGCCGGCATATCTTT 59.235 47.619 31.54 5.22 0.00 2.52
403 407 1.418334 AGACTGAGCCGGCATATCTT 58.582 50.000 31.54 6.18 0.00 2.40
404 408 1.418334 AAGACTGAGCCGGCATATCT 58.582 50.000 31.54 21.67 0.00 1.98
405 409 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
406 410 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
407 411 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
408 412 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
409 413 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
410 414 1.807573 CTCGAAAGACTGAGCCGGC 60.808 63.158 21.89 21.89 35.39 6.13
411 415 1.153745 CCTCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 35.39 6.13
412 416 0.734253 CACCTCGAAAGACTGAGCCG 60.734 60.000 0.00 0.00 35.39 5.52
413 417 1.016653 GCACCTCGAAAGACTGAGCC 61.017 60.000 0.00 0.00 35.39 4.70
414 418 0.037790 AGCACCTCGAAAGACTGAGC 60.038 55.000 0.00 0.00 35.39 4.26
415 419 1.270826 TGAGCACCTCGAAAGACTGAG 59.729 52.381 0.00 0.00 35.39 3.35
416 420 1.328279 TGAGCACCTCGAAAGACTGA 58.672 50.000 0.00 0.00 35.39 3.41
417 421 2.376808 ATGAGCACCTCGAAAGACTG 57.623 50.000 0.00 0.00 35.39 3.51
418 422 2.428890 CCTATGAGCACCTCGAAAGACT 59.571 50.000 0.00 0.00 35.39 3.24
419 423 2.482142 CCCTATGAGCACCTCGAAAGAC 60.482 54.545 0.00 0.00 35.39 3.01
420 424 1.757118 CCCTATGAGCACCTCGAAAGA 59.243 52.381 0.00 0.00 39.12 2.52
421 425 1.202580 CCCCTATGAGCACCTCGAAAG 60.203 57.143 0.00 0.00 32.35 2.62
422 426 0.830648 CCCCTATGAGCACCTCGAAA 59.169 55.000 0.00 0.00 32.35 3.46
423 427 0.325296 ACCCCTATGAGCACCTCGAA 60.325 55.000 0.00 0.00 32.35 3.71
424 428 0.554305 TACCCCTATGAGCACCTCGA 59.446 55.000 0.00 0.00 32.35 4.04
425 429 0.962489 CTACCCCTATGAGCACCTCG 59.038 60.000 0.00 0.00 32.35 4.63
426 430 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
427 431 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
428 432 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
429 433 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
430 434 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
431 435 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
432 436 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
433 437 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
434 438 1.445942 CGCACACCCTACCCCTATG 59.554 63.158 0.00 0.00 0.00 2.23
435 439 2.440817 GCGCACACCCTACCCCTAT 61.441 63.158 0.30 0.00 0.00 2.57
436 440 3.078836 GCGCACACCCTACCCCTA 61.079 66.667 0.30 0.00 0.00 3.53
440 444 3.285523 TACACGCGCACACCCTACC 62.286 63.158 5.73 0.00 0.00 3.18
441 445 2.090524 GTACACGCGCACACCCTAC 61.091 63.158 5.73 0.00 0.00 3.18
442 446 2.259204 GTACACGCGCACACCCTA 59.741 61.111 5.73 0.00 0.00 3.53
445 449 1.547292 TAAACGTACACGCGCACACC 61.547 55.000 5.73 0.00 44.43 4.16
446 450 0.435769 ATAAACGTACACGCGCACAC 59.564 50.000 5.73 0.00 44.43 3.82
447 451 1.912756 CTATAAACGTACACGCGCACA 59.087 47.619 5.73 0.00 44.43 4.57
448 452 1.253545 CCTATAAACGTACACGCGCAC 59.746 52.381 5.73 0.08 44.43 5.34
449 453 1.547909 CCTATAAACGTACACGCGCA 58.452 50.000 5.73 0.00 44.43 6.09
450 454 0.848305 CCCTATAAACGTACACGCGC 59.152 55.000 5.73 0.00 44.43 6.86
451 455 1.202290 ACCCCTATAAACGTACACGCG 60.202 52.381 3.53 3.53 44.43 6.01
452 456 2.159254 TCACCCCTATAAACGTACACGC 60.159 50.000 0.85 0.00 44.43 5.34
453 457 3.129287 ACTCACCCCTATAAACGTACACG 59.871 47.826 0.00 0.00 46.33 4.49
454 458 4.082026 ACACTCACCCCTATAAACGTACAC 60.082 45.833 0.00 0.00 0.00 2.90
455 459 4.088634 ACACTCACCCCTATAAACGTACA 58.911 43.478 0.00 0.00 0.00 2.90
456 460 4.725790 ACACTCACCCCTATAAACGTAC 57.274 45.455 0.00 0.00 0.00 3.67
457 461 5.221303 GCATACACTCACCCCTATAAACGTA 60.221 44.000 0.00 0.00 0.00 3.57
458 462 4.442472 GCATACACTCACCCCTATAAACGT 60.442 45.833 0.00 0.00 0.00 3.99
459 463 4.056050 GCATACACTCACCCCTATAAACG 58.944 47.826 0.00 0.00 0.00 3.60
460 464 4.814771 GTGCATACACTCACCCCTATAAAC 59.185 45.833 0.00 0.00 43.85 2.01
461 465 4.442332 CGTGCATACACTCACCCCTATAAA 60.442 45.833 0.00 0.00 45.10 1.40
462 466 3.069016 CGTGCATACACTCACCCCTATAA 59.931 47.826 0.00 0.00 45.10 0.98
463 467 2.626266 CGTGCATACACTCACCCCTATA 59.374 50.000 0.00 0.00 45.10 1.31
464 468 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
465 469 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
466 470 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
467 471 1.019278 CACGTGCATACACTCACCCC 61.019 60.000 0.82 0.00 45.10 4.95
468 472 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
469 473 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
470 474 5.278604 TCATATACACGTGCATACACTCAC 58.721 41.667 17.22 0.00 45.10 3.51
471 475 5.508200 TCATATACACGTGCATACACTCA 57.492 39.130 17.22 0.00 45.10 3.41
472 476 4.383052 GCTCATATACACGTGCATACACTC 59.617 45.833 17.22 0.27 45.10 3.51
473 477 4.299155 GCTCATATACACGTGCATACACT 58.701 43.478 17.22 0.00 45.10 3.55
474 478 3.119628 CGCTCATATACACGTGCATACAC 59.880 47.826 17.22 2.67 43.76 2.90
475 479 3.305110 CGCTCATATACACGTGCATACA 58.695 45.455 17.22 2.39 0.00 2.29
476 480 2.090658 GCGCTCATATACACGTGCATAC 59.909 50.000 17.22 0.00 33.41 2.39
477 481 2.030274 AGCGCTCATATACACGTGCATA 60.030 45.455 17.22 13.68 35.49 3.14
478 482 1.139989 GCGCTCATATACACGTGCAT 58.860 50.000 17.22 11.52 33.41 3.96
479 483 0.102300 AGCGCTCATATACACGTGCA 59.898 50.000 17.22 2.06 35.49 4.57
480 484 1.071239 CAAGCGCTCATATACACGTGC 60.071 52.381 17.22 0.00 0.00 5.34
481 485 2.034591 CACAAGCGCTCATATACACGTG 60.035 50.000 12.06 15.48 0.00 4.49
482 486 2.193447 CACAAGCGCTCATATACACGT 58.807 47.619 12.06 0.00 0.00 4.49
483 487 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
484 488 4.334443 CAAACACAAGCGCTCATATACAC 58.666 43.478 12.06 0.00 0.00 2.90
485 489 3.181511 GCAAACACAAGCGCTCATATACA 60.182 43.478 12.06 0.00 0.00 2.29
486 490 3.354397 GCAAACACAAGCGCTCATATAC 58.646 45.455 12.06 0.00 0.00 1.47
487 491 3.673746 GCAAACACAAGCGCTCATATA 57.326 42.857 12.06 0.00 0.00 0.86
488 492 2.549633 GCAAACACAAGCGCTCATAT 57.450 45.000 12.06 0.00 0.00 1.78
490 494 4.950744 GCAAACACAAGCGCTCAT 57.049 50.000 12.06 0.00 0.00 2.90
496 500 1.064952 AGTACCAACGCAAACACAAGC 59.935 47.619 0.00 0.00 0.00 4.01
497 501 2.096819 ACAGTACCAACGCAAACACAAG 59.903 45.455 0.00 0.00 0.00 3.16
498 502 2.085320 ACAGTACCAACGCAAACACAA 58.915 42.857 0.00 0.00 0.00 3.33
499 503 1.398739 CACAGTACCAACGCAAACACA 59.601 47.619 0.00 0.00 0.00 3.72
500 504 1.399089 ACACAGTACCAACGCAAACAC 59.601 47.619 0.00 0.00 0.00 3.32
501 505 1.740297 ACACAGTACCAACGCAAACA 58.260 45.000 0.00 0.00 0.00 2.83
502 506 2.836479 AACACAGTACCAACGCAAAC 57.164 45.000 0.00 0.00 0.00 2.93
503 507 4.959596 TTTAACACAGTACCAACGCAAA 57.040 36.364 0.00 0.00 0.00 3.68
504 508 4.959596 TTTTAACACAGTACCAACGCAA 57.040 36.364 0.00 0.00 0.00 4.85
505 509 4.959596 TTTTTAACACAGTACCAACGCA 57.040 36.364 0.00 0.00 0.00 5.24
524 528 9.902196 GAGCAATTCAATGGAAAAATGATTTTT 57.098 25.926 15.10 15.10 44.93 1.94
525 529 9.069082 TGAGCAATTCAATGGAAAAATGATTTT 57.931 25.926 0.00 0.00 35.68 1.82
526 530 8.624367 TGAGCAATTCAATGGAAAAATGATTT 57.376 26.923 0.00 0.00 36.43 2.17
527 531 8.801882 ATGAGCAATTCAATGGAAAAATGATT 57.198 26.923 0.00 0.00 39.77 2.57
528 532 8.801882 AATGAGCAATTCAATGGAAAAATGAT 57.198 26.923 0.00 0.00 39.77 2.45
529 533 8.624367 AAATGAGCAATTCAATGGAAAAATGA 57.376 26.923 0.00 0.00 39.77 2.57
530 534 8.726988 AGAAATGAGCAATTCAATGGAAAAATG 58.273 29.630 1.60 0.00 39.77 2.32
531 535 8.857694 AGAAATGAGCAATTCAATGGAAAAAT 57.142 26.923 1.60 0.00 39.77 1.82
532 536 8.680039 AAGAAATGAGCAATTCAATGGAAAAA 57.320 26.923 1.60 0.00 39.77 1.94
533 537 8.680039 AAAGAAATGAGCAATTCAATGGAAAA 57.320 26.923 1.60 0.00 39.77 2.29
534 538 8.680039 AAAAGAAATGAGCAATTCAATGGAAA 57.320 26.923 1.60 0.00 39.77 3.13
535 539 8.680039 AAAAAGAAATGAGCAATTCAATGGAA 57.320 26.923 1.60 0.00 39.77 3.53
571 575 0.446616 GAACGGATTGGAACTTCGGC 59.553 55.000 0.00 0.00 0.00 5.54
595 608 2.341318 TGTACGCCGATCAATATCCG 57.659 50.000 0.00 0.00 0.00 4.18
609 622 3.869246 AGATGCCGGTTAAAAGATGTACG 59.131 43.478 1.90 0.00 0.00 3.67
728 743 1.410153 AGTCGGTGGAGTTGTTTACGT 59.590 47.619 0.00 0.00 0.00 3.57
730 745 2.224113 TGGAGTCGGTGGAGTTGTTTAC 60.224 50.000 0.00 0.00 0.00 2.01
731 746 2.040939 TGGAGTCGGTGGAGTTGTTTA 58.959 47.619 0.00 0.00 0.00 2.01
733 748 1.056660 ATGGAGTCGGTGGAGTTGTT 58.943 50.000 0.00 0.00 0.00 2.83
734 749 0.321671 CATGGAGTCGGTGGAGTTGT 59.678 55.000 0.00 0.00 0.00 3.32
737 752 2.660064 GCCATGGAGTCGGTGGAGT 61.660 63.158 18.40 0.00 34.94 3.85
738 753 2.187946 GCCATGGAGTCGGTGGAG 59.812 66.667 18.40 0.00 34.94 3.86
739 754 2.284625 AGCCATGGAGTCGGTGGA 60.285 61.111 18.40 0.00 34.94 4.02
741 756 1.976132 ATGGAGCCATGGAGTCGGTG 61.976 60.000 18.40 0.00 35.03 4.94
742 757 1.690633 ATGGAGCCATGGAGTCGGT 60.691 57.895 18.40 0.33 35.03 4.69
743 758 3.234349 ATGGAGCCATGGAGTCGG 58.766 61.111 18.40 0.00 35.03 4.79
751 766 1.337384 TACGTGAGCCATGGAGCCAT 61.337 55.000 18.40 0.00 37.08 4.40
753 768 0.392461 TTTACGTGAGCCATGGAGCC 60.392 55.000 18.40 3.53 0.00 4.70
754 769 0.727398 GTTTACGTGAGCCATGGAGC 59.273 55.000 18.40 6.63 0.00 4.70
756 771 1.609580 GGTGTTTACGTGAGCCATGGA 60.610 52.381 18.40 0.00 0.00 3.41
757 772 0.802494 GGTGTTTACGTGAGCCATGG 59.198 55.000 7.63 7.63 0.00 3.66
758 773 1.196808 GTGGTGTTTACGTGAGCCATG 59.803 52.381 0.00 0.00 0.00 3.66
759 774 1.519408 GTGGTGTTTACGTGAGCCAT 58.481 50.000 0.00 0.00 0.00 4.40
760 775 0.533308 GGTGGTGTTTACGTGAGCCA 60.533 55.000 0.00 0.00 0.00 4.75
761 776 1.562575 CGGTGGTGTTTACGTGAGCC 61.563 60.000 0.00 0.00 0.00 4.70
762 777 0.598158 TCGGTGGTGTTTACGTGAGC 60.598 55.000 0.00 0.00 0.00 4.26
763 778 1.134226 GTCGGTGGTGTTTACGTGAG 58.866 55.000 0.00 0.00 0.00 3.51
764 779 0.746063 AGTCGGTGGTGTTTACGTGA 59.254 50.000 0.00 0.00 0.00 4.35
765 780 1.134226 GAGTCGGTGGTGTTTACGTG 58.866 55.000 0.00 0.00 0.00 4.49
766 781 0.032540 GGAGTCGGTGGTGTTTACGT 59.967 55.000 0.00 0.00 0.00 3.57
767 782 0.032403 TGGAGTCGGTGGTGTTTACG 59.968 55.000 0.00 0.00 0.00 3.18
768 783 2.073816 CATGGAGTCGGTGGTGTTTAC 58.926 52.381 0.00 0.00 0.00 2.01
769 784 1.002659 CCATGGAGTCGGTGGTGTTTA 59.997 52.381 5.56 0.00 0.00 2.01
868 886 6.835819 TGTATATATAGAGGTGTGGCTGAC 57.164 41.667 0.00 0.00 0.00 3.51
900 918 3.876589 TTCTTGGAGCGTGCCGGAC 62.877 63.158 5.05 0.00 0.00 4.79
936 954 4.798344 CAGAGCTGCCTGGGCTGG 62.798 72.222 17.73 9.82 40.40 4.85
1008 1041 2.429930 CCGTGAAGGCCAAGGTGA 59.570 61.111 5.01 0.00 39.23 4.02
1538 1574 4.927978 TTCGCAAGGAAAGAAAATCCAA 57.072 36.364 0.00 0.00 39.55 3.53
1593 1634 2.224621 ACACACAGGTCCCAAGAGAATG 60.225 50.000 0.00 0.00 0.00 2.67
1607 1648 4.988540 TCGATAAAACAGAGGAACACACAG 59.011 41.667 0.00 0.00 0.00 3.66
1621 1662 8.903723 CGTACATAAGGAGATTCTCGATAAAAC 58.096 37.037 7.57 0.86 0.00 2.43
1689 1737 1.268794 TGAATCGTGCGGTTTGGTTTG 60.269 47.619 0.00 0.00 0.00 2.93
1690 1738 1.025812 TGAATCGTGCGGTTTGGTTT 58.974 45.000 0.00 0.00 0.00 3.27
1691 1739 1.025812 TTGAATCGTGCGGTTTGGTT 58.974 45.000 0.00 0.00 0.00 3.67
1692 1740 1.025812 TTTGAATCGTGCGGTTTGGT 58.974 45.000 0.00 0.00 0.00 3.67
1693 1741 2.126914 TTTTGAATCGTGCGGTTTGG 57.873 45.000 0.00 0.00 0.00 3.28
1694 1742 3.564511 AGATTTTGAATCGTGCGGTTTG 58.435 40.909 0.00 0.00 0.00 2.93
1695 1743 3.915437 AGATTTTGAATCGTGCGGTTT 57.085 38.095 0.00 0.00 0.00 3.27
1696 1744 5.560966 AATAGATTTTGAATCGTGCGGTT 57.439 34.783 0.00 0.00 0.00 4.44
1697 1745 5.123186 TGAAATAGATTTTGAATCGTGCGGT 59.877 36.000 0.00 0.00 0.00 5.68
1698 1746 5.568482 TGAAATAGATTTTGAATCGTGCGG 58.432 37.500 0.00 0.00 0.00 5.69
1699 1747 6.522855 TGTTGAAATAGATTTTGAATCGTGCG 59.477 34.615 0.00 0.00 0.00 5.34
1700 1748 7.538678 ACTGTTGAAATAGATTTTGAATCGTGC 59.461 33.333 0.00 0.00 0.00 5.34
1701 1749 8.955061 ACTGTTGAAATAGATTTTGAATCGTG 57.045 30.769 0.00 0.00 0.00 4.35
1702 1750 9.398170 CAACTGTTGAAATAGATTTTGAATCGT 57.602 29.630 15.26 0.00 0.00 3.73
1703 1751 9.398170 ACAACTGTTGAAATAGATTTTGAATCG 57.602 29.630 26.00 0.00 0.00 3.34
1705 1753 9.696917 GGACAACTGTTGAAATAGATTTTGAAT 57.303 29.630 26.00 0.00 0.00 2.57
1706 1754 7.860373 CGGACAACTGTTGAAATAGATTTTGAA 59.140 33.333 26.00 0.00 0.00 2.69
1707 1755 7.012894 ACGGACAACTGTTGAAATAGATTTTGA 59.987 33.333 26.00 0.00 30.63 2.69
1708 1756 7.138736 ACGGACAACTGTTGAAATAGATTTTG 58.861 34.615 26.00 0.00 30.63 2.44
1709 1757 7.272037 ACGGACAACTGTTGAAATAGATTTT 57.728 32.000 26.00 0.10 30.63 1.82
1710 1758 6.072673 GGACGGACAACTGTTGAAATAGATTT 60.073 38.462 26.00 0.85 35.56 2.17
1711 1759 5.411669 GGACGGACAACTGTTGAAATAGATT 59.588 40.000 26.00 1.60 35.56 2.40
1712 1760 4.935808 GGACGGACAACTGTTGAAATAGAT 59.064 41.667 26.00 2.36 35.56 1.98
1713 1761 4.039973 AGGACGGACAACTGTTGAAATAGA 59.960 41.667 26.00 0.00 35.56 1.98
1714 1762 4.315803 AGGACGGACAACTGTTGAAATAG 58.684 43.478 26.00 13.92 35.56 1.73
1715 1763 4.312443 GAGGACGGACAACTGTTGAAATA 58.688 43.478 26.00 0.00 35.56 1.40
1716 1764 3.139077 GAGGACGGACAACTGTTGAAAT 58.861 45.455 26.00 4.65 35.56 2.17
1717 1765 2.557317 GAGGACGGACAACTGTTGAAA 58.443 47.619 26.00 0.00 35.56 2.69
1718 1766 1.537348 CGAGGACGGACAACTGTTGAA 60.537 52.381 26.00 0.00 35.56 2.69
1719 1767 0.031585 CGAGGACGGACAACTGTTGA 59.968 55.000 26.00 0.00 35.56 3.18
1720 1768 0.249322 ACGAGGACGGACAACTGTTG 60.249 55.000 18.44 18.44 44.46 3.33
1721 1769 0.031721 GACGAGGACGGACAACTGTT 59.968 55.000 0.00 0.00 44.46 3.16
1722 1770 1.105167 TGACGAGGACGGACAACTGT 61.105 55.000 0.00 0.00 44.46 3.55
1723 1771 0.243907 ATGACGAGGACGGACAACTG 59.756 55.000 0.00 0.00 44.46 3.16
1724 1772 0.966920 AATGACGAGGACGGACAACT 59.033 50.000 0.00 0.00 44.46 3.16
1725 1773 1.725164 GAAATGACGAGGACGGACAAC 59.275 52.381 0.00 0.00 44.46 3.32
1726 1774 1.616865 AGAAATGACGAGGACGGACAA 59.383 47.619 0.00 0.00 44.46 3.18
1727 1775 1.254026 AGAAATGACGAGGACGGACA 58.746 50.000 0.00 0.00 44.46 4.02
1728 1776 2.260481 GAAGAAATGACGAGGACGGAC 58.740 52.381 0.00 0.00 44.46 4.79
1729 1777 1.135489 CGAAGAAATGACGAGGACGGA 60.135 52.381 0.00 0.00 44.46 4.69
1730 1778 1.135489 TCGAAGAAATGACGAGGACGG 60.135 52.381 0.00 0.00 44.46 4.79
1731 1779 2.257974 TCGAAGAAATGACGAGGACG 57.742 50.000 0.00 0.00 45.75 4.79
1732 1780 3.121445 GTGTTCGAAGAAATGACGAGGAC 59.879 47.826 0.00 0.00 45.90 3.85
1733 1781 3.314553 GTGTTCGAAGAAATGACGAGGA 58.685 45.455 0.00 0.00 45.90 3.71
1734 1782 2.090658 CGTGTTCGAAGAAATGACGAGG 59.909 50.000 0.00 0.00 45.90 4.63
1735 1783 2.724690 ACGTGTTCGAAGAAATGACGAG 59.275 45.455 0.00 0.00 45.90 4.18
1736 1784 2.734670 ACGTGTTCGAAGAAATGACGA 58.265 42.857 0.00 0.00 45.90 4.20
1737 1785 3.479866 GCTACGTGTTCGAAGAAATGACG 60.480 47.826 0.00 0.00 45.90 4.35
1738 1786 3.427528 TGCTACGTGTTCGAAGAAATGAC 59.572 43.478 0.00 0.00 45.90 3.06
1739 1787 3.644823 TGCTACGTGTTCGAAGAAATGA 58.355 40.909 0.00 0.00 45.90 2.57
1740 1788 3.181530 CCTGCTACGTGTTCGAAGAAATG 60.182 47.826 0.00 0.00 45.90 2.32
1741 1789 2.993899 CCTGCTACGTGTTCGAAGAAAT 59.006 45.455 0.00 0.00 45.90 2.17
1742 1790 2.400399 CCTGCTACGTGTTCGAAGAAA 58.600 47.619 0.00 0.00 45.90 2.52
1743 1791 1.933500 GCCTGCTACGTGTTCGAAGAA 60.934 52.381 0.00 0.00 45.90 2.52
1744 1792 0.388134 GCCTGCTACGTGTTCGAAGA 60.388 55.000 0.00 0.00 40.62 2.87
1745 1793 0.666274 TGCCTGCTACGTGTTCGAAG 60.666 55.000 0.00 0.00 40.62 3.79
1746 1794 0.037697 ATGCCTGCTACGTGTTCGAA 60.038 50.000 0.00 0.00 40.62 3.71
1747 1795 0.812549 TATGCCTGCTACGTGTTCGA 59.187 50.000 0.00 0.00 40.62 3.71
1748 1796 1.200483 CTATGCCTGCTACGTGTTCG 58.800 55.000 0.00 0.00 43.34 3.95
1749 1797 0.931005 GCTATGCCTGCTACGTGTTC 59.069 55.000 0.00 0.00 0.00 3.18
1750 1798 0.806102 CGCTATGCCTGCTACGTGTT 60.806 55.000 0.00 0.00 0.00 3.32
1751 1799 1.226974 CGCTATGCCTGCTACGTGT 60.227 57.895 0.00 0.00 0.00 4.49
1752 1800 0.527600 TTCGCTATGCCTGCTACGTG 60.528 55.000 0.00 0.00 0.00 4.49
1753 1801 0.527817 GTTCGCTATGCCTGCTACGT 60.528 55.000 0.00 0.00 0.00 3.57
1754 1802 0.249073 AGTTCGCTATGCCTGCTACG 60.249 55.000 0.00 0.00 0.00 3.51
1755 1803 1.492720 GAGTTCGCTATGCCTGCTAC 58.507 55.000 0.00 0.00 0.00 3.58
1756 1804 0.030773 CGAGTTCGCTATGCCTGCTA 59.969 55.000 0.00 0.00 0.00 3.49
1757 1805 1.227089 CGAGTTCGCTATGCCTGCT 60.227 57.895 0.00 0.00 0.00 4.24
1758 1806 3.313750 CGAGTTCGCTATGCCTGC 58.686 61.111 0.00 0.00 0.00 4.85
1779 1827 2.743928 GAGCAGGAGTGGTTGCGG 60.744 66.667 0.00 0.00 44.80 5.69
1780 1828 1.376424 ATGAGCAGGAGTGGTTGCG 60.376 57.895 0.00 0.00 44.80 4.85
1781 1829 1.930908 GCATGAGCAGGAGTGGTTGC 61.931 60.000 0.00 0.00 41.58 4.17
1782 1830 2.177950 GCATGAGCAGGAGTGGTTG 58.822 57.895 0.00 0.00 41.58 3.77
1783 1831 4.730487 GCATGAGCAGGAGTGGTT 57.270 55.556 0.00 0.00 41.58 3.67
1794 1842 4.827087 AGCGAGGGCGTGCATGAG 62.827 66.667 10.93 0.00 46.35 2.90
1795 1843 4.819761 GAGCGAGGGCGTGCATGA 62.820 66.667 10.93 0.00 46.35 3.07
1800 1848 4.803426 GACAGGAGCGAGGGCGTG 62.803 72.222 0.00 0.00 46.35 5.34
1810 1858 4.498520 ATGCGGTCGCGACAGGAG 62.499 66.667 37.26 25.36 45.51 3.69
1811 1859 4.794439 CATGCGGTCGCGACAGGA 62.794 66.667 37.26 34.60 45.51 3.86
1890 1938 4.308458 TTGGGTGGACGAGGCGTG 62.308 66.667 0.00 0.00 41.37 5.34
1891 1939 4.003788 CTTGGGTGGACGAGGCGT 62.004 66.667 0.00 0.00 45.10 5.68
1893 1941 3.959991 GAGCTTGGGTGGACGAGGC 62.960 68.421 0.00 0.00 0.00 4.70
1894 1942 2.232298 GAGAGCTTGGGTGGACGAGG 62.232 65.000 0.00 0.00 0.00 4.63
1895 1943 1.216710 GAGAGCTTGGGTGGACGAG 59.783 63.158 0.00 0.00 0.00 4.18
1896 1944 2.283529 GGAGAGCTTGGGTGGACGA 61.284 63.158 0.00 0.00 0.00 4.20
1897 1945 2.266055 GGAGAGCTTGGGTGGACG 59.734 66.667 0.00 0.00 0.00 4.79
1898 1946 2.266055 CGGAGAGCTTGGGTGGAC 59.734 66.667 0.00 0.00 0.00 4.02
1899 1947 3.706373 GCGGAGAGCTTGGGTGGA 61.706 66.667 0.00 0.00 44.04 4.02
2383 2431 4.767255 CTCCCACTCCCTGTGCGC 62.767 72.222 0.00 0.00 44.92 6.09
2384 2432 4.087892 CCTCCCACTCCCTGTGCG 62.088 72.222 0.00 0.00 44.92 5.34
2385 2433 4.416738 GCCTCCCACTCCCTGTGC 62.417 72.222 0.00 0.00 44.92 4.57
2386 2434 4.087892 CGCCTCCCACTCCCTGTG 62.088 72.222 0.00 0.00 45.80 3.66
2389 2437 4.787280 CTCCGCCTCCCACTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
2392 2440 4.154347 CAGCTCCGCCTCCCACTC 62.154 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.