AutoCloner

Multiple sequence alignment - TraesCS6D01G169700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G169700	chr6D	100.000	2630	0	0	1	2630	156430242	156427613	0.000000e+00	4857.0
1	TraesCS6D01G169700	chr6D	87.611	678	43	10	1	645	418458670	418459339	0.000000e+00	749.0
2	TraesCS6D01G169700	chr6B	95.037	947	38	3	1690	2630	279007625	279006682	0.000000e+00	1480.0
3	TraesCS6D01G169700	chr6B	93.559	885	47	8	673	1554	279008976	279008099	0.000000e+00	1310.0
4	TraesCS6D01G169700	chr6B	91.228	399	30	5	1	397	630483774	630484169	2.980000e-149	538.0
5	TraesCS6D01G169700	chr6B	81.405	242	23	2	426	645	630503151	630503392	7.480000e-41	178.0
6	TraesCS6D01G169700	chr6B	92.308	65	5	0	571	635	134489346	134489282	2.790000e-15	93.5
7	TraesCS6D01G169700	chr6B	90.769	65	6	0	571	635	134489213	134489149	1.300000e-13	87.9
8	TraesCS6D01G169700	chr6A	94.944	890	29	8	673	1554	209783540	209782659	0.000000e+00	1380.0
9	TraesCS6D01G169700	chr6A	90.809	729	46	11	1731	2448	209766972	209766254	0.000000e+00	955.0
10	TraesCS6D01G169700	chr6A	81.217	575	79	20	2	556	101799245	101799810	1.120000e-118	436.0
11	TraesCS6D01G169700	chr2D	82.153	678	74	21	2	641	102865038	102864370	2.980000e-149	538.0
12	TraesCS6D01G169700	chr2D	78.212	179	18	16	338	499	625589597	625589771	7.750000e-16	95.3
13	TraesCS6D01G169700	chr3A	84.405	513	61	9	4	499	653329597	653329087	1.090000e-133	486.0
14	TraesCS6D01G169700	chr3A	78.655	684	90	26	5	647	96228753	96228085	1.130000e-108	403.0
15	TraesCS6D01G169700	chr3A	78.176	669	89	26	10	645	121406083	121405439	8.890000e-100	374.0
16	TraesCS6D01G169700	chr3A	76.226	673	91	38	4	635	701240824	701240180	2.560000e-75	292.0
17	TraesCS6D01G169700	chr5B	81.784	538	76	16	2	525	133900072	133900601	5.200000e-117	431.0
18	TraesCS6D01G169700	chr3D	78.917	683	98	26	3	644	165592007	165592684	3.130000e-114	422.0
19	TraesCS6D01G169700	chr7A	78.466	678	109	18	2	646	634448231	634447558	2.440000e-110	409.0
20	TraesCS6D01G169700	chrUn	84.518	394	53	6	2	388	24453090	24453482	1.480000e-102	383.0
21	TraesCS6D01G169700	chrUn	77.843	677	90	25	2	624	420456093	420456763	5.350000e-97	364.0
22	TraesCS6D01G169700	chr1B	81.263	491	73	11	2	485	60200514	60200992	1.910000e-101	379.0
23	TraesCS6D01G169700	chr1B	78.884	502	73	15	2	489	462791106	462791588	2.540000e-80	309.0
24	TraesCS6D01G169700	chr7B	76.694	369	49	16	313	645	582660785	582661152	1.250000e-38	171.0
25	TraesCS6D01G169700	chr4A	90.476	84	4	3	417	499	604661206	604661126	9.950000e-20	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G169700	chr6D	156427613	156430242	2629	True	4857	4857	100.000	1	2630	1	chr6D.!!$R1	2629
1	TraesCS6D01G169700	chr6D	418458670	418459339	669	False	749	749	87.611	1	645	1	chr6D.!!$F1	644
2	TraesCS6D01G169700	chr6B	279006682	279008976	2294	True	1395	1480	94.298	673	2630	2	chr6B.!!$R2	1957
3	TraesCS6D01G169700	chr6A	209782659	209783540	881	True	1380	1380	94.944	673	1554	1	chr6A.!!$R2	881
4	TraesCS6D01G169700	chr6A	209766254	209766972	718	True	955	955	90.809	1731	2448	1	chr6A.!!$R1	717
5	TraesCS6D01G169700	chr6A	101799245	101799810	565	False	436	436	81.217	2	556	1	chr6A.!!$F1	554
6	TraesCS6D01G169700	chr2D	102864370	102865038	668	True	538	538	82.153	2	641	1	chr2D.!!$R1	639
7	TraesCS6D01G169700	chr3A	653329087	653329597	510	True	486	486	84.405	4	499	1	chr3A.!!$R3	495
8	TraesCS6D01G169700	chr3A	96228085	96228753	668	True	403	403	78.655	5	647	1	chr3A.!!$R1	642
9	TraesCS6D01G169700	chr3A	121405439	121406083	644	True	374	374	78.176	10	645	1	chr3A.!!$R2	635
10	TraesCS6D01G169700	chr3A	701240180	701240824	644	True	292	292	76.226	4	635	1	chr3A.!!$R4	631
11	TraesCS6D01G169700	chr5B	133900072	133900601	529	False	431	431	81.784	2	525	1	chr5B.!!$F1	523
12	TraesCS6D01G169700	chr3D	165592007	165592684	677	False	422	422	78.917	3	644	1	chr3D.!!$F1	641
13	TraesCS6D01G169700	chr7A	634447558	634448231	673	True	409	409	78.466	2	646	1	chr7A.!!$R1	644
14	TraesCS6D01G169700	chrUn	420456093	420456763	670	False	364	364	77.843	2	624	1	chrUn.!!$F2	622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
703	788	1.531149	CGTGACTTTCATTTGCCGACT	59.469	47.619	0.0	0.0	0.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2274	2727	0.04109	CCATAGCCCCCACCACTTTT	59.959	55.0	0.0	0.0	0.0	2.27	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	137	7.556275	GGGAGATGATGGAGTGTGTTTTATTTA	59.444	37.037	0.00	0.00	0.00	1.40
271	311	3.937814	TGATGGCGCTTCTTTTTCTAGA	58.062	40.909	7.64	0.00	0.00	2.43
457	515	6.015434	AGCTTTTTGAGAAATTATTGACCCGT	60.015	34.615	0.00	0.00	0.00	5.28
610	694	5.573219	TGAAGACCTCAATTGAATGTGGAT	58.427	37.500	16.18	4.04	37.39	3.41
614	698	5.884792	AGACCTCAATTGAATGTGGATTCTC	59.115	40.000	16.18	5.43	39.10	2.87
635	719	7.575414	TCTCTAAAACTAGAGAGCATAGTGG	57.425	40.000	7.61	0.00	45.38	4.00
647	732	6.786959	AGAGAGCATAGTGGATAGAGGATTTT	59.213	38.462	0.00	0.00	0.00	1.82
648	733	7.003402	AGAGCATAGTGGATAGAGGATTTTC	57.997	40.000	0.00	0.00	0.00	2.29
649	734	6.013812	AGAGCATAGTGGATAGAGGATTTTCC	60.014	42.308	0.00	0.00	36.58	3.13
662	747	5.511386	AGGATTTTCCTTCATCTCTGTGT	57.489	39.130	0.00	0.00	46.91	3.72
663	748	5.885465	AGGATTTTCCTTCATCTCTGTGTT	58.115	37.500	0.00	0.00	46.91	3.32
664	749	5.709164	AGGATTTTCCTTCATCTCTGTGTTG	59.291	40.000	0.00	0.00	46.91	3.33
665	750	5.707298	GGATTTTCCTTCATCTCTGTGTTGA	59.293	40.000	0.00	0.00	32.53	3.18
666	751	6.128063	GGATTTTCCTTCATCTCTGTGTTGAG	60.128	42.308	0.00	0.00	32.53	3.02
667	752	5.551305	TTTCCTTCATCTCTGTGTTGAGA	57.449	39.130	0.00	0.00	45.71	3.27
668	753	4.797800	TCCTTCATCTCTGTGTTGAGAG	57.202	45.455	0.00	0.00	44.98	3.20
669	754	3.056250	TCCTTCATCTCTGTGTTGAGAGC	60.056	47.826	0.00	0.00	44.98	4.09
670	755	3.306571	CCTTCATCTCTGTGTTGAGAGCA	60.307	47.826	0.00	0.00	44.98	4.26
671	756	4.313282	CTTCATCTCTGTGTTGAGAGCAA	58.687	43.478	0.00	0.00	44.98	3.91
682	767	3.627577	TGTTGAGAGCAAAAGGTCAGAAC	59.372	43.478	0.00	0.00	35.42	3.01
703	788	1.531149	CGTGACTTTCATTTGCCGACT	59.469	47.619	0.00	0.00	0.00	4.18
857	942	2.164219	GCACACAATGGACAATACAGGG	59.836	50.000	0.00	0.00	0.00	4.45
903	988	2.125106	GCCAACTACCTCCAGCGG	60.125	66.667	0.00	0.00	0.00	5.52
904	989	2.125106	CCAACTACCTCCAGCGGC	60.125	66.667	0.00	0.00	0.00	6.53
905	990	2.509336	CAACTACCTCCAGCGGCG	60.509	66.667	0.51	0.51	0.00	6.46
906	991	4.452733	AACTACCTCCAGCGGCGC	62.453	66.667	26.86	26.86	0.00	6.53
1008	1096	5.107607	CCATCGAACCAACGTGCTATATAAC	60.108	44.000	0.00	0.00	34.70	1.89
1067	1157	2.646175	CCGGCGTCCTTCCTTCAGA	61.646	63.158	6.01	0.00	0.00	3.27
1075	1165	3.655810	CTTCCTTCAGAGCGCCGCT	62.656	63.158	13.40	13.40	43.88	5.52
1245	1335	1.209275	CCAGGCGCGTAGAAAGATCG	61.209	60.000	8.43	0.00	0.00	3.69
1278	1374	2.983592	GTGGGAAGGTTGGGCACG	60.984	66.667	0.00	0.00	0.00	5.34
1568	1697	2.350772	GCATTTGAGGAGTTTGTGGACG	60.351	50.000	0.00	0.00	0.00	4.79
1575	1704	2.135933	GGAGTTTGTGGACGTGAGAAG	58.864	52.381	0.00	0.00	0.00	2.85
1600	1729	1.404035	CACGTCATCGACTCATGGGTA	59.596	52.381	0.00	0.00	40.62	3.69
1617	1746	2.888414	GGGTATAGCTCAGACTGGTCTC	59.112	54.545	1.81	0.00	37.98	3.36
1618	1747	3.435890	GGGTATAGCTCAGACTGGTCTCT	60.436	52.174	1.81	0.00	37.98	3.10
1619	1748	4.202482	GGGTATAGCTCAGACTGGTCTCTA	60.202	50.000	1.81	0.99	37.98	2.43
1620	1749	5.515886	GGGTATAGCTCAGACTGGTCTCTAT	60.516	48.000	1.81	7.68	37.98	1.98
1621	1750	5.646360	GGTATAGCTCAGACTGGTCTCTATC	59.354	48.000	1.81	0.00	37.98	2.08
1624	1753	4.609301	AGCTCAGACTGGTCTCTATCTTT	58.391	43.478	1.81	0.00	37.98	2.52
1625	1754	5.022787	AGCTCAGACTGGTCTCTATCTTTT	58.977	41.667	1.81	0.00	37.98	2.27
1626	1755	5.483583	AGCTCAGACTGGTCTCTATCTTTTT	59.516	40.000	1.81	0.00	37.98	1.94
1658	1787	7.459394	AAAAGAATACCATCATACGTACACG	57.541	36.000	0.00	0.00	46.33	4.49
1677	1806	9.144747	CGTACACGTACTAGTATTATCTACCAT	57.855	37.037	5.75	0.00	34.04	3.55
1680	1809	9.347240	ACACGTACTAGTATTATCTACCATGTT	57.653	33.333	5.75	0.00	0.00	2.71
1681	1810	9.823098	CACGTACTAGTATTATCTACCATGTTC	57.177	37.037	5.75	0.00	0.00	3.18
1682	1811	9.790344	ACGTACTAGTATTATCTACCATGTTCT	57.210	33.333	5.75	0.00	0.00	3.01
1686	1815	9.080097	ACTAGTATTATCTACCATGTTCTGACC	57.920	37.037	0.00	0.00	0.00	4.02
1687	1816	9.303116	CTAGTATTATCTACCATGTTCTGACCT	57.697	37.037	0.00	0.00	0.00	3.85
1688	1817	8.184304	AGTATTATCTACCATGTTCTGACCTC	57.816	38.462	0.00	0.00	0.00	3.85
1729	2172	4.724602	GAGACGTGCTGCCTCGCA	62.725	66.667	12.68	0.00	37.62	5.10
1810	2253	3.378427	GTGTTGCCTCAGAAAAGTTGACT	59.622	43.478	0.00	0.00	0.00	3.41
1811	2254	4.574828	GTGTTGCCTCAGAAAAGTTGACTA	59.425	41.667	0.00	0.00	0.00	2.59
1967	2420	2.029918	CGCCATGGATTCGATCTAGTCA	60.030	50.000	18.40	0.00	0.00	3.41
1983	2436	1.103803	GTCAGAGCCGAGGTACATCA	58.896	55.000	8.44	0.00	0.00	3.07
1986	2439	0.390860	AGAGCCGAGGTACATCATGC	59.609	55.000	8.44	9.40	0.00	4.06
2004	2457	2.870175	TGCCTGGATTTCGGAGAAAAA	58.130	42.857	0.00	0.00	45.90	1.94
2043	2496	2.057922	TCCAGGAGAAGGAGCAAAGTT	58.942	47.619	0.00	0.00	0.00	2.66
2190	2643	3.114616	CGGAGTTGTCGGCTGCAG	61.115	66.667	10.11	10.11	0.00	4.41
2383	2836	1.038130	AGACCGAGGGGAACGAGATG	61.038	60.000	0.00	0.00	36.97	2.90
2475	2928	0.839946	ATGTGTGGTAGCCTCATCCC	59.160	55.000	0.00	0.00	29.60	3.85
2486	2939	2.091994	AGCCTCATCCCTTTGATTCCTG	60.092	50.000	0.00	0.00	0.00	3.86
2540	2993	1.212688	CCCATAGTTCATGCCCTCACA	59.787	52.381	0.00	0.00	32.84	3.58
2541	2994	2.569059	CCATAGTTCATGCCCTCACAG	58.431	52.381	0.00	0.00	32.84	3.66
2576	3029	2.653953	TTAGCCGTGATTAGCGCCCC	62.654	60.000	2.29	0.00	0.00	5.80
2584	3037	0.380733	GATTAGCGCCCCCGAAAAAG	59.619	55.000	2.29	0.00	36.29	2.27
2596	3049	2.808543	CCCGAAAAAGGACAAGTCAGAG	59.191	50.000	2.29	0.00	0.00	3.35
2599	3052	2.278332	AAAAGGACAAGTCAGAGCCC	57.722	50.000	2.29	0.00	0.00	5.19

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
143	163	3.766591	ACAGAACCACACCACAAAAATCA	59.233	39.130	0.00	0.00	0.00	2.57
293	333	4.206200	GCAACCGGCAATAAAAATACATCG	59.794	41.667	0.00	0.00	43.97	3.84
614	698	9.290988	TCTATCCACTATGCTCTCTAGTTTTAG	57.709	37.037	0.00	0.00	0.00	1.85
647	732	3.056250	GCTCTCAACACAGAGATGAAGGA	60.056	47.826	1.53	0.00	43.27	3.36
648	733	3.260740	GCTCTCAACACAGAGATGAAGG	58.739	50.000	1.53	0.00	43.27	3.46
649	734	3.922910	TGCTCTCAACACAGAGATGAAG	58.077	45.455	1.53	0.00	43.27	3.02
650	735	4.341366	TTGCTCTCAACACAGAGATGAA	57.659	40.909	1.53	0.00	43.27	2.57
651	736	4.341366	TTTGCTCTCAACACAGAGATGA	57.659	40.909	1.53	0.00	43.27	2.92
652	737	4.083431	CCTTTTGCTCTCAACACAGAGATG	60.083	45.833	1.53	0.00	43.27	2.90
653	738	4.070716	CCTTTTGCTCTCAACACAGAGAT	58.929	43.478	1.53	0.00	43.27	2.75
654	739	3.118261	ACCTTTTGCTCTCAACACAGAGA	60.118	43.478	1.53	0.00	42.44	3.10
655	740	3.209410	ACCTTTTGCTCTCAACACAGAG	58.791	45.455	0.00	0.00	42.68	3.35
656	741	3.206150	GACCTTTTGCTCTCAACACAGA	58.794	45.455	0.00	0.00	30.75	3.41
657	742	2.945008	TGACCTTTTGCTCTCAACACAG	59.055	45.455	0.00	0.00	30.75	3.66
658	743	2.945008	CTGACCTTTTGCTCTCAACACA	59.055	45.455	0.00	0.00	30.75	3.72
659	744	3.206150	TCTGACCTTTTGCTCTCAACAC	58.794	45.455	0.00	0.00	30.75	3.32
660	745	3.558931	TCTGACCTTTTGCTCTCAACA	57.441	42.857	0.00	0.00	30.75	3.33
661	746	3.003793	GGTTCTGACCTTTTGCTCTCAAC	59.996	47.826	0.00	0.00	42.99	3.18
662	747	3.214328	GGTTCTGACCTTTTGCTCTCAA	58.786	45.455	0.00	0.00	42.99	3.02
663	748	2.806745	CGGTTCTGACCTTTTGCTCTCA	60.807	50.000	0.00	0.00	44.20	3.27
664	749	1.801178	CGGTTCTGACCTTTTGCTCTC	59.199	52.381	0.00	0.00	44.20	3.20
665	750	1.141053	ACGGTTCTGACCTTTTGCTCT	59.859	47.619	0.00	0.00	44.20	4.09
666	751	1.264288	CACGGTTCTGACCTTTTGCTC	59.736	52.381	0.00	0.00	44.20	4.26
667	752	1.134220	TCACGGTTCTGACCTTTTGCT	60.134	47.619	0.00	0.00	44.20	3.91
668	753	1.002792	GTCACGGTTCTGACCTTTTGC	60.003	52.381	0.00	0.00	44.20	3.68
669	754	2.561569	AGTCACGGTTCTGACCTTTTG	58.438	47.619	0.66	0.00	44.20	2.44
670	755	3.277142	AAGTCACGGTTCTGACCTTTT	57.723	42.857	0.66	0.00	44.20	2.27
671	756	3.203716	GAAAGTCACGGTTCTGACCTTT	58.796	45.455	0.66	2.06	44.20	3.11
682	767	0.871722	TCGGCAAATGAAAGTCACGG	59.128	50.000	0.00	0.00	0.00	4.94
703	788	0.527600	GACACGCGGTCATATCAGCA	60.528	55.000	12.47	0.00	46.19	4.41
906	991	3.171828	TACTGCGTGGTGGTGGTGG	62.172	63.158	0.00	0.00	0.00	4.61
908	993	2.424302	GTACTGCGTGGTGGTGGT	59.576	61.111	0.00	0.00	0.00	4.16
971	1059	2.807107	CGATGGGCTTCGGGATGGA	61.807	63.158	3.04	0.00	35.50	3.41
1008	1096	2.331805	CCTCGATACGGCTCGTGG	59.668	66.667	13.20	13.20	43.36	4.94
1029	1117	2.184167	GCGGAGGAGGAGACGAGAG	61.184	68.421	0.00	0.00	0.00	3.20
1075	1165	3.943479	AATAACAGCACGGCGGCGA	62.943	57.895	38.93	14.37	39.27	5.54
1235	1325	1.359117	CGCGCTCCCGATCTTTCTA	59.641	57.895	5.56	0.00	36.29	2.10
1256	1346	2.440599	CCAACCTTCCCACCCAGG	59.559	66.667	0.00	0.00	36.10	4.45
1568	1697	1.849219	GATGACGTGATCGCTTCTCAC	59.151	52.381	13.24	2.57	41.18	3.51
1575	1704	0.248094	TGAGTCGATGACGTGATCGC	60.248	55.000	28.99	23.11	44.04	4.58
1600	1729	5.582950	AGATAGAGACCAGTCTGAGCTAT	57.417	43.478	4.74	6.18	40.61	2.97
1660	1789	9.080097	GGTCAGAACATGGTAGATAATACTAGT	57.920	37.037	0.00	0.00	0.00	2.57
1661	1790	9.303116	AGGTCAGAACATGGTAGATAATACTAG	57.697	37.037	0.00	0.00	0.00	2.57
1662	1791	9.298250	GAGGTCAGAACATGGTAGATAATACTA	57.702	37.037	0.00	0.00	0.00	1.82
1663	1792	7.785028	TGAGGTCAGAACATGGTAGATAATACT	59.215	37.037	0.00	0.00	0.00	2.12
1664	1793	7.952671	TGAGGTCAGAACATGGTAGATAATAC	58.047	38.462	0.00	0.00	0.00	1.89
1665	1794	7.233553	CCTGAGGTCAGAACATGGTAGATAATA	59.766	40.741	8.64	0.00	46.59	0.98
1666	1795	6.042552	CCTGAGGTCAGAACATGGTAGATAAT	59.957	42.308	8.64	0.00	46.59	1.28
1668	1797	4.895889	CCTGAGGTCAGAACATGGTAGATA	59.104	45.833	8.64	0.00	46.59	1.98
1670	1799	3.099905	CCTGAGGTCAGAACATGGTAGA	58.900	50.000	8.64	0.00	46.59	2.59
1673	1802	0.987294	CCCTGAGGTCAGAACATGGT	59.013	55.000	8.64	0.00	46.59	3.55
1674	1803	0.393537	GCCCTGAGGTCAGAACATGG	60.394	60.000	8.64	2.10	46.59	3.66
1675	1804	0.325933	TGCCCTGAGGTCAGAACATG	59.674	55.000	8.64	0.00	46.59	3.21
1677	1806	0.325933	CATGCCCTGAGGTCAGAACA	59.674	55.000	8.64	6.48	46.59	3.18
1678	1807	0.393537	CCATGCCCTGAGGTCAGAAC	60.394	60.000	8.64	0.93	46.59	3.01
1680	1809	2.673200	GCCATGCCCTGAGGTCAGA	61.673	63.158	8.64	0.00	46.59	3.27
1681	1810	2.124403	GCCATGCCCTGAGGTCAG	60.124	66.667	0.00	0.00	43.40	3.51
1682	1811	3.731728	GGCCATGCCCTGAGGTCA	61.732	66.667	0.00	0.00	44.06	4.02
1748	2191	6.407299	GGCATTAGATTTTGATCCACATTGGT	60.407	38.462	0.00	0.00	39.03	3.67
1786	2229	4.574828	GTCAACTTTTCTGAGGCAACACTA	59.425	41.667	0.00	0.00	41.41	2.74
1787	2230	3.378427	GTCAACTTTTCTGAGGCAACACT	59.622	43.478	0.00	0.00	41.41	3.55
1967	2420	0.390860	GCATGATGTACCTCGGCTCT	59.609	55.000	0.00	0.00	0.00	4.09
1983	2436	2.806945	TTTCTCCGAAATCCAGGCAT	57.193	45.000	0.00	0.00	0.00	4.40
1986	2439	4.278419	ACAAGTTTTTCTCCGAAATCCAGG	59.722	41.667	0.00	0.00	0.00	4.45
2190	2643	2.359900	CTCAAGGCCTCATGTGGTTAC	58.640	52.381	5.23	6.46	0.00	2.50
2274	2727	0.041090	CCATAGCCCCCACCACTTTT	59.959	55.000	0.00	0.00	0.00	2.27
2366	2819	1.000019	TCATCTCGTTCCCCTCGGT	60.000	57.895	0.00	0.00	0.00	4.69
2368	2821	1.320344	TGGTCATCTCGTTCCCCTCG	61.320	60.000	0.00	0.00	0.00	4.63
2383	2836	2.224161	CCGATCTTCTTCCTCCATGGTC	60.224	54.545	12.58	0.00	37.07	4.02
2540	2993	4.511826	CGGCTAAGAGTTTGAACAAGTTCT	59.488	41.667	13.49	0.00	40.14	3.01
2541	2994	4.272748	ACGGCTAAGAGTTTGAACAAGTTC	59.727	41.667	6.01	6.01	39.91	3.01
2576	3029	2.224314	GCTCTGACTTGTCCTTTTTCGG	59.776	50.000	0.00	0.00	0.00	4.30
2584	3037	2.435059	GCGGGCTCTGACTTGTCC	60.435	66.667	0.00	0.00	0.00	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.