Multiple sequence alignment - TraesCS6D01G169600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G169600 chr6D 100.000 6340 0 0 1 6340 156018271 156011932 0.000000e+00 11708.0
1 TraesCS6D01G169600 chr6D 98.848 5036 55 3 544 5578 54815870 54820903 0.000000e+00 8975.0
2 TraesCS6D01G169600 chr6D 95.348 2644 109 8 1435 4072 62081585 62078950 0.000000e+00 4189.0
3 TraesCS6D01G169600 chr6D 97.964 393 7 1 100 492 54815195 54815586 0.000000e+00 680.0
4 TraesCS6D01G169600 chr6D 93.750 96 4 1 1 96 62082836 62082743 6.630000e-30 143.0
5 TraesCS6D01G169600 chr3A 95.381 5044 199 19 549 5578 500017451 500022474 0.000000e+00 7993.0
6 TraesCS6D01G169600 chr3A 94.950 3089 136 11 991 4069 543423107 543426185 0.000000e+00 4822.0
7 TraesCS6D01G169600 chr3A 90.231 1515 133 9 4070 5578 468234063 468232558 0.000000e+00 1964.0
8 TraesCS6D01G169600 chr3A 92.457 464 29 3 90 553 500016711 500017168 0.000000e+00 658.0
9 TraesCS6D01G169600 chr3A 95.484 155 7 0 515 669 468237633 468237479 1.360000e-61 248.0
10 TraesCS6D01G169600 chr3A 92.708 96 5 1 1 96 468238234 468238141 3.080000e-28 137.0
11 TraesCS6D01G169600 chr7D 95.250 3095 128 11 984 4069 625868020 625871104 0.000000e+00 4883.0
12 TraesCS6D01G169600 chr7D 94.287 3098 139 12 984 4072 485664360 485661292 0.000000e+00 4706.0
13 TraesCS6D01G169600 chr7D 95.272 2644 111 8 1435 4072 32520419 32517784 0.000000e+00 4178.0
14 TraesCS6D01G169600 chr7D 90.297 1515 128 9 4070 5579 625871322 625872822 0.000000e+00 1965.0
15 TraesCS6D01G169600 chr7D 95.916 759 31 0 5582 6340 534600926 534601684 0.000000e+00 1230.0
16 TraesCS6D01G169600 chr7D 94.778 766 39 1 5575 6340 546831523 546830759 0.000000e+00 1192.0
17 TraesCS6D01G169600 chr7D 94.133 767 42 3 5575 6340 70334323 70335087 0.000000e+00 1164.0
18 TraesCS6D01G169600 chr7D 96.203 158 6 0 512 669 625867689 625867846 6.310000e-65 259.0
19 TraesCS6D01G169600 chr7D 96.104 154 6 0 516 669 485664691 485664538 1.060000e-62 252.0
20 TraesCS6D01G169600 chr7D 95.484 155 7 0 515 669 32521030 32520876 1.360000e-61 248.0
21 TraesCS6D01G169600 chr7D 93.750 96 4 1 1 96 32521667 32521574 6.630000e-30 143.0
22 TraesCS6D01G169600 chr7D 92.473 93 5 2 1 93 485665329 485665239 1.430000e-26 132.0
23 TraesCS6D01G169600 chr5D 94.868 3098 136 12 984 4072 182587056 182583973 0.000000e+00 4819.0
24 TraesCS6D01G169600 chr5D 90.363 1515 127 9 4070 5578 524007548 524009049 0.000000e+00 1971.0
25 TraesCS6D01G169600 chr5D 94.909 766 38 1 5575 6340 379057565 379056801 0.000000e+00 1197.0
26 TraesCS6D01G169600 chr5D 94.256 766 43 1 5575 6340 65804849 65805613 0.000000e+00 1170.0
27 TraesCS6D01G169600 chr5D 92.708 96 5 1 1 96 182588021 182587928 3.080000e-28 137.0
28 TraesCS6D01G169600 chr2D 94.563 2722 125 14 1353 4069 97592888 97595591 0.000000e+00 4185.0
29 TraesCS6D01G169600 chr2D 96.349 767 27 1 5574 6340 554585203 554584438 0.000000e+00 1260.0
30 TraesCS6D01G169600 chr1A 94.407 2664 138 6 1411 4069 379474454 379477111 0.000000e+00 4084.0
31 TraesCS6D01G169600 chr1A 92.739 1515 92 13 4070 5579 517804945 517806446 0.000000e+00 2172.0
32 TraesCS6D01G169600 chr1A 94.859 1381 62 6 4203 5579 33835108 33836483 0.000000e+00 2148.0
33 TraesCS6D01G169600 chr1A 94.928 414 21 0 90 503 379472795 379473208 0.000000e+00 649.0
34 TraesCS6D01G169600 chr1A 95.484 155 7 0 515 669 434043880 434044034 1.360000e-61 248.0
35 TraesCS6D01G169600 chr1A 92.473 93 5 1 1 93 379472616 379472706 1.430000e-26 132.0
36 TraesCS6D01G169600 chr7A 95.865 2467 88 6 2676 5139 654501167 654498712 0.000000e+00 3978.0
37 TraesCS6D01G169600 chr7A 91.749 1515 113 8 4070 5579 51910683 51909176 0.000000e+00 2095.0
38 TraesCS6D01G169600 chr2B 94.118 1513 83 4 4070 5578 2002483 2000973 0.000000e+00 2296.0
39 TraesCS6D01G169600 chr2B 89.474 304 17 4 1245 1533 120981114 120980811 2.790000e-98 370.0
40 TraesCS6D01G169600 chr1D 96.606 766 25 1 5575 6340 369531617 369532381 0.000000e+00 1269.0
41 TraesCS6D01G169600 chr1D 94.256 766 43 1 5575 6340 141613029 141613793 0.000000e+00 1170.0
42 TraesCS6D01G169600 chr3D 94.862 759 39 0 5582 6340 15735751 15736509 0.000000e+00 1186.0
43 TraesCS6D01G169600 chr7B 90.895 637 41 5 911 1533 747298292 747297659 0.000000e+00 839.0
44 TraesCS6D01G169600 chr7B 95.218 481 19 1 721 1201 411606018 411606494 0.000000e+00 758.0
45 TraesCS6D01G169600 chr7B 93.720 414 23 2 90 503 747299703 747299293 9.030000e-173 617.0
46 TraesCS6D01G169600 chr6B 93.555 481 24 2 721 1201 375641981 375641508 0.000000e+00 710.0
47 TraesCS6D01G169600 chr6B 93.555 481 24 2 721 1201 710547624 710547151 0.000000e+00 710.0
48 TraesCS6D01G169600 chr6B 93.139 481 26 2 721 1201 393072409 393072882 0.000000e+00 699.0
49 TraesCS6D01G169600 chr6B 92.931 481 27 2 721 1201 196483742 196484215 0.000000e+00 693.0
50 TraesCS6D01G169600 chr6B 95.411 414 18 1 90 503 720620508 720620920 0.000000e+00 658.0
51 TraesCS6D01G169600 chr6B 94.686 414 20 2 90 503 196483063 196483474 5.360000e-180 641.0
52 TraesCS6D01G169600 chr6B 93.961 414 23 2 90 503 375642659 375642248 5.400000e-175 625.0
53 TraesCS6D01G169600 chr6B 93.720 414 24 2 90 503 393071731 393072142 2.510000e-173 619.0
54 TraesCS6D01G169600 chr6B 95.302 149 7 0 1353 1501 720628557 720628705 2.950000e-58 237.0
55 TraesCS6D01G169600 chr6B 92.473 93 5 1 1 93 720620332 720620422 1.430000e-26 132.0
56 TraesCS6D01G169600 chr1B 93.139 481 26 2 721 1201 586559279 586559752 0.000000e+00 699.0
57 TraesCS6D01G169600 chr5B 92.931 481 27 2 721 1201 446179067 446178594 0.000000e+00 693.0
58 TraesCS6D01G169600 chr2A 95.169 414 18 2 90 503 90615546 90615135 0.000000e+00 652.0
59 TraesCS6D01G169600 chr2A 95.570 158 7 0 515 672 743398484 743398327 2.930000e-63 254.0
60 TraesCS6D01G169600 chr2A 91.667 96 6 1 1 96 90615725 90615632 1.430000e-26 132.0
61 TraesCS6D01G169600 chr6A 94.937 158 8 0 515 672 343411439 343411282 1.360000e-61 248.0
62 TraesCS6D01G169600 chr4A 93.548 93 4 2 1 93 402277043 402277133 3.080000e-28 137.0
63 TraesCS6D01G169600 chr3B 100.000 34 0 0 1292 1325 585687423 585687390 5.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G169600 chr6D 156011932 156018271 6339 True 11708.000000 11708 100.000000 1 6340 1 chr6D.!!$R1 6339
1 TraesCS6D01G169600 chr6D 54815195 54820903 5708 False 4827.500000 8975 98.406000 100 5578 2 chr6D.!!$F1 5478
2 TraesCS6D01G169600 chr6D 62078950 62082836 3886 True 2166.000000 4189 94.549000 1 4072 2 chr6D.!!$R2 4071
3 TraesCS6D01G169600 chr3A 543423107 543426185 3078 False 4822.000000 4822 94.950000 991 4069 1 chr3A.!!$F1 3078
4 TraesCS6D01G169600 chr3A 500016711 500022474 5763 False 4325.500000 7993 93.919000 90 5578 2 chr3A.!!$F2 5488
5 TraesCS6D01G169600 chr3A 468232558 468238234 5676 True 783.000000 1964 92.807667 1 5578 3 chr3A.!!$R1 5577
6 TraesCS6D01G169600 chr7D 625867689 625872822 5133 False 2369.000000 4883 93.916667 512 5579 3 chr7D.!!$F3 5067
7 TraesCS6D01G169600 chr7D 485661292 485665329 4037 True 1696.666667 4706 94.288000 1 4072 3 chr7D.!!$R3 4071
8 TraesCS6D01G169600 chr7D 32517784 32521667 3883 True 1523.000000 4178 94.835333 1 4072 3 chr7D.!!$R2 4071
9 TraesCS6D01G169600 chr7D 534600926 534601684 758 False 1230.000000 1230 95.916000 5582 6340 1 chr7D.!!$F2 758
10 TraesCS6D01G169600 chr7D 546830759 546831523 764 True 1192.000000 1192 94.778000 5575 6340 1 chr7D.!!$R1 765
11 TraesCS6D01G169600 chr7D 70334323 70335087 764 False 1164.000000 1164 94.133000 5575 6340 1 chr7D.!!$F1 765
12 TraesCS6D01G169600 chr5D 182583973 182588021 4048 True 2478.000000 4819 93.788000 1 4072 2 chr5D.!!$R2 4071
13 TraesCS6D01G169600 chr5D 524007548 524009049 1501 False 1971.000000 1971 90.363000 4070 5578 1 chr5D.!!$F2 1508
14 TraesCS6D01G169600 chr5D 379056801 379057565 764 True 1197.000000 1197 94.909000 5575 6340 1 chr5D.!!$R1 765
15 TraesCS6D01G169600 chr5D 65804849 65805613 764 False 1170.000000 1170 94.256000 5575 6340 1 chr5D.!!$F1 765
16 TraesCS6D01G169600 chr2D 97592888 97595591 2703 False 4185.000000 4185 94.563000 1353 4069 1 chr2D.!!$F1 2716
17 TraesCS6D01G169600 chr2D 554584438 554585203 765 True 1260.000000 1260 96.349000 5574 6340 1 chr2D.!!$R1 766
18 TraesCS6D01G169600 chr1A 517804945 517806446 1501 False 2172.000000 2172 92.739000 4070 5579 1 chr1A.!!$F3 1509
19 TraesCS6D01G169600 chr1A 33835108 33836483 1375 False 2148.000000 2148 94.859000 4203 5579 1 chr1A.!!$F1 1376
20 TraesCS6D01G169600 chr1A 379472616 379477111 4495 False 1621.666667 4084 93.936000 1 4069 3 chr1A.!!$F4 4068
21 TraesCS6D01G169600 chr7A 654498712 654501167 2455 True 3978.000000 3978 95.865000 2676 5139 1 chr7A.!!$R2 2463
22 TraesCS6D01G169600 chr7A 51909176 51910683 1507 True 2095.000000 2095 91.749000 4070 5579 1 chr7A.!!$R1 1509
23 TraesCS6D01G169600 chr2B 2000973 2002483 1510 True 2296.000000 2296 94.118000 4070 5578 1 chr2B.!!$R1 1508
24 TraesCS6D01G169600 chr1D 369531617 369532381 764 False 1269.000000 1269 96.606000 5575 6340 1 chr1D.!!$F2 765
25 TraesCS6D01G169600 chr1D 141613029 141613793 764 False 1170.000000 1170 94.256000 5575 6340 1 chr1D.!!$F1 765
26 TraesCS6D01G169600 chr3D 15735751 15736509 758 False 1186.000000 1186 94.862000 5582 6340 1 chr3D.!!$F1 758
27 TraesCS6D01G169600 chr7B 747297659 747299703 2044 True 728.000000 839 92.307500 90 1533 2 chr7B.!!$R1 1443
28 TraesCS6D01G169600 chr6B 375641508 375642659 1151 True 667.500000 710 93.758000 90 1201 2 chr6B.!!$R2 1111
29 TraesCS6D01G169600 chr6B 196483063 196484215 1152 False 667.000000 693 93.808500 90 1201 2 chr6B.!!$F2 1111
30 TraesCS6D01G169600 chr6B 393071731 393072882 1151 False 659.000000 699 93.429500 90 1201 2 chr6B.!!$F3 1111
31 TraesCS6D01G169600 chr6B 720620332 720620920 588 False 395.000000 658 93.942000 1 503 2 chr6B.!!$F4 502
32 TraesCS6D01G169600 chr2A 90615135 90615725 590 True 392.000000 652 93.418000 1 503 2 chr2A.!!$R2 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.764890 AGAGCCAACCACAACAGCTA 59.235 50.000 0.00 0.00 32.97 3.32 F
509 602 2.031012 CTGCAGGCCTCGTGACAA 59.969 61.111 0.00 0.00 0.00 3.18 F
510 603 2.280797 TGCAGGCCTCGTGACAAC 60.281 61.111 0.00 0.00 0.00 3.32 F
1433 3104 3.192633 TCGTTACAAGCTGAGCATGAGTA 59.807 43.478 17.22 5.51 31.38 2.59 F
2225 4104 0.600782 GTTCAAGGACGGCGTGGTAA 60.601 55.000 21.19 1.09 0.00 2.85 F
3270 5157 0.679002 ATGCAAGTCATCGCAGCCTT 60.679 50.000 0.00 0.00 42.37 4.35 F
4546 6664 3.482436 GACTGGACTCTAGATCACGGAT 58.518 50.000 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 3104 4.973168 TCAAGGTCAAGCTGTAGAACATT 58.027 39.130 0.00 0.00 0.00 2.71 R
2045 3921 5.125417 GCTTCTACAGCCCAAATCATACAAA 59.875 40.000 0.00 0.00 43.65 2.83 R
2217 4096 7.968405 ACTTTCTTTTCATTATGATTACCACGC 59.032 33.333 0.00 0.00 0.00 5.34 R
3270 5157 2.036387 CTCCATGTATCCGTACCCACA 58.964 52.381 0.00 0.00 0.00 4.17 R
4115 6222 5.173312 CGAGCGACGACATACATTAATTTCT 59.827 40.000 0.00 0.00 45.77 2.52 R
5220 7413 0.530744 TCGTGGCGCAATACTCTTCT 59.469 50.000 10.83 0.00 0.00 2.85 R
5718 7917 0.467290 GGTTGGAACAGTTCTGCCCA 60.467 55.000 13.13 0.21 42.39 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.112709 GACGGCGTCAACAGAGCC 61.113 66.667 33.07 4.36 46.88 4.70
83 84 0.764890 AGAGCCAACCACAACAGCTA 59.235 50.000 0.00 0.00 32.97 3.32
509 602 2.031012 CTGCAGGCCTCGTGACAA 59.969 61.111 0.00 0.00 0.00 3.18
510 603 2.280797 TGCAGGCCTCGTGACAAC 60.281 61.111 0.00 0.00 0.00 3.32
540 913 6.639563 CCCCCTCCAAAACTATATTTTGTTG 58.360 40.000 10.34 3.99 37.62 3.33
847 1558 9.431887 GGTTAGCTTTCGATGTAATATTATCCA 57.568 33.333 0.00 0.00 0.00 3.41
1433 3104 3.192633 TCGTTACAAGCTGAGCATGAGTA 59.807 43.478 17.22 5.51 31.38 2.59
1892 3768 7.060421 TCTTTTACAGGAACTCCAGAACAATT 58.940 34.615 0.00 0.00 34.60 2.32
2217 4096 2.182825 CTATCGTTCGTTCAAGGACGG 58.817 52.381 0.45 0.00 42.98 4.79
2225 4104 0.600782 GTTCAAGGACGGCGTGGTAA 60.601 55.000 21.19 1.09 0.00 2.85
2657 4542 9.998106 ACTGTTTGTCTACTATGTGTAAAGATT 57.002 29.630 0.00 0.00 0.00 2.40
3270 5157 0.679002 ATGCAAGTCATCGCAGCCTT 60.679 50.000 0.00 0.00 42.37 4.35
4421 6535 6.562518 AGTCTAGTTAGTTTGGCGATAGTTC 58.437 40.000 0.00 0.00 39.35 3.01
4422 6536 6.377712 AGTCTAGTTAGTTTGGCGATAGTTCT 59.622 38.462 0.00 0.00 39.35 3.01
4423 6537 6.692249 GTCTAGTTAGTTTGGCGATAGTTCTC 59.308 42.308 0.00 0.00 39.35 2.87
4431 6545 6.369065 AGTTTGGCGATAGTTCTCTTTAACAG 59.631 38.462 0.00 0.00 39.35 3.16
4546 6664 3.482436 GACTGGACTCTAGATCACGGAT 58.518 50.000 0.00 0.00 0.00 4.18
4584 6702 7.573096 CGCAGTTAATTAGGATGGCGAAATTAT 60.573 37.037 11.22 0.00 45.42 1.28
5220 7413 2.230992 GCCACAATTGACTATTGCCACA 59.769 45.455 13.59 0.00 46.21 4.17
5312 7505 1.358877 TCAGTCGCCACGATTCATTG 58.641 50.000 0.00 0.00 38.42 2.82
5342 7535 8.786898 GTTGCATTAAAGCTATCTCCATGAATA 58.213 33.333 4.10 0.00 34.99 1.75
5579 7778 1.136500 GACCCGGATCCTTGTAGTGAC 59.864 57.143 10.75 0.00 0.00 3.67
5718 7917 3.279434 GAATGGTAACGGAGGAAGCAAT 58.721 45.455 0.00 0.00 42.51 3.56
5895 8094 1.149101 ACAGGGGACAAGTGAACCAT 58.851 50.000 0.00 0.00 0.00 3.55
6019 8218 7.336679 CGCATTCATACATATCAAGGGGATTTA 59.663 37.037 0.00 0.00 37.44 1.40
6047 8246 3.089284 AGTATAAGTTGCCCACCAAAGC 58.911 45.455 0.00 0.00 34.68 3.51
6178 8377 4.394920 TGATAATTTTGGAGTCGCAAGGTC 59.605 41.667 0.00 0.00 38.47 3.85
6191 8390 2.159476 CGCAAGGTCTGGATGTGATTTG 60.159 50.000 0.00 0.00 0.00 2.32
6325 8525 3.990959 AGAGGACTCAAGTGAATTCCC 57.009 47.619 2.27 0.00 30.29 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.689161 ACAGATGAACAGAGACGAGAGAG 59.311 47.826 0.00 0.00 0.00 3.20
16 17 3.438434 CACAGATGAACAGAGACGAGAGA 59.562 47.826 0.00 0.00 0.00 3.10
69 70 0.586319 CCGTGTAGCTGTTGTGGTTG 59.414 55.000 0.00 0.00 0.00 3.77
117 210 1.519246 CGCATCAAGGAGGAGCTCA 59.481 57.895 17.19 0.00 31.08 4.26
338 431 4.166888 GAGGCGAGCTCCATGGCA 62.167 66.667 6.96 0.00 34.17 4.92
540 913 4.791676 GCACCAAAACGCTTAGTAATTAGC 59.208 41.667 0.00 0.00 0.00 3.09
1000 2235 3.186909 TGCTCTGTTGACGCACATATAC 58.813 45.455 0.00 0.00 0.00 1.47
1433 3104 4.973168 TCAAGGTCAAGCTGTAGAACATT 58.027 39.130 0.00 0.00 0.00 2.71
1821 3694 6.496911 AGCTATTTAACCCACACCAAGATTTT 59.503 34.615 0.00 0.00 0.00 1.82
1822 3695 6.016555 AGCTATTTAACCCACACCAAGATTT 58.983 36.000 0.00 0.00 0.00 2.17
1823 3696 5.580022 AGCTATTTAACCCACACCAAGATT 58.420 37.500 0.00 0.00 0.00 2.40
2045 3921 5.125417 GCTTCTACAGCCCAAATCATACAAA 59.875 40.000 0.00 0.00 43.65 2.83
2217 4096 7.968405 ACTTTCTTTTCATTATGATTACCACGC 59.032 33.333 0.00 0.00 0.00 5.34
2885 4772 3.191888 TCTAGCTCTTCCCCAGTTTCT 57.808 47.619 0.00 0.00 0.00 2.52
3270 5157 2.036387 CTCCATGTATCCGTACCCACA 58.964 52.381 0.00 0.00 0.00 4.17
4115 6222 5.173312 CGAGCGACGACATACATTAATTTCT 59.827 40.000 0.00 0.00 45.77 2.52
4365 6476 1.098050 GCAAGCATGTAACTGAGGGG 58.902 55.000 0.00 0.00 0.00 4.79
4421 6535 4.553330 TTCTAGCCCCACTGTTAAAGAG 57.447 45.455 0.00 0.00 0.00 2.85
4422 6536 6.630203 TTATTCTAGCCCCACTGTTAAAGA 57.370 37.500 0.00 0.00 0.00 2.52
4423 6537 7.339466 ACAATTATTCTAGCCCCACTGTTAAAG 59.661 37.037 0.00 0.00 0.00 1.85
4431 6545 4.459337 GCCATACAATTATTCTAGCCCCAC 59.541 45.833 0.00 0.00 0.00 4.61
5220 7413 0.530744 TCGTGGCGCAATACTCTTCT 59.469 50.000 10.83 0.00 0.00 2.85
5312 7505 5.218139 GGAGATAGCTTTAATGCAACATGC 58.782 41.667 15.00 0.00 45.29 4.06
5342 7535 4.588528 ACACTCACCTAATGCCACAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
5426 7619 7.868922 GGTTATTACCACGAAAAAGGAATTGTT 59.131 33.333 0.00 0.00 44.36 2.83
5579 7778 0.831966 AGGCTTCTGATGAGCTCCTG 59.168 55.000 12.15 0.76 0.00 3.86
5718 7917 0.467290 GGTTGGAACAGTTCTGCCCA 60.467 55.000 13.13 0.21 42.39 5.36
5808 8007 3.007506 TCTTTGCTTCCGGACAATCAGTA 59.992 43.478 1.83 0.00 0.00 2.74
5895 8094 1.202964 TCTACCTCCTCCACGTTGACA 60.203 52.381 0.00 0.00 0.00 3.58
6019 8218 5.133660 TGGTGGGCAACTTATACTTATCCAT 59.866 40.000 0.00 0.00 0.00 3.41
6047 8246 8.688151 AGCTTACTAACATAGGTGTTCTAAGAG 58.312 37.037 15.70 5.31 45.14 2.85
6075 8274 3.308401 TGCCATATACTCTGCTCCTGAA 58.692 45.455 0.00 0.00 0.00 3.02
6076 8275 2.962859 TGCCATATACTCTGCTCCTGA 58.037 47.619 0.00 0.00 0.00 3.86
6178 8377 3.117550 TCCATACCCCAAATCACATCCAG 60.118 47.826 0.00 0.00 0.00 3.86
6191 8390 1.906574 TCGATAGCCAATCCATACCCC 59.093 52.381 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.