Multiple sequence alignment - TraesCS6D01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G169100 chr6D 100.000 2837 0 0 1 2837 155045403 155048239 0.000000e+00 5240.0
1 TraesCS6D01G169100 chr6D 96.350 411 12 1 2430 2837 155123149 155123559 0.000000e+00 673.0
2 TraesCS6D01G169100 chr6D 92.927 410 26 1 2430 2836 155224919 155225328 6.770000e-166 593.0
3 TraesCS6D01G169100 chr6D 92.476 412 26 2 2430 2836 155066968 155067379 4.070000e-163 584.0
4 TraesCS6D01G169100 chr6D 91.727 411 29 3 2430 2836 155072987 155073396 1.480000e-157 566.0
5 TraesCS6D01G169100 chr6D 90.511 411 35 2 2430 2836 232143089 232142679 8.940000e-150 540.0
6 TraesCS6D01G169100 chr6D 92.308 208 16 0 2219 2426 155066718 155066925 2.140000e-76 296.0
7 TraesCS6D01G169100 chr6D 90.865 208 19 0 2219 2426 155122899 155123106 2.150000e-71 279.0
8 TraesCS6D01G169100 chr6D 100.000 28 0 0 665 692 453463749 453463776 5.000000e-03 52.8
9 TraesCS6D01G169100 chr6A 91.336 1362 64 23 718 2031 208383604 208384959 0.000000e+00 1812.0
10 TraesCS6D01G169100 chr6A 86.517 178 17 4 503 680 208383172 208383342 3.730000e-44 189.0
11 TraesCS6D01G169100 chr6B 90.502 1295 49 23 718 1962 278150886 278152156 0.000000e+00 1642.0
12 TraesCS6D01G169100 chr6B 89.130 506 46 4 194 695 278137271 278137771 3.100000e-174 621.0
13 TraesCS6D01G169100 chr7B 84.689 627 86 6 2219 2836 2530856 2530231 4.020000e-173 617.0
14 TraesCS6D01G169100 chr7D 90.998 411 33 2 2430 2836 313733326 313732916 4.130000e-153 551.0
15 TraesCS6D01G169100 chr7D 90.754 411 34 4 2430 2836 316866358 316865948 1.920000e-151 545.0
16 TraesCS6D01G169100 chr7D 95.288 191 7 2 1 190 365298352 365298541 4.590000e-78 302.0
17 TraesCS6D01G169100 chr7D 89.904 208 21 0 2219 2426 371303343 371303550 4.660000e-68 268.0
18 TraesCS6D01G169100 chr4D 82.092 631 89 17 2224 2834 385918638 385918012 4.190000e-143 518.0
19 TraesCS6D01G169100 chr5D 95.431 197 9 0 1 197 255766566 255766762 5.900000e-82 315.0
20 TraesCS6D01G169100 chr7A 94.500 200 11 0 4 203 705477749 705477550 2.740000e-80 309.0
21 TraesCS6D01G169100 chr3D 95.812 191 8 0 1 191 439204358 439204548 2.740000e-80 309.0
22 TraesCS6D01G169100 chr3D 93.750 192 12 0 1 192 508326889 508327080 3.580000e-74 289.0
23 TraesCS6D01G169100 chr3D 90.476 210 20 0 2219 2428 412251751 412251542 7.740000e-71 278.0
24 TraesCS6D01G169100 chr3D 90.385 208 20 0 2219 2426 276313772 276313565 1.000000e-69 274.0
25 TraesCS6D01G169100 chr2D 94.737 190 10 0 3 192 126059697 126059886 2.140000e-76 296.0
26 TraesCS6D01G169100 chr2D 90.952 210 19 0 2219 2428 183817258 183817467 1.660000e-72 283.0
27 TraesCS6D01G169100 chr2D 90.865 208 19 0 2219 2426 364189243 364189036 2.150000e-71 279.0
28 TraesCS6D01G169100 chr4B 94.681 188 10 0 3 190 5332957 5332770 2.760000e-75 292.0
29 TraesCS6D01G169100 chr4B 93.651 189 11 1 2 190 382021212 382021399 5.980000e-72 281.0
30 TraesCS6D01G169100 chr5B 94.211 190 11 0 1 190 191007933 191007744 9.940000e-75 291.0
31 TraesCS6D01G169100 chr5A 100.000 28 0 0 665 692 561552022 561552049 5.000000e-03 52.8
32 TraesCS6D01G169100 chr3B 100.000 28 0 0 665 692 728080938 728080965 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G169100 chr6D 155045403 155048239 2836 False 5240.0 5240 100.0000 1 2837 1 chr6D.!!$F1 2836
1 TraesCS6D01G169100 chr6D 155122899 155123559 660 False 476.0 673 93.6075 2219 2837 2 chr6D.!!$F6 618
2 TraesCS6D01G169100 chr6D 155066718 155067379 661 False 440.0 584 92.3920 2219 2836 2 chr6D.!!$F5 617
3 TraesCS6D01G169100 chr6A 208383172 208384959 1787 False 1000.5 1812 88.9265 503 2031 2 chr6A.!!$F1 1528
4 TraesCS6D01G169100 chr6B 278150886 278152156 1270 False 1642.0 1642 90.5020 718 1962 1 chr6B.!!$F2 1244
5 TraesCS6D01G169100 chr6B 278137271 278137771 500 False 621.0 621 89.1300 194 695 1 chr6B.!!$F1 501
6 TraesCS6D01G169100 chr7B 2530231 2530856 625 True 617.0 617 84.6890 2219 2836 1 chr7B.!!$R1 617
7 TraesCS6D01G169100 chr4D 385918012 385918638 626 True 518.0 518 82.0920 2224 2834 1 chr4D.!!$R1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 428 0.025898 CTGCATGCGATGTGACTTCG 59.974 55.0 14.09 15.41 39.55 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2479 0.035152 ACCGGCTGCATCTTGATTGA 60.035 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.902540 TGAATAACTTGTGTAGTGTTTGATCT 57.097 30.769 0.00 0.00 37.12 2.75
26 27 9.990360 TGAATAACTTGTGTAGTGTTTGATCTA 57.010 29.630 0.00 0.00 37.12 1.98
28 29 8.773404 ATAACTTGTGTAGTGTTTGATCTACC 57.227 34.615 0.00 0.00 37.12 3.18
29 30 5.548406 ACTTGTGTAGTGTTTGATCTACCC 58.452 41.667 0.00 0.00 36.63 3.69
30 31 4.182693 TGTGTAGTGTTTGATCTACCCG 57.817 45.455 0.00 0.00 36.63 5.28
31 32 3.575256 TGTGTAGTGTTTGATCTACCCGT 59.425 43.478 0.00 0.00 36.63 5.28
32 33 4.039488 TGTGTAGTGTTTGATCTACCCGTT 59.961 41.667 0.00 0.00 36.63 4.44
33 34 4.387862 GTGTAGTGTTTGATCTACCCGTTG 59.612 45.833 0.00 0.00 36.63 4.10
34 35 3.053831 AGTGTTTGATCTACCCGTTGG 57.946 47.619 0.00 0.00 37.80 3.77
74 75 0.750850 CCTGTCAGGTATGGGTACGG 59.249 60.000 11.09 0.00 0.00 4.02
75 76 0.750850 CTGTCAGGTATGGGTACGGG 59.249 60.000 0.00 0.00 0.00 5.28
76 77 0.041535 TGTCAGGTATGGGTACGGGT 59.958 55.000 0.00 0.00 0.00 5.28
77 78 0.462789 GTCAGGTATGGGTACGGGTG 59.537 60.000 0.00 0.00 0.00 4.61
78 79 0.335705 TCAGGTATGGGTACGGGTGA 59.664 55.000 0.00 0.00 0.00 4.02
79 80 1.196911 CAGGTATGGGTACGGGTGAA 58.803 55.000 0.00 0.00 0.00 3.18
80 81 1.138266 CAGGTATGGGTACGGGTGAAG 59.862 57.143 0.00 0.00 0.00 3.02
81 82 1.197812 GGTATGGGTACGGGTGAAGT 58.802 55.000 0.00 0.00 0.00 3.01
82 83 1.556451 GGTATGGGTACGGGTGAAGTT 59.444 52.381 0.00 0.00 0.00 2.66
83 84 2.026915 GGTATGGGTACGGGTGAAGTTT 60.027 50.000 0.00 0.00 0.00 2.66
84 85 2.484742 ATGGGTACGGGTGAAGTTTC 57.515 50.000 0.00 0.00 0.00 2.78
85 86 0.033781 TGGGTACGGGTGAAGTTTCG 59.966 55.000 0.00 0.00 0.00 3.46
86 87 0.033920 GGGTACGGGTGAAGTTTCGT 59.966 55.000 0.00 0.00 39.30 3.85
87 88 1.272212 GGGTACGGGTGAAGTTTCGTA 59.728 52.381 0.00 0.00 37.10 3.43
89 90 2.328473 GTACGGGTGAAGTTTCGTACC 58.672 52.381 12.11 0.00 46.78 3.34
90 91 2.926586 GTACGGGTGAAGTTTCGTACCC 60.927 54.545 12.11 9.35 46.78 3.69
94 95 2.081462 GGTGAAGTTTCGTACCCATGG 58.919 52.381 4.14 4.14 0.00 3.66
95 96 2.289819 GGTGAAGTTTCGTACCCATGGA 60.290 50.000 15.22 0.00 0.00 3.41
96 97 3.606687 GTGAAGTTTCGTACCCATGGAT 58.393 45.455 15.22 0.00 0.00 3.41
97 98 4.383335 GGTGAAGTTTCGTACCCATGGATA 60.383 45.833 15.22 0.00 0.00 2.59
98 99 4.569564 GTGAAGTTTCGTACCCATGGATAC 59.430 45.833 15.22 10.40 0.00 2.24
99 100 3.447918 AGTTTCGTACCCATGGATACG 57.552 47.619 29.77 29.77 44.34 3.06
100 101 2.101917 AGTTTCGTACCCATGGATACGG 59.898 50.000 33.34 17.90 43.41 4.02
108 109 1.358152 CCATGGATACGGGTATGGGT 58.642 55.000 5.56 0.00 37.11 4.51
109 110 2.542550 CCATGGATACGGGTATGGGTA 58.457 52.381 5.56 0.00 37.11 3.69
110 111 2.500098 CCATGGATACGGGTATGGGTAG 59.500 54.545 5.56 0.00 37.11 3.18
111 112 3.437213 CATGGATACGGGTATGGGTAGA 58.563 50.000 0.00 0.00 42.51 2.59
112 113 3.616343 TGGATACGGGTATGGGTAGAA 57.384 47.619 0.00 0.00 42.51 2.10
113 114 4.136341 TGGATACGGGTATGGGTAGAAT 57.864 45.455 0.00 0.00 42.51 2.40
114 115 4.495565 TGGATACGGGTATGGGTAGAATT 58.504 43.478 0.00 0.00 42.51 2.17
115 116 4.909088 TGGATACGGGTATGGGTAGAATTT 59.091 41.667 0.00 0.00 42.51 1.82
116 117 5.370289 TGGATACGGGTATGGGTAGAATTTT 59.630 40.000 0.00 0.00 42.51 1.82
117 118 5.704053 GGATACGGGTATGGGTAGAATTTTG 59.296 44.000 0.00 0.00 0.00 2.44
118 119 4.579647 ACGGGTATGGGTAGAATTTTGT 57.420 40.909 0.00 0.00 0.00 2.83
119 120 5.697082 ACGGGTATGGGTAGAATTTTGTA 57.303 39.130 0.00 0.00 0.00 2.41
120 121 5.430886 ACGGGTATGGGTAGAATTTTGTAC 58.569 41.667 0.00 0.00 0.00 2.90
121 122 4.818005 CGGGTATGGGTAGAATTTTGTACC 59.182 45.833 7.87 7.87 44.08 3.34
131 132 7.982224 GGTAGAATTTTGTACCCATTGACTAC 58.018 38.462 5.54 0.00 40.24 2.73
132 133 7.608761 GGTAGAATTTTGTACCCATTGACTACA 59.391 37.037 5.54 0.00 40.24 2.74
133 134 7.448748 AGAATTTTGTACCCATTGACTACAC 57.551 36.000 0.00 0.00 0.00 2.90
134 135 5.873179 ATTTTGTACCCATTGACTACACG 57.127 39.130 0.00 0.00 0.00 4.49
135 136 3.322211 TTGTACCCATTGACTACACGG 57.678 47.619 0.00 0.00 0.00 4.94
136 137 1.551430 TGTACCCATTGACTACACGGG 59.449 52.381 0.00 0.00 43.02 5.28
137 138 2.768046 ACCCATTGACTACACGGGT 58.232 52.632 0.00 0.00 45.53 5.28
140 141 2.833794 CCCATTGACTACACGGGTATG 58.166 52.381 0.00 0.00 31.80 2.39
141 142 2.484770 CCCATTGACTACACGGGTATGG 60.485 54.545 9.23 9.23 32.36 2.74
142 143 2.484770 CCATTGACTACACGGGTATGGG 60.485 54.545 8.44 0.00 30.25 4.00
143 144 1.941377 TTGACTACACGGGTATGGGT 58.059 50.000 0.00 0.00 0.00 4.51
144 145 2.824689 TGACTACACGGGTATGGGTA 57.175 50.000 0.00 0.00 0.00 3.69
145 146 3.317455 TGACTACACGGGTATGGGTAT 57.683 47.619 0.00 0.00 0.00 2.73
146 147 2.960384 TGACTACACGGGTATGGGTATG 59.040 50.000 0.00 0.00 0.00 2.39
147 148 2.298163 GACTACACGGGTATGGGTATGG 59.702 54.545 0.00 0.00 0.00 2.74
148 149 2.322658 CTACACGGGTATGGGTATGGT 58.677 52.381 0.00 0.00 0.00 3.55
149 150 2.475339 ACACGGGTATGGGTATGGTA 57.525 50.000 0.00 0.00 0.00 3.25
150 151 2.980548 ACACGGGTATGGGTATGGTAT 58.019 47.619 0.00 0.00 0.00 2.73
151 152 3.320129 ACACGGGTATGGGTATGGTATT 58.680 45.455 0.00 0.00 0.00 1.89
152 153 3.071892 ACACGGGTATGGGTATGGTATTG 59.928 47.826 0.00 0.00 0.00 1.90
153 154 2.039348 ACGGGTATGGGTATGGTATTGC 59.961 50.000 0.00 0.00 0.00 3.56
154 155 2.304761 CGGGTATGGGTATGGTATTGCT 59.695 50.000 0.00 0.00 0.00 3.91
155 156 3.618997 CGGGTATGGGTATGGTATTGCTC 60.619 52.174 0.00 0.00 0.00 4.26
156 157 3.587506 GGGTATGGGTATGGTATTGCTCT 59.412 47.826 0.00 0.00 0.00 4.09
157 158 4.781087 GGGTATGGGTATGGTATTGCTCTA 59.219 45.833 0.00 0.00 0.00 2.43
158 159 5.338137 GGGTATGGGTATGGTATTGCTCTAC 60.338 48.000 0.00 0.00 0.00 2.59
159 160 4.910458 ATGGGTATGGTATTGCTCTACC 57.090 45.455 7.99 7.99 41.39 3.18
160 161 3.697619 GGGTATGGTATTGCTCTACCC 57.302 52.381 11.32 0.61 43.42 3.69
161 162 2.028385 GGGTATGGTATTGCTCTACCCG 60.028 54.545 11.32 0.00 41.46 5.28
162 163 2.612221 GGTATGGTATTGCTCTACCCGC 60.612 54.545 11.32 3.80 40.47 6.13
163 164 0.396811 ATGGTATTGCTCTACCCGCC 59.603 55.000 11.32 0.00 40.47 6.13
164 165 1.070957 GGTATTGCTCTACCCGCCC 59.929 63.158 4.46 0.00 36.00 6.13
165 166 1.070957 GTATTGCTCTACCCGCCCC 59.929 63.158 0.00 0.00 0.00 5.80
166 167 1.383386 TATTGCTCTACCCGCCCCA 60.383 57.895 0.00 0.00 0.00 4.96
167 168 0.766674 TATTGCTCTACCCGCCCCAT 60.767 55.000 0.00 0.00 0.00 4.00
168 169 0.766674 ATTGCTCTACCCGCCCCATA 60.767 55.000 0.00 0.00 0.00 2.74
169 170 1.692173 TTGCTCTACCCGCCCCATAC 61.692 60.000 0.00 0.00 0.00 2.39
170 171 2.880380 GCTCTACCCGCCCCATACC 61.880 68.421 0.00 0.00 0.00 2.73
171 172 1.152312 CTCTACCCGCCCCATACCT 60.152 63.158 0.00 0.00 0.00 3.08
172 173 0.763223 CTCTACCCGCCCCATACCTT 60.763 60.000 0.00 0.00 0.00 3.50
173 174 0.562177 TCTACCCGCCCCATACCTTA 59.438 55.000 0.00 0.00 0.00 2.69
174 175 0.683412 CTACCCGCCCCATACCTTAC 59.317 60.000 0.00 0.00 0.00 2.34
175 176 0.763986 TACCCGCCCCATACCTTACC 60.764 60.000 0.00 0.00 0.00 2.85
176 177 2.826003 CCCGCCCCATACCTTACCC 61.826 68.421 0.00 0.00 0.00 3.69
177 178 2.073716 CCGCCCCATACCTTACCCA 61.074 63.158 0.00 0.00 0.00 4.51
178 179 1.423794 CCGCCCCATACCTTACCCAT 61.424 60.000 0.00 0.00 0.00 4.00
179 180 0.476771 CGCCCCATACCTTACCCATT 59.523 55.000 0.00 0.00 0.00 3.16
180 181 1.817740 CGCCCCATACCTTACCCATTG 60.818 57.143 0.00 0.00 0.00 2.82
181 182 1.995376 CCCCATACCTTACCCATTGC 58.005 55.000 0.00 0.00 0.00 3.56
182 183 1.480498 CCCCATACCTTACCCATTGCC 60.480 57.143 0.00 0.00 0.00 4.52
183 184 1.216678 CCCATACCTTACCCATTGCCA 59.783 52.381 0.00 0.00 0.00 4.92
184 185 2.158325 CCCATACCTTACCCATTGCCAT 60.158 50.000 0.00 0.00 0.00 4.40
185 186 3.157087 CCATACCTTACCCATTGCCATC 58.843 50.000 0.00 0.00 0.00 3.51
186 187 3.157087 CATACCTTACCCATTGCCATCC 58.843 50.000 0.00 0.00 0.00 3.51
187 188 1.308877 ACCTTACCCATTGCCATCCT 58.691 50.000 0.00 0.00 0.00 3.24
188 189 1.645919 ACCTTACCCATTGCCATCCTT 59.354 47.619 0.00 0.00 0.00 3.36
189 190 2.856231 ACCTTACCCATTGCCATCCTTA 59.144 45.455 0.00 0.00 0.00 2.69
190 191 3.117512 ACCTTACCCATTGCCATCCTTAG 60.118 47.826 0.00 0.00 0.00 2.18
191 192 2.656947 TACCCATTGCCATCCTTAGC 57.343 50.000 0.00 0.00 0.00 3.09
192 193 0.106015 ACCCATTGCCATCCTTAGCC 60.106 55.000 0.00 0.00 0.00 3.93
204 205 2.645802 TCCTTAGCCGAGAGAGAGTTC 58.354 52.381 0.00 0.00 0.00 3.01
228 229 2.420687 GGAGAGGGCATGGAAGTACTTG 60.421 54.545 14.14 0.00 0.00 3.16
247 248 1.507174 GAGTGGGTCGAGGAAGACG 59.493 63.158 0.00 0.00 41.81 4.18
287 289 4.258932 CGTTGCCGTGCCCGTTTT 62.259 61.111 0.00 0.00 0.00 2.43
292 294 2.914908 GCCGTGCCCGTTTTCATGT 61.915 57.895 0.00 0.00 0.00 3.21
312 314 3.083293 GTCTCCCTCGAGTACTTTGACT 58.917 50.000 12.31 0.00 37.40 3.41
321 323 3.722082 CGAGTACTTTGACTGCATTTCGC 60.722 47.826 0.00 0.00 42.89 4.70
331 333 2.764314 GCATTTCGCTGGACGCCAT 61.764 57.895 0.00 0.00 43.23 4.40
332 334 1.063006 CATTTCGCTGGACGCCATG 59.937 57.895 0.00 0.00 43.23 3.66
339 341 1.450848 CTGGACGCCATGCTCACAT 60.451 57.895 0.00 0.00 36.79 3.21
340 342 1.434622 CTGGACGCCATGCTCACATC 61.435 60.000 0.00 0.00 32.87 3.06
341 343 1.450134 GGACGCCATGCTCACATCA 60.450 57.895 0.00 0.00 32.87 3.07
371 373 3.195002 ACATGCGTTCATCGGCCG 61.195 61.111 22.12 22.12 40.26 6.13
409 411 1.177401 GGCAACTAAAGCTTCCCCTG 58.823 55.000 0.00 0.00 0.00 4.45
420 422 1.721664 CTTCCCCTGCATGCGATGTG 61.722 60.000 14.09 0.27 0.00 3.21
426 428 0.025898 CTGCATGCGATGTGACTTCG 59.974 55.000 14.09 15.41 39.55 3.79
438 440 2.963101 TGTGACTTCGAAGAGGAGGAAA 59.037 45.455 31.08 5.73 38.43 3.13
442 444 4.239304 GACTTCGAAGAGGAGGAAAAGTC 58.761 47.826 31.08 10.71 38.43 3.01
451 453 7.523380 CGAAGAGGAGGAAAAGTCAGTAGTTTA 60.523 40.741 0.00 0.00 0.00 2.01
464 466 5.922544 GTCAGTAGTTTAGCAGAAACGGTTA 59.077 40.000 8.18 0.00 35.42 2.85
556 561 3.486383 GAAATATTGAGGCGGGGATTGA 58.514 45.455 0.00 0.00 0.00 2.57
557 562 3.814504 AATATTGAGGCGGGGATTGAT 57.185 42.857 0.00 0.00 0.00 2.57
610 615 4.157472 TGAAACACACATGTCTTTTCTGCA 59.843 37.500 17.80 0.00 38.45 4.41
619 624 7.436080 ACACATGTCTTTTCTGCACAATAAAAG 59.564 33.333 0.00 10.44 40.13 2.27
661 666 2.555325 CAGCCAATGCGGTCATATGAAT 59.445 45.455 7.07 0.00 44.33 2.57
663 668 3.005050 AGCCAATGCGGTCATATGAATTG 59.995 43.478 16.16 16.16 44.33 2.32
667 672 4.924305 ATGCGGTCATATGAATTGCTTT 57.076 36.364 19.67 9.45 0.00 3.51
695 700 9.221933 TCTGTAAAGAAATATAAAAGCGTGGAA 57.778 29.630 0.00 0.00 0.00 3.53
704 709 8.974060 AATATAAAAGCGTGGAAGAGGATTTA 57.026 30.769 0.00 0.00 28.32 1.40
705 710 9.574516 AATATAAAAGCGTGGAAGAGGATTTAT 57.425 29.630 0.00 0.00 28.32 1.40
714 719 4.141620 TGGAAGAGGATTTATGGCTCTCAC 60.142 45.833 0.00 0.00 0.00 3.51
727 962 2.279741 GCTCTCACGTGCATCCATTTA 58.720 47.619 11.67 0.00 0.00 1.40
743 978 6.582677 TCCATTTACCACGAAAATGAACAT 57.417 33.333 9.50 0.00 43.79 2.71
748 983 2.962421 ACCACGAAAATGAACATGGGTT 59.038 40.909 0.00 0.00 40.76 4.11
753 988 5.401079 CACGAAAATGAACATGGGTTTACAC 59.599 40.000 0.00 0.00 37.36 2.90
825 1077 8.076178 GCTATTTTTATATAGGGTTGTGTGCTG 58.924 37.037 0.00 0.00 0.00 4.41
833 1085 4.514585 TTGTGTGCTGCCCGGGTT 62.515 61.111 24.63 0.00 0.00 4.11
864 1116 2.396590 TTCCCAGCGTTTAGATCACC 57.603 50.000 0.00 0.00 0.00 4.02
977 1231 1.277557 TGCCTCTCCTTGCTTCTCTTC 59.722 52.381 0.00 0.00 0.00 2.87
978 1232 1.406751 GCCTCTCCTTGCTTCTCTTCC 60.407 57.143 0.00 0.00 0.00 3.46
979 1233 1.209261 CCTCTCCTTGCTTCTCTTCCC 59.791 57.143 0.00 0.00 0.00 3.97
1015 1269 3.916359 TTATAATGCAACCCGTCTCCA 57.084 42.857 0.00 0.00 0.00 3.86
1060 1314 0.111089 GCAAAGTGACGAAGAGCACG 60.111 55.000 0.00 0.00 40.10 5.34
1264 1518 3.704381 CTGGAAGGAGAGACGAACG 57.296 57.895 0.00 0.00 0.00 3.95
1359 1613 2.647297 GACTTCGTCCCGTTCCGT 59.353 61.111 0.00 0.00 0.00 4.69
1438 1699 2.660612 CCGGCGGTTGTTGACGTAC 61.661 63.158 19.97 0.00 0.00 3.67
1640 1901 1.684391 TCATCCGGGGCGAGAAGAA 60.684 57.895 0.00 0.00 0.00 2.52
1666 1927 3.649277 GATGAGCACGGTGGCGACT 62.649 63.158 10.60 0.00 39.27 4.18
1835 2096 1.344438 CACTGAGGTGAAGGTGCAGTA 59.656 52.381 0.00 0.00 45.61 2.74
1908 2190 4.470462 CTGTGTTGTCTTTGCTTATCTGC 58.530 43.478 0.00 0.00 0.00 4.26
1912 2194 2.766313 TGTCTTTGCTTATCTGCGTGT 58.234 42.857 0.00 0.00 35.36 4.49
1929 2211 2.410392 CGTGTATTGTGTACGTGTGCAT 59.590 45.455 0.00 0.00 33.48 3.96
2015 2309 1.667724 GATGTGAGGGCATCTTCAACG 59.332 52.381 0.00 0.00 41.35 4.10
2022 2316 1.244019 GGCATCTTCAACGGCAACCT 61.244 55.000 0.00 0.00 0.00 3.50
2028 2322 4.759516 TCTTCAACGGCAACCTAATTTC 57.240 40.909 0.00 0.00 0.00 2.17
2030 2324 3.149005 TCAACGGCAACCTAATTTCCT 57.851 42.857 0.00 0.00 0.00 3.36
2031 2325 3.078837 TCAACGGCAACCTAATTTCCTC 58.921 45.455 0.00 0.00 0.00 3.71
2032 2326 2.124277 ACGGCAACCTAATTTCCTCC 57.876 50.000 0.00 0.00 0.00 4.30
2033 2327 1.353022 ACGGCAACCTAATTTCCTCCA 59.647 47.619 0.00 0.00 0.00 3.86
2034 2328 1.743394 CGGCAACCTAATTTCCTCCAC 59.257 52.381 0.00 0.00 0.00 4.02
2035 2329 2.100197 GGCAACCTAATTTCCTCCACC 58.900 52.381 0.00 0.00 0.00 4.61
2036 2330 2.291605 GGCAACCTAATTTCCTCCACCT 60.292 50.000 0.00 0.00 0.00 4.00
2037 2331 3.053917 GGCAACCTAATTTCCTCCACCTA 60.054 47.826 0.00 0.00 0.00 3.08
2038 2332 4.569015 GGCAACCTAATTTCCTCCACCTAA 60.569 45.833 0.00 0.00 0.00 2.69
2039 2333 5.201243 GCAACCTAATTTCCTCCACCTAAT 58.799 41.667 0.00 0.00 0.00 1.73
2040 2334 5.656859 GCAACCTAATTTCCTCCACCTAATT 59.343 40.000 0.00 0.00 0.00 1.40
2041 2335 6.154534 GCAACCTAATTTCCTCCACCTAATTT 59.845 38.462 0.00 0.00 0.00 1.82
2042 2336 7.310423 GCAACCTAATTTCCTCCACCTAATTTT 60.310 37.037 0.00 0.00 0.00 1.82
2043 2337 7.956328 ACCTAATTTCCTCCACCTAATTTTC 57.044 36.000 0.00 0.00 0.00 2.29
2044 2338 7.709601 ACCTAATTTCCTCCACCTAATTTTCT 58.290 34.615 0.00 0.00 0.00 2.52
2045 2339 7.834681 ACCTAATTTCCTCCACCTAATTTTCTC 59.165 37.037 0.00 0.00 0.00 2.87
2046 2340 7.285629 CCTAATTTCCTCCACCTAATTTTCTCC 59.714 40.741 0.00 0.00 0.00 3.71
2047 2341 5.860648 TTTCCTCCACCTAATTTTCTCCT 57.139 39.130 0.00 0.00 0.00 3.69
2048 2342 5.437191 TTCCTCCACCTAATTTTCTCCTC 57.563 43.478 0.00 0.00 0.00 3.71
2049 2343 4.435137 TCCTCCACCTAATTTTCTCCTCA 58.565 43.478 0.00 0.00 0.00 3.86
2050 2344 4.225267 TCCTCCACCTAATTTTCTCCTCAC 59.775 45.833 0.00 0.00 0.00 3.51
2051 2345 4.184629 CTCCACCTAATTTTCTCCTCACG 58.815 47.826 0.00 0.00 0.00 4.35
2052 2346 3.835978 TCCACCTAATTTTCTCCTCACGA 59.164 43.478 0.00 0.00 0.00 4.35
2053 2347 4.285003 TCCACCTAATTTTCTCCTCACGAA 59.715 41.667 0.00 0.00 0.00 3.85
2054 2348 5.045869 TCCACCTAATTTTCTCCTCACGAAT 60.046 40.000 0.00 0.00 0.00 3.34
2055 2349 5.648092 CCACCTAATTTTCTCCTCACGAATT 59.352 40.000 0.00 0.00 0.00 2.17
2056 2350 6.403636 CCACCTAATTTTCTCCTCACGAATTG 60.404 42.308 0.00 0.00 0.00 2.32
2057 2351 6.371548 CACCTAATTTTCTCCTCACGAATTGA 59.628 38.462 0.00 0.00 0.00 2.57
2064 2358 3.489636 TCACGAATTGAGGGGGCA 58.510 55.556 0.00 0.00 0.00 5.36
2065 2359 1.998530 TCACGAATTGAGGGGGCAT 59.001 52.632 0.00 0.00 0.00 4.40
2066 2360 0.107214 TCACGAATTGAGGGGGCATC 60.107 55.000 0.00 0.00 0.00 3.91
2067 2361 1.103398 CACGAATTGAGGGGGCATCC 61.103 60.000 0.00 0.00 0.00 3.51
2068 2362 1.281925 ACGAATTGAGGGGGCATCCT 61.282 55.000 0.00 0.00 40.43 3.24
2074 2368 3.411517 AGGGGGCATCCTCAACGG 61.412 66.667 0.00 0.00 35.43 4.44
2076 2370 4.424711 GGGGCATCCTCAACGGCA 62.425 66.667 0.00 0.00 0.00 5.69
2077 2371 2.361104 GGGCATCCTCAACGGCAA 60.361 61.111 0.00 0.00 0.00 4.52
2078 2372 2.700773 GGGCATCCTCAACGGCAAC 61.701 63.158 0.00 0.00 0.00 4.17
2079 2373 1.675641 GGCATCCTCAACGGCAACT 60.676 57.895 0.00 0.00 0.00 3.16
2080 2374 1.244019 GGCATCCTCAACGGCAACTT 61.244 55.000 0.00 0.00 0.00 2.66
2081 2375 1.448985 GCATCCTCAACGGCAACTTA 58.551 50.000 0.00 0.00 0.00 2.24
2082 2376 1.398390 GCATCCTCAACGGCAACTTAG 59.602 52.381 0.00 0.00 0.00 2.18
2083 2377 2.699954 CATCCTCAACGGCAACTTAGT 58.300 47.619 0.00 0.00 0.00 2.24
2084 2378 2.922740 TCCTCAACGGCAACTTAGTT 57.077 45.000 0.00 0.00 0.00 2.24
2085 2379 3.202829 TCCTCAACGGCAACTTAGTTT 57.797 42.857 0.00 0.00 0.00 2.66
2086 2380 3.547746 TCCTCAACGGCAACTTAGTTTT 58.452 40.909 0.00 0.00 0.00 2.43
2087 2381 3.562557 TCCTCAACGGCAACTTAGTTTTC 59.437 43.478 0.00 0.00 0.00 2.29
2088 2382 3.564225 CCTCAACGGCAACTTAGTTTTCT 59.436 43.478 0.00 0.00 0.00 2.52
2089 2383 4.319549 CCTCAACGGCAACTTAGTTTTCTC 60.320 45.833 0.00 0.00 0.00 2.87
2090 2384 3.562557 TCAACGGCAACTTAGTTTTCTCC 59.437 43.478 0.00 0.00 0.00 3.71
2091 2385 3.487120 ACGGCAACTTAGTTTTCTCCT 57.513 42.857 0.00 0.00 0.00 3.69
2092 2386 3.400255 ACGGCAACTTAGTTTTCTCCTC 58.600 45.455 0.00 0.00 0.00 3.71
2093 2387 2.412089 CGGCAACTTAGTTTTCTCCTCG 59.588 50.000 0.00 0.00 0.00 4.63
2094 2388 2.159824 GGCAACTTAGTTTTCTCCTCGC 59.840 50.000 0.00 0.00 0.00 5.03
2095 2389 2.159827 GCAACTTAGTTTTCTCCTCGCG 60.160 50.000 0.00 0.00 0.00 5.87
2096 2390 3.314553 CAACTTAGTTTTCTCCTCGCGA 58.685 45.455 9.26 9.26 0.00 5.87
2097 2391 3.655276 ACTTAGTTTTCTCCTCGCGAA 57.345 42.857 11.33 0.00 0.00 4.70
2098 2392 4.189639 ACTTAGTTTTCTCCTCGCGAAT 57.810 40.909 11.33 0.00 0.00 3.34
2099 2393 4.566987 ACTTAGTTTTCTCCTCGCGAATT 58.433 39.130 11.33 0.00 0.00 2.17
2100 2394 4.389077 ACTTAGTTTTCTCCTCGCGAATTG 59.611 41.667 11.33 1.43 0.00 2.32
2101 2395 3.040147 AGTTTTCTCCTCGCGAATTGA 57.960 42.857 11.33 6.37 0.00 2.57
2102 2396 2.996621 AGTTTTCTCCTCGCGAATTGAG 59.003 45.455 11.33 16.09 0.00 3.02
2107 2401 4.910956 CTCGCGAATTGAGGACCA 57.089 55.556 11.33 0.00 0.00 4.02
2108 2402 2.670635 CTCGCGAATTGAGGACCAG 58.329 57.895 11.33 0.00 0.00 4.00
2109 2403 0.108615 CTCGCGAATTGAGGACCAGT 60.109 55.000 11.33 0.00 0.00 4.00
2110 2404 0.108804 TCGCGAATTGAGGACCAGTC 60.109 55.000 6.20 0.00 0.00 3.51
2119 2413 3.340789 GGACCAGTCCGCAAACAC 58.659 61.111 0.05 0.00 40.36 3.32
2120 2414 2.604174 GGACCAGTCCGCAAACACG 61.604 63.158 0.05 0.00 40.36 4.49
2121 2415 1.593209 GACCAGTCCGCAAACACGA 60.593 57.895 0.00 0.00 34.06 4.35
2122 2416 1.153329 ACCAGTCCGCAAACACGAA 60.153 52.632 0.00 0.00 34.06 3.85
2123 2417 0.534203 ACCAGTCCGCAAACACGAAT 60.534 50.000 0.00 0.00 34.06 3.34
2124 2418 0.591170 CCAGTCCGCAAACACGAATT 59.409 50.000 0.00 0.00 34.06 2.17
2125 2419 1.399727 CCAGTCCGCAAACACGAATTC 60.400 52.381 0.00 0.00 34.06 2.17
2126 2420 0.511221 AGTCCGCAAACACGAATTCG 59.489 50.000 25.64 25.64 46.33 3.34
2127 2421 0.509499 GTCCGCAAACACGAATTCGA 59.491 50.000 33.05 5.40 43.02 3.71
2128 2422 1.070443 GTCCGCAAACACGAATTCGAA 60.070 47.619 33.05 0.00 43.02 3.71
2129 2423 1.193650 TCCGCAAACACGAATTCGAAG 59.806 47.619 33.05 24.77 43.02 3.79
2130 2424 1.591248 CGCAAACACGAATTCGAAGG 58.409 50.000 33.05 22.24 43.02 3.46
2131 2425 1.070175 CGCAAACACGAATTCGAAGGT 60.070 47.619 33.05 22.84 43.02 3.50
2132 2426 2.571206 GCAAACACGAATTCGAAGGTC 58.429 47.619 33.05 13.50 43.02 3.85
2133 2427 2.223377 GCAAACACGAATTCGAAGGTCT 59.777 45.455 33.05 12.61 43.02 3.85
2134 2428 3.664537 GCAAACACGAATTCGAAGGTCTC 60.665 47.826 33.05 14.42 43.02 3.36
2135 2429 3.662247 AACACGAATTCGAAGGTCTCT 57.338 42.857 33.05 6.17 43.02 3.10
2136 2430 3.219052 ACACGAATTCGAAGGTCTCTC 57.781 47.619 33.05 0.00 43.02 3.20
2137 2431 2.557056 ACACGAATTCGAAGGTCTCTCA 59.443 45.455 33.05 0.00 43.02 3.27
2138 2432 3.005472 ACACGAATTCGAAGGTCTCTCAA 59.995 43.478 33.05 0.00 43.02 3.02
2139 2433 4.177026 CACGAATTCGAAGGTCTCTCAAT 58.823 43.478 33.05 3.85 43.02 2.57
2140 2434 4.266502 CACGAATTCGAAGGTCTCTCAATC 59.733 45.833 33.05 0.00 43.02 2.67
2141 2435 3.483922 CGAATTCGAAGGTCTCTCAATCG 59.516 47.826 23.29 0.00 43.02 3.34
2142 2436 2.279582 TTCGAAGGTCTCTCAATCGC 57.720 50.000 0.00 0.00 33.76 4.58
2143 2437 1.173913 TCGAAGGTCTCTCAATCGCA 58.826 50.000 0.00 0.00 33.76 5.10
2144 2438 1.544246 TCGAAGGTCTCTCAATCGCAA 59.456 47.619 0.00 0.00 33.76 4.85
2145 2439 2.029380 TCGAAGGTCTCTCAATCGCAAA 60.029 45.455 0.00 0.00 33.76 3.68
2146 2440 2.092838 CGAAGGTCTCTCAATCGCAAAC 59.907 50.000 0.00 0.00 0.00 2.93
2147 2441 2.839486 AGGTCTCTCAATCGCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
2148 2442 3.126001 AGGTCTCTCAATCGCAAACAA 57.874 42.857 0.00 0.00 0.00 2.83
2149 2443 3.476552 AGGTCTCTCAATCGCAAACAAA 58.523 40.909 0.00 0.00 0.00 2.83
2150 2444 4.074970 AGGTCTCTCAATCGCAAACAAAT 58.925 39.130 0.00 0.00 0.00 2.32
2151 2445 4.083110 AGGTCTCTCAATCGCAAACAAATG 60.083 41.667 0.00 0.00 0.00 2.32
2152 2446 4.320494 GGTCTCTCAATCGCAAACAAATGT 60.320 41.667 0.00 0.00 0.00 2.71
2153 2447 5.215160 GTCTCTCAATCGCAAACAAATGTT 58.785 37.500 0.00 0.00 40.50 2.71
2154 2448 5.116074 GTCTCTCAATCGCAAACAAATGTTG 59.884 40.000 0.00 0.00 38.44 3.33
2155 2449 3.735240 TCTCAATCGCAAACAAATGTTGC 59.265 39.130 0.00 5.34 38.44 4.17
2156 2450 3.715495 TCAATCGCAAACAAATGTTGCT 58.285 36.364 7.47 0.00 38.44 3.91
2157 2451 4.118410 TCAATCGCAAACAAATGTTGCTT 58.882 34.783 7.47 0.00 38.44 3.91
2158 2452 4.208873 TCAATCGCAAACAAATGTTGCTTC 59.791 37.500 7.47 0.85 38.44 3.86
2159 2453 3.156511 TCGCAAACAAATGTTGCTTCA 57.843 38.095 7.47 0.00 38.44 3.02
2160 2454 3.114809 TCGCAAACAAATGTTGCTTCAG 58.885 40.909 7.47 0.00 38.44 3.02
2161 2455 2.347846 CGCAAACAAATGTTGCTTCAGC 60.348 45.455 7.47 0.00 38.44 4.26
2162 2456 2.867975 GCAAACAAATGTTGCTTCAGCT 59.132 40.909 0.00 0.00 42.66 4.24
2163 2457 3.310501 GCAAACAAATGTTGCTTCAGCTT 59.689 39.130 0.00 0.00 42.66 3.74
2164 2458 4.201841 GCAAACAAATGTTGCTTCAGCTTT 60.202 37.500 0.00 0.00 42.66 3.51
2165 2459 5.260140 CAAACAAATGTTGCTTCAGCTTTG 58.740 37.500 0.00 8.82 42.66 2.77
2166 2460 4.389890 ACAAATGTTGCTTCAGCTTTGA 57.610 36.364 14.73 0.00 42.66 2.69
2167 2461 4.114794 ACAAATGTTGCTTCAGCTTTGAC 58.885 39.130 14.73 4.16 42.66 3.18
2168 2462 2.693797 ATGTTGCTTCAGCTTTGACG 57.306 45.000 0.00 0.00 42.66 4.35
2169 2463 1.662517 TGTTGCTTCAGCTTTGACGA 58.337 45.000 0.00 0.00 42.66 4.20
2170 2464 1.330521 TGTTGCTTCAGCTTTGACGAC 59.669 47.619 0.00 0.00 42.66 4.34
2171 2465 0.944386 TTGCTTCAGCTTTGACGACC 59.056 50.000 0.00 0.00 42.66 4.79
2172 2466 0.179059 TGCTTCAGCTTTGACGACCA 60.179 50.000 0.00 0.00 42.66 4.02
2173 2467 0.514691 GCTTCAGCTTTGACGACCAG 59.485 55.000 0.00 0.00 38.21 4.00
2174 2468 0.514691 CTTCAGCTTTGACGACCAGC 59.485 55.000 0.00 0.00 0.00 4.85
2175 2469 0.106708 TTCAGCTTTGACGACCAGCT 59.893 50.000 3.40 3.40 45.02 4.24
2176 2470 4.368391 AGCTTTGACGACCAGCTG 57.632 55.556 6.78 6.78 42.46 4.24
2177 2471 1.302033 AGCTTTGACGACCAGCTGG 60.302 57.895 31.60 31.60 42.46 4.85
2178 2472 1.301716 GCTTTGACGACCAGCTGGA 60.302 57.895 39.19 13.98 38.94 3.86
2179 2473 0.884704 GCTTTGACGACCAGCTGGAA 60.885 55.000 39.19 19.55 38.94 3.53
2180 2474 1.813513 CTTTGACGACCAGCTGGAAT 58.186 50.000 39.19 22.56 38.94 3.01
2181 2475 1.734465 CTTTGACGACCAGCTGGAATC 59.266 52.381 39.19 28.59 38.94 2.52
2182 2476 0.684535 TTGACGACCAGCTGGAATCA 59.315 50.000 39.19 30.58 38.94 2.57
2183 2477 0.904649 TGACGACCAGCTGGAATCAT 59.095 50.000 39.19 16.27 38.94 2.45
2184 2478 2.107366 TGACGACCAGCTGGAATCATA 58.893 47.619 39.19 16.84 38.94 2.15
2185 2479 2.700371 TGACGACCAGCTGGAATCATAT 59.300 45.455 39.19 15.22 38.94 1.78
2186 2480 3.243873 TGACGACCAGCTGGAATCATATC 60.244 47.826 39.19 21.95 38.94 1.63
2187 2481 2.700371 ACGACCAGCTGGAATCATATCA 59.300 45.455 39.19 0.00 38.94 2.15
2188 2482 3.134623 ACGACCAGCTGGAATCATATCAA 59.865 43.478 39.19 0.00 38.94 2.57
2189 2483 4.202398 ACGACCAGCTGGAATCATATCAAT 60.202 41.667 39.19 12.10 38.94 2.57
2190 2484 4.391216 CGACCAGCTGGAATCATATCAATC 59.609 45.833 39.19 19.25 38.94 2.67
2191 2485 5.311265 GACCAGCTGGAATCATATCAATCA 58.689 41.667 39.19 0.00 38.94 2.57
2192 2486 5.698104 ACCAGCTGGAATCATATCAATCAA 58.302 37.500 39.19 0.00 38.94 2.57
2193 2487 5.768662 ACCAGCTGGAATCATATCAATCAAG 59.231 40.000 39.19 6.06 38.94 3.02
2194 2488 6.002082 CCAGCTGGAATCATATCAATCAAGA 58.998 40.000 29.88 0.00 37.39 3.02
2195 2489 6.659668 CCAGCTGGAATCATATCAATCAAGAT 59.340 38.462 29.88 0.00 37.39 2.40
2196 2490 7.362142 CCAGCTGGAATCATATCAATCAAGATG 60.362 40.741 29.88 0.00 37.39 2.90
2197 2491 6.151312 AGCTGGAATCATATCAATCAAGATGC 59.849 38.462 0.00 0.00 0.00 3.91
2198 2492 6.072119 GCTGGAATCATATCAATCAAGATGCA 60.072 38.462 0.00 0.00 0.00 3.96
2199 2493 7.448748 TGGAATCATATCAATCAAGATGCAG 57.551 36.000 0.00 0.00 0.00 4.41
2200 2494 6.072119 TGGAATCATATCAATCAAGATGCAGC 60.072 38.462 0.00 0.00 0.00 5.25
2201 2495 5.899120 ATCATATCAATCAAGATGCAGCC 57.101 39.130 0.00 0.00 0.00 4.85
2202 2496 3.749609 TCATATCAATCAAGATGCAGCCG 59.250 43.478 0.00 0.00 0.00 5.52
2203 2497 1.315690 ATCAATCAAGATGCAGCCGG 58.684 50.000 0.00 0.00 0.00 6.13
2204 2498 0.035152 TCAATCAAGATGCAGCCGGT 60.035 50.000 1.90 0.00 0.00 5.28
2205 2499 0.813184 CAATCAAGATGCAGCCGGTT 59.187 50.000 1.90 0.00 0.00 4.44
2206 2500 1.203052 CAATCAAGATGCAGCCGGTTT 59.797 47.619 1.90 0.00 0.00 3.27
2207 2501 1.098050 ATCAAGATGCAGCCGGTTTC 58.902 50.000 1.90 0.00 0.00 2.78
2208 2502 1.135315 CAAGATGCAGCCGGTTTCG 59.865 57.895 1.90 0.00 0.00 3.46
2252 2546 6.770303 TCACATCAACAATCACCAAACTTAGA 59.230 34.615 0.00 0.00 0.00 2.10
2285 2579 9.612620 GGAATTCGTCTTATTTAATGCAATAGG 57.387 33.333 0.00 0.00 0.00 2.57
2356 2650 8.560355 TCGTTTTTCAAGAAATCTCCATATGA 57.440 30.769 3.65 0.00 0.00 2.15
2411 2705 6.267471 ACAATCAAATTTCTAGGCAAACCTCA 59.733 34.615 0.00 0.00 46.34 3.86
2456 2789 2.297033 GCAAAGGATCAACAAGAGGCAA 59.703 45.455 0.00 0.00 0.00 4.52
2467 2800 2.238521 CAAGAGGCAAACAAGGGCTAA 58.761 47.619 0.00 0.00 41.74 3.09
2582 2918 3.446442 AAGACTCCCCAACGTAGACTA 57.554 47.619 0.00 0.00 0.00 2.59
2630 2966 5.885449 AACCAAATCAATGGAGACCAAAA 57.115 34.783 0.00 0.00 43.54 2.44
2785 3131 4.695396 ACATTTCAAGCAAGCATGACAAA 58.305 34.783 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.902540 AGATCAAACACTACACAAGTTATTCA 57.097 30.769 0.00 0.00 35.76 2.57
2 3 9.216117 GGTAGATCAAACACTACACAAGTTATT 57.784 33.333 0.00 0.00 40.19 1.40
3 4 7.822822 GGGTAGATCAAACACTACACAAGTTAT 59.177 37.037 0.00 0.00 41.12 1.89
4 5 7.156673 GGGTAGATCAAACACTACACAAGTTA 58.843 38.462 0.00 0.00 41.12 2.24
5 6 5.995897 GGGTAGATCAAACACTACACAAGTT 59.004 40.000 0.00 0.00 41.12 2.66
6 7 5.548406 GGGTAGATCAAACACTACACAAGT 58.452 41.667 0.00 0.00 41.12 3.16
7 8 4.625742 CGGGTAGATCAAACACTACACAAG 59.374 45.833 0.00 0.00 41.41 3.16
8 9 4.039488 ACGGGTAGATCAAACACTACACAA 59.961 41.667 0.00 0.00 41.41 3.33
9 10 3.575256 ACGGGTAGATCAAACACTACACA 59.425 43.478 0.00 0.00 41.41 3.72
10 11 4.184079 ACGGGTAGATCAAACACTACAC 57.816 45.455 0.00 0.00 40.19 2.90
11 12 4.561938 CCAACGGGTAGATCAAACACTACA 60.562 45.833 0.00 0.00 40.19 2.74
12 13 3.930848 CCAACGGGTAGATCAAACACTAC 59.069 47.826 0.00 0.00 38.44 2.73
13 14 3.055675 CCCAACGGGTAGATCAAACACTA 60.056 47.826 0.00 0.00 38.25 2.74
14 15 2.290071 CCCAACGGGTAGATCAAACACT 60.290 50.000 0.00 0.00 38.25 3.55
15 16 2.081462 CCCAACGGGTAGATCAAACAC 58.919 52.381 0.00 0.00 38.25 3.32
16 17 2.483014 CCCAACGGGTAGATCAAACA 57.517 50.000 0.00 0.00 38.25 2.83
55 56 0.750850 CCGTACCCATACCTGACAGG 59.249 60.000 20.45 20.45 42.49 4.00
56 57 0.750850 CCCGTACCCATACCTGACAG 59.249 60.000 0.00 0.00 0.00 3.51
57 58 0.041535 ACCCGTACCCATACCTGACA 59.958 55.000 0.00 0.00 0.00 3.58
58 59 0.462789 CACCCGTACCCATACCTGAC 59.537 60.000 0.00 0.00 0.00 3.51
59 60 0.335705 TCACCCGTACCCATACCTGA 59.664 55.000 0.00 0.00 0.00 3.86
60 61 1.138266 CTTCACCCGTACCCATACCTG 59.862 57.143 0.00 0.00 0.00 4.00
61 62 1.273438 ACTTCACCCGTACCCATACCT 60.273 52.381 0.00 0.00 0.00 3.08
62 63 1.197812 ACTTCACCCGTACCCATACC 58.802 55.000 0.00 0.00 0.00 2.73
63 64 3.264947 GAAACTTCACCCGTACCCATAC 58.735 50.000 0.00 0.00 0.00 2.39
64 65 2.094078 CGAAACTTCACCCGTACCCATA 60.094 50.000 0.00 0.00 0.00 2.74
65 66 1.338389 CGAAACTTCACCCGTACCCAT 60.338 52.381 0.00 0.00 0.00 4.00
66 67 0.033781 CGAAACTTCACCCGTACCCA 59.966 55.000 0.00 0.00 0.00 4.51
67 68 0.033920 ACGAAACTTCACCCGTACCC 59.966 55.000 0.00 0.00 33.13 3.69
68 69 2.328473 GTACGAAACTTCACCCGTACC 58.672 52.381 11.43 0.00 46.56 3.34
70 71 1.272212 GGGTACGAAACTTCACCCGTA 59.728 52.381 3.03 0.00 41.24 4.02
71 72 0.033920 GGGTACGAAACTTCACCCGT 59.966 55.000 3.03 0.00 41.24 5.28
72 73 2.831597 GGGTACGAAACTTCACCCG 58.168 57.895 3.03 0.00 41.24 5.28
74 75 2.081462 CCATGGGTACGAAACTTCACC 58.919 52.381 2.85 0.00 0.00 4.02
75 76 3.048337 TCCATGGGTACGAAACTTCAC 57.952 47.619 13.02 0.00 0.00 3.18
76 77 3.992943 ATCCATGGGTACGAAACTTCA 57.007 42.857 13.02 0.00 0.00 3.02
77 78 3.800506 CGTATCCATGGGTACGAAACTTC 59.199 47.826 41.92 12.60 44.67 3.01
78 79 3.431207 CCGTATCCATGGGTACGAAACTT 60.431 47.826 44.56 9.29 44.67 2.66
79 80 2.101917 CCGTATCCATGGGTACGAAACT 59.898 50.000 44.56 10.51 44.67 2.66
80 81 2.476821 CCGTATCCATGGGTACGAAAC 58.523 52.381 44.56 20.04 44.67 2.78
81 82 1.413445 CCCGTATCCATGGGTACGAAA 59.587 52.381 44.56 14.03 45.06 3.46
82 83 1.042229 CCCGTATCCATGGGTACGAA 58.958 55.000 44.56 14.79 45.06 3.85
83 84 2.736197 CCCGTATCCATGGGTACGA 58.264 57.895 44.56 15.54 45.06 3.43
89 90 1.358152 ACCCATACCCGTATCCATGG 58.642 55.000 4.97 4.97 38.13 3.66
90 91 3.437213 TCTACCCATACCCGTATCCATG 58.563 50.000 0.00 0.00 0.00 3.66
91 92 3.839323 TCTACCCATACCCGTATCCAT 57.161 47.619 0.00 0.00 0.00 3.41
92 93 3.616343 TTCTACCCATACCCGTATCCA 57.384 47.619 0.00 0.00 0.00 3.41
93 94 5.494390 AAATTCTACCCATACCCGTATCC 57.506 43.478 0.00 0.00 0.00 2.59
94 95 6.293698 ACAAAATTCTACCCATACCCGTATC 58.706 40.000 0.00 0.00 0.00 2.24
95 96 6.256643 ACAAAATTCTACCCATACCCGTAT 57.743 37.500 0.00 0.00 0.00 3.06
96 97 5.697082 ACAAAATTCTACCCATACCCGTA 57.303 39.130 0.00 0.00 0.00 4.02
97 98 4.579647 ACAAAATTCTACCCATACCCGT 57.420 40.909 0.00 0.00 0.00 5.28
98 99 4.818005 GGTACAAAATTCTACCCATACCCG 59.182 45.833 0.00 0.00 0.00 5.28
106 107 7.608761 TGTAGTCAATGGGTACAAAATTCTACC 59.391 37.037 0.00 0.00 32.87 3.18
107 108 8.448615 GTGTAGTCAATGGGTACAAAATTCTAC 58.551 37.037 0.00 0.00 0.00 2.59
108 109 7.332430 CGTGTAGTCAATGGGTACAAAATTCTA 59.668 37.037 0.00 0.00 0.00 2.10
109 110 6.148811 CGTGTAGTCAATGGGTACAAAATTCT 59.851 38.462 0.00 0.00 0.00 2.40
110 111 6.311723 CGTGTAGTCAATGGGTACAAAATTC 58.688 40.000 0.00 0.00 0.00 2.17
111 112 5.182380 CCGTGTAGTCAATGGGTACAAAATT 59.818 40.000 0.00 0.00 0.00 1.82
112 113 4.698304 CCGTGTAGTCAATGGGTACAAAAT 59.302 41.667 0.00 0.00 0.00 1.82
113 114 4.066490 CCGTGTAGTCAATGGGTACAAAA 58.934 43.478 0.00 0.00 0.00 2.44
114 115 3.557475 CCCGTGTAGTCAATGGGTACAAA 60.557 47.826 0.00 0.00 37.00 2.83
115 116 2.027929 CCCGTGTAGTCAATGGGTACAA 60.028 50.000 0.00 0.00 37.00 2.41
116 117 1.551430 CCCGTGTAGTCAATGGGTACA 59.449 52.381 0.00 0.00 37.00 2.90
117 118 1.551883 ACCCGTGTAGTCAATGGGTAC 59.448 52.381 4.50 0.00 46.34 3.34
118 119 1.941377 ACCCGTGTAGTCAATGGGTA 58.059 50.000 4.50 0.00 46.34 3.69
119 120 2.768046 ACCCGTGTAGTCAATGGGT 58.232 52.632 0.30 0.30 44.66 4.51
120 121 2.484770 CCATACCCGTGTAGTCAATGGG 60.485 54.545 0.00 0.00 43.24 4.00
121 122 2.484770 CCCATACCCGTGTAGTCAATGG 60.485 54.545 0.00 0.00 0.00 3.16
122 123 2.169769 ACCCATACCCGTGTAGTCAATG 59.830 50.000 0.00 0.00 0.00 2.82
123 124 2.474112 ACCCATACCCGTGTAGTCAAT 58.526 47.619 0.00 0.00 0.00 2.57
124 125 1.941377 ACCCATACCCGTGTAGTCAA 58.059 50.000 0.00 0.00 0.00 3.18
125 126 2.824689 TACCCATACCCGTGTAGTCA 57.175 50.000 0.00 0.00 0.00 3.41
126 127 2.298163 CCATACCCATACCCGTGTAGTC 59.702 54.545 0.00 0.00 0.00 2.59
127 128 2.322658 CCATACCCATACCCGTGTAGT 58.677 52.381 0.00 0.00 0.00 2.73
128 129 2.322658 ACCATACCCATACCCGTGTAG 58.677 52.381 0.00 0.00 0.00 2.74
129 130 2.475339 ACCATACCCATACCCGTGTA 57.525 50.000 0.00 0.00 0.00 2.90
130 131 2.475339 TACCATACCCATACCCGTGT 57.525 50.000 0.00 0.00 0.00 4.49
131 132 3.670625 CAATACCATACCCATACCCGTG 58.329 50.000 0.00 0.00 0.00 4.94
132 133 2.039348 GCAATACCATACCCATACCCGT 59.961 50.000 0.00 0.00 0.00 5.28
133 134 2.304761 AGCAATACCATACCCATACCCG 59.695 50.000 0.00 0.00 0.00 5.28
134 135 3.587506 AGAGCAATACCATACCCATACCC 59.412 47.826 0.00 0.00 0.00 3.69
135 136 4.910458 AGAGCAATACCATACCCATACC 57.090 45.455 0.00 0.00 0.00 2.73
136 137 5.731591 GGTAGAGCAATACCATACCCATAC 58.268 45.833 11.42 0.00 44.04 2.39
138 139 4.910458 GGTAGAGCAATACCATACCCAT 57.090 45.455 11.42 0.00 44.04 4.00
140 141 3.697619 GGGTAGAGCAATACCATACCC 57.302 52.381 16.56 3.12 46.04 3.69
141 142 2.612221 GCGGGTAGAGCAATACCATACC 60.612 54.545 16.56 4.24 46.04 2.73
142 143 2.612221 GGCGGGTAGAGCAATACCATAC 60.612 54.545 16.56 7.14 46.04 2.39
143 144 1.621814 GGCGGGTAGAGCAATACCATA 59.378 52.381 16.56 0.00 46.04 2.74
144 145 0.396811 GGCGGGTAGAGCAATACCAT 59.603 55.000 16.56 0.00 46.04 3.55
145 146 1.692173 GGGCGGGTAGAGCAATACCA 61.692 60.000 16.56 0.00 46.04 3.25
146 147 1.070957 GGGCGGGTAGAGCAATACC 59.929 63.158 8.50 8.50 43.90 2.73
147 148 1.070957 GGGGCGGGTAGAGCAATAC 59.929 63.158 0.00 0.00 36.08 1.89
148 149 0.766674 ATGGGGCGGGTAGAGCAATA 60.767 55.000 0.00 0.00 36.08 1.90
149 150 0.766674 TATGGGGCGGGTAGAGCAAT 60.767 55.000 0.00 0.00 36.08 3.56
150 151 1.383386 TATGGGGCGGGTAGAGCAA 60.383 57.895 0.00 0.00 36.08 3.91
151 152 2.138179 GTATGGGGCGGGTAGAGCA 61.138 63.158 0.00 0.00 36.08 4.26
152 153 2.741747 GTATGGGGCGGGTAGAGC 59.258 66.667 0.00 0.00 0.00 4.09
153 154 0.763223 AAGGTATGGGGCGGGTAGAG 60.763 60.000 0.00 0.00 0.00 2.43
154 155 0.562177 TAAGGTATGGGGCGGGTAGA 59.438 55.000 0.00 0.00 0.00 2.59
155 156 0.683412 GTAAGGTATGGGGCGGGTAG 59.317 60.000 0.00 0.00 0.00 3.18
156 157 0.763986 GGTAAGGTATGGGGCGGGTA 60.764 60.000 0.00 0.00 0.00 3.69
157 158 2.074332 GGTAAGGTATGGGGCGGGT 61.074 63.158 0.00 0.00 0.00 5.28
158 159 2.826003 GGGTAAGGTATGGGGCGGG 61.826 68.421 0.00 0.00 0.00 6.13
159 160 1.423794 ATGGGTAAGGTATGGGGCGG 61.424 60.000 0.00 0.00 0.00 6.13
160 161 0.476771 AATGGGTAAGGTATGGGGCG 59.523 55.000 0.00 0.00 0.00 6.13
161 162 1.995376 CAATGGGTAAGGTATGGGGC 58.005 55.000 0.00 0.00 0.00 5.80
162 163 1.480498 GGCAATGGGTAAGGTATGGGG 60.480 57.143 0.00 0.00 0.00 4.96
163 164 1.216678 TGGCAATGGGTAAGGTATGGG 59.783 52.381 0.00 0.00 0.00 4.00
164 165 2.746279 TGGCAATGGGTAAGGTATGG 57.254 50.000 0.00 0.00 0.00 2.74
165 166 3.157087 GGATGGCAATGGGTAAGGTATG 58.843 50.000 0.00 0.00 0.00 2.39
166 167 3.063650 AGGATGGCAATGGGTAAGGTAT 58.936 45.455 0.00 0.00 0.00 2.73
167 168 2.498441 AGGATGGCAATGGGTAAGGTA 58.502 47.619 0.00 0.00 0.00 3.08
168 169 1.308877 AGGATGGCAATGGGTAAGGT 58.691 50.000 0.00 0.00 0.00 3.50
169 170 2.459555 AAGGATGGCAATGGGTAAGG 57.540 50.000 0.00 0.00 0.00 2.69
170 171 2.887152 GCTAAGGATGGCAATGGGTAAG 59.113 50.000 0.00 0.00 32.44 2.34
171 172 2.424234 GGCTAAGGATGGCAATGGGTAA 60.424 50.000 0.00 0.00 34.13 2.85
172 173 1.144913 GGCTAAGGATGGCAATGGGTA 59.855 52.381 0.00 0.00 34.13 3.69
173 174 0.106015 GGCTAAGGATGGCAATGGGT 60.106 55.000 0.00 0.00 34.13 4.51
174 175 1.174712 CGGCTAAGGATGGCAATGGG 61.175 60.000 0.00 0.00 34.13 4.00
175 176 0.179020 TCGGCTAAGGATGGCAATGG 60.179 55.000 0.00 0.00 34.13 3.16
176 177 1.202687 TCTCGGCTAAGGATGGCAATG 60.203 52.381 0.00 0.00 34.13 2.82
177 178 1.071385 CTCTCGGCTAAGGATGGCAAT 59.929 52.381 0.00 0.00 34.13 3.56
178 179 0.465705 CTCTCGGCTAAGGATGGCAA 59.534 55.000 0.00 0.00 34.13 4.52
179 180 0.397114 TCTCTCGGCTAAGGATGGCA 60.397 55.000 0.00 0.00 34.13 4.92
180 181 0.316841 CTCTCTCGGCTAAGGATGGC 59.683 60.000 0.00 0.00 0.00 4.40
181 182 1.885887 CTCTCTCTCGGCTAAGGATGG 59.114 57.143 0.00 0.00 0.00 3.51
182 183 2.582052 ACTCTCTCTCGGCTAAGGATG 58.418 52.381 0.00 0.00 0.00 3.51
183 184 3.117663 AGAACTCTCTCTCGGCTAAGGAT 60.118 47.826 0.00 0.00 0.00 3.24
184 185 2.240160 AGAACTCTCTCTCGGCTAAGGA 59.760 50.000 0.00 0.00 0.00 3.36
185 186 2.357637 CAGAACTCTCTCTCGGCTAAGG 59.642 54.545 0.00 0.00 0.00 2.69
186 187 2.357637 CCAGAACTCTCTCTCGGCTAAG 59.642 54.545 0.00 0.00 0.00 2.18
187 188 2.370349 CCAGAACTCTCTCTCGGCTAA 58.630 52.381 0.00 0.00 0.00 3.09
188 189 1.408961 CCCAGAACTCTCTCTCGGCTA 60.409 57.143 0.00 0.00 0.00 3.93
189 190 0.682855 CCCAGAACTCTCTCTCGGCT 60.683 60.000 0.00 0.00 0.00 5.52
190 191 0.681564 TCCCAGAACTCTCTCTCGGC 60.682 60.000 0.00 0.00 0.00 5.54
191 192 1.065053 TCTCCCAGAACTCTCTCTCGG 60.065 57.143 0.00 0.00 0.00 4.63
192 193 2.288666 CTCTCCCAGAACTCTCTCTCG 58.711 57.143 0.00 0.00 0.00 4.04
204 205 1.277580 ACTTCCATGCCCTCTCCCAG 61.278 60.000 0.00 0.00 0.00 4.45
228 229 1.891616 GTCTTCCTCGACCCACTCC 59.108 63.158 0.00 0.00 0.00 3.85
286 288 3.367646 AGTACTCGAGGGAGACATGAA 57.632 47.619 18.41 0.00 43.27 2.57
287 289 3.367646 AAGTACTCGAGGGAGACATGA 57.632 47.619 18.41 0.00 43.27 3.07
292 294 3.082548 CAGTCAAAGTACTCGAGGGAGA 58.917 50.000 18.41 2.91 43.27 3.71
321 323 1.434622 GATGTGAGCATGGCGTCCAG 61.435 60.000 4.90 0.00 36.75 3.86
331 333 1.817357 CTTGAAGGCTGATGTGAGCA 58.183 50.000 0.00 0.00 41.08 4.26
332 334 0.450983 GCTTGAAGGCTGATGTGAGC 59.549 55.000 0.00 0.00 38.34 4.26
339 341 1.302752 ATGTGCGCTTGAAGGCTGA 60.303 52.632 9.73 0.00 0.00 4.26
340 342 1.154093 CATGTGCGCTTGAAGGCTG 60.154 57.895 9.73 0.00 0.00 4.85
341 343 2.986306 GCATGTGCGCTTGAAGGCT 61.986 57.895 16.60 0.00 0.00 4.58
381 383 1.813178 GCTTTAGTTGCCTCCACTTCC 59.187 52.381 0.00 0.00 0.00 3.46
382 384 2.784347 AGCTTTAGTTGCCTCCACTTC 58.216 47.619 0.00 0.00 0.00 3.01
396 398 1.031571 CGCATGCAGGGGAAGCTTTA 61.032 55.000 19.57 0.00 0.00 1.85
409 411 0.721154 TTCGAAGTCACATCGCATGC 59.279 50.000 7.91 7.91 40.04 4.06
420 422 4.239304 GACTTTTCCTCCTCTTCGAAGTC 58.761 47.826 23.85 7.34 36.07 3.01
426 428 5.731957 ACTACTGACTTTTCCTCCTCTTC 57.268 43.478 0.00 0.00 0.00 2.87
438 440 4.989168 CCGTTTCTGCTAAACTACTGACTT 59.011 41.667 11.69 0.00 0.00 3.01
442 444 5.924825 AGTAACCGTTTCTGCTAAACTACTG 59.075 40.000 11.69 3.23 0.00 2.74
451 453 2.367567 TCAAGGAGTAACCGTTTCTGCT 59.632 45.455 6.16 6.16 44.74 4.24
496 501 3.614092 TGATTTCAAGCAGGATCAGGAC 58.386 45.455 0.00 0.00 0.00 3.85
497 502 4.305539 TTGATTTCAAGCAGGATCAGGA 57.694 40.909 0.00 0.00 30.92 3.86
498 503 6.896021 ATATTGATTTCAAGCAGGATCAGG 57.104 37.500 0.00 0.00 39.47 3.86
539 544 5.221441 CGATATATCAATCCCCGCCTCAATA 60.221 44.000 13.11 0.00 0.00 1.90
606 611 6.441274 AGACATGTGTTCTTTTATTGTGCAG 58.559 36.000 1.15 0.00 0.00 4.41
636 641 3.364441 GACCGCATTGGCTGTGCA 61.364 61.111 13.48 0.00 43.94 4.57
667 672 8.879759 CCACGCTTTTATATTTCTTTACAGAGA 58.120 33.333 0.00 0.00 0.00 3.10
686 691 3.545703 CCATAAATCCTCTTCCACGCTT 58.454 45.455 0.00 0.00 0.00 4.68
695 700 3.034635 ACGTGAGAGCCATAAATCCTCT 58.965 45.455 0.00 0.00 38.58 3.69
714 719 1.364721 TCGTGGTAAATGGATGCACG 58.635 50.000 0.00 0.00 36.13 5.34
727 962 2.593026 ACCCATGTTCATTTTCGTGGT 58.407 42.857 0.00 0.00 38.60 4.16
743 978 8.472007 AAAAATGAGTATTCAGTGTAAACCCA 57.528 30.769 0.00 0.00 36.61 4.51
816 1068 4.514585 AACCCGGGCAGCACACAA 62.515 61.111 24.08 0.00 0.00 3.33
819 1071 4.329545 GAGAACCCGGGCAGCACA 62.330 66.667 24.08 0.00 0.00 4.57
825 1077 3.140814 GCATTGGAGAACCCGGGC 61.141 66.667 24.08 4.85 37.93 6.13
833 1085 1.477553 GCTGGGAAATGCATTGGAGA 58.522 50.000 13.82 0.00 0.00 3.71
864 1116 2.350522 GCCCTATGAATATGGAGCGTG 58.649 52.381 0.00 0.00 0.00 5.34
1015 1269 1.151668 GTCGCTCTGCTTGAACACAT 58.848 50.000 0.00 0.00 0.00 3.21
1060 1314 2.666190 TGCTCGGTGAGTTGCAGC 60.666 61.111 0.00 0.00 41.53 5.25
1317 1571 1.371558 GTCTCTCCAAGGCCAACGT 59.628 57.895 5.01 0.00 0.00 3.99
1359 1613 1.063027 CGCTATGTACCGTTGACGAGA 59.937 52.381 4.91 0.00 43.02 4.04
1438 1699 2.108514 CCAGCCCTGCATGTACACG 61.109 63.158 0.00 0.00 0.00 4.49
1640 1901 2.362369 CCGTGCTCATCCTCCACCT 61.362 63.158 0.00 0.00 0.00 4.00
1835 2096 1.008079 GTGACCGACGGACGTTCTT 60.008 57.895 23.38 0.00 40.78 2.52
1908 2190 1.787731 TGCACACGTACACAATACACG 59.212 47.619 0.00 0.00 41.32 4.49
1912 2194 5.710613 CATACATGCACACGTACACAATA 57.289 39.130 0.00 0.00 0.00 1.90
1993 2278 0.548031 TGAAGATGCCCTCACATCCC 59.452 55.000 1.06 0.00 46.29 3.85
1994 2279 2.019984 GTTGAAGATGCCCTCACATCC 58.980 52.381 1.06 0.00 46.29 3.51
2000 2294 0.960364 TTGCCGTTGAAGATGCCCTC 60.960 55.000 0.00 0.00 0.00 4.30
2015 2309 2.100197 GGTGGAGGAAATTAGGTTGCC 58.900 52.381 0.00 0.00 35.48 4.52
2022 2316 7.939781 AGGAGAAAATTAGGTGGAGGAAATTA 58.060 34.615 0.00 0.00 0.00 1.40
2028 2322 4.518249 GTGAGGAGAAAATTAGGTGGAGG 58.482 47.826 0.00 0.00 0.00 4.30
2030 2324 3.835978 TCGTGAGGAGAAAATTAGGTGGA 59.164 43.478 0.00 0.00 0.00 4.02
2031 2325 4.202245 TCGTGAGGAGAAAATTAGGTGG 57.798 45.455 0.00 0.00 0.00 4.61
2032 2326 6.371548 TCAATTCGTGAGGAGAAAATTAGGTG 59.628 38.462 0.00 0.00 0.00 4.00
2033 2327 6.472887 TCAATTCGTGAGGAGAAAATTAGGT 58.527 36.000 0.00 0.00 0.00 3.08
2034 2328 6.985188 TCAATTCGTGAGGAGAAAATTAGG 57.015 37.500 0.00 0.00 0.00 2.69
2047 2341 0.107214 GATGCCCCCTCAATTCGTGA 60.107 55.000 0.00 0.00 34.17 4.35
2048 2342 1.103398 GGATGCCCCCTCAATTCGTG 61.103 60.000 0.00 0.00 0.00 4.35
2049 2343 1.227383 GGATGCCCCCTCAATTCGT 59.773 57.895 0.00 0.00 0.00 3.85
2050 2344 1.533711 AGGATGCCCCCTCAATTCG 59.466 57.895 0.00 0.00 34.66 3.34
2057 2351 3.411517 CCGTTGAGGATGCCCCCT 61.412 66.667 0.00 0.00 45.00 4.79
2059 2353 3.936772 TTGCCGTTGAGGATGCCCC 62.937 63.158 0.00 0.00 45.00 5.80
2060 2354 2.361104 TTGCCGTTGAGGATGCCC 60.361 61.111 0.00 0.00 45.00 5.36
2061 2355 1.244019 AAGTTGCCGTTGAGGATGCC 61.244 55.000 0.00 0.00 45.00 4.40
2062 2356 1.398390 CTAAGTTGCCGTTGAGGATGC 59.602 52.381 0.00 0.00 45.00 3.91
2063 2357 2.699954 ACTAAGTTGCCGTTGAGGATG 58.300 47.619 0.00 0.00 45.00 3.51
2064 2358 3.418684 AACTAAGTTGCCGTTGAGGAT 57.581 42.857 0.00 0.00 45.00 3.24
2065 2359 2.922740 AACTAAGTTGCCGTTGAGGA 57.077 45.000 0.00 0.00 45.00 3.71
2066 2360 3.564225 AGAAAACTAAGTTGCCGTTGAGG 59.436 43.478 0.00 0.00 44.97 3.86
2067 2361 4.319549 GGAGAAAACTAAGTTGCCGTTGAG 60.320 45.833 0.00 0.00 0.00 3.02
2068 2362 3.562557 GGAGAAAACTAAGTTGCCGTTGA 59.437 43.478 0.00 0.00 0.00 3.18
2069 2363 3.564225 AGGAGAAAACTAAGTTGCCGTTG 59.436 43.478 0.00 0.00 0.00 4.10
2070 2364 3.813724 GAGGAGAAAACTAAGTTGCCGTT 59.186 43.478 0.00 0.00 0.00 4.44
2071 2365 3.400255 GAGGAGAAAACTAAGTTGCCGT 58.600 45.455 0.00 0.00 0.00 5.68
2072 2366 2.412089 CGAGGAGAAAACTAAGTTGCCG 59.588 50.000 0.00 0.00 0.00 5.69
2073 2367 2.159824 GCGAGGAGAAAACTAAGTTGCC 59.840 50.000 0.00 0.00 0.00 4.52
2074 2368 2.159827 CGCGAGGAGAAAACTAAGTTGC 60.160 50.000 0.00 0.00 0.00 4.17
2075 2369 3.314553 TCGCGAGGAGAAAACTAAGTTG 58.685 45.455 3.71 0.00 0.00 3.16
2076 2370 3.655276 TCGCGAGGAGAAAACTAAGTT 57.345 42.857 3.71 0.00 0.00 2.66
2077 2371 3.655276 TTCGCGAGGAGAAAACTAAGT 57.345 42.857 9.59 0.00 0.00 2.24
2078 2372 4.625742 TCAATTCGCGAGGAGAAAACTAAG 59.374 41.667 9.59 0.00 0.00 2.18
2079 2373 4.562082 TCAATTCGCGAGGAGAAAACTAA 58.438 39.130 9.59 0.00 0.00 2.24
2080 2374 4.174009 CTCAATTCGCGAGGAGAAAACTA 58.826 43.478 22.38 0.83 0.00 2.24
2081 2375 2.996621 CTCAATTCGCGAGGAGAAAACT 59.003 45.455 22.38 0.00 0.00 2.66
2082 2376 3.375911 CTCAATTCGCGAGGAGAAAAC 57.624 47.619 22.38 0.00 0.00 2.43
2090 2384 0.108615 ACTGGTCCTCAATTCGCGAG 60.109 55.000 9.59 0.00 0.00 5.03
2091 2385 0.108804 GACTGGTCCTCAATTCGCGA 60.109 55.000 3.71 3.71 0.00 5.87
2092 2386 1.084370 GGACTGGTCCTCAATTCGCG 61.084 60.000 12.09 0.00 46.16 5.87
2093 2387 2.768834 GGACTGGTCCTCAATTCGC 58.231 57.895 12.09 0.00 46.16 4.70
2095 2389 1.610624 TTGCGGACTGGTCCTCAATTC 60.611 52.381 17.78 2.94 46.11 2.17
2096 2390 0.400213 TTGCGGACTGGTCCTCAATT 59.600 50.000 17.78 0.00 46.11 2.32
2097 2391 2.066340 TTGCGGACTGGTCCTCAAT 58.934 52.632 17.78 0.00 46.11 2.57
2102 2396 2.604174 CGTGTTTGCGGACTGGTCC 61.604 63.158 9.55 9.55 46.18 4.46
2103 2397 1.155424 TTCGTGTTTGCGGACTGGTC 61.155 55.000 0.00 0.00 0.00 4.02
2104 2398 0.534203 ATTCGTGTTTGCGGACTGGT 60.534 50.000 0.00 0.00 0.00 4.00
2105 2399 0.591170 AATTCGTGTTTGCGGACTGG 59.409 50.000 0.00 0.00 0.00 4.00
2106 2400 1.721489 CGAATTCGTGTTTGCGGACTG 60.721 52.381 19.67 0.00 34.11 3.51
2107 2401 0.511221 CGAATTCGTGTTTGCGGACT 59.489 50.000 19.67 0.00 34.11 3.85
2108 2402 0.509499 TCGAATTCGTGTTTGCGGAC 59.491 50.000 25.93 0.00 40.80 4.79
2109 2403 1.193650 CTTCGAATTCGTGTTTGCGGA 59.806 47.619 25.93 1.83 40.80 5.54
2110 2404 1.591248 CTTCGAATTCGTGTTTGCGG 58.409 50.000 25.93 6.31 40.80 5.69
2111 2405 1.070175 ACCTTCGAATTCGTGTTTGCG 60.070 47.619 25.93 10.89 40.80 4.85
2112 2406 2.223377 AGACCTTCGAATTCGTGTTTGC 59.777 45.455 25.93 12.94 40.80 3.68
2113 2407 3.741344 AGAGACCTTCGAATTCGTGTTTG 59.259 43.478 25.93 13.96 40.80 2.93
2114 2408 3.988517 GAGAGACCTTCGAATTCGTGTTT 59.011 43.478 25.93 16.51 40.80 2.83
2115 2409 3.005472 TGAGAGACCTTCGAATTCGTGTT 59.995 43.478 25.93 10.11 40.80 3.32
2116 2410 2.557056 TGAGAGACCTTCGAATTCGTGT 59.443 45.455 25.93 20.46 40.80 4.49
2117 2411 3.217599 TGAGAGACCTTCGAATTCGTG 57.782 47.619 25.93 19.00 40.80 4.35
2118 2412 3.936372 TTGAGAGACCTTCGAATTCGT 57.064 42.857 25.93 8.09 40.80 3.85
2119 2413 3.483922 CGATTGAGAGACCTTCGAATTCG 59.516 47.826 21.78 21.78 41.45 3.34
2120 2414 3.244111 GCGATTGAGAGACCTTCGAATTC 59.756 47.826 0.00 0.00 31.74 2.17
2121 2415 3.190874 GCGATTGAGAGACCTTCGAATT 58.809 45.455 0.00 0.00 31.74 2.17
2122 2416 2.166459 TGCGATTGAGAGACCTTCGAAT 59.834 45.455 0.00 0.00 31.74 3.34
2123 2417 1.544246 TGCGATTGAGAGACCTTCGAA 59.456 47.619 0.00 0.00 31.74 3.71
2124 2418 1.173913 TGCGATTGAGAGACCTTCGA 58.826 50.000 0.00 0.00 31.74 3.71
2125 2419 1.996292 TTGCGATTGAGAGACCTTCG 58.004 50.000 0.00 0.00 0.00 3.79
2126 2420 3.067106 TGTTTGCGATTGAGAGACCTTC 58.933 45.455 0.00 0.00 0.00 3.46
2127 2421 3.126001 TGTTTGCGATTGAGAGACCTT 57.874 42.857 0.00 0.00 0.00 3.50
2128 2422 2.839486 TGTTTGCGATTGAGAGACCT 57.161 45.000 0.00 0.00 0.00 3.85
2129 2423 3.896648 TTTGTTTGCGATTGAGAGACC 57.103 42.857 0.00 0.00 0.00 3.85
2130 2424 4.787598 ACATTTGTTTGCGATTGAGAGAC 58.212 39.130 0.00 0.00 0.00 3.36
2131 2425 5.214417 CAACATTTGTTTGCGATTGAGAGA 58.786 37.500 0.00 0.00 35.83 3.10
2132 2426 4.143473 GCAACATTTGTTTGCGATTGAGAG 60.143 41.667 0.00 0.00 35.83 3.20
2133 2427 3.735240 GCAACATTTGTTTGCGATTGAGA 59.265 39.130 0.00 0.00 35.83 3.27
2134 2428 3.737266 AGCAACATTTGTTTGCGATTGAG 59.263 39.130 1.64 0.00 37.24 3.02
2135 2429 3.715495 AGCAACATTTGTTTGCGATTGA 58.285 36.364 1.64 0.00 37.24 2.57
2136 2430 4.025896 TGAAGCAACATTTGTTTGCGATTG 60.026 37.500 1.64 0.00 37.24 2.67
2137 2431 4.118410 TGAAGCAACATTTGTTTGCGATT 58.882 34.783 1.64 0.00 37.24 3.34
2138 2432 3.715495 TGAAGCAACATTTGTTTGCGAT 58.285 36.364 1.64 0.00 37.24 4.58
2139 2433 3.114809 CTGAAGCAACATTTGTTTGCGA 58.885 40.909 1.64 0.00 37.24 5.10
2140 2434 2.347846 GCTGAAGCAACATTTGTTTGCG 60.348 45.455 0.00 0.00 41.59 4.85
2141 2435 2.867975 AGCTGAAGCAACATTTGTTTGC 59.132 40.909 4.90 0.00 45.16 3.68
2142 2436 5.063691 TCAAAGCTGAAGCAACATTTGTTTG 59.936 36.000 4.90 4.40 45.16 2.93
2143 2437 5.063817 GTCAAAGCTGAAGCAACATTTGTTT 59.936 36.000 4.90 0.00 45.16 2.83
2144 2438 4.567959 GTCAAAGCTGAAGCAACATTTGTT 59.432 37.500 4.90 0.00 45.16 2.83
2145 2439 4.114794 GTCAAAGCTGAAGCAACATTTGT 58.885 39.130 4.90 0.00 45.16 2.83
2146 2440 3.180980 CGTCAAAGCTGAAGCAACATTTG 59.819 43.478 4.90 6.73 45.16 2.32
2147 2441 3.066621 TCGTCAAAGCTGAAGCAACATTT 59.933 39.130 4.90 0.00 45.16 2.32
2148 2442 2.618241 TCGTCAAAGCTGAAGCAACATT 59.382 40.909 4.90 0.00 45.16 2.71
2149 2443 2.031682 GTCGTCAAAGCTGAAGCAACAT 60.032 45.455 4.90 0.00 45.16 2.71
2150 2444 1.330521 GTCGTCAAAGCTGAAGCAACA 59.669 47.619 4.90 0.00 45.16 3.33
2151 2445 1.334149 GGTCGTCAAAGCTGAAGCAAC 60.334 52.381 4.90 0.00 45.16 4.17
2152 2446 0.944386 GGTCGTCAAAGCTGAAGCAA 59.056 50.000 4.90 0.00 45.16 3.91
2153 2447 0.179059 TGGTCGTCAAAGCTGAAGCA 60.179 50.000 4.90 0.00 45.16 3.91
2154 2448 0.514691 CTGGTCGTCAAAGCTGAAGC 59.485 55.000 0.00 0.00 42.49 3.86
2155 2449 0.514691 GCTGGTCGTCAAAGCTGAAG 59.485 55.000 0.00 0.00 34.05 3.02
2156 2450 0.106708 AGCTGGTCGTCAAAGCTGAA 59.893 50.000 7.99 0.00 45.36 3.02
2157 2451 1.748403 AGCTGGTCGTCAAAGCTGA 59.252 52.632 7.99 0.00 45.36 4.26
2158 2452 4.368391 AGCTGGTCGTCAAAGCTG 57.632 55.556 7.99 0.00 45.36 4.24
2160 2454 0.884704 TTCCAGCTGGTCGTCAAAGC 60.885 55.000 31.58 0.00 37.20 3.51
2161 2455 1.734465 GATTCCAGCTGGTCGTCAAAG 59.266 52.381 31.58 3.44 36.34 2.77
2162 2456 1.071542 TGATTCCAGCTGGTCGTCAAA 59.928 47.619 31.58 18.00 36.34 2.69
2163 2457 0.684535 TGATTCCAGCTGGTCGTCAA 59.315 50.000 31.58 18.74 36.34 3.18
2164 2458 0.904649 ATGATTCCAGCTGGTCGTCA 59.095 50.000 31.58 28.91 36.34 4.35
2165 2459 2.890808 TATGATTCCAGCTGGTCGTC 57.109 50.000 31.58 24.96 36.34 4.20
2166 2460 2.700371 TGATATGATTCCAGCTGGTCGT 59.300 45.455 31.58 24.51 36.34 4.34
2167 2461 3.391506 TGATATGATTCCAGCTGGTCG 57.608 47.619 31.58 7.43 36.34 4.79
2168 2462 5.311265 TGATTGATATGATTCCAGCTGGTC 58.689 41.667 31.58 22.76 36.34 4.02
2169 2463 5.314718 TGATTGATATGATTCCAGCTGGT 57.685 39.130 31.58 14.66 36.34 4.00
2170 2464 6.002082 TCTTGATTGATATGATTCCAGCTGG 58.998 40.000 27.87 27.87 0.00 4.85
2171 2465 7.530863 CATCTTGATTGATATGATTCCAGCTG 58.469 38.462 6.78 6.78 0.00 4.24
2172 2466 6.151312 GCATCTTGATTGATATGATTCCAGCT 59.849 38.462 0.00 0.00 0.00 4.24
2173 2467 6.072119 TGCATCTTGATTGATATGATTCCAGC 60.072 38.462 0.00 0.00 0.00 4.85
2174 2468 7.448748 TGCATCTTGATTGATATGATTCCAG 57.551 36.000 0.00 0.00 0.00 3.86
2175 2469 6.072119 GCTGCATCTTGATTGATATGATTCCA 60.072 38.462 0.00 0.00 0.00 3.53
2176 2470 6.323266 GCTGCATCTTGATTGATATGATTCC 58.677 40.000 0.00 0.00 0.00 3.01
2177 2471 6.323266 GGCTGCATCTTGATTGATATGATTC 58.677 40.000 0.50 0.00 0.00 2.52
2178 2472 5.106277 CGGCTGCATCTTGATTGATATGATT 60.106 40.000 0.50 0.00 0.00 2.57
2179 2473 4.395231 CGGCTGCATCTTGATTGATATGAT 59.605 41.667 0.50 0.00 0.00 2.45
2180 2474 3.749609 CGGCTGCATCTTGATTGATATGA 59.250 43.478 0.50 0.00 0.00 2.15
2181 2475 3.119955 CCGGCTGCATCTTGATTGATATG 60.120 47.826 0.50 0.00 0.00 1.78
2182 2476 3.079578 CCGGCTGCATCTTGATTGATAT 58.920 45.455 0.50 0.00 0.00 1.63
2183 2477 2.158769 ACCGGCTGCATCTTGATTGATA 60.159 45.455 0.00 0.00 0.00 2.15
2184 2478 1.315690 CCGGCTGCATCTTGATTGAT 58.684 50.000 0.50 0.00 0.00 2.57
2185 2479 0.035152 ACCGGCTGCATCTTGATTGA 60.035 50.000 0.00 0.00 0.00 2.57
2186 2480 0.813184 AACCGGCTGCATCTTGATTG 59.187 50.000 0.00 0.00 0.00 2.67
2187 2481 1.474077 GAAACCGGCTGCATCTTGATT 59.526 47.619 0.00 0.00 0.00 2.57
2188 2482 1.098050 GAAACCGGCTGCATCTTGAT 58.902 50.000 0.00 0.00 0.00 2.57
2189 2483 1.298157 CGAAACCGGCTGCATCTTGA 61.298 55.000 0.00 0.00 0.00 3.02
2190 2484 1.135315 CGAAACCGGCTGCATCTTG 59.865 57.895 0.00 0.00 0.00 3.02
2191 2485 2.040544 CCGAAACCGGCTGCATCTT 61.041 57.895 0.00 0.00 40.66 2.40
2192 2486 2.436646 CCGAAACCGGCTGCATCT 60.437 61.111 0.00 0.00 40.66 2.90
2201 2495 1.664151 GTGATTTCCTAGCCGAAACCG 59.336 52.381 0.00 0.00 34.68 4.44
2202 2496 1.664151 CGTGATTTCCTAGCCGAAACC 59.336 52.381 0.00 0.00 34.68 3.27
2203 2497 2.613691 TCGTGATTTCCTAGCCGAAAC 58.386 47.619 0.00 0.00 34.68 2.78
2204 2498 3.259064 CTTCGTGATTTCCTAGCCGAAA 58.741 45.455 0.00 0.00 36.24 3.46
2205 2499 2.888594 CTTCGTGATTTCCTAGCCGAA 58.111 47.619 0.00 0.00 33.79 4.30
2206 2500 1.470979 GCTTCGTGATTTCCTAGCCGA 60.471 52.381 0.00 0.00 0.00 5.54
2207 2501 0.931005 GCTTCGTGATTTCCTAGCCG 59.069 55.000 0.00 0.00 0.00 5.52
2208 2502 2.205911 GAGCTTCGTGATTTCCTAGCC 58.794 52.381 0.00 0.00 0.00 3.93
2209 2503 2.605366 GTGAGCTTCGTGATTTCCTAGC 59.395 50.000 0.00 0.00 0.00 3.42
2210 2504 3.849911 TGTGAGCTTCGTGATTTCCTAG 58.150 45.455 0.00 0.00 0.00 3.02
2211 2505 3.953712 TGTGAGCTTCGTGATTTCCTA 57.046 42.857 0.00 0.00 0.00 2.94
2212 2506 2.839486 TGTGAGCTTCGTGATTTCCT 57.161 45.000 0.00 0.00 0.00 3.36
2213 2507 3.002791 TGATGTGAGCTTCGTGATTTCC 58.997 45.455 0.00 0.00 0.00 3.13
2214 2508 4.083855 TGTTGATGTGAGCTTCGTGATTTC 60.084 41.667 0.00 0.00 0.00 2.17
2215 2509 3.814842 TGTTGATGTGAGCTTCGTGATTT 59.185 39.130 0.00 0.00 0.00 2.17
2216 2510 3.402110 TGTTGATGTGAGCTTCGTGATT 58.598 40.909 0.00 0.00 0.00 2.57
2217 2511 3.044235 TGTTGATGTGAGCTTCGTGAT 57.956 42.857 0.00 0.00 0.00 3.06
2277 2571 5.651576 TGTGATTGTTCATAAGCCTATTGCA 59.348 36.000 0.00 0.00 36.93 4.08
2337 2631 9.060347 GCTTACATCATATGGAGATTTCTTGAA 57.940 33.333 2.13 0.00 33.60 2.69
2356 2650 4.878397 GCCTACTCTTGATTGTGCTTACAT 59.122 41.667 0.00 0.00 0.00 2.29
2428 2722 5.569355 TCTTGTTGATCCTTTGCATCCTAA 58.431 37.500 0.00 0.00 0.00 2.69
2615 2951 4.705110 TCAGAGTTTTGGTCTCCATTGA 57.295 40.909 0.00 0.00 31.53 2.57
2630 2966 6.051717 CGATCCTTTCAATTGGTATCAGAGT 58.948 40.000 5.42 0.00 0.00 3.24
2723 3062 5.889289 ACTTGTGCTAAAACTCCACCTTAAA 59.111 36.000 0.00 0.00 0.00 1.52
2785 3131 4.408182 ACTTTCCGCTGCTCATATACTT 57.592 40.909 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.