Multiple sequence alignment - TraesCS6D01G168900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G168900 chr6D 100.000 2533 0 0 1 2533 154358424 154360956 0.000000e+00 4678.0
1 TraesCS6D01G168900 chr6D 82.292 672 68 11 1 668 401136899 401136275 3.710000e-148 534.0
2 TraesCS6D01G168900 chr6A 91.399 1523 55 31 725 2199 207762675 207764169 0.000000e+00 2017.0
3 TraesCS6D01G168900 chr6A 89.362 141 15 0 2393 2533 207789424 207789564 7.200000e-41 178.0
4 TraesCS6D01G168900 chr6A 88.462 130 11 4 669 797 207762589 207762715 1.210000e-33 154.0
5 TraesCS6D01G168900 chr6B 93.027 1305 48 15 671 1953 277848245 277849528 0.000000e+00 1866.0
6 TraesCS6D01G168900 chr6B 86.533 349 14 14 1909 2226 277849531 277849877 1.110000e-93 353.0
7 TraesCS6D01G168900 chr6B 97.561 41 1 0 725 765 277848330 277848370 1.260000e-08 71.3
8 TraesCS6D01G168900 chr2A 85.196 689 91 8 1 681 47397737 47397052 0.000000e+00 697.0
9 TraesCS6D01G168900 chr2A 82.906 468 65 12 213 669 437970270 437969807 8.440000e-110 407.0
10 TraesCS6D01G168900 chr2D 88.766 543 56 3 1 543 631883544 631883007 0.000000e+00 660.0
11 TraesCS6D01G168900 chr2D 85.269 577 73 11 1 568 6518784 6519357 3.630000e-163 584.0
12 TraesCS6D01G168900 chr2D 91.940 397 31 1 1 396 32976810 32977206 2.850000e-154 555.0
13 TraesCS6D01G168900 chr2D 83.153 463 63 13 217 669 616992548 616993005 2.350000e-110 409.0
14 TraesCS6D01G168900 chr4B 88.470 477 47 5 6 479 618258334 618258805 1.020000e-158 569.0
15 TraesCS6D01G168900 chr7D 92.526 388 29 0 1 388 538991509 538991122 7.920000e-155 556.0
16 TraesCS6D01G168900 chr7D 86.345 476 63 2 6 479 546050241 546050716 3.740000e-143 518.0
17 TraesCS6D01G168900 chr7D 91.566 83 6 1 1452 1533 483298462 483298544 2.060000e-21 113.0
18 TraesCS6D01G168900 chr5D 91.919 396 32 0 1 396 444886058 444886453 2.850000e-154 555.0
19 TraesCS6D01G168900 chr5D 85.591 347 42 5 329 669 328726793 328727137 8.620000e-95 357.0
20 TraesCS6D01G168900 chr3D 91.919 396 32 0 1 396 578274626 578275021 2.850000e-154 555.0
21 TraesCS6D01G168900 chr3D 80.745 483 72 16 197 669 419997923 419998394 8.620000e-95 357.0
22 TraesCS6D01G168900 chr2B 84.638 345 49 2 329 669 468738192 468738536 8.680000e-90 340.0
23 TraesCS6D01G168900 chr3A 80.127 473 78 13 217 678 501567987 501568454 3.120000e-89 339.0
24 TraesCS6D01G168900 chr4D 84.136 353 51 3 329 677 450504748 450505099 1.120000e-88 337.0
25 TraesCS6D01G168900 chr7A 92.593 81 5 1 1452 1531 549750750 549750830 5.730000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G168900 chr6D 154358424 154360956 2532 False 4678.000000 4678 100.000000 1 2533 1 chr6D.!!$F1 2532
1 TraesCS6D01G168900 chr6D 401136275 401136899 624 True 534.000000 534 82.292000 1 668 1 chr6D.!!$R1 667
2 TraesCS6D01G168900 chr6A 207762589 207764169 1580 False 1085.500000 2017 89.930500 669 2199 2 chr6A.!!$F2 1530
3 TraesCS6D01G168900 chr6B 277848245 277849877 1632 False 763.433333 1866 92.373667 671 2226 3 chr6B.!!$F1 1555
4 TraesCS6D01G168900 chr2A 47397052 47397737 685 True 697.000000 697 85.196000 1 681 1 chr2A.!!$R1 680
5 TraesCS6D01G168900 chr2D 631883007 631883544 537 True 660.000000 660 88.766000 1 543 1 chr2D.!!$R1 542
6 TraesCS6D01G168900 chr2D 6518784 6519357 573 False 584.000000 584 85.269000 1 568 1 chr2D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 497 0.036164 AGTTCGCCCATACAGCACAA 59.964 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2495 0.035534 TGTCCATGAACATGTCCGGG 60.036 55.0 0.0 0.0 37.11 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.043713 CACACGTCATGGCGCAGT 61.044 61.111 21.60 16.20 34.88 4.40
80 82 0.335705 TAGGTACCCGTGGGATGACA 59.664 55.000 13.01 0.00 38.96 3.58
111 113 1.072173 CATCCGGGATGGCAGATGTAA 59.928 52.381 26.20 0.00 36.51 2.41
147 150 5.925969 GGCAAATGTAGTTGTAAAAGCATGT 59.074 36.000 0.00 0.00 0.00 3.21
251 254 3.743911 TGTGTGATTAACTACTTGCCACG 59.256 43.478 0.00 0.00 0.00 4.94
269 274 5.873179 CCACGTATGGTCAAACAATAGTT 57.127 39.130 0.00 0.00 41.64 2.24
284 289 9.462174 CAAACAATAGTTGTCATGTGTGTTTAT 57.538 29.630 0.00 0.00 44.59 1.40
295 300 6.094048 GTCATGTGTGTTTATCTAGTTGCCAT 59.906 38.462 0.00 0.00 0.00 4.40
353 358 4.340666 TCACAGTTGCCATGTGTGTTTATT 59.659 37.500 11.76 0.00 46.49 1.40
364 369 3.195610 TGTGTGTTTATTTGGTTGCCACA 59.804 39.130 0.00 0.00 30.78 4.17
376 381 0.670854 TTGCCACATACGCGCAACTA 60.671 50.000 5.73 0.00 37.58 2.24
450 457 2.126618 CGCGCGTGGACTAAGTGA 60.127 61.111 24.19 0.00 0.00 3.41
451 458 2.434134 CGCGCGTGGACTAAGTGAC 61.434 63.158 24.19 0.00 0.00 3.67
481 488 1.679032 GGCAGAAACTAGTTCGCCCAT 60.679 52.381 23.55 4.06 43.88 4.00
487 494 1.191535 ACTAGTTCGCCCATACAGCA 58.808 50.000 0.00 0.00 0.00 4.41
490 497 0.036164 AGTTCGCCCATACAGCACAA 59.964 50.000 0.00 0.00 0.00 3.33
503 510 2.804167 CACAACTGGCAAACCGCA 59.196 55.556 0.00 0.00 45.17 5.69
519 526 3.857854 CATGCTGCGAGGCGTGTC 61.858 66.667 12.16 0.00 42.35 3.67
550 563 3.853330 GCGCGCACACGATGATGT 61.853 61.111 29.10 0.00 43.93 3.06
569 582 1.336755 GTCCACGTGGCACTCAAATTT 59.663 47.619 30.25 0.00 34.44 1.82
575 588 4.206200 CACGTGGCACTCAAATTTTAACAC 59.794 41.667 16.72 0.00 0.00 3.32
592 605 4.871933 AACACATTTCTTTAGGCTTGGG 57.128 40.909 0.00 0.00 0.00 4.12
594 607 3.165071 CACATTTCTTTAGGCTTGGGGT 58.835 45.455 0.00 0.00 0.00 4.95
622 635 1.359848 ATCAACGTGGATCAAGACGC 58.640 50.000 0.00 0.00 39.22 5.19
624 637 2.380410 AACGTGGATCAAGACGCGC 61.380 57.895 5.73 0.00 43.73 6.86
628 641 4.814294 GGATCAAGACGCGCGGGT 62.814 66.667 35.22 29.93 0.00 5.28
632 645 2.852495 ATCAAGACGCGCGGGTGATT 62.852 55.000 34.38 23.33 0.00 2.57
633 646 3.118454 AAGACGCGCGGGTGATTG 61.118 61.111 34.38 3.55 0.00 2.67
648 661 3.306225 GGTGATTGGCAAACATGTCACAT 60.306 43.478 24.32 0.00 42.34 3.21
655 668 2.034432 GCAAACATGTCACATGTGTGGA 59.966 45.455 33.13 10.69 45.65 4.02
689 702 4.279671 TGGAAAAAGAAAAGGATTAGCGCA 59.720 37.500 11.47 0.00 0.00 6.09
718 731 2.403561 TGAATGGATCATACCCCGTGA 58.596 47.619 0.00 0.00 31.50 4.35
719 732 2.774809 TGAATGGATCATACCCCGTGAA 59.225 45.455 0.00 0.00 31.50 3.18
723 736 3.815809 TGGATCATACCCCGTGAAAATC 58.184 45.455 0.00 0.00 0.00 2.17
770 783 6.404712 AAACAGTTCGAAACGGAGATATTC 57.595 37.500 0.00 0.00 36.23 1.75
771 784 5.326200 ACAGTTCGAAACGGAGATATTCT 57.674 39.130 0.00 0.00 36.23 2.40
800 845 0.878961 ACAGTTCGAAACGGAGGTGC 60.879 55.000 0.00 0.00 36.23 5.01
872 917 1.546029 TCGCCCTATATAGCACAGCAG 59.454 52.381 4.04 2.43 0.00 4.24
907 952 0.251297 CTCCATCCAAACCTGCACCA 60.251 55.000 0.00 0.00 0.00 4.17
1219 1283 3.984508 TCTCGTGACGTTTCTTCTTCT 57.015 42.857 4.40 0.00 0.00 2.85
1247 1311 0.977627 TCTGTGCACGGGATCCTGAT 60.978 55.000 27.90 8.67 0.00 2.90
1285 1349 1.736645 GCGTAACAGAGAAGCGGCA 60.737 57.895 1.45 0.00 0.00 5.69
1386 1450 4.787280 CGGCCAGGTCCTCCTCCT 62.787 72.222 2.24 0.00 43.07 3.69
1584 1666 4.524318 CCGCCGTGCCCGATTAGT 62.524 66.667 0.00 0.00 35.63 2.24
1585 1667 2.510691 CGCCGTGCCCGATTAGTT 60.511 61.111 0.00 0.00 35.63 2.24
1586 1668 1.227031 CGCCGTGCCCGATTAGTTA 60.227 57.895 0.00 0.00 35.63 2.24
1587 1669 1.485032 CGCCGTGCCCGATTAGTTAC 61.485 60.000 0.00 0.00 35.63 2.50
1588 1670 1.156034 GCCGTGCCCGATTAGTTACC 61.156 60.000 0.00 0.00 35.63 2.85
1589 1671 0.176219 CCGTGCCCGATTAGTTACCA 59.824 55.000 0.00 0.00 35.63 3.25
1590 1672 1.567504 CGTGCCCGATTAGTTACCAG 58.432 55.000 0.00 0.00 35.63 4.00
1591 1673 1.135527 CGTGCCCGATTAGTTACCAGA 59.864 52.381 0.00 0.00 35.63 3.86
1592 1674 2.798499 CGTGCCCGATTAGTTACCAGAG 60.798 54.545 0.00 0.00 35.63 3.35
1593 1675 1.138266 TGCCCGATTAGTTACCAGAGC 59.862 52.381 0.00 0.00 0.00 4.09
1594 1676 1.413077 GCCCGATTAGTTACCAGAGCT 59.587 52.381 0.00 0.00 0.00 4.09
1595 1677 2.626743 GCCCGATTAGTTACCAGAGCTA 59.373 50.000 0.00 0.00 0.00 3.32
1596 1678 3.305471 GCCCGATTAGTTACCAGAGCTAG 60.305 52.174 0.00 0.00 0.00 3.42
1614 1696 0.105658 AGATTAGCCTAGCCCGTCCA 60.106 55.000 0.00 0.00 0.00 4.02
1615 1697 0.977395 GATTAGCCTAGCCCGTCCAT 59.023 55.000 0.00 0.00 0.00 3.41
1616 1698 0.977395 ATTAGCCTAGCCCGTCCATC 59.023 55.000 0.00 0.00 0.00 3.51
1617 1699 1.119574 TTAGCCTAGCCCGTCCATCC 61.120 60.000 0.00 0.00 0.00 3.51
1618 1700 3.942439 GCCTAGCCCGTCCATCCC 61.942 72.222 0.00 0.00 0.00 3.85
1708 1790 1.375013 CTTTGGCATTGGCAGGCAC 60.375 57.895 13.02 5.49 43.71 5.01
1732 1814 1.065551 GTTGACTCCTGGTGTGCAAAC 59.934 52.381 6.07 0.00 0.00 2.93
1738 1820 1.072489 TCCTGGTGTGCAAACGGATTA 59.928 47.619 0.00 0.00 0.00 1.75
1769 1851 7.816995 CCAATTAGGAGTAGCAGTAGATGATTC 59.183 40.741 0.00 0.00 41.22 2.52
1904 1986 0.870393 ACACGCAGTTGCATCTCAAG 59.130 50.000 4.84 0.00 41.61 3.02
1911 2049 4.790140 CGCAGTTGCATCTCAAGTATTTTC 59.210 41.667 4.84 0.00 42.21 2.29
1960 2103 9.151471 TCTTCATGATTACTTAAAAGAGGAACG 57.849 33.333 0.00 0.00 0.00 3.95
2006 2149 2.276201 GAAGGTTGTTGTTTTGGGTGC 58.724 47.619 0.00 0.00 0.00 5.01
2007 2150 0.174617 AGGTTGTTGTTTTGGGTGCG 59.825 50.000 0.00 0.00 0.00 5.34
2008 2151 0.173708 GGTTGTTGTTTTGGGTGCGA 59.826 50.000 0.00 0.00 0.00 5.10
2009 2152 1.404315 GGTTGTTGTTTTGGGTGCGAA 60.404 47.619 0.00 0.00 0.00 4.70
2205 2399 4.041938 TCTCGTACAAATACCCCAAAACCT 59.958 41.667 0.00 0.00 0.00 3.50
2206 2400 4.073549 TCGTACAAATACCCCAAAACCTG 58.926 43.478 0.00 0.00 0.00 4.00
2226 2420 7.189079 ACCTGGAACCAACAAAATTTAAAGA 57.811 32.000 0.00 0.00 0.00 2.52
2227 2421 7.045416 ACCTGGAACCAACAAAATTTAAAGAC 58.955 34.615 0.00 0.00 0.00 3.01
2228 2422 7.044798 CCTGGAACCAACAAAATTTAAAGACA 58.955 34.615 0.00 0.00 0.00 3.41
2229 2423 7.714813 CCTGGAACCAACAAAATTTAAAGACAT 59.285 33.333 0.00 0.00 0.00 3.06
2230 2424 8.430801 TGGAACCAACAAAATTTAAAGACATG 57.569 30.769 0.00 0.00 0.00 3.21
2231 2425 8.043710 TGGAACCAACAAAATTTAAAGACATGT 58.956 29.630 0.00 0.00 0.00 3.21
2232 2426 8.334632 GGAACCAACAAAATTTAAAGACATGTG 58.665 33.333 1.15 0.00 0.00 3.21
2233 2427 9.092876 GAACCAACAAAATTTAAAGACATGTGA 57.907 29.630 1.15 0.00 0.00 3.58
2234 2428 9.442047 AACCAACAAAATTTAAAGACATGTGAA 57.558 25.926 1.15 0.00 0.00 3.18
2235 2429 8.878769 ACCAACAAAATTTAAAGACATGTGAAC 58.121 29.630 1.15 0.00 0.00 3.18
2236 2430 9.097257 CCAACAAAATTTAAAGACATGTGAACT 57.903 29.630 1.15 0.00 0.00 3.01
2239 2433 8.603181 ACAAAATTTAAAGACATGTGAACTTGC 58.397 29.630 1.15 0.00 0.00 4.01
2240 2434 8.819974 CAAAATTTAAAGACATGTGAACTTGCT 58.180 29.630 1.15 0.00 0.00 3.91
2241 2435 7.935338 AATTTAAAGACATGTGAACTTGCTG 57.065 32.000 1.15 0.00 0.00 4.41
2242 2436 6.691754 TTTAAAGACATGTGAACTTGCTGA 57.308 33.333 1.15 0.00 0.00 4.26
2243 2437 6.691754 TTAAAGACATGTGAACTTGCTGAA 57.308 33.333 1.15 0.00 0.00 3.02
2244 2438 5.779529 AAAGACATGTGAACTTGCTGAAT 57.220 34.783 1.15 0.00 0.00 2.57
2245 2439 5.779529 AAGACATGTGAACTTGCTGAATT 57.220 34.783 1.15 0.00 0.00 2.17
2246 2440 5.117355 AGACATGTGAACTTGCTGAATTG 57.883 39.130 1.15 0.00 0.00 2.32
2247 2441 3.645884 ACATGTGAACTTGCTGAATTGC 58.354 40.909 0.00 0.00 0.00 3.56
2248 2442 3.068448 ACATGTGAACTTGCTGAATTGCA 59.932 39.130 0.00 0.00 41.65 4.08
2269 2463 2.674796 GAGCATCTACAACCGGAAGT 57.325 50.000 9.46 8.83 0.00 3.01
2270 2464 3.795623 GAGCATCTACAACCGGAAGTA 57.204 47.619 9.46 9.62 0.00 2.24
2271 2465 4.323553 GAGCATCTACAACCGGAAGTAT 57.676 45.455 9.46 0.00 0.00 2.12
2272 2466 4.299978 GAGCATCTACAACCGGAAGTATC 58.700 47.826 9.46 0.82 0.00 2.24
2273 2467 3.704566 AGCATCTACAACCGGAAGTATCA 59.295 43.478 9.46 0.55 0.00 2.15
2274 2468 4.161565 AGCATCTACAACCGGAAGTATCAA 59.838 41.667 9.46 0.00 0.00 2.57
2275 2469 4.873827 GCATCTACAACCGGAAGTATCAAA 59.126 41.667 9.46 0.00 0.00 2.69
2276 2470 5.353123 GCATCTACAACCGGAAGTATCAAAA 59.647 40.000 9.46 0.00 0.00 2.44
2277 2471 6.038271 GCATCTACAACCGGAAGTATCAAAAT 59.962 38.462 9.46 0.00 0.00 1.82
2278 2472 7.630924 CATCTACAACCGGAAGTATCAAAATC 58.369 38.462 9.46 0.00 0.00 2.17
2279 2473 6.110707 TCTACAACCGGAAGTATCAAAATCC 58.889 40.000 9.46 0.00 0.00 3.01
2280 2474 4.014406 ACAACCGGAAGTATCAAAATCCC 58.986 43.478 9.46 0.00 0.00 3.85
2281 2475 3.292492 ACCGGAAGTATCAAAATCCCC 57.708 47.619 9.46 0.00 0.00 4.81
2282 2476 2.578940 ACCGGAAGTATCAAAATCCCCA 59.421 45.455 9.46 0.00 0.00 4.96
2283 2477 3.010808 ACCGGAAGTATCAAAATCCCCAA 59.989 43.478 9.46 0.00 0.00 4.12
2284 2478 4.020543 CCGGAAGTATCAAAATCCCCAAA 58.979 43.478 0.00 0.00 0.00 3.28
2285 2479 4.464597 CCGGAAGTATCAAAATCCCCAAAA 59.535 41.667 0.00 0.00 0.00 2.44
2286 2480 5.128663 CCGGAAGTATCAAAATCCCCAAAAT 59.871 40.000 0.00 0.00 0.00 1.82
2287 2481 6.042143 CGGAAGTATCAAAATCCCCAAAATG 58.958 40.000 0.00 0.00 0.00 2.32
2288 2482 6.127479 CGGAAGTATCAAAATCCCCAAAATGA 60.127 38.462 0.00 0.00 0.00 2.57
2289 2483 7.041721 GGAAGTATCAAAATCCCCAAAATGAC 58.958 38.462 0.00 0.00 0.00 3.06
2290 2484 6.544928 AGTATCAAAATCCCCAAAATGACC 57.455 37.500 0.00 0.00 0.00 4.02
2291 2485 3.951775 TCAAAATCCCCAAAATGACCG 57.048 42.857 0.00 0.00 0.00 4.79
2292 2486 3.235200 TCAAAATCCCCAAAATGACCGT 58.765 40.909 0.00 0.00 0.00 4.83
2293 2487 3.006323 TCAAAATCCCCAAAATGACCGTG 59.994 43.478 0.00 0.00 0.00 4.94
2294 2488 1.555967 AATCCCCAAAATGACCGTGG 58.444 50.000 0.00 0.00 0.00 4.94
2295 2489 0.701731 ATCCCCAAAATGACCGTGGA 59.298 50.000 0.00 0.00 34.05 4.02
2296 2490 0.250989 TCCCCAAAATGACCGTGGAC 60.251 55.000 0.00 0.00 34.05 4.02
2297 2491 0.538516 CCCCAAAATGACCGTGGACA 60.539 55.000 0.00 0.00 34.05 4.02
2298 2492 0.596082 CCCAAAATGACCGTGGACAC 59.404 55.000 0.00 0.00 34.05 3.67
2299 2493 1.313772 CCAAAATGACCGTGGACACA 58.686 50.000 3.12 0.00 34.05 3.72
2300 2494 1.001815 CCAAAATGACCGTGGACACAC 60.002 52.381 3.12 0.00 44.23 3.82
2301 2495 1.001815 CAAAATGACCGTGGACACACC 60.002 52.381 3.12 0.00 44.86 4.16
2302 2496 0.536460 AAATGACCGTGGACACACCC 60.536 55.000 3.12 0.00 44.86 4.61
2303 2497 2.406002 AATGACCGTGGACACACCCC 62.406 60.000 3.12 0.00 44.86 4.95
2304 2498 4.675029 GACCGTGGACACACCCCG 62.675 72.222 3.12 0.00 44.86 5.73
2307 2501 4.675029 CGTGGACACACCCCGGAC 62.675 72.222 0.73 0.00 44.86 4.79
2308 2502 3.552384 GTGGACACACCCCGGACA 61.552 66.667 0.73 0.00 41.84 4.02
2309 2503 2.528127 TGGACACACCCCGGACAT 60.528 61.111 0.73 0.00 38.00 3.06
2310 2504 2.046314 GGACACACCCCGGACATG 60.046 66.667 0.73 0.00 0.00 3.21
2311 2505 2.747686 GACACACCCCGGACATGT 59.252 61.111 0.73 0.00 0.00 3.21
2312 2506 1.072505 GACACACCCCGGACATGTT 59.927 57.895 0.73 0.00 0.00 2.71
2313 2507 0.953960 GACACACCCCGGACATGTTC 60.954 60.000 0.73 0.00 0.00 3.18
2314 2508 1.072332 CACACCCCGGACATGTTCA 59.928 57.895 0.73 0.00 0.00 3.18
2315 2509 0.322456 CACACCCCGGACATGTTCAT 60.322 55.000 0.73 0.00 0.00 2.57
2316 2510 0.322456 ACACCCCGGACATGTTCATG 60.322 55.000 0.73 10.72 0.00 3.07
2317 2511 1.031571 CACCCCGGACATGTTCATGG 61.032 60.000 0.73 6.17 0.00 3.66
2318 2512 1.204786 ACCCCGGACATGTTCATGGA 61.205 55.000 14.40 0.00 0.00 3.41
2319 2513 0.748005 CCCCGGACATGTTCATGGAC 60.748 60.000 0.73 0.00 0.00 4.02
2320 2514 0.035534 CCCGGACATGTTCATGGACA 60.036 55.000 9.85 9.85 0.00 4.02
2321 2515 1.372582 CCGGACATGTTCATGGACAG 58.627 55.000 13.40 7.43 32.19 3.51
2322 2516 0.729116 CGGACATGTTCATGGACAGC 59.271 55.000 13.40 4.55 32.19 4.40
2323 2517 0.729116 GGACATGTTCATGGACAGCG 59.271 55.000 13.40 8.77 32.19 5.18
2324 2518 1.675714 GGACATGTTCATGGACAGCGA 60.676 52.381 13.40 0.00 32.19 4.93
2325 2519 1.394917 GACATGTTCATGGACAGCGAC 59.605 52.381 13.40 3.23 32.19 5.19
2326 2520 0.729116 CATGTTCATGGACAGCGACC 59.271 55.000 13.40 0.00 32.19 4.79
2327 2521 0.740868 ATGTTCATGGACAGCGACCG 60.741 55.000 13.40 0.00 32.19 4.79
2328 2522 2.100631 GTTCATGGACAGCGACCGG 61.101 63.158 0.00 0.00 0.00 5.28
2329 2523 2.279810 TTCATGGACAGCGACCGGA 61.280 57.895 9.46 0.00 0.00 5.14
2330 2524 2.501223 TTCATGGACAGCGACCGGAC 62.501 60.000 9.46 0.00 0.00 4.79
2331 2525 2.680352 ATGGACAGCGACCGGACT 60.680 61.111 9.46 0.00 0.00 3.85
2332 2526 1.379443 ATGGACAGCGACCGGACTA 60.379 57.895 9.46 0.00 0.00 2.59
2333 2527 1.664321 ATGGACAGCGACCGGACTAC 61.664 60.000 9.46 0.00 0.00 2.73
2334 2528 2.338015 GGACAGCGACCGGACTACA 61.338 63.158 9.46 0.00 0.00 2.74
2335 2529 1.154073 GACAGCGACCGGACTACAC 60.154 63.158 9.46 0.00 0.00 2.90
2336 2530 1.859427 GACAGCGACCGGACTACACA 61.859 60.000 9.46 0.00 0.00 3.72
2337 2531 1.443872 CAGCGACCGGACTACACAC 60.444 63.158 9.46 0.00 0.00 3.82
2338 2532 1.900016 AGCGACCGGACTACACACA 60.900 57.895 9.46 0.00 0.00 3.72
2339 2533 1.007038 GCGACCGGACTACACACAA 60.007 57.895 9.46 0.00 0.00 3.33
2340 2534 0.598158 GCGACCGGACTACACACAAA 60.598 55.000 9.46 0.00 0.00 2.83
2341 2535 1.855513 CGACCGGACTACACACAAAA 58.144 50.000 9.46 0.00 0.00 2.44
2342 2536 2.203401 CGACCGGACTACACACAAAAA 58.797 47.619 9.46 0.00 0.00 1.94
2343 2537 2.803956 CGACCGGACTACACACAAAAAT 59.196 45.455 9.46 0.00 0.00 1.82
2344 2538 3.249080 CGACCGGACTACACACAAAAATT 59.751 43.478 9.46 0.00 0.00 1.82
2345 2539 4.448395 CGACCGGACTACACACAAAAATTA 59.552 41.667 9.46 0.00 0.00 1.40
2346 2540 5.121142 CGACCGGACTACACACAAAAATTAT 59.879 40.000 9.46 0.00 0.00 1.28
2347 2541 6.490566 ACCGGACTACACACAAAAATTATC 57.509 37.500 9.46 0.00 0.00 1.75
2348 2542 5.413523 ACCGGACTACACACAAAAATTATCC 59.586 40.000 9.46 0.00 0.00 2.59
2349 2543 5.446741 CCGGACTACACACAAAAATTATCCG 60.447 44.000 0.00 0.00 43.82 4.18
2350 2544 5.329493 GGACTACACACAAAAATTATCCGC 58.671 41.667 0.00 0.00 0.00 5.54
2351 2545 5.123344 GGACTACACACAAAAATTATCCGCT 59.877 40.000 0.00 0.00 0.00 5.52
2352 2546 6.314400 GGACTACACACAAAAATTATCCGCTA 59.686 38.462 0.00 0.00 0.00 4.26
2353 2547 7.068692 ACTACACACAAAAATTATCCGCTAC 57.931 36.000 0.00 0.00 0.00 3.58
2354 2548 5.950758 ACACACAAAAATTATCCGCTACA 57.049 34.783 0.00 0.00 0.00 2.74
2355 2549 6.509418 ACACACAAAAATTATCCGCTACAT 57.491 33.333 0.00 0.00 0.00 2.29
2356 2550 6.919721 ACACACAAAAATTATCCGCTACATT 58.080 32.000 0.00 0.00 0.00 2.71
2357 2551 7.027161 ACACACAAAAATTATCCGCTACATTC 58.973 34.615 0.00 0.00 0.00 2.67
2358 2552 7.026562 CACACAAAAATTATCCGCTACATTCA 58.973 34.615 0.00 0.00 0.00 2.57
2359 2553 7.701924 CACACAAAAATTATCCGCTACATTCAT 59.298 33.333 0.00 0.00 0.00 2.57
2360 2554 7.701924 ACACAAAAATTATCCGCTACATTCATG 59.298 33.333 0.00 0.00 0.00 3.07
2361 2555 7.914871 CACAAAAATTATCCGCTACATTCATGA 59.085 33.333 0.00 0.00 0.00 3.07
2362 2556 8.465999 ACAAAAATTATCCGCTACATTCATGAA 58.534 29.630 11.26 11.26 0.00 2.57
2363 2557 8.745837 CAAAAATTATCCGCTACATTCATGAAC 58.254 33.333 11.07 0.00 0.00 3.18
2364 2558 6.560253 AATTATCCGCTACATTCATGAACC 57.440 37.500 11.07 0.00 0.00 3.62
2365 2559 3.845781 ATCCGCTACATTCATGAACCT 57.154 42.857 11.07 0.91 0.00 3.50
2366 2560 3.179443 TCCGCTACATTCATGAACCTC 57.821 47.619 11.07 0.00 0.00 3.85
2367 2561 2.499693 TCCGCTACATTCATGAACCTCA 59.500 45.455 11.07 0.00 0.00 3.86
2368 2562 3.055458 TCCGCTACATTCATGAACCTCAA 60.055 43.478 11.07 0.00 0.00 3.02
2369 2563 3.689161 CCGCTACATTCATGAACCTCAAA 59.311 43.478 11.07 0.00 0.00 2.69
2370 2564 4.437390 CCGCTACATTCATGAACCTCAAAC 60.437 45.833 11.07 0.00 0.00 2.93
2371 2565 4.393062 CGCTACATTCATGAACCTCAAACT 59.607 41.667 11.07 0.00 0.00 2.66
2372 2566 5.106555 CGCTACATTCATGAACCTCAAACTT 60.107 40.000 11.07 0.00 0.00 2.66
2373 2567 6.568462 CGCTACATTCATGAACCTCAAACTTT 60.568 38.462 11.07 0.00 0.00 2.66
2374 2568 7.360861 CGCTACATTCATGAACCTCAAACTTTA 60.361 37.037 11.07 0.00 0.00 1.85
2375 2569 8.462016 GCTACATTCATGAACCTCAAACTTTAT 58.538 33.333 11.07 0.00 0.00 1.40
2378 2572 8.739972 ACATTCATGAACCTCAAACTTTATACC 58.260 33.333 11.07 0.00 0.00 2.73
2379 2573 8.960591 CATTCATGAACCTCAAACTTTATACCT 58.039 33.333 11.07 0.00 0.00 3.08
2380 2574 8.561738 TTCATGAACCTCAAACTTTATACCTC 57.438 34.615 3.38 0.00 0.00 3.85
2381 2575 7.685481 TCATGAACCTCAAACTTTATACCTCA 58.315 34.615 0.00 0.00 0.00 3.86
2382 2576 8.160765 TCATGAACCTCAAACTTTATACCTCAA 58.839 33.333 0.00 0.00 0.00 3.02
2383 2577 7.979444 TGAACCTCAAACTTTATACCTCAAG 57.021 36.000 0.00 0.00 0.00 3.02
2384 2578 7.514721 TGAACCTCAAACTTTATACCTCAAGT 58.485 34.615 0.00 0.00 34.58 3.16
2385 2579 7.660208 TGAACCTCAAACTTTATACCTCAAGTC 59.340 37.037 0.00 0.00 31.79 3.01
2386 2580 7.074653 ACCTCAAACTTTATACCTCAAGTCA 57.925 36.000 0.00 0.00 31.79 3.41
2387 2581 7.690256 ACCTCAAACTTTATACCTCAAGTCAT 58.310 34.615 0.00 0.00 31.79 3.06
2388 2582 7.607991 ACCTCAAACTTTATACCTCAAGTCATG 59.392 37.037 0.00 0.00 31.79 3.07
2389 2583 7.377766 TCAAACTTTATACCTCAAGTCATGC 57.622 36.000 0.00 0.00 31.79 4.06
2390 2584 6.374333 TCAAACTTTATACCTCAAGTCATGCC 59.626 38.462 0.00 0.00 31.79 4.40
2391 2585 4.442706 ACTTTATACCTCAAGTCATGCCG 58.557 43.478 0.00 0.00 0.00 5.69
2392 2586 2.526304 TATACCTCAAGTCATGCCGC 57.474 50.000 0.00 0.00 0.00 6.53
2393 2587 0.530650 ATACCTCAAGTCATGCCGCG 60.531 55.000 0.00 0.00 0.00 6.46
2394 2588 1.884075 TACCTCAAGTCATGCCGCGT 61.884 55.000 4.92 0.00 0.00 6.01
2395 2589 1.153647 CCTCAAGTCATGCCGCGTA 60.154 57.895 4.92 0.00 0.00 4.42
2396 2590 0.530650 CCTCAAGTCATGCCGCGTAT 60.531 55.000 4.92 0.00 0.00 3.06
2397 2591 1.269569 CCTCAAGTCATGCCGCGTATA 60.270 52.381 4.92 0.00 0.00 1.47
2398 2592 1.787155 CTCAAGTCATGCCGCGTATAC 59.213 52.381 4.92 0.00 0.00 1.47
2399 2593 1.135333 TCAAGTCATGCCGCGTATACA 59.865 47.619 4.92 0.00 0.00 2.29
2400 2594 2.135139 CAAGTCATGCCGCGTATACAT 58.865 47.619 4.92 0.00 0.00 2.29
2401 2595 2.065993 AGTCATGCCGCGTATACATC 57.934 50.000 4.92 0.00 0.00 3.06
2402 2596 1.613925 AGTCATGCCGCGTATACATCT 59.386 47.619 4.92 0.00 0.00 2.90
2403 2597 2.035961 AGTCATGCCGCGTATACATCTT 59.964 45.455 4.92 0.00 0.00 2.40
2404 2598 3.254903 AGTCATGCCGCGTATACATCTTA 59.745 43.478 4.92 0.00 0.00 2.10
2405 2599 3.985279 GTCATGCCGCGTATACATCTTAA 59.015 43.478 4.92 0.00 0.00 1.85
2406 2600 4.446385 GTCATGCCGCGTATACATCTTAAA 59.554 41.667 4.92 0.00 0.00 1.52
2407 2601 4.446385 TCATGCCGCGTATACATCTTAAAC 59.554 41.667 4.92 0.00 0.00 2.01
2408 2602 4.049546 TGCCGCGTATACATCTTAAACT 57.950 40.909 4.92 0.00 0.00 2.66
2409 2603 5.185668 TGCCGCGTATACATCTTAAACTA 57.814 39.130 4.92 0.00 0.00 2.24
2410 2604 5.775686 TGCCGCGTATACATCTTAAACTAT 58.224 37.500 4.92 0.00 0.00 2.12
2411 2605 6.218019 TGCCGCGTATACATCTTAAACTATT 58.782 36.000 4.92 0.00 0.00 1.73
2412 2606 6.702723 TGCCGCGTATACATCTTAAACTATTT 59.297 34.615 4.92 0.00 0.00 1.40
2413 2607 7.866898 TGCCGCGTATACATCTTAAACTATTTA 59.133 33.333 4.92 0.00 0.00 1.40
2414 2608 8.866956 GCCGCGTATACATCTTAAACTATTTAT 58.133 33.333 4.92 0.00 0.00 1.40
2430 2624 9.764363 AAACTATTTATAGTCATGCAGATCGAA 57.236 29.630 3.04 0.00 42.47 3.71
2431 2625 9.764363 AACTATTTATAGTCATGCAGATCGAAA 57.236 29.630 3.04 0.00 42.47 3.46
2432 2626 9.764363 ACTATTTATAGTCATGCAGATCGAAAA 57.236 29.630 0.00 0.00 39.27 2.29
2434 2628 6.844696 TTATAGTCATGCAGATCGAAAACC 57.155 37.500 0.00 0.00 0.00 3.27
2435 2629 3.340814 AGTCATGCAGATCGAAAACCT 57.659 42.857 0.00 0.00 0.00 3.50
2436 2630 4.471904 AGTCATGCAGATCGAAAACCTA 57.528 40.909 0.00 0.00 0.00 3.08
2437 2631 5.028549 AGTCATGCAGATCGAAAACCTAT 57.971 39.130 0.00 0.00 0.00 2.57
2438 2632 4.813161 AGTCATGCAGATCGAAAACCTATG 59.187 41.667 0.00 0.00 0.00 2.23
2439 2633 4.572389 GTCATGCAGATCGAAAACCTATGT 59.428 41.667 0.00 0.00 0.00 2.29
2440 2634 5.753438 GTCATGCAGATCGAAAACCTATGTA 59.247 40.000 0.00 0.00 0.00 2.29
2441 2635 5.753438 TCATGCAGATCGAAAACCTATGTAC 59.247 40.000 0.00 0.00 0.00 2.90
2442 2636 5.339008 TGCAGATCGAAAACCTATGTACT 57.661 39.130 0.00 0.00 0.00 2.73
2443 2637 6.459670 TGCAGATCGAAAACCTATGTACTA 57.540 37.500 0.00 0.00 0.00 1.82
2444 2638 6.270815 TGCAGATCGAAAACCTATGTACTAC 58.729 40.000 0.00 0.00 0.00 2.73
2445 2639 5.398711 GCAGATCGAAAACCTATGTACTACG 59.601 44.000 0.00 0.00 0.00 3.51
2446 2640 6.493116 CAGATCGAAAACCTATGTACTACGT 58.507 40.000 0.00 0.00 0.00 3.57
2447 2641 7.633621 CAGATCGAAAACCTATGTACTACGTA 58.366 38.462 0.00 0.00 0.00 3.57
2448 2642 7.585573 CAGATCGAAAACCTATGTACTACGTAC 59.414 40.741 0.00 0.00 39.24 3.67
2473 2667 9.060347 ACATATCTTAAACTACTTATCGTCGGA 57.940 33.333 0.00 0.00 0.00 4.55
2474 2668 9.544314 CATATCTTAAACTACTTATCGTCGGAG 57.456 37.037 0.00 0.00 0.00 4.63
2475 2669 7.798596 ATCTTAAACTACTTATCGTCGGAGA 57.201 36.000 0.00 0.00 0.00 3.71
2476 2670 7.798596 TCTTAAACTACTTATCGTCGGAGAT 57.201 36.000 0.00 0.00 40.67 2.75
2477 2671 7.637229 TCTTAAACTACTTATCGTCGGAGATG 58.363 38.462 0.00 0.00 46.63 2.90
2478 2672 5.831702 AAACTACTTATCGTCGGAGATGT 57.168 39.130 0.00 0.00 45.22 3.06
2479 2673 5.421212 AACTACTTATCGTCGGAGATGTC 57.579 43.478 0.00 0.00 45.22 3.06
2480 2674 3.493877 ACTACTTATCGTCGGAGATGTCG 59.506 47.826 0.00 0.00 45.22 4.35
2481 2675 1.002684 ACTTATCGTCGGAGATGTCGC 60.003 52.381 0.00 0.00 45.22 5.19
2482 2676 0.309922 TTATCGTCGGAGATGTCGCC 59.690 55.000 0.00 0.00 45.22 5.54
2488 2682 3.449349 GGAGATGTCGCCGATCCT 58.551 61.111 0.00 0.00 0.00 3.24
2489 2683 1.287503 GGAGATGTCGCCGATCCTC 59.712 63.158 0.00 0.00 0.00 3.71
2490 2684 1.081774 GAGATGTCGCCGATCCTCG 60.082 63.158 0.00 0.00 40.07 4.63
2491 2685 1.787057 GAGATGTCGCCGATCCTCGT 61.787 60.000 0.00 0.00 38.40 4.18
2492 2686 1.658717 GATGTCGCCGATCCTCGTG 60.659 63.158 0.00 0.00 38.40 4.35
2493 2687 3.774959 ATGTCGCCGATCCTCGTGC 62.775 63.158 0.00 0.00 38.40 5.34
2500 2694 4.593864 GATCCTCGTGCCCGGCTC 62.594 72.222 11.61 6.14 33.95 4.70
2515 2709 2.183555 CTCGGGTAGACGGGCAAC 59.816 66.667 0.00 0.00 0.00 4.17
2516 2710 2.283388 TCGGGTAGACGGGCAACT 60.283 61.111 0.00 0.00 0.00 3.16
2526 2720 3.745803 GGGCAACTGCAGCAGCTC 61.746 66.667 23.05 19.90 44.36 4.09
2527 2721 3.745803 GGCAACTGCAGCAGCTCC 61.746 66.667 23.05 16.23 44.36 4.70
2528 2722 4.099170 GCAACTGCAGCAGCTCCG 62.099 66.667 23.05 9.28 42.74 4.63
2529 2723 3.429141 CAACTGCAGCAGCTCCGG 61.429 66.667 23.05 0.00 42.74 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.858729 GCATATTTGCTTCGTGCCG 58.141 52.632 0.35 0.00 45.77 5.69
46 47 0.248289 ACCTAACGTAACTGCGCCAT 59.752 50.000 4.18 0.00 34.88 4.40
80 82 2.818751 TCCCGGATGGCAACTAAATT 57.181 45.000 0.73 0.00 37.61 1.82
111 113 3.243359 ACATTTGCCATCCCGGATAAT 57.757 42.857 0.73 0.00 36.56 1.28
147 150 6.650120 AGTTAACCAAAACAGAGAGAGTTGA 58.350 36.000 0.88 0.00 0.00 3.18
175 178 8.632679 CAACTACCATAAATTAGACATGGCAAT 58.367 33.333 0.00 0.00 42.54 3.56
251 254 7.750458 CACATGACAACTATTGTTTGACCATAC 59.250 37.037 0.00 0.00 45.52 2.39
269 274 5.411361 GGCAACTAGATAAACACACATGACA 59.589 40.000 0.00 0.00 0.00 3.58
315 320 6.542370 GGCAACTGTGATTAACCATACATAGT 59.458 38.462 0.00 0.00 36.56 2.12
317 322 6.418946 TGGCAACTGTGATTAACCATACATA 58.581 36.000 0.00 0.00 37.61 2.29
353 358 2.972144 GCGCGTATGTGGCAACCAA 61.972 57.895 8.43 0.00 34.18 3.67
376 381 0.667993 CGTTGTTGGATGGCAACTGT 59.332 50.000 0.00 0.00 41.80 3.55
446 453 4.626081 GCCCACACAGCCGTCACT 62.626 66.667 0.00 0.00 0.00 3.41
450 457 3.414136 TTTCTGCCCACACAGCCGT 62.414 57.895 0.00 0.00 37.59 5.68
451 458 2.594303 TTTCTGCCCACACAGCCG 60.594 61.111 0.00 0.00 37.59 5.52
481 488 1.028905 GGTTTGCCAGTTGTGCTGTA 58.971 50.000 0.00 0.00 43.55 2.74
487 494 1.363443 CATGCGGTTTGCCAGTTGT 59.637 52.632 0.00 0.00 45.60 3.32
490 497 2.598394 AGCATGCGGTTTGCCAGT 60.598 55.556 13.01 0.00 45.60 4.00
511 518 4.719369 GAGTTCGCCGACACGCCT 62.719 66.667 0.00 0.00 0.00 5.52
533 540 3.757253 GACATCATCGTGTGCGCGC 62.757 63.158 27.26 27.26 38.14 6.86
537 544 1.014044 ACGTGGACATCATCGTGTGC 61.014 55.000 0.00 0.00 40.40 4.57
550 563 1.686355 AAATTTGAGTGCCACGTGGA 58.314 45.000 38.30 19.89 37.39 4.02
569 582 5.245075 CCCCAAGCCTAAAGAAATGTGTTAA 59.755 40.000 0.00 0.00 0.00 2.01
575 588 5.993748 TTTACCCCAAGCCTAAAGAAATG 57.006 39.130 0.00 0.00 0.00 2.32
587 600 4.277423 ACGTTGATTCTGTTTTACCCCAAG 59.723 41.667 0.00 0.00 0.00 3.61
590 603 3.057806 CCACGTTGATTCTGTTTTACCCC 60.058 47.826 0.00 0.00 0.00 4.95
592 605 5.180492 TGATCCACGTTGATTCTGTTTTACC 59.820 40.000 3.34 0.00 0.00 2.85
594 607 6.708502 TCTTGATCCACGTTGATTCTGTTTTA 59.291 34.615 3.34 0.00 0.00 1.52
622 635 2.126502 GTTTGCCAATCACCCGCG 60.127 61.111 0.00 0.00 0.00 6.46
624 637 0.602562 ACATGTTTGCCAATCACCCG 59.397 50.000 0.00 0.00 0.00 5.28
628 641 3.321396 ACATGTGACATGTTTGCCAATCA 59.679 39.130 24.38 0.00 0.00 2.57
632 645 2.030371 ACACATGTGACATGTTTGCCA 58.970 42.857 31.94 0.00 0.00 4.92
633 646 2.798976 ACACATGTGACATGTTTGCC 57.201 45.000 31.94 0.00 0.00 4.52
648 661 4.009370 TCCAAATGATAACGTCCACACA 57.991 40.909 0.00 0.00 0.00 3.72
655 668 8.417884 TCCTTTTCTTTTTCCAAATGATAACGT 58.582 29.630 0.00 0.00 0.00 3.99
689 702 5.337894 GGGTATGATCCATTCATCACGAGAT 60.338 44.000 0.00 0.00 44.13 2.75
701 714 3.943671 TTTTCACGGGGTATGATCCAT 57.056 42.857 0.00 0.00 0.00 3.41
702 715 3.434453 GGATTTTCACGGGGTATGATCCA 60.434 47.826 0.00 0.00 0.00 3.41
800 845 1.330521 CGGTGTTTGGACTCAACACAG 59.669 52.381 15.72 9.34 37.01 3.66
907 952 1.530655 CCTGGCCTGTTTCGGGTTT 60.531 57.895 3.32 0.00 31.34 3.27
1192 1256 1.387084 GAAACGTCACGAGATCAGCAC 59.613 52.381 2.91 0.00 0.00 4.40
1219 1283 1.270305 CCCGTGCACAGAGAAGAAGAA 60.270 52.381 18.64 0.00 0.00 2.52
1247 1311 2.821969 GCCAAGAATCAAGAAAGCTCCA 59.178 45.455 0.00 0.00 0.00 3.86
1593 1675 1.819903 GGACGGGCTAGGCTAATCTAG 59.180 57.143 16.80 2.30 39.64 2.43
1594 1676 1.146359 TGGACGGGCTAGGCTAATCTA 59.854 52.381 16.80 6.60 0.00 1.98
1595 1677 0.105658 TGGACGGGCTAGGCTAATCT 60.106 55.000 16.80 0.00 0.00 2.40
1596 1678 0.977395 ATGGACGGGCTAGGCTAATC 59.023 55.000 16.80 10.78 0.00 1.75
1614 1696 4.760220 AAGCAGGGGACGGGGGAT 62.760 66.667 0.00 0.00 0.00 3.85
1615 1697 4.995058 AAAGCAGGGGACGGGGGA 62.995 66.667 0.00 0.00 0.00 4.81
1616 1698 3.979497 AAAAGCAGGGGACGGGGG 61.979 66.667 0.00 0.00 0.00 5.40
1617 1699 2.676471 CAAAAGCAGGGGACGGGG 60.676 66.667 0.00 0.00 0.00 5.73
1618 1700 3.373565 GCAAAAGCAGGGGACGGG 61.374 66.667 0.00 0.00 0.00 5.28
1699 1781 4.560743 TCAACAGCGTGCCTGCCA 62.561 61.111 0.00 0.00 45.78 4.92
1708 1790 1.069765 ACACCAGGAGTCAACAGCG 59.930 57.895 0.00 0.00 0.00 5.18
1732 1814 6.535508 GCTACTCCTAATTGGCTAATAATCCG 59.464 42.308 0.00 0.00 35.26 4.18
1738 1820 5.896073 ACTGCTACTCCTAATTGGCTAAT 57.104 39.130 0.00 0.00 35.26 1.73
1769 1851 1.654105 GTAGATCGACACCAAAGCGTG 59.346 52.381 0.53 0.00 39.75 5.34
1953 2091 3.062122 TCAATTAACCACCCGTTCCTC 57.938 47.619 0.00 0.00 35.79 3.71
1960 2103 2.666317 CCCTCCATCAATTAACCACCC 58.334 52.381 0.00 0.00 0.00 4.61
2006 2149 2.428902 TACACGCGTCCGGTTTCG 60.429 61.111 9.86 6.72 39.22 3.46
2007 2150 1.081242 TCTACACGCGTCCGGTTTC 60.081 57.895 9.86 0.00 39.22 2.78
2008 2151 1.372128 GTCTACACGCGTCCGGTTT 60.372 57.895 9.86 0.00 39.22 3.27
2009 2152 2.256461 GTCTACACGCGTCCGGTT 59.744 61.111 9.86 0.00 39.22 4.44
2092 2270 1.719780 GTTTAACACGGCTCAGACTCG 59.280 52.381 0.00 0.00 0.00 4.18
2205 2399 8.043710 ACATGTCTTTAAATTTTGTTGGTTCCA 58.956 29.630 0.00 0.00 0.00 3.53
2206 2400 8.334632 CACATGTCTTTAAATTTTGTTGGTTCC 58.665 33.333 0.00 0.00 0.00 3.62
2226 2420 3.068448 TGCAATTCAGCAAGTTCACATGT 59.932 39.130 0.00 0.00 42.46 3.21
2227 2421 3.644823 TGCAATTCAGCAAGTTCACATG 58.355 40.909 0.00 0.00 42.46 3.21
2246 2440 1.009829 CCGGTTGTAGATGCTCTTGC 58.990 55.000 0.00 0.00 40.20 4.01
2247 2441 2.672961 TCCGGTTGTAGATGCTCTTG 57.327 50.000 0.00 0.00 0.00 3.02
2248 2442 2.567615 ACTTCCGGTTGTAGATGCTCTT 59.432 45.455 0.00 0.00 0.00 2.85
2249 2443 2.180276 ACTTCCGGTTGTAGATGCTCT 58.820 47.619 0.00 0.00 0.00 4.09
2250 2444 2.674796 ACTTCCGGTTGTAGATGCTC 57.325 50.000 0.00 0.00 0.00 4.26
2251 2445 3.704566 TGATACTTCCGGTTGTAGATGCT 59.295 43.478 0.00 0.00 0.00 3.79
2252 2446 4.054780 TGATACTTCCGGTTGTAGATGC 57.945 45.455 0.00 0.00 0.00 3.91
2253 2447 6.978343 TTTTGATACTTCCGGTTGTAGATG 57.022 37.500 0.00 0.00 0.00 2.90
2254 2448 6.766467 GGATTTTGATACTTCCGGTTGTAGAT 59.234 38.462 0.00 0.00 0.00 1.98
2255 2449 6.110707 GGATTTTGATACTTCCGGTTGTAGA 58.889 40.000 0.00 0.00 0.00 2.59
2256 2450 5.296035 GGGATTTTGATACTTCCGGTTGTAG 59.704 44.000 0.00 0.00 0.00 2.74
2257 2451 5.187687 GGGATTTTGATACTTCCGGTTGTA 58.812 41.667 0.00 6.56 0.00 2.41
2258 2452 4.014406 GGGATTTTGATACTTCCGGTTGT 58.986 43.478 0.00 4.19 0.00 3.32
2259 2453 3.380320 GGGGATTTTGATACTTCCGGTTG 59.620 47.826 0.00 0.00 0.00 3.77
2260 2454 3.010808 TGGGGATTTTGATACTTCCGGTT 59.989 43.478 0.00 0.00 0.00 4.44
2261 2455 2.578940 TGGGGATTTTGATACTTCCGGT 59.421 45.455 0.00 0.00 0.00 5.28
2262 2456 3.290948 TGGGGATTTTGATACTTCCGG 57.709 47.619 0.00 0.00 0.00 5.14
2263 2457 5.652994 TTTTGGGGATTTTGATACTTCCG 57.347 39.130 0.00 0.00 0.00 4.30
2264 2458 7.041721 GTCATTTTGGGGATTTTGATACTTCC 58.958 38.462 0.00 0.00 0.00 3.46
2265 2459 7.041721 GGTCATTTTGGGGATTTTGATACTTC 58.958 38.462 0.00 0.00 0.00 3.01
2266 2460 6.350949 CGGTCATTTTGGGGATTTTGATACTT 60.351 38.462 0.00 0.00 0.00 2.24
2267 2461 5.127031 CGGTCATTTTGGGGATTTTGATACT 59.873 40.000 0.00 0.00 0.00 2.12
2268 2462 5.105513 ACGGTCATTTTGGGGATTTTGATAC 60.106 40.000 0.00 0.00 0.00 2.24
2269 2463 5.020132 ACGGTCATTTTGGGGATTTTGATA 58.980 37.500 0.00 0.00 0.00 2.15
2270 2464 3.837731 ACGGTCATTTTGGGGATTTTGAT 59.162 39.130 0.00 0.00 0.00 2.57
2271 2465 3.006323 CACGGTCATTTTGGGGATTTTGA 59.994 43.478 0.00 0.00 0.00 2.69
2272 2466 3.324993 CACGGTCATTTTGGGGATTTTG 58.675 45.455 0.00 0.00 0.00 2.44
2273 2467 2.301583 CCACGGTCATTTTGGGGATTTT 59.698 45.455 0.00 0.00 0.00 1.82
2274 2468 1.899142 CCACGGTCATTTTGGGGATTT 59.101 47.619 0.00 0.00 0.00 2.17
2275 2469 1.076350 TCCACGGTCATTTTGGGGATT 59.924 47.619 0.00 0.00 0.00 3.01
2276 2470 0.701731 TCCACGGTCATTTTGGGGAT 59.298 50.000 0.00 0.00 0.00 3.85
2277 2471 0.250989 GTCCACGGTCATTTTGGGGA 60.251 55.000 0.00 0.00 0.00 4.81
2278 2472 0.538516 TGTCCACGGTCATTTTGGGG 60.539 55.000 0.00 0.00 0.00 4.96
2279 2473 0.596082 GTGTCCACGGTCATTTTGGG 59.404 55.000 0.00 0.00 0.00 4.12
2280 2474 1.001815 GTGTGTCCACGGTCATTTTGG 60.002 52.381 0.00 0.00 0.00 3.28
2281 2475 1.001815 GGTGTGTCCACGGTCATTTTG 60.002 52.381 0.00 0.00 42.80 2.44
2282 2476 1.314730 GGTGTGTCCACGGTCATTTT 58.685 50.000 0.00 0.00 42.80 1.82
2283 2477 0.536460 GGGTGTGTCCACGGTCATTT 60.536 55.000 0.00 0.00 42.80 2.32
2284 2478 1.072505 GGGTGTGTCCACGGTCATT 59.927 57.895 0.00 0.00 42.80 2.57
2285 2479 2.747686 GGGTGTGTCCACGGTCAT 59.252 61.111 0.00 0.00 42.80 3.06
2286 2480 3.552384 GGGGTGTGTCCACGGTCA 61.552 66.667 0.00 0.00 42.80 4.02
2291 2485 2.890766 ATGTCCGGGGTGTGTCCAC 61.891 63.158 0.00 0.00 41.06 4.02
2292 2486 2.528127 ATGTCCGGGGTGTGTCCA 60.528 61.111 0.00 0.00 38.11 4.02
2293 2487 2.046314 CATGTCCGGGGTGTGTCC 60.046 66.667 0.00 0.00 0.00 4.02
2294 2488 0.953960 GAACATGTCCGGGGTGTGTC 60.954 60.000 0.00 2.19 0.00 3.67
2295 2489 1.072505 GAACATGTCCGGGGTGTGT 59.927 57.895 0.00 0.00 0.00 3.72
2296 2490 0.322456 ATGAACATGTCCGGGGTGTG 60.322 55.000 0.00 0.00 0.00 3.82
2297 2491 0.322456 CATGAACATGTCCGGGGTGT 60.322 55.000 0.00 0.97 34.23 4.16
2298 2492 1.031571 CCATGAACATGTCCGGGGTG 61.032 60.000 0.00 0.24 37.11 4.61
2299 2493 1.204786 TCCATGAACATGTCCGGGGT 61.205 55.000 0.00 0.00 37.11 4.95
2300 2494 0.748005 GTCCATGAACATGTCCGGGG 60.748 60.000 0.00 0.00 37.11 5.73
2301 2495 0.035534 TGTCCATGAACATGTCCGGG 60.036 55.000 0.00 0.00 37.11 5.73
2302 2496 1.372582 CTGTCCATGAACATGTCCGG 58.627 55.000 12.74 0.00 37.11 5.14
2303 2497 0.729116 GCTGTCCATGAACATGTCCG 59.271 55.000 12.74 4.84 37.11 4.79
2304 2498 0.729116 CGCTGTCCATGAACATGTCC 59.271 55.000 12.74 0.00 37.11 4.02
2305 2499 1.394917 GTCGCTGTCCATGAACATGTC 59.605 52.381 12.74 7.02 37.11 3.06
2306 2500 1.442769 GTCGCTGTCCATGAACATGT 58.557 50.000 12.74 0.00 37.11 3.21
2307 2501 0.729116 GGTCGCTGTCCATGAACATG 59.271 55.000 7.70 7.70 38.51 3.21
2308 2502 0.740868 CGGTCGCTGTCCATGAACAT 60.741 55.000 0.00 0.00 0.00 2.71
2309 2503 1.374125 CGGTCGCTGTCCATGAACA 60.374 57.895 0.00 0.00 0.00 3.18
2310 2504 2.100631 CCGGTCGCTGTCCATGAAC 61.101 63.158 0.00 0.00 0.00 3.18
2311 2505 2.264480 CCGGTCGCTGTCCATGAA 59.736 61.111 0.00 0.00 0.00 2.57
2312 2506 2.678580 TCCGGTCGCTGTCCATGA 60.679 61.111 0.00 0.00 0.00 3.07
2313 2507 1.663379 TAGTCCGGTCGCTGTCCATG 61.663 60.000 0.00 0.00 0.00 3.66
2314 2508 1.379443 TAGTCCGGTCGCTGTCCAT 60.379 57.895 0.00 0.00 0.00 3.41
2315 2509 2.034532 TAGTCCGGTCGCTGTCCA 59.965 61.111 0.00 0.00 0.00 4.02
2316 2510 2.338015 TGTAGTCCGGTCGCTGTCC 61.338 63.158 0.00 0.00 0.00 4.02
2317 2511 1.154073 GTGTAGTCCGGTCGCTGTC 60.154 63.158 0.00 0.00 0.00 3.51
2318 2512 1.900016 TGTGTAGTCCGGTCGCTGT 60.900 57.895 0.00 0.00 0.00 4.40
2319 2513 1.443872 GTGTGTAGTCCGGTCGCTG 60.444 63.158 0.00 0.00 0.00 5.18
2320 2514 1.457823 TTGTGTGTAGTCCGGTCGCT 61.458 55.000 0.00 0.90 0.00 4.93
2321 2515 0.598158 TTTGTGTGTAGTCCGGTCGC 60.598 55.000 0.00 0.00 0.00 5.19
2322 2516 1.855513 TTTTGTGTGTAGTCCGGTCG 58.144 50.000 0.00 0.00 0.00 4.79
2323 2517 4.823790 AATTTTTGTGTGTAGTCCGGTC 57.176 40.909 0.00 0.00 0.00 4.79
2324 2518 5.413523 GGATAATTTTTGTGTGTAGTCCGGT 59.586 40.000 0.00 0.00 0.00 5.28
2325 2519 5.446741 CGGATAATTTTTGTGTGTAGTCCGG 60.447 44.000 0.00 0.00 40.68 5.14
2326 2520 5.556470 CGGATAATTTTTGTGTGTAGTCCG 58.444 41.667 0.00 0.00 38.86 4.79
2327 2521 5.123344 AGCGGATAATTTTTGTGTGTAGTCC 59.877 40.000 0.00 0.00 0.00 3.85
2328 2522 6.178239 AGCGGATAATTTTTGTGTGTAGTC 57.822 37.500 0.00 0.00 0.00 2.59
2329 2523 6.651643 TGTAGCGGATAATTTTTGTGTGTAGT 59.348 34.615 0.00 0.00 0.00 2.73
2330 2524 7.067532 TGTAGCGGATAATTTTTGTGTGTAG 57.932 36.000 0.00 0.00 0.00 2.74
2331 2525 7.618502 ATGTAGCGGATAATTTTTGTGTGTA 57.381 32.000 0.00 0.00 0.00 2.90
2332 2526 5.950758 TGTAGCGGATAATTTTTGTGTGT 57.049 34.783 0.00 0.00 0.00 3.72
2333 2527 7.026562 TGAATGTAGCGGATAATTTTTGTGTG 58.973 34.615 0.00 0.00 0.00 3.82
2334 2528 7.151999 TGAATGTAGCGGATAATTTTTGTGT 57.848 32.000 0.00 0.00 0.00 3.72
2335 2529 7.914871 TCATGAATGTAGCGGATAATTTTTGTG 59.085 33.333 0.00 0.00 0.00 3.33
2336 2530 7.995289 TCATGAATGTAGCGGATAATTTTTGT 58.005 30.769 0.00 0.00 0.00 2.83
2337 2531 8.745837 GTTCATGAATGTAGCGGATAATTTTTG 58.254 33.333 12.12 0.00 0.00 2.44
2338 2532 7.920682 GGTTCATGAATGTAGCGGATAATTTTT 59.079 33.333 12.12 0.00 0.00 1.94
2339 2533 7.285401 AGGTTCATGAATGTAGCGGATAATTTT 59.715 33.333 12.12 0.00 32.00 1.82
2340 2534 6.772716 AGGTTCATGAATGTAGCGGATAATTT 59.227 34.615 12.12 0.00 32.00 1.82
2341 2535 6.299141 AGGTTCATGAATGTAGCGGATAATT 58.701 36.000 12.12 0.00 32.00 1.40
2342 2536 5.869579 AGGTTCATGAATGTAGCGGATAAT 58.130 37.500 12.12 0.00 32.00 1.28
2343 2537 5.163353 TGAGGTTCATGAATGTAGCGGATAA 60.163 40.000 12.12 0.00 32.00 1.75
2344 2538 4.343814 TGAGGTTCATGAATGTAGCGGATA 59.656 41.667 12.12 0.00 32.00 2.59
2345 2539 3.134623 TGAGGTTCATGAATGTAGCGGAT 59.865 43.478 12.12 0.00 32.00 4.18
2346 2540 2.499693 TGAGGTTCATGAATGTAGCGGA 59.500 45.455 12.12 0.00 32.00 5.54
2347 2541 2.905075 TGAGGTTCATGAATGTAGCGG 58.095 47.619 12.12 0.00 32.00 5.52
2348 2542 4.393062 AGTTTGAGGTTCATGAATGTAGCG 59.607 41.667 12.12 0.00 32.00 4.26
2349 2543 5.886960 AGTTTGAGGTTCATGAATGTAGC 57.113 39.130 12.12 0.00 0.00 3.58
2352 2546 8.739972 GGTATAAAGTTTGAGGTTCATGAATGT 58.260 33.333 12.12 1.52 0.00 2.71
2353 2547 8.960591 AGGTATAAAGTTTGAGGTTCATGAATG 58.039 33.333 12.12 0.00 0.00 2.67
2354 2548 9.178758 GAGGTATAAAGTTTGAGGTTCATGAAT 57.821 33.333 12.12 0.00 0.00 2.57
2355 2549 8.160765 TGAGGTATAAAGTTTGAGGTTCATGAA 58.839 33.333 3.38 3.38 0.00 2.57
2356 2550 7.685481 TGAGGTATAAAGTTTGAGGTTCATGA 58.315 34.615 0.00 0.00 0.00 3.07
2357 2551 7.921786 TGAGGTATAAAGTTTGAGGTTCATG 57.078 36.000 0.00 0.00 0.00 3.07
2358 2552 8.164070 ACTTGAGGTATAAAGTTTGAGGTTCAT 58.836 33.333 0.00 0.00 32.75 2.57
2359 2553 7.514721 ACTTGAGGTATAAAGTTTGAGGTTCA 58.485 34.615 0.00 0.00 32.75 3.18
2360 2554 7.660208 TGACTTGAGGTATAAAGTTTGAGGTTC 59.340 37.037 0.00 0.00 36.77 3.62
2361 2555 7.514721 TGACTTGAGGTATAAAGTTTGAGGTT 58.485 34.615 0.00 0.00 36.77 3.50
2362 2556 7.074653 TGACTTGAGGTATAAAGTTTGAGGT 57.925 36.000 0.00 0.00 36.77 3.85
2363 2557 7.414540 GCATGACTTGAGGTATAAAGTTTGAGG 60.415 40.741 0.00 0.00 36.77 3.86
2364 2558 7.414540 GGCATGACTTGAGGTATAAAGTTTGAG 60.415 40.741 0.00 0.00 36.77 3.02
2365 2559 6.374333 GGCATGACTTGAGGTATAAAGTTTGA 59.626 38.462 0.00 0.00 36.77 2.69
2366 2560 6.555315 GGCATGACTTGAGGTATAAAGTTTG 58.445 40.000 0.00 0.00 36.77 2.93
2367 2561 5.354234 CGGCATGACTTGAGGTATAAAGTTT 59.646 40.000 0.00 0.00 36.77 2.66
2368 2562 4.876107 CGGCATGACTTGAGGTATAAAGTT 59.124 41.667 0.00 0.00 36.77 2.66
2369 2563 4.442706 CGGCATGACTTGAGGTATAAAGT 58.557 43.478 0.00 0.00 39.31 2.66
2370 2564 3.248602 GCGGCATGACTTGAGGTATAAAG 59.751 47.826 0.00 0.00 0.00 1.85
2371 2565 3.202906 GCGGCATGACTTGAGGTATAAA 58.797 45.455 0.00 0.00 0.00 1.40
2372 2566 2.801699 CGCGGCATGACTTGAGGTATAA 60.802 50.000 0.00 0.00 0.00 0.98
2373 2567 1.269569 CGCGGCATGACTTGAGGTATA 60.270 52.381 0.00 0.00 0.00 1.47
2374 2568 0.530650 CGCGGCATGACTTGAGGTAT 60.531 55.000 0.00 0.00 0.00 2.73
2375 2569 1.153647 CGCGGCATGACTTGAGGTA 60.154 57.895 0.00 0.00 0.00 3.08
2376 2570 1.884075 TACGCGGCATGACTTGAGGT 61.884 55.000 12.47 0.00 0.00 3.85
2377 2571 0.530650 ATACGCGGCATGACTTGAGG 60.531 55.000 12.47 0.00 0.00 3.86
2378 2572 1.787155 GTATACGCGGCATGACTTGAG 59.213 52.381 12.47 0.00 0.00 3.02
2379 2573 1.135333 TGTATACGCGGCATGACTTGA 59.865 47.619 12.47 0.00 0.00 3.02
2380 2574 1.566404 TGTATACGCGGCATGACTTG 58.434 50.000 12.47 0.00 0.00 3.16
2381 2575 2.035961 AGATGTATACGCGGCATGACTT 59.964 45.455 12.47 0.00 0.00 3.01
2382 2576 1.613925 AGATGTATACGCGGCATGACT 59.386 47.619 12.47 0.00 0.00 3.41
2383 2577 2.065993 AGATGTATACGCGGCATGAC 57.934 50.000 12.47 0.00 0.00 3.06
2384 2578 2.812358 AAGATGTATACGCGGCATGA 57.188 45.000 12.47 0.00 0.00 3.07
2385 2579 4.447724 AGTTTAAGATGTATACGCGGCATG 59.552 41.667 12.47 0.00 0.00 4.06
2386 2580 4.628074 AGTTTAAGATGTATACGCGGCAT 58.372 39.130 12.47 9.27 0.00 4.40
2387 2581 4.049546 AGTTTAAGATGTATACGCGGCA 57.950 40.909 12.47 4.04 0.00 5.69
2388 2582 6.701432 AATAGTTTAAGATGTATACGCGGC 57.299 37.500 12.47 0.00 0.00 6.53
2404 2598 9.764363 TTCGATCTGCATGACTATAAATAGTTT 57.236 29.630 0.00 0.00 43.27 2.66
2405 2599 9.764363 TTTCGATCTGCATGACTATAAATAGTT 57.236 29.630 0.00 0.00 43.27 2.24
2406 2600 9.764363 TTTTCGATCTGCATGACTATAAATAGT 57.236 29.630 0.00 2.26 45.73 2.12
2408 2602 8.988934 GGTTTTCGATCTGCATGACTATAAATA 58.011 33.333 0.00 0.00 0.00 1.40
2409 2603 7.716998 AGGTTTTCGATCTGCATGACTATAAAT 59.283 33.333 0.00 0.00 0.00 1.40
2410 2604 7.047891 AGGTTTTCGATCTGCATGACTATAAA 58.952 34.615 0.00 0.00 0.00 1.40
2411 2605 6.582636 AGGTTTTCGATCTGCATGACTATAA 58.417 36.000 0.00 0.00 0.00 0.98
2412 2606 6.161855 AGGTTTTCGATCTGCATGACTATA 57.838 37.500 0.00 0.00 0.00 1.31
2413 2607 5.028549 AGGTTTTCGATCTGCATGACTAT 57.971 39.130 0.00 0.00 0.00 2.12
2414 2608 4.471904 AGGTTTTCGATCTGCATGACTA 57.528 40.909 0.00 0.00 0.00 2.59
2415 2609 3.340814 AGGTTTTCGATCTGCATGACT 57.659 42.857 0.00 0.00 0.00 3.41
2416 2610 4.572389 ACATAGGTTTTCGATCTGCATGAC 59.428 41.667 0.00 0.00 0.00 3.06
2417 2611 4.769688 ACATAGGTTTTCGATCTGCATGA 58.230 39.130 0.00 0.00 0.00 3.07
2418 2612 5.755375 AGTACATAGGTTTTCGATCTGCATG 59.245 40.000 0.00 0.00 0.00 4.06
2419 2613 5.918608 AGTACATAGGTTTTCGATCTGCAT 58.081 37.500 0.00 0.00 0.00 3.96
2420 2614 5.339008 AGTACATAGGTTTTCGATCTGCA 57.661 39.130 0.00 0.00 0.00 4.41
2421 2615 5.398711 CGTAGTACATAGGTTTTCGATCTGC 59.601 44.000 0.38 0.00 0.00 4.26
2422 2616 6.493116 ACGTAGTACATAGGTTTTCGATCTG 58.507 40.000 0.38 0.00 41.94 2.90
2423 2617 6.690194 ACGTAGTACATAGGTTTTCGATCT 57.310 37.500 0.38 0.00 41.94 2.75
2447 2641 9.060347 TCCGACGATAAGTAGTTTAAGATATGT 57.940 33.333 0.00 0.00 0.00 2.29
2448 2642 9.544314 CTCCGACGATAAGTAGTTTAAGATATG 57.456 37.037 0.00 0.00 0.00 1.78
2449 2643 9.499479 TCTCCGACGATAAGTAGTTTAAGATAT 57.501 33.333 0.00 0.00 0.00 1.63
2450 2644 8.893219 TCTCCGACGATAAGTAGTTTAAGATA 57.107 34.615 0.00 0.00 0.00 1.98
2451 2645 7.798596 TCTCCGACGATAAGTAGTTTAAGAT 57.201 36.000 0.00 0.00 0.00 2.40
2452 2646 7.281774 ACATCTCCGACGATAAGTAGTTTAAGA 59.718 37.037 0.00 0.00 0.00 2.10
2453 2647 7.416022 ACATCTCCGACGATAAGTAGTTTAAG 58.584 38.462 0.00 0.00 0.00 1.85
2454 2648 7.325660 ACATCTCCGACGATAAGTAGTTTAA 57.674 36.000 0.00 0.00 0.00 1.52
2455 2649 6.292542 CGACATCTCCGACGATAAGTAGTTTA 60.293 42.308 0.00 0.00 0.00 2.01
2456 2650 5.503683 CGACATCTCCGACGATAAGTAGTTT 60.504 44.000 0.00 0.00 0.00 2.66
2457 2651 4.025061 CGACATCTCCGACGATAAGTAGTT 60.025 45.833 0.00 0.00 0.00 2.24
2458 2652 3.493877 CGACATCTCCGACGATAAGTAGT 59.506 47.826 0.00 0.00 0.00 2.73
2459 2653 3.664798 GCGACATCTCCGACGATAAGTAG 60.665 52.174 0.00 0.00 0.00 2.57
2460 2654 2.222678 GCGACATCTCCGACGATAAGTA 59.777 50.000 0.00 0.00 0.00 2.24
2461 2655 1.002684 GCGACATCTCCGACGATAAGT 60.003 52.381 0.00 0.00 0.00 2.24
2462 2656 1.663445 GGCGACATCTCCGACGATAAG 60.663 57.143 0.00 0.00 0.00 1.73
2463 2657 0.309922 GGCGACATCTCCGACGATAA 59.690 55.000 0.00 0.00 0.00 1.75
2464 2658 1.947013 GGCGACATCTCCGACGATA 59.053 57.895 0.00 0.00 0.00 2.92
2465 2659 2.722487 GGCGACATCTCCGACGAT 59.278 61.111 0.00 0.00 0.00 3.73
2470 2664 2.049985 GGATCGGCGACATCTCCG 60.050 66.667 13.76 3.88 44.89 4.63
2471 2665 1.287503 GAGGATCGGCGACATCTCC 59.712 63.158 13.76 15.96 0.00 3.71
2472 2666 4.955089 GAGGATCGGCGACATCTC 57.045 61.111 13.76 15.41 0.00 2.75
2483 2677 4.593864 GAGCCGGGCACGAGGATC 62.594 72.222 23.09 0.00 44.60 3.36
2497 2691 3.766691 TTGCCCGTCTACCCGAGC 61.767 66.667 0.00 0.00 31.64 5.03
2498 2692 2.183555 GTTGCCCGTCTACCCGAG 59.816 66.667 0.00 0.00 0.00 4.63
2499 2693 2.283388 AGTTGCCCGTCTACCCGA 60.283 61.111 0.00 0.00 0.00 5.14
2500 2694 2.125673 CAGTTGCCCGTCTACCCG 60.126 66.667 0.00 0.00 0.00 5.28
2501 2695 2.436115 GCAGTTGCCCGTCTACCC 60.436 66.667 0.00 0.00 34.31 3.69
2502 2696 1.741770 CTGCAGTTGCCCGTCTACC 60.742 63.158 5.25 0.00 41.18 3.18
2503 2697 2.391389 GCTGCAGTTGCCCGTCTAC 61.391 63.158 16.64 0.00 41.18 2.59
2504 2698 2.047274 GCTGCAGTTGCCCGTCTA 60.047 61.111 16.64 0.00 41.18 2.59
2505 2699 4.254709 TGCTGCAGTTGCCCGTCT 62.255 61.111 16.64 0.00 41.18 4.18
2506 2700 3.730761 CTGCTGCAGTTGCCCGTC 61.731 66.667 21.21 0.00 41.18 4.79
2509 2703 3.745803 GAGCTGCTGCAGTTGCCC 61.746 66.667 28.50 13.08 42.74 5.36
2510 2704 3.745803 GGAGCTGCTGCAGTTGCC 61.746 66.667 28.50 22.20 42.74 4.52
2511 2705 4.099170 CGGAGCTGCTGCAGTTGC 62.099 66.667 28.50 26.22 42.74 4.17
2512 2706 3.429141 CCGGAGCTGCTGCAGTTG 61.429 66.667 28.50 16.14 42.74 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.