AutoCloner

Multiple sequence alignment - TraesCS6D01G168600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G168600	chr6D	100.000	2471	0	0	1	2471	153925834	153923364	0.000000e+00	4564.0
1	TraesCS6D01G168600	chr6D	88.104	269	18	12	1840	2101	153924031	153923770	8.580000e-80	307.0
2	TraesCS6D01G168600	chr6D	89.744	156	9	5	1804	1954	153923887	153923734	2.510000e-45	193.0
3	TraesCS6D01G168600	chrUn	96.943	1897	51	3	1	1894	86467992	86466100	0.000000e+00	3175.0
4	TraesCS6D01G168600	chrUn	94.853	136	7	0	1876	2011	86466190	86466055	1.920000e-51	213.0
5	TraesCS6D01G168600	chrUn	94.853	136	7	0	1876	2011	449375813	449375678	1.920000e-51	213.0
6	TraesCS6D01G168600	chr6A	96.890	1897	52	3	1	1894	64687533	64685641	0.000000e+00	3169.0
7	TraesCS6D01G168600	chr6A	94.853	136	7	0	1876	2011	64685731	64685596	1.920000e-51	213.0
8	TraesCS6D01G168600	chr3A	95.331	1992	59	12	1	1966	633121764	633123747	0.000000e+00	3133.0
9	TraesCS6D01G168600	chr3A	94.915	59	3	0	2401	2459	431364155	431364213	2.620000e-15	93.5
10	TraesCS6D01G168600	chr7A	96.417	1898	59	5	1	1894	60253098	60254990	0.000000e+00	3120.0
11	TraesCS6D01G168600	chr7A	96.512	86	2	1	2386	2471	640544525	640544441	9.210000e-30	141.0
12	TraesCS6D01G168600	chr1B	95.068	1987	73	8	1	1966	672580352	672578370	0.000000e+00	3103.0
13	TraesCS6D01G168600	chr6B	93.956	2068	93	26	1	2065	625629403	625627365	0.000000e+00	3097.0
14	TraesCS6D01G168600	chr6B	91.651	527	23	5	1876	2381	625627605	625627079	0.000000e+00	710.0
15	TraesCS6D01G168600	chr6B	91.048	525	28	5	1876	2381	297448630	297449154	0.000000e+00	691.0
16	TraesCS6D01G168600	chr6B	92.184	499	21	3	1876	2356	215778783	215779281	0.000000e+00	689.0
17	TraesCS6D01G168600	chr6B	94.828	116	6	0	1839	1954	625627480	625627365	5.430000e-42	182.0
18	TraesCS6D01G168600	chr6B	93.966	116	7	0	1839	1954	215778908	215779023	2.530000e-40	176.0
19	TraesCS6D01G168600	chr6B	93.103	116	8	0	1839	1954	297448755	297448870	1.180000e-38	171.0
20	TraesCS6D01G168600	chr4B	96.046	1897	68	3	1	1894	209133145	209135037	0.000000e+00	3081.0
21	TraesCS6D01G168600	chr4B	90.998	511	20	9	1876	2381	209283998	209284487	0.000000e+00	665.0
22	TraesCS6D01G168600	chr4B	90.607	511	22	9	1876	2381	209062408	209061919	0.000000e+00	654.0
23	TraesCS6D01G168600	chr3D	94.226	1957	88	18	3	1954	523715695	523713759	0.000000e+00	2964.0
24	TraesCS6D01G168600	chr2D	95.790	1829	64	5	1	1827	604414184	604412367	0.000000e+00	2939.0
25	TraesCS6D01G168600	chr2D	96.154	416	14	2	2058	2471	382488511	382488926	0.000000e+00	678.0
26	TraesCS6D01G168600	chr2D	95.090	387	15	4	1999	2381	189921724	189922110	7.560000e-170	606.0
27	TraesCS6D01G168600	chr2D	96.000	75	3	0	2397	2471	186992204	186992278	3.340000e-24	122.0
28	TraesCS6D01G168600	chr7B	92.381	525	21	5	1876	2381	139531202	139530678	0.000000e+00	730.0
29	TraesCS6D01G168600	chr7B	90.909	440	30	8	1947	2381	52969795	52969361	1.270000e-162	582.0
30	TraesCS6D01G168600	chr5D	91.887	530	25	10	1948	2471	324471367	324470850	0.000000e+00	725.0
31	TraesCS6D01G168600	chr3B	92.814	501	19	3	1876	2359	483376218	483376718	0.000000e+00	710.0
32	TraesCS6D01G168600	chr3B	93.333	465	11	5	1912	2359	669840702	669840241	0.000000e+00	669.0
33	TraesCS6D01G168600	chr3B	98.276	116	2	0	1839	1954	669840614	669840499	1.160000e-48	204.0
34	TraesCS6D01G168600	chr3B	93.103	116	8	0	1839	1954	483376343	483376458	1.180000e-38	171.0
35	TraesCS6D01G168600	chr3B	83.425	181	12	5	1804	1966	483376254	483376434	4.260000e-33	152.0
36	TraesCS6D01G168600	chr5B	97.590	166	2	2	2307	2471	567249971	567250135	1.450000e-72	283.0
37	TraesCS6D01G168600	chr5A	100.000	56	0	0	2389	2444	334557083	334557138	1.210000e-18	104.0
38	TraesCS6D01G168600	chr5A	100.000	54	0	0	2389	2442	334532317	334532370	1.560000e-17	100.0
39	TraesCS6D01G168600	chr2A	100.000	47	0	0	2414	2460	17075814	17075860	1.220000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G168600	chr6D	153923364	153925834	2470	True	1688.000000	4564	92.616000	1	2471	3	chr6D.!!$R1	2470
1	TraesCS6D01G168600	chrUn	86466055	86467992	1937	True	1694.000000	3175	95.898000	1	2011	2	chrUn.!!$R2	2010
2	TraesCS6D01G168600	chr6A	64685596	64687533	1937	True	1691.000000	3169	95.871500	1	2011	2	chr6A.!!$R1	2010
3	TraesCS6D01G168600	chr3A	633121764	633123747	1983	False	3133.000000	3133	95.331000	1	1966	1	chr3A.!!$F2	1965
4	TraesCS6D01G168600	chr7A	60253098	60254990	1892	False	3120.000000	3120	96.417000	1	1894	1	chr7A.!!$F1	1893
5	TraesCS6D01G168600	chr1B	672578370	672580352	1982	True	3103.000000	3103	95.068000	1	1966	1	chr1B.!!$R1	1965
6	TraesCS6D01G168600	chr6B	625627079	625629403	2324	True	1329.666667	3097	93.478333	1	2381	3	chr6B.!!$R1	2380
7	TraesCS6D01G168600	chr6B	297448630	297449154	524	False	431.000000	691	92.075500	1839	2381	2	chr6B.!!$F2	542
8	TraesCS6D01G168600	chr4B	209133145	209135037	1892	False	3081.000000	3081	96.046000	1	1894	1	chr4B.!!$F1	1893
9	TraesCS6D01G168600	chr3D	523713759	523715695	1936	True	2964.000000	2964	94.226000	3	1954	1	chr3D.!!$R1	1951
10	TraesCS6D01G168600	chr2D	604412367	604414184	1817	True	2939.000000	2939	95.790000	1	1827	1	chr2D.!!$R1	1826
11	TraesCS6D01G168600	chr7B	139530678	139531202	524	True	730.000000	730	92.381000	1876	2381	1	chr7B.!!$R2	505
12	TraesCS6D01G168600	chr5D	324470850	324471367	517	True	725.000000	725	91.887000	1948	2471	1	chr5D.!!$R1	523
13	TraesCS6D01G168600	chr3B	483376218	483376718	500	False	344.333333	710	89.780667	1804	2359	3	chr3B.!!$F1	555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
775	776	1.667722	CCCAACAAAGGCTTGCTCC	59.332	57.895	0.0	0.0	35.84	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1742	1750	1.51502	CAGAACTCCTCAGCTCCCG	59.485	63.158	0.0	0.0	0.0	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
76	77	1.763968	TGTCTCGTACATAGCCAGCT	58.236	50.000	0.00	0.00	31.43	4.24
189	190	3.673809	GCATAGCGTTAGTATCTTTCGGG	59.326	47.826	0.00	0.00	0.00	5.14
223	224	6.294473	ACATAGGCACCTGATCTATTTGAAG	58.706	40.000	0.00	0.00	0.00	3.02
304	305	3.527665	CCTTTCCCTAAATCCTTCTCCCA	59.472	47.826	0.00	0.00	0.00	4.37
431	432	2.245582	AGTTCGTAGTAACAGGTGGCT	58.754	47.619	0.00	0.00	0.00	4.75
438	439	2.047061	AGTAACAGGTGGCTGTTGAGA	58.953	47.619	0.00	0.00	45.83	3.27
609	610	2.642311	TGAGGGCTTTGTGTTGGATCTA	59.358	45.455	0.00	0.00	0.00	1.98
633	634	2.159114	GGTTGAGCCTTTGTTCTTTGCA	60.159	45.455	0.00	0.00	0.00	4.08
775	776	1.667722	CCCAACAAAGGCTTGCTCC	59.332	57.895	0.00	0.00	35.84	4.70
811	812	3.491267	CCAAACTCTTTCTCGTGTGACTC	59.509	47.826	0.00	0.00	0.00	3.36
873	874	3.324108	TACCCGGGCAGACAACCC	61.324	66.667	24.08	0.00	44.63	4.11
968	969	4.520492	AGAAAAAGTACGGTTCGGAGTCTA	59.480	41.667	0.00	0.00	0.00	2.59
1059	1061	7.693969	ATTTTTCTGGTTATGTCTTCTCCTG	57.306	36.000	0.00	0.00	0.00	3.86
1215	1222	9.589111	GAAGATATCTCGAGAAAAGGTTTTAGT	57.411	33.333	20.91	0.19	0.00	2.24
1338	1345	4.875544	TTTCGGAGAAATAATTGGCTCG	57.124	40.909	0.00	0.00	45.90	5.03
1353	1360	1.299773	CTCGCGAGGAATGGAGAGC	60.300	63.158	28.40	0.00	0.00	4.09
1541	1548	9.851686	ATGATTGTGACAGCTTTTATAGGATAA	57.148	29.630	0.00	0.00	0.00	1.75
1621	1628	1.269998	CGCCATACCAGTAGTAGGAGC	59.730	57.143	0.00	0.00	34.60	4.70
1677	1684	4.080975	CCATGGACAATGCCACCTTAAATT	60.081	41.667	5.56	0.00	41.56	1.82
1783	1791	3.741325	GGCAGCCCCCTTCTCTAA	58.259	61.111	0.00	0.00	0.00	2.10
1794	1802	5.422012	GCCCCCTTCTCTAAATCATGAAAAA	59.578	40.000	0.00	0.00	0.00	1.94
1801	1812	9.224267	CTTCTCTAAATCATGAAAAAGTGGAGA	57.776	33.333	0.00	3.28	0.00	3.71
1802	1813	8.783833	TCTCTAAATCATGAAAAAGTGGAGAG	57.216	34.615	0.00	4.27	0.00	3.20
1803	1814	8.378565	TCTCTAAATCATGAAAAAGTGGAGAGT	58.621	33.333	0.00	0.00	0.00	3.24
1804	1815	8.327941	TCTAAATCATGAAAAAGTGGAGAGTG	57.672	34.615	0.00	0.00	0.00	3.51
1805	1816	8.156820	TCTAAATCATGAAAAAGTGGAGAGTGA	58.843	33.333	0.00	0.00	0.00	3.41
1806	1817	7.771927	AAATCATGAAAAAGTGGAGAGTGAT	57.228	32.000	0.00	0.00	0.00	3.06
1807	1818	6.754702	ATCATGAAAAAGTGGAGAGTGATG	57.245	37.500	0.00	0.00	0.00	3.07
1808	1819	5.868454	TCATGAAAAAGTGGAGAGTGATGA	58.132	37.500	0.00	0.00	0.00	2.92
1809	1820	6.479006	TCATGAAAAAGTGGAGAGTGATGAT	58.521	36.000	0.00	0.00	0.00	2.45
1810	1821	6.944290	TCATGAAAAAGTGGAGAGTGATGATT	59.056	34.615	0.00	0.00	0.00	2.57
1811	1822	6.808008	TGAAAAAGTGGAGAGTGATGATTC	57.192	37.500	0.00	0.00	0.00	2.52
1812	1823	6.298361	TGAAAAAGTGGAGAGTGATGATTCA	58.702	36.000	0.00	0.00	0.00	2.57
1813	1824	6.944290	TGAAAAAGTGGAGAGTGATGATTCAT	59.056	34.615	0.00	0.00	33.56	2.57
1814	1825	6.998968	AAAAGTGGAGAGTGATGATTCATC	57.001	37.500	17.97	17.97	40.88	2.92
1815	1826	5.688814	AAGTGGAGAGTGATGATTCATCA	57.311	39.130	22.47	22.47	46.84	3.07
1842	1853	5.908562	ATGAATCAGGGAGTTCATCTGAT	57.091	39.130	9.78	9.78	46.49	2.90
1843	1854	5.032327	TGAATCAGGGAGTTCATCTGATG	57.968	43.478	11.42	11.42	44.56	3.07
1951	1962	5.032327	TGAATCAGGGAGTTCATCTGATG	57.968	43.478	11.42	11.42	44.56	3.07
2051	2308	2.775911	TCAACTGATGAAGCAGGGAG	57.224	50.000	0.09	0.00	40.20	4.30
2052	2309	1.980765	TCAACTGATGAAGCAGGGAGT	59.019	47.619	0.09	0.00	40.20	3.85
2053	2310	2.373169	TCAACTGATGAAGCAGGGAGTT	59.627	45.455	0.09	0.00	40.20	3.01
2054	2311	2.746362	CAACTGATGAAGCAGGGAGTTC	59.254	50.000	0.09	0.00	40.20	3.01
2055	2312	1.980765	ACTGATGAAGCAGGGAGTTCA	59.019	47.619	0.09	0.00	40.20	3.18
2056	2313	2.575279	ACTGATGAAGCAGGGAGTTCAT	59.425	45.455	0.09	0.00	44.35	2.57
2059	2316	2.775911	TGAAGCAGGGAGTTCATCTG	57.224	50.000	0.00	0.00	0.00	2.90
2060	2317	2.259917	TGAAGCAGGGAGTTCATCTGA	58.740	47.619	0.00	0.00	0.00	3.27
2061	2318	2.842496	TGAAGCAGGGAGTTCATCTGAT	59.158	45.455	0.00	0.00	0.00	2.90
2062	2319	3.118482	TGAAGCAGGGAGTTCATCTGATC	60.118	47.826	0.00	0.00	0.00	2.92
2063	2320	2.475155	AGCAGGGAGTTCATCTGATCA	58.525	47.619	0.00	0.00	0.00	2.92
2064	2321	3.047115	AGCAGGGAGTTCATCTGATCAT	58.953	45.455	0.00	0.00	0.00	2.45
2065	2322	3.458857	AGCAGGGAGTTCATCTGATCATT	59.541	43.478	0.00	0.00	0.00	2.57
2066	2323	3.814283	GCAGGGAGTTCATCTGATCATTC	59.186	47.826	0.00	0.00	0.00	2.67
2067	2324	4.685302	GCAGGGAGTTCATCTGATCATTCA	60.685	45.833	0.00	0.00	0.00	2.57
2068	2325	5.622180	CAGGGAGTTCATCTGATCATTCAT	58.378	41.667	0.00	0.00	0.00	2.57
2069	2326	5.701750	CAGGGAGTTCATCTGATCATTCATC	59.298	44.000	0.00	0.00	0.00	2.92
2070	2327	5.368816	AGGGAGTTCATCTGATCATTCATCA	59.631	40.000	0.00	0.00	39.39	3.07
2071	2328	6.060136	GGGAGTTCATCTGATCATTCATCAA	58.940	40.000	0.00	0.00	41.25	2.57
2072	2329	6.017275	GGGAGTTCATCTGATCATTCATCAAC	60.017	42.308	0.00	0.00	41.25	3.18
2073	2330	6.766944	GGAGTTCATCTGATCATTCATCAACT	59.233	38.462	0.00	0.00	41.25	3.16
2074	2331	7.254829	GGAGTTCATCTGATCATTCATCAACTG	60.255	40.741	0.00	0.00	41.25	3.16
2075	2332	7.336396	AGTTCATCTGATCATTCATCAACTGA	58.664	34.615	0.00	0.00	41.25	3.41
2076	2333	7.993758	AGTTCATCTGATCATTCATCAACTGAT	59.006	33.333	0.00	0.00	41.25	2.90
2407	2670	1.423921	AGGAAAGGAAGGGAGCGAAAA	59.576	47.619	0.00	0.00	0.00	2.29
2408	2671	1.813178	GGAAAGGAAGGGAGCGAAAAG	59.187	52.381	0.00	0.00	0.00	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
189	190	3.627577	CAGGTGCCTATGTTGTTGATACC	59.372	47.826	0.00	0.00	0.00	2.73
223	224	6.311935	GTGAAAACTTCCCTTGTGGTTTAAAC	59.688	38.462	9.98	9.98	32.57	2.01
304	305	3.484407	GGAACAGGAGAATAGCATGCAT	58.516	45.455	21.98	8.63	0.00	3.96
431	432	7.038302	ACCAATAGTCAAACTAGGATCTCAACA	60.038	37.037	0.00	0.00	33.66	3.33
438	439	4.227300	TGGCACCAATAGTCAAACTAGGAT	59.773	41.667	0.00	0.00	33.66	3.24
609	610	4.696455	CAAAGAACAAAGGCTCAACCATT	58.304	39.130	0.00	0.00	43.14	3.16
661	662	4.437682	AGACCATCAAAGAACTCCACAA	57.562	40.909	0.00	0.00	0.00	3.33
707	708	3.056832	AGGAAGGTGGAAGGAAGAAAGT	58.943	45.455	0.00	0.00	0.00	2.66
775	776	5.317733	AGAGTTTGGACTATGACGAAGAG	57.682	43.478	0.00	0.00	35.88	2.85
828	829	0.328258	CGGAACCCTCCCAAGTCATT	59.672	55.000	0.00	0.00	38.71	2.57
873	874	3.635373	CCATTTCTGATGTGAATGAGGGG	59.365	47.826	2.22	0.00	0.00	4.79
947	948	3.740631	AGACTCCGAACCGTACTTTTT	57.259	42.857	0.00	0.00	0.00	1.94
1215	1222	6.013119	TGGAGTACATATATGAGAGACCGGTA	60.013	42.308	19.63	0.00	0.00	4.02
1331	1338	2.125147	CCATTCCTCGCGAGCCAA	60.125	61.111	30.49	23.36	0.00	4.52
1338	1345	2.903357	TGGCTCTCCATTCCTCGC	59.097	61.111	0.00	0.00	37.47	5.03
1353	1360	9.352784	GACTTCGAGATCAAATAGAGAATATGG	57.647	37.037	0.00	0.00	0.00	2.74
1356	1363	8.698973	AGGACTTCGAGATCAAATAGAGAATA	57.301	34.615	0.00	0.00	0.00	1.75
1621	1628	3.941483	CCAAAGCCAAGTCACTATGGTAG	59.059	47.826	7.57	0.00	39.00	3.18
1742	1750	1.515020	CAGAACTCCTCAGCTCCCG	59.485	63.158	0.00	0.00	0.00	5.14
1778	1786	8.449397	CACTCTCCACTTTTTCATGATTTAGAG	58.551	37.037	0.00	3.93	33.50	2.43
1783	1791	6.944290	TCATCACTCTCCACTTTTTCATGATT	59.056	34.615	0.00	0.00	0.00	2.57
1820	1831	5.368816	TCATCAGATGAACTCCCTGATTCAT	59.631	40.000	10.93	0.00	45.92	2.57
1821	1832	4.718276	TCATCAGATGAACTCCCTGATTCA	59.282	41.667	10.93	0.00	42.97	2.57
1822	1833	5.287674	TCATCAGATGAACTCCCTGATTC	57.712	43.478	10.93	0.00	42.97	2.52
1823	1834	5.908562	ATCATCAGATGAACTCCCTGATT	57.091	39.130	17.24	0.00	42.97	2.57
1824	1835	5.368816	TGAATCATCAGATGAACTCCCTGAT	59.631	40.000	17.24	0.00	45.47	2.90
1825	1836	4.718276	TGAATCATCAGATGAACTCCCTGA	59.282	41.667	17.24	0.00	43.50	3.86
1826	1837	5.032327	TGAATCATCAGATGAACTCCCTG	57.968	43.478	17.24	0.00	43.50	4.45
1827	1838	5.368816	TGATGAATCATCAGATGAACTCCCT	59.631	40.000	20.85	7.28	44.60	4.20
1828	1839	5.618236	TGATGAATCATCAGATGAACTCCC	58.382	41.667	20.85	11.08	44.60	4.30
1858	1869	5.287674	TCATCAGATGAACTCCCTGATTC	57.712	43.478	10.93	0.00	42.97	2.52
1859	1870	5.908562	ATCATCAGATGAACTCCCTGATT	57.091	39.130	17.24	0.00	42.97	2.57
1894	1905	5.287674	TCATCAGATGAACTCCCTGATTC	57.712	43.478	10.93	0.00	42.97	2.52
1895	1906	5.908562	ATCATCAGATGAACTCCCTGATT	57.091	39.130	17.24	0.00	42.97	2.57
1935	1946	5.368816	TGATGAATCATCAGATGAACTCCCT	59.631	40.000	20.85	7.28	44.60	4.20
2041	2298	3.118482	TGATCAGATGAACTCCCTGCTTC	60.118	47.826	0.00	0.00	0.00	3.86
2042	2299	2.842496	TGATCAGATGAACTCCCTGCTT	59.158	45.455	0.00	0.00	0.00	3.91
2043	2300	2.475155	TGATCAGATGAACTCCCTGCT	58.525	47.619	0.00	0.00	0.00	4.24
2044	2301	2.996249	TGATCAGATGAACTCCCTGC	57.004	50.000	0.00	0.00	0.00	4.85
2045	2302	5.032327	TGAATGATCAGATGAACTCCCTG	57.968	43.478	0.09	0.00	0.00	4.45
2046	2303	5.368816	TGATGAATGATCAGATGAACTCCCT	59.631	40.000	0.09	0.00	39.39	4.20
2047	2304	5.618236	TGATGAATGATCAGATGAACTCCC	58.382	41.667	0.09	0.00	39.39	4.30
2048	2305	6.766944	AGTTGATGAATGATCAGATGAACTCC	59.233	38.462	0.09	0.00	42.24	3.85
2049	2306	7.494952	TCAGTTGATGAATGATCAGATGAACTC	59.505	37.037	11.56	0.49	42.24	3.01
2050	2307	7.336396	TCAGTTGATGAATGATCAGATGAACT	58.664	34.615	0.09	6.40	42.24	3.01
2051	2308	7.549615	TCAGTTGATGAATGATCAGATGAAC	57.450	36.000	0.09	4.23	42.24	3.18
2075	2332	5.368816	TCATCAGATGAACTCCCTGATTCAT	59.631	40.000	10.93	0.00	45.92	2.57
2076	2333	4.718276	TCATCAGATGAACTCCCTGATTCA	59.282	41.667	10.93	0.00	42.97	2.57
2077	2334	5.287674	TCATCAGATGAACTCCCTGATTC	57.712	43.478	10.93	0.00	42.97	2.52
2078	2335	5.908562	ATCATCAGATGAACTCCCTGATT	57.091	39.130	17.24	0.00	42.97	2.57
2407	2670	7.123847	AGAGTAGGTGGAAACATTAACGTATCT	59.876	37.037	0.00	0.00	46.14	1.98
2408	2671	7.263496	AGAGTAGGTGGAAACATTAACGTATC	58.737	38.462	0.00	0.00	46.14	2.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.