Multiple sequence alignment - TraesCS6D01G167400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G167400 chr6D 100.000 3075 0 0 1 3075 150154291 150157365 0.000000e+00 5679.0
1 TraesCS6D01G167400 chr6D 94.737 38 1 1 2249 2285 452116907 452116944 1.190000e-04 58.4
2 TraesCS6D01G167400 chr6B 95.997 1574 33 13 1121 2666 275310548 275308977 0.000000e+00 2531.0
3 TraesCS6D01G167400 chr6B 89.212 825 71 4 1 816 275311607 275310792 0.000000e+00 1014.0
4 TraesCS6D01G167400 chr6B 85.215 859 110 10 1 847 699612180 699611327 0.000000e+00 867.0
5 TraesCS6D01G167400 chr6B 82.576 660 95 8 335 979 445888366 445887712 5.760000e-157 564.0
6 TraesCS6D01G167400 chr6B 84.191 272 32 7 842 1107 275310797 275310531 1.420000e-63 254.0
7 TraesCS6D01G167400 chr6A 98.205 1003 15 1 1121 2123 194811075 194810076 0.000000e+00 1749.0
8 TraesCS6D01G167400 chr6A 89.422 1125 88 14 1 1107 194812168 194811057 0.000000e+00 1389.0
9 TraesCS6D01G167400 chr6A 82.118 1001 148 15 2 978 405453497 405452504 0.000000e+00 828.0
10 TraesCS6D01G167400 chr6A 81.678 846 118 18 149 969 16799091 16799924 0.000000e+00 669.0
11 TraesCS6D01G167400 chr6A 97.324 299 7 1 2369 2666 194801487 194801189 9.840000e-140 507.0
12 TraesCS6D01G167400 chr6A 94.348 230 11 2 2123 2350 194804191 194803962 4.880000e-93 351.0
13 TraesCS6D01G167400 chr4D 83.384 981 143 13 2 969 11470161 11471134 0.000000e+00 891.0
14 TraesCS6D01G167400 chrUn 98.551 414 6 0 2662 3075 70285839 70286252 0.000000e+00 732.0
15 TraesCS6D01G167400 chr7A 98.551 414 6 0 2662 3075 109351957 109351544 0.000000e+00 732.0
16 TraesCS6D01G167400 chr3B 98.551 414 6 0 2662 3075 398842385 398842798 0.000000e+00 732.0
17 TraesCS6D01G167400 chr3B 84.841 409 55 7 388 790 711145483 711145890 3.690000e-109 405.0
18 TraesCS6D01G167400 chr3B 84.375 416 57 8 382 790 710829080 710829494 4.780000e-108 401.0
19 TraesCS6D01G167400 chr3A 98.551 414 6 0 2662 3075 91017009 91016596 0.000000e+00 732.0
20 TraesCS6D01G167400 chr2D 98.551 414 6 0 2662 3075 351053773 351053360 0.000000e+00 732.0
21 TraesCS6D01G167400 chr2D 98.551 414 6 0 2662 3075 392544989 392545402 0.000000e+00 732.0
22 TraesCS6D01G167400 chr2A 98.551 414 6 0 2662 3075 130809096 130808683 0.000000e+00 732.0
23 TraesCS6D01G167400 chr1A 98.551 414 6 0 2662 3075 396445692 396446105 0.000000e+00 732.0
24 TraesCS6D01G167400 chr1A 98.551 414 6 0 2662 3075 420384903 420385316 0.000000e+00 732.0
25 TraesCS6D01G167400 chr7D 83.677 582 64 14 1 573 152640400 152639841 1.260000e-143 520.0
26 TraesCS6D01G167400 chr7B 84.270 267 36 4 1 263 110192960 110192696 3.930000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G167400 chr6D 150154291 150157365 3074 False 5679.000000 5679 100.0000 1 3075 1 chr6D.!!$F1 3074
1 TraesCS6D01G167400 chr6B 275308977 275311607 2630 True 1266.333333 2531 89.8000 1 2666 3 chr6B.!!$R3 2665
2 TraesCS6D01G167400 chr6B 699611327 699612180 853 True 867.000000 867 85.2150 1 847 1 chr6B.!!$R2 846
3 TraesCS6D01G167400 chr6B 445887712 445888366 654 True 564.000000 564 82.5760 335 979 1 chr6B.!!$R1 644
4 TraesCS6D01G167400 chr6A 194810076 194812168 2092 True 1569.000000 1749 93.8135 1 2123 2 chr6A.!!$R3 2122
5 TraesCS6D01G167400 chr6A 405452504 405453497 993 True 828.000000 828 82.1180 2 978 1 chr6A.!!$R1 976
6 TraesCS6D01G167400 chr6A 16799091 16799924 833 False 669.000000 669 81.6780 149 969 1 chr6A.!!$F1 820
7 TraesCS6D01G167400 chr6A 194801189 194804191 3002 True 429.000000 507 95.8360 2123 2666 2 chr6A.!!$R2 543
8 TraesCS6D01G167400 chr4D 11470161 11471134 973 False 891.000000 891 83.3840 2 969 1 chr4D.!!$F1 967
9 TraesCS6D01G167400 chr7D 152639841 152640400 559 True 520.000000 520 83.6770 1 573 1 chr7D.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 914 0.535102 ACAGGAGAACAGCAAACCCG 60.535 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2859 5364 0.042881 AAGAGAGGGTGGGGTAGACC 59.957 60.0 0.0 0.0 39.11 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.382859 AGTGGAAACTTTGTTAACCATTCCTT 59.617 34.615 17.96 9.46 36.63 3.36
68 69 6.478673 GTGGAAACTTTGTTAACCATTCCTTG 59.521 38.462 17.96 1.26 36.63 3.61
105 106 2.380249 TCCAGTCTCTCCCGGATATCAT 59.620 50.000 0.73 0.00 0.00 2.45
147 149 3.284793 TTCCCAAAAACTCAACTCCGA 57.715 42.857 0.00 0.00 0.00 4.55
195 197 8.737168 ATCACTAAAAGCTTGAAGCATATACA 57.263 30.769 20.45 0.00 45.56 2.29
218 222 1.636003 GGTCAAGGATTCCCACCTTCT 59.364 52.381 0.00 0.00 44.65 2.85
233 237 3.057736 CACCTTCTTTCTCACTTGGCATG 60.058 47.826 0.00 0.00 0.00 4.06
235 239 4.015084 CCTTCTTTCTCACTTGGCATGAT 58.985 43.478 7.45 0.00 0.00 2.45
250 254 9.651913 ACTTGGCATGATAATTTCGTTAAAATT 57.348 25.926 7.45 1.83 46.72 1.82
286 290 2.080654 AGACCTGTAGCATCTCCCTC 57.919 55.000 0.00 0.00 0.00 4.30
314 318 6.569801 GCTCCCTAAAATAACACCAAGACAAC 60.570 42.308 0.00 0.00 0.00 3.32
350 364 4.489306 AGCTGTAGAACCCAGTTAATCC 57.511 45.455 0.00 0.00 32.41 3.01
383 397 4.603610 CCTATCCCCCTTCATAACCAGAAT 59.396 45.833 0.00 0.00 0.00 2.40
588 602 1.480137 CTCACTCGCCCTTGAAGATCT 59.520 52.381 0.00 0.00 0.00 2.75
625 639 1.738099 GTCGTTGAGAGCATGCCGT 60.738 57.895 15.66 0.44 0.00 5.68
641 655 2.550606 TGCCGTGACAATTCCAAGTAAC 59.449 45.455 0.00 0.00 0.00 2.50
711 728 1.410004 ACTCTCGACAACAGGAACCA 58.590 50.000 0.00 0.00 0.00 3.67
752 772 2.131183 GCTATTCTTGCTAGGCGACAG 58.869 52.381 0.00 0.00 0.00 3.51
758 778 1.371183 TGCTAGGCGACAGCAAGTT 59.629 52.632 12.18 0.00 45.71 2.66
772 792 5.810095 ACAGCAAGTTTATAGAGAAGCCTT 58.190 37.500 0.00 0.00 0.00 4.35
783 803 3.518634 GAGAAGCCTTCTCGTCAGATT 57.481 47.619 18.10 0.00 45.85 2.40
825 845 1.954146 GGCAGCGACTGTCGAAACA 60.954 57.895 32.07 0.00 43.74 2.83
859 897 4.307432 CAAAAGAGAAACTCTAGCCGACA 58.693 43.478 1.64 0.00 40.28 4.35
864 902 2.093106 GAAACTCTAGCCGACAGGAGA 58.907 52.381 0.00 0.00 41.02 3.71
876 914 0.535102 ACAGGAGAACAGCAAACCCG 60.535 55.000 0.00 0.00 0.00 5.28
899 942 5.061179 GTCTTTGCTAAGGGACAACAAGTA 58.939 41.667 8.06 0.00 32.02 2.24
942 985 7.044249 CGTAAGATCACCTACAACATAGTTTCG 60.044 40.741 0.00 0.00 43.02 3.46
994 1037 3.792736 GGCGGTCCTGGGTGCATA 61.793 66.667 0.00 0.00 0.00 3.14
1003 1046 4.504340 GGTCCTGGGTGCATACGTTTATAT 60.504 45.833 0.00 0.00 0.00 0.86
1029 1073 5.121221 TGAGTGTATGTATGAGCGTATGG 57.879 43.478 0.00 0.00 0.00 2.74
1031 1075 3.258372 AGTGTATGTATGAGCGTATGGGG 59.742 47.826 0.00 0.00 0.00 4.96
1038 1082 1.069258 GAGCGTATGGGGCTGTACC 59.931 63.158 0.00 0.00 41.72 3.34
1041 1085 1.518774 CGTATGGGGCTGTACCGTT 59.481 57.895 0.00 0.00 40.62 4.44
1042 1086 0.746063 CGTATGGGGCTGTACCGTTA 59.254 55.000 0.00 0.00 40.62 3.18
1044 1088 2.224113 CGTATGGGGCTGTACCGTTATT 60.224 50.000 0.00 0.00 40.62 1.40
1046 1090 2.985957 TGGGGCTGTACCGTTATTAC 57.014 50.000 0.00 0.00 40.62 1.89
1047 1091 1.485895 TGGGGCTGTACCGTTATTACC 59.514 52.381 0.00 0.00 40.62 2.85
1048 1092 1.202687 GGGGCTGTACCGTTATTACCC 60.203 57.143 0.00 0.00 40.62 3.69
1093 1137 7.373778 AGTGTTTCCGTTCATTATAAGTTCC 57.626 36.000 0.00 0.00 0.00 3.62
1094 1138 6.938030 AGTGTTTCCGTTCATTATAAGTTCCA 59.062 34.615 0.00 0.00 0.00 3.53
1095 1139 7.446013 AGTGTTTCCGTTCATTATAAGTTCCAA 59.554 33.333 0.00 0.00 0.00 3.53
1096 1140 7.536281 GTGTTTCCGTTCATTATAAGTTCCAAC 59.464 37.037 0.00 0.00 0.00 3.77
1097 1141 7.446013 TGTTTCCGTTCATTATAAGTTCCAACT 59.554 33.333 0.00 0.00 42.04 3.16
1099 1143 7.989416 TCCGTTCATTATAAGTTCCAACTTT 57.011 32.000 9.92 2.08 46.52 2.66
1100 1144 8.398878 TCCGTTCATTATAAGTTCCAACTTTT 57.601 30.769 9.92 5.36 46.52 2.27
1101 1145 9.504708 TCCGTTCATTATAAGTTCCAACTTTTA 57.495 29.630 9.92 4.44 46.52 1.52
1203 1248 1.059584 TGACAGTCCTGGCCTTTGGA 61.060 55.000 3.32 6.45 37.98 3.53
1982 2028 5.249393 AGAGCAGAAGGAGGAGTTATTTTGA 59.751 40.000 0.00 0.00 0.00 2.69
2216 2263 4.753107 GTGGCTTTGCTGTAGTTAGTTACA 59.247 41.667 0.00 0.00 32.86 2.41
2296 2344 2.715749 TCCAATGGGTATGCTGACTG 57.284 50.000 0.00 0.00 34.93 3.51
2350 2398 6.419484 TGTTGTCCAGAATTCAGACTCTAA 57.581 37.500 22.03 10.89 0.00 2.10
2351 2399 6.826668 TGTTGTCCAGAATTCAGACTCTAAA 58.173 36.000 22.03 10.63 0.00 1.85
2352 2400 6.706270 TGTTGTCCAGAATTCAGACTCTAAAC 59.294 38.462 22.03 18.41 0.00 2.01
2353 2401 6.419484 TGTCCAGAATTCAGACTCTAAACA 57.581 37.500 22.03 5.48 0.00 2.83
2357 2429 8.035394 GTCCAGAATTCAGACTCTAAACATGTA 58.965 37.037 17.07 0.00 0.00 2.29
2375 4880 8.571461 AACATGTATATTCCTGATATGCCTTG 57.429 34.615 0.00 0.00 33.75 3.61
2435 4940 2.543012 CTCCACATAGAGATGCTTTGCG 59.457 50.000 0.00 0.00 36.43 4.85
2666 5171 3.814625 TGTGCTGAATAACTCCACAACA 58.185 40.909 0.00 0.00 33.90 3.33
2667 5172 4.203226 TGTGCTGAATAACTCCACAACAA 58.797 39.130 0.00 0.00 33.90 2.83
2668 5173 4.036262 TGTGCTGAATAACTCCACAACAAC 59.964 41.667 0.00 0.00 33.90 3.32
2669 5174 4.036262 GTGCTGAATAACTCCACAACAACA 59.964 41.667 0.00 0.00 0.00 3.33
2670 5175 4.642437 TGCTGAATAACTCCACAACAACAA 59.358 37.500 0.00 0.00 0.00 2.83
2671 5176 4.976116 GCTGAATAACTCCACAACAACAAC 59.024 41.667 0.00 0.00 0.00 3.32
2672 5177 5.449862 GCTGAATAACTCCACAACAACAACA 60.450 40.000 0.00 0.00 0.00 3.33
2673 5178 6.516739 TGAATAACTCCACAACAACAACAA 57.483 33.333 0.00 0.00 0.00 2.83
2674 5179 6.326375 TGAATAACTCCACAACAACAACAAC 58.674 36.000 0.00 0.00 0.00 3.32
2675 5180 5.906113 ATAACTCCACAACAACAACAACA 57.094 34.783 0.00 0.00 0.00 3.33
2676 5181 4.592485 AACTCCACAACAACAACAACAA 57.408 36.364 0.00 0.00 0.00 2.83
2677 5182 3.908213 ACTCCACAACAACAACAACAAC 58.092 40.909 0.00 0.00 0.00 3.32
2678 5183 3.319405 ACTCCACAACAACAACAACAACA 59.681 39.130 0.00 0.00 0.00 3.33
2679 5184 4.202161 ACTCCACAACAACAACAACAACAA 60.202 37.500 0.00 0.00 0.00 2.83
2680 5185 4.693283 TCCACAACAACAACAACAACAAA 58.307 34.783 0.00 0.00 0.00 2.83
2681 5186 4.747108 TCCACAACAACAACAACAACAAAG 59.253 37.500 0.00 0.00 0.00 2.77
2682 5187 4.453339 CACAACAACAACAACAACAAAGC 58.547 39.130 0.00 0.00 0.00 3.51
2683 5188 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2684 5189 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2685 5190 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2686 5191 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2687 5192 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2688 5193 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2689 5194 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2690 5195 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2691 5196 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2692 5197 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2693 5198 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2694 5199 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2695 5200 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2696 5201 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2697 5202 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2698 5203 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2699 5204 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2700 5205 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2701 5206 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2702 5207 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2711 5216 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2712 5217 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2713 5218 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2714 5219 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2715 5220 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2716 5221 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2717 5222 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2718 5223 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2719 5224 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2720 5225 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2721 5226 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2722 5227 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2737 5242 3.531538 GTGAAACCCATTAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
2738 5243 3.938963 GTGAAACCCATTAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
2739 5244 3.938963 TGAAACCCATTAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
2740 5245 2.622064 ACCCATTAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
2741 5246 1.837439 ACCCATTAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
2742 5247 2.238646 ACCCATTAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
2743 5248 2.614057 CCCATTAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
2744 5249 3.535561 CCATTAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
2745 5250 3.557595 CCATTAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
2746 5251 2.561733 TAGATCTCGCAACCAACTCG 57.438 50.000 0.00 0.00 0.00 4.18
2747 5252 0.603569 AGATCTCGCAACCAACTCGT 59.396 50.000 0.00 0.00 0.00 4.18
2748 5253 0.716108 GATCTCGCAACCAACTCGTG 59.284 55.000 0.00 0.00 0.00 4.35
2756 5261 2.743928 CCAACTCGTGGCTCTGGC 60.744 66.667 0.00 0.00 41.72 4.85
2757 5262 2.031012 CAACTCGTGGCTCTGGCA 59.969 61.111 0.00 0.00 40.87 4.92
2764 5269 3.418687 TGGCTCTGGCACATGGAT 58.581 55.556 0.00 0.00 38.20 3.41
2765 5270 2.618984 TGGCTCTGGCACATGGATA 58.381 52.632 0.00 0.00 38.20 2.59
2766 5271 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2767 5272 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2768 5273 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2769 5274 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2770 5275 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
2771 5276 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
2772 5277 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
2773 5278 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
2774 5279 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
2775 5280 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
2776 5281 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
2779 5284 1.683943 TGGATAGCAAGCTTCCATGC 58.316 50.000 16.61 0.00 42.87 4.06
2780 5285 1.064537 TGGATAGCAAGCTTCCATGCA 60.065 47.619 16.61 6.28 44.95 3.96
2781 5286 1.336125 GGATAGCAAGCTTCCATGCAC 59.664 52.381 10.57 2.11 44.95 4.57
2782 5287 1.336125 GATAGCAAGCTTCCATGCACC 59.664 52.381 10.57 0.00 44.95 5.01
2783 5288 0.680921 TAGCAAGCTTCCATGCACCC 60.681 55.000 10.57 0.00 44.95 4.61
2784 5289 3.010413 GCAAGCTTCCATGCACCCC 62.010 63.158 0.00 0.00 42.12 4.95
2785 5290 1.304713 CAAGCTTCCATGCACCCCT 60.305 57.895 0.00 0.00 34.99 4.79
2786 5291 1.304713 AAGCTTCCATGCACCCCTG 60.305 57.895 0.00 0.00 34.99 4.45
2787 5292 2.036256 GCTTCCATGCACCCCTGT 59.964 61.111 0.00 0.00 0.00 4.00
2788 5293 2.048603 GCTTCCATGCACCCCTGTC 61.049 63.158 0.00 0.00 0.00 3.51
2789 5294 1.379044 CTTCCATGCACCCCTGTCC 60.379 63.158 0.00 0.00 0.00 4.02
2790 5295 2.141011 CTTCCATGCACCCCTGTCCA 62.141 60.000 0.00 0.00 0.00 4.02
2791 5296 1.508667 TTCCATGCACCCCTGTCCAT 61.509 55.000 0.00 0.00 0.00 3.41
2792 5297 0.623031 TCCATGCACCCCTGTCCATA 60.623 55.000 0.00 0.00 0.00 2.74
2793 5298 0.179009 CCATGCACCCCTGTCCATAG 60.179 60.000 0.00 0.00 0.00 2.23
2794 5299 0.820891 CATGCACCCCTGTCCATAGC 60.821 60.000 0.00 0.00 0.00 2.97
2795 5300 0.990282 ATGCACCCCTGTCCATAGCT 60.990 55.000 0.00 0.00 0.00 3.32
2796 5301 0.326143 TGCACCCCTGTCCATAGCTA 60.326 55.000 0.00 0.00 0.00 3.32
2797 5302 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
2798 5303 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
2799 5304 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
2800 5305 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
2801 5306 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
2802 5307 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
2803 5308 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
2804 5309 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
2805 5310 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
2806 5311 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
2807 5312 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
2808 5313 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
2809 5314 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
2810 5315 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
2811 5316 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
2812 5317 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
2813 5318 4.664150 AGCTAGCTCTTTGGTGATACTC 57.336 45.455 12.68 0.00 0.00 2.59
2814 5319 3.386402 AGCTAGCTCTTTGGTGATACTCC 59.614 47.826 12.68 0.00 0.00 3.85
2815 5320 3.133003 GCTAGCTCTTTGGTGATACTCCA 59.867 47.826 7.70 0.00 0.00 3.86
2816 5321 4.383118 GCTAGCTCTTTGGTGATACTCCAA 60.383 45.833 7.70 0.00 42.29 3.53
2817 5322 4.851639 AGCTCTTTGGTGATACTCCAAT 57.148 40.909 6.20 0.00 43.25 3.16
2818 5323 4.775236 AGCTCTTTGGTGATACTCCAATC 58.225 43.478 6.20 0.00 43.25 2.67
2819 5324 3.879892 GCTCTTTGGTGATACTCCAATCC 59.120 47.826 6.20 0.00 43.25 3.01
2820 5325 4.384647 GCTCTTTGGTGATACTCCAATCCT 60.385 45.833 6.20 0.00 43.25 3.24
2821 5326 5.749462 CTCTTTGGTGATACTCCAATCCTT 58.251 41.667 6.20 0.00 43.25 3.36
2822 5327 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
2823 5328 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
2824 5329 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
2825 5330 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
2826 5331 3.456277 GGTGATACTCCAATCCTTCAGGT 59.544 47.826 0.00 0.00 36.34 4.00
2827 5332 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
2828 5333 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
2829 5334 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
2830 5335 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
2831 5336 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
2832 5337 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
2833 5338 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
2834 5339 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
2835 5340 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
2836 5341 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
2837 5342 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
2838 5343 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
2839 5344 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
2840 5345 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
2841 5346 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
2842 5347 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
2843 5348 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
2844 5349 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
2845 5350 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
2846 5351 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
2847 5352 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
2848 5353 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
2849 5354 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
2850 5355 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
2851 5356 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
2852 5357 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
2853 5358 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
2854 5359 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
2855 5360 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
2856 5361 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
2857 5362 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
2858 5363 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
2859 5364 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
2860 5365 2.292267 CTCCTCCCATGTCAAATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
2861 5366 1.633432 TCCTCCCATGTCAAATTCGGT 59.367 47.619 0.00 0.00 0.00 4.69
2862 5367 2.017049 CCTCCCATGTCAAATTCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
2863 5368 2.356125 CCTCCCATGTCAAATTCGGTCT 60.356 50.000 0.00 0.00 0.00 3.85
2864 5369 3.118408 CCTCCCATGTCAAATTCGGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
2865 5370 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
2866 5371 2.943033 CCCATGTCAAATTCGGTCTACC 59.057 50.000 0.00 0.00 0.00 3.18
2867 5372 2.943033 CCATGTCAAATTCGGTCTACCC 59.057 50.000 0.00 0.00 0.00 3.69
2868 5373 2.773993 TGTCAAATTCGGTCTACCCC 57.226 50.000 0.00 0.00 0.00 4.95
2869 5374 1.979308 TGTCAAATTCGGTCTACCCCA 59.021 47.619 0.00 0.00 0.00 4.96
2870 5375 2.289819 TGTCAAATTCGGTCTACCCCAC 60.290 50.000 0.00 0.00 0.00 4.61
2871 5376 1.279846 TCAAATTCGGTCTACCCCACC 59.720 52.381 0.00 0.00 0.00 4.61
2872 5377 0.622136 AAATTCGGTCTACCCCACCC 59.378 55.000 0.00 0.00 0.00 4.61
2873 5378 0.253020 AATTCGGTCTACCCCACCCT 60.253 55.000 0.00 0.00 0.00 4.34
2874 5379 0.690077 ATTCGGTCTACCCCACCCTC 60.690 60.000 0.00 0.00 0.00 4.30
2875 5380 1.807771 TTCGGTCTACCCCACCCTCT 61.808 60.000 0.00 0.00 0.00 3.69
2876 5381 1.757340 CGGTCTACCCCACCCTCTC 60.757 68.421 0.00 0.00 0.00 3.20
2877 5382 1.704704 GGTCTACCCCACCCTCTCT 59.295 63.158 0.00 0.00 0.00 3.10
2878 5383 0.042881 GGTCTACCCCACCCTCTCTT 59.957 60.000 0.00 0.00 0.00 2.85
2879 5384 1.196012 GTCTACCCCACCCTCTCTTG 58.804 60.000 0.00 0.00 0.00 3.02
2880 5385 1.089978 TCTACCCCACCCTCTCTTGA 58.910 55.000 0.00 0.00 0.00 3.02
2881 5386 1.196012 CTACCCCACCCTCTCTTGAC 58.804 60.000 0.00 0.00 0.00 3.18
2882 5387 0.490017 TACCCCACCCTCTCTTGACA 59.510 55.000 0.00 0.00 0.00 3.58
2883 5388 0.178861 ACCCCACCCTCTCTTGACAT 60.179 55.000 0.00 0.00 0.00 3.06
2884 5389 0.995024 CCCCACCCTCTCTTGACATT 59.005 55.000 0.00 0.00 0.00 2.71
2885 5390 1.065126 CCCCACCCTCTCTTGACATTC 60.065 57.143 0.00 0.00 0.00 2.67
2886 5391 1.912043 CCCACCCTCTCTTGACATTCT 59.088 52.381 0.00 0.00 0.00 2.40
2887 5392 2.093235 CCCACCCTCTCTTGACATTCTC 60.093 54.545 0.00 0.00 0.00 2.87
2888 5393 2.093235 CCACCCTCTCTTGACATTCTCC 60.093 54.545 0.00 0.00 0.00 3.71
2889 5394 1.827969 ACCCTCTCTTGACATTCTCCG 59.172 52.381 0.00 0.00 0.00 4.63
2890 5395 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
2891 5396 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
2892 5397 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
2893 5398 0.994995 CTCTTGACATTCTCCGCACG 59.005 55.000 0.00 0.00 0.00 5.34
2894 5399 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
2895 5400 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
2896 5401 0.602638 TTGACATTCTCCGCACGCTT 60.603 50.000 0.00 0.00 0.00 4.68
2897 5402 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
2898 5403 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
2899 5404 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
2900 5405 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
2901 5406 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
2902 5407 3.554692 CTCCGCACGCTTTAGCCG 61.555 66.667 0.00 0.00 37.91 5.52
2903 5408 4.367023 TCCGCACGCTTTAGCCGT 62.367 61.111 0.00 0.00 37.91 5.68
2904 5409 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
2905 5410 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
2906 5411 3.849953 GCACGCTTTAGCCGTCCG 61.850 66.667 0.00 0.00 37.91 4.79
2907 5412 3.849953 CACGCTTTAGCCGTCCGC 61.850 66.667 0.00 0.00 37.91 5.54
2916 5421 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
2917 5422 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
2918 5423 2.494445 CGTCCGCTATGCACTGGA 59.506 61.111 0.00 0.00 0.00 3.86
2919 5424 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
2920 5425 1.884926 GTCCGCTATGCACTGGAGC 60.885 63.158 0.00 0.00 0.00 4.70
2921 5426 2.060383 TCCGCTATGCACTGGAGCT 61.060 57.895 9.31 0.00 33.91 4.09
2922 5427 1.153289 CCGCTATGCACTGGAGCTT 60.153 57.895 9.31 0.00 33.91 3.74
2923 5428 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
2924 5429 0.179089 CGCTATGCACTGGAGCTTCT 60.179 55.000 9.31 0.00 33.91 2.85
2925 5430 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
2926 5431 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
2927 5432 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
2928 5433 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
2929 5434 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
2930 5435 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
2931 5436 2.297129 ACTGGAGCTTCTGGAGGCC 61.297 63.158 3.68 0.00 33.44 5.19
2932 5437 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
2933 5438 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
2934 5439 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
2935 5440 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
2937 5442 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
2938 5443 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
2940 5445 4.399395 CTGGAGGCCTGCGCTGAA 62.399 66.667 20.39 0.00 34.44 3.02
2941 5446 3.694058 CTGGAGGCCTGCGCTGAAT 62.694 63.158 20.39 0.55 34.44 2.57
2942 5447 2.315781 CTGGAGGCCTGCGCTGAATA 62.316 60.000 20.39 0.00 34.44 1.75
2943 5448 1.072159 GGAGGCCTGCGCTGAATAT 59.928 57.895 12.00 0.00 34.44 1.28
2944 5449 1.233285 GGAGGCCTGCGCTGAATATG 61.233 60.000 12.00 0.00 34.44 1.78
2945 5450 1.849976 GAGGCCTGCGCTGAATATGC 61.850 60.000 12.00 9.73 34.44 3.14
2946 5451 2.641559 GCCTGCGCTGAATATGCC 59.358 61.111 16.65 0.00 0.00 4.40
2947 5452 2.912624 GCCTGCGCTGAATATGCCC 61.913 63.158 16.65 0.00 0.00 5.36
2948 5453 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
2949 5454 1.102809 CCTGCGCTGAATATGCCCAA 61.103 55.000 16.65 0.00 0.00 4.12
2950 5455 0.740149 CTGCGCTGAATATGCCCAAA 59.260 50.000 9.73 0.00 0.00 3.28
2951 5456 0.455410 TGCGCTGAATATGCCCAAAC 59.545 50.000 9.73 0.00 0.00 2.93
2952 5457 0.249031 GCGCTGAATATGCCCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
2953 5458 1.102154 CGCTGAATATGCCCAAACCA 58.898 50.000 0.00 0.00 0.00 3.67
2954 5459 1.682854 CGCTGAATATGCCCAAACCAT 59.317 47.619 0.00 0.00 0.00 3.55
2955 5460 2.287788 CGCTGAATATGCCCAAACCATC 60.288 50.000 0.00 0.00 0.00 3.51
2956 5461 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
2957 5462 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
2958 5463 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
2959 5464 4.209538 TGAATATGCCCAAACCATCTCAG 58.790 43.478 0.00 0.00 0.00 3.35
2960 5465 4.079844 TGAATATGCCCAAACCATCTCAGA 60.080 41.667 0.00 0.00 0.00 3.27
2961 5466 2.134789 ATGCCCAAACCATCTCAGAC 57.865 50.000 0.00 0.00 0.00 3.51
2962 5467 0.321564 TGCCCAAACCATCTCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
2963 5468 0.036388 GCCCAAACCATCTCAGACGA 60.036 55.000 0.00 0.00 0.00 4.20
2964 5469 1.407437 GCCCAAACCATCTCAGACGAT 60.407 52.381 0.00 0.00 0.00 3.73
2965 5470 2.283298 CCCAAACCATCTCAGACGATG 58.717 52.381 0.00 0.00 40.32 3.84
2966 5471 2.355108 CCCAAACCATCTCAGACGATGT 60.355 50.000 0.00 0.00 39.26 3.06
2967 5472 3.338249 CCAAACCATCTCAGACGATGTT 58.662 45.455 0.00 0.00 39.26 2.71
2968 5473 3.125829 CCAAACCATCTCAGACGATGTTG 59.874 47.826 0.00 7.25 39.26 3.33
2969 5474 2.680312 ACCATCTCAGACGATGTTGG 57.320 50.000 0.00 0.39 39.26 3.77
2970 5475 2.179427 ACCATCTCAGACGATGTTGGA 58.821 47.619 0.00 0.00 39.26 3.53
2971 5476 2.093973 ACCATCTCAGACGATGTTGGAC 60.094 50.000 0.00 0.00 39.26 4.02
2972 5477 2.094026 CCATCTCAGACGATGTTGGACA 60.094 50.000 0.00 0.00 39.26 4.02
2973 5478 3.588955 CATCTCAGACGATGTTGGACAA 58.411 45.455 0.00 0.00 36.80 3.18
2974 5479 3.303881 TCTCAGACGATGTTGGACAAG 57.696 47.619 0.00 0.00 0.00 3.16
2975 5480 1.728971 CTCAGACGATGTTGGACAAGC 59.271 52.381 0.00 0.00 0.00 4.01
2976 5481 1.344438 TCAGACGATGTTGGACAAGCT 59.656 47.619 0.00 0.00 0.00 3.74
2977 5482 2.146342 CAGACGATGTTGGACAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
2978 5483 2.158449 CAGACGATGTTGGACAAGCTTC 59.842 50.000 0.00 0.00 0.00 3.86
2979 5484 2.037772 AGACGATGTTGGACAAGCTTCT 59.962 45.455 0.00 0.00 0.00 2.85
2980 5485 2.413453 GACGATGTTGGACAAGCTTCTC 59.587 50.000 0.00 0.00 0.00 2.87
2981 5486 2.037772 ACGATGTTGGACAAGCTTCTCT 59.962 45.455 0.00 0.00 0.00 3.10
2982 5487 3.070018 CGATGTTGGACAAGCTTCTCTT 58.930 45.455 0.00 0.00 34.78 2.85
2983 5488 3.124297 CGATGTTGGACAAGCTTCTCTTC 59.876 47.826 0.00 0.00 31.27 2.87
2984 5489 3.558931 TGTTGGACAAGCTTCTCTTCA 57.441 42.857 0.00 0.00 31.27 3.02
2985 5490 3.884895 TGTTGGACAAGCTTCTCTTCAA 58.115 40.909 0.00 0.00 31.27 2.69
2986 5491 4.464008 TGTTGGACAAGCTTCTCTTCAAT 58.536 39.130 0.00 0.00 31.27 2.57
2987 5492 4.889409 TGTTGGACAAGCTTCTCTTCAATT 59.111 37.500 0.00 0.00 31.27 2.32
2988 5493 5.218139 GTTGGACAAGCTTCTCTTCAATTG 58.782 41.667 0.00 0.00 31.27 2.32
2989 5494 3.822735 TGGACAAGCTTCTCTTCAATTGG 59.177 43.478 5.42 0.00 31.27 3.16
2990 5495 3.823304 GGACAAGCTTCTCTTCAATTGGT 59.177 43.478 5.42 0.00 31.27 3.67
2991 5496 4.320788 GGACAAGCTTCTCTTCAATTGGTG 60.321 45.833 5.42 0.00 31.27 4.17
2992 5497 3.005155 ACAAGCTTCTCTTCAATTGGTGC 59.995 43.478 5.42 0.62 31.27 5.01
2993 5498 3.151912 AGCTTCTCTTCAATTGGTGCT 57.848 42.857 5.42 2.81 0.00 4.40
2994 5499 4.292186 AGCTTCTCTTCAATTGGTGCTA 57.708 40.909 5.42 0.00 0.00 3.49
2995 5500 4.006319 AGCTTCTCTTCAATTGGTGCTAC 58.994 43.478 5.42 0.00 0.00 3.58
2996 5501 4.006319 GCTTCTCTTCAATTGGTGCTACT 58.994 43.478 5.42 0.00 0.00 2.57
2997 5502 4.094146 GCTTCTCTTCAATTGGTGCTACTC 59.906 45.833 5.42 0.00 0.00 2.59
2998 5503 4.207891 TCTCTTCAATTGGTGCTACTCC 57.792 45.455 5.42 0.00 0.00 3.85
2999 5504 3.582647 TCTCTTCAATTGGTGCTACTCCA 59.417 43.478 5.42 0.00 0.00 3.86
3000 5505 4.041567 TCTCTTCAATTGGTGCTACTCCAA 59.958 41.667 5.42 3.81 46.82 3.53
3001 5506 4.072131 TCTTCAATTGGTGCTACTCCAAC 58.928 43.478 5.42 0.00 45.84 3.77
3002 5507 3.788227 TCAATTGGTGCTACTCCAACT 57.212 42.857 5.42 0.00 45.84 3.16
3003 5508 3.674997 TCAATTGGTGCTACTCCAACTC 58.325 45.455 5.42 0.00 45.84 3.01
3004 5509 3.327757 TCAATTGGTGCTACTCCAACTCT 59.672 43.478 5.42 0.00 45.84 3.24
3005 5510 4.530553 TCAATTGGTGCTACTCCAACTCTA 59.469 41.667 5.42 0.00 45.84 2.43
3006 5511 5.189736 TCAATTGGTGCTACTCCAACTCTAT 59.810 40.000 5.42 0.00 45.84 1.98
3007 5512 4.737855 TTGGTGCTACTCCAACTCTATC 57.262 45.455 0.00 0.00 39.62 2.08
3008 5513 3.982516 TGGTGCTACTCCAACTCTATCT 58.017 45.455 0.00 0.00 31.50 1.98
3009 5514 3.954904 TGGTGCTACTCCAACTCTATCTC 59.045 47.826 0.00 0.00 31.50 2.75
3010 5515 3.003897 GGTGCTACTCCAACTCTATCTCG 59.996 52.174 0.00 0.00 0.00 4.04
3011 5516 3.628487 GTGCTACTCCAACTCTATCTCGT 59.372 47.826 0.00 0.00 0.00 4.18
3012 5517 4.815308 GTGCTACTCCAACTCTATCTCGTA 59.185 45.833 0.00 0.00 0.00 3.43
3013 5518 5.470777 GTGCTACTCCAACTCTATCTCGTAT 59.529 44.000 0.00 0.00 0.00 3.06
3014 5519 6.649973 GTGCTACTCCAACTCTATCTCGTATA 59.350 42.308 0.00 0.00 0.00 1.47
3015 5520 7.334921 GTGCTACTCCAACTCTATCTCGTATAT 59.665 40.741 0.00 0.00 0.00 0.86
3016 5521 7.549842 TGCTACTCCAACTCTATCTCGTATATC 59.450 40.741 0.00 0.00 0.00 1.63
3017 5522 7.549842 GCTACTCCAACTCTATCTCGTATATCA 59.450 40.741 0.00 0.00 0.00 2.15
3018 5523 9.607988 CTACTCCAACTCTATCTCGTATATCAT 57.392 37.037 0.00 0.00 0.00 2.45
3019 5524 8.500753 ACTCCAACTCTATCTCGTATATCATC 57.499 38.462 0.00 0.00 0.00 2.92
3020 5525 8.103935 ACTCCAACTCTATCTCGTATATCATCA 58.896 37.037 0.00 0.00 0.00 3.07
3021 5526 9.119418 CTCCAACTCTATCTCGTATATCATCAT 57.881 37.037 0.00 0.00 0.00 2.45
3022 5527 9.467796 TCCAACTCTATCTCGTATATCATCATT 57.532 33.333 0.00 0.00 0.00 2.57
3023 5528 9.729023 CCAACTCTATCTCGTATATCATCATTC 57.271 37.037 0.00 0.00 0.00 2.67
3024 5529 9.729023 CAACTCTATCTCGTATATCATCATTCC 57.271 37.037 0.00 0.00 0.00 3.01
3025 5530 8.148807 ACTCTATCTCGTATATCATCATTCCG 57.851 38.462 0.00 0.00 0.00 4.30
3026 5531 7.227711 ACTCTATCTCGTATATCATCATTCCGG 59.772 40.741 0.00 0.00 0.00 5.14
3027 5532 7.280356 TCTATCTCGTATATCATCATTCCGGA 58.720 38.462 0.00 0.00 0.00 5.14
3028 5533 5.562506 TCTCGTATATCATCATTCCGGAC 57.437 43.478 1.83 0.00 0.00 4.79
3029 5534 5.254115 TCTCGTATATCATCATTCCGGACT 58.746 41.667 1.83 0.00 0.00 3.85
3030 5535 5.354513 TCTCGTATATCATCATTCCGGACTC 59.645 44.000 1.83 0.00 0.00 3.36
3031 5536 4.094442 TCGTATATCATCATTCCGGACTCG 59.906 45.833 1.83 0.00 0.00 4.18
3032 5537 4.094442 CGTATATCATCATTCCGGACTCGA 59.906 45.833 1.83 0.34 39.00 4.04
3033 5538 5.220873 CGTATATCATCATTCCGGACTCGAT 60.221 44.000 1.83 3.28 39.00 3.59
3034 5539 3.584406 ATCATCATTCCGGACTCGATC 57.416 47.619 1.83 0.00 39.00 3.69
3035 5540 1.613925 TCATCATTCCGGACTCGATCC 59.386 52.381 1.83 4.37 45.20 3.36
3036 5541 1.615883 CATCATTCCGGACTCGATCCT 59.384 52.381 1.83 0.00 46.69 3.24
3037 5542 1.776662 TCATTCCGGACTCGATCCTT 58.223 50.000 1.83 0.00 46.69 3.36
3038 5543 1.681793 TCATTCCGGACTCGATCCTTC 59.318 52.381 1.83 0.00 46.69 3.46
3039 5544 1.041437 ATTCCGGACTCGATCCTTCC 58.959 55.000 1.83 3.28 46.69 3.46
3040 5545 0.033405 TTCCGGACTCGATCCTTCCT 60.033 55.000 1.83 0.00 46.69 3.36
3041 5546 0.465824 TCCGGACTCGATCCTTCCTC 60.466 60.000 0.00 0.00 46.69 3.71
3042 5547 1.649815 CGGACTCGATCCTTCCTCG 59.350 63.158 10.77 0.00 46.69 4.63
3043 5548 1.096386 CGGACTCGATCCTTCCTCGT 61.096 60.000 10.77 0.00 46.69 4.18
3044 5549 0.382515 GGACTCGATCCTTCCTCGTG 59.617 60.000 6.63 0.00 45.22 4.35
3045 5550 1.096416 GACTCGATCCTTCCTCGTGT 58.904 55.000 0.70 0.70 43.19 4.49
3046 5551 0.811915 ACTCGATCCTTCCTCGTGTG 59.188 55.000 0.34 0.00 40.21 3.82
3047 5552 0.101399 CTCGATCCTTCCTCGTGTGG 59.899 60.000 0.00 0.00 37.40 4.17
3048 5553 1.519455 CGATCCTTCCTCGTGTGGC 60.519 63.158 0.00 0.00 0.00 5.01
3049 5554 1.153349 GATCCTTCCTCGTGTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
3050 5555 1.899437 GATCCTTCCTCGTGTGGCCA 61.899 60.000 0.00 0.00 0.00 5.36
3051 5556 2.185310 ATCCTTCCTCGTGTGGCCAC 62.185 60.000 29.67 29.67 38.27 5.01
3052 5557 2.425592 CTTCCTCGTGTGGCCACA 59.574 61.111 34.74 34.74 41.93 4.17
3062 5567 2.785868 GTGGCCACACATCCATCTC 58.214 57.895 31.23 0.00 46.90 2.75
3063 5568 0.035152 GTGGCCACACATCCATCTCA 60.035 55.000 31.23 0.00 46.90 3.27
3064 5569 0.697658 TGGCCACACATCCATCTCAA 59.302 50.000 0.00 0.00 0.00 3.02
3065 5570 1.098050 GGCCACACATCCATCTCAAC 58.902 55.000 0.00 0.00 0.00 3.18
3066 5571 1.614051 GGCCACACATCCATCTCAACA 60.614 52.381 0.00 0.00 0.00 3.33
3067 5572 2.372264 GCCACACATCCATCTCAACAT 58.628 47.619 0.00 0.00 0.00 2.71
3068 5573 3.544684 GCCACACATCCATCTCAACATA 58.455 45.455 0.00 0.00 0.00 2.29
3069 5574 3.313526 GCCACACATCCATCTCAACATAC 59.686 47.826 0.00 0.00 0.00 2.39
3070 5575 3.557185 CCACACATCCATCTCAACATACG 59.443 47.826 0.00 0.00 0.00 3.06
3071 5576 3.001634 CACACATCCATCTCAACATACGC 59.998 47.826 0.00 0.00 0.00 4.42
3072 5577 3.197265 CACATCCATCTCAACATACGCA 58.803 45.455 0.00 0.00 0.00 5.24
3073 5578 3.811497 CACATCCATCTCAACATACGCAT 59.189 43.478 0.00 0.00 0.00 4.73
3074 5579 4.060900 ACATCCATCTCAACATACGCATC 58.939 43.478 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.379865 GATCGGGCGGTAGGCAACA 62.380 63.158 0.00 0.00 46.16 3.33
68 69 2.588034 GATCGGGCGGTAGGCAAC 60.588 66.667 0.00 0.00 46.16 4.17
105 106 6.148811 GGAAATCAGTTTAAATGGAGACGTGA 59.851 38.462 0.00 0.00 0.00 4.35
147 149 3.245229 TGTCTATTTGAATGTGGCCTGGT 60.245 43.478 3.32 0.00 0.00 4.00
218 222 6.150976 ACGAAATTATCATGCCAAGTGAGAAA 59.849 34.615 0.00 0.00 31.46 2.52
250 254 5.665812 ACAGGTCTATGGCTAGTAATTGGAA 59.334 40.000 0.00 0.00 0.00 3.53
286 290 5.710099 TCTTGGTGTTATTTTAGGGAGCTTG 59.290 40.000 0.00 0.00 0.00 4.01
314 318 2.358737 GCTTGGGACCGGTGTCAG 60.359 66.667 14.63 3.21 43.65 3.51
350 364 1.770324 GGGGATAGGCCAGATTGGG 59.230 63.158 5.01 0.00 38.19 4.12
450 464 2.982130 GATGGTCGCTCTGGTGGT 59.018 61.111 0.00 0.00 0.00 4.16
588 602 0.109458 CGGCAGTACGTGAGCTGTTA 60.109 55.000 14.80 0.00 35.33 2.41
625 639 5.818336 TGAAAGTCGTTACTTGGAATTGTCA 59.182 36.000 0.00 0.00 45.37 3.58
661 675 2.096218 GTCGTTCCTTGTTGCACTGATC 60.096 50.000 0.00 0.00 0.00 2.92
711 728 1.222567 AGGGTTTGTTGTCCTCTGGT 58.777 50.000 0.00 0.00 0.00 4.00
772 792 4.202060 GCTGGTCTTGATAATCTGACGAGA 60.202 45.833 14.07 0.00 37.42 4.04
783 803 6.109156 TGTTAGAGTTTGCTGGTCTTGATA 57.891 37.500 0.00 0.00 0.00 2.15
825 845 1.152922 TCTTTTGGCGTTCCCCGTT 60.153 52.632 0.00 0.00 39.32 4.44
859 897 0.250338 GACGGGTTTGCTGTTCTCCT 60.250 55.000 0.00 0.00 0.00 3.69
876 914 3.883489 ACTTGTTGTCCCTTAGCAAAGAC 59.117 43.478 0.00 0.00 34.37 3.01
886 929 4.232091 TCCTCTCTTTACTTGTTGTCCCT 58.768 43.478 0.00 0.00 0.00 4.20
926 969 7.884816 TTTCTTCTCGAAACTATGTTGTAGG 57.115 36.000 0.00 0.00 36.72 3.18
942 985 2.744741 GTTGGCCTGCTAGTTTCTTCTC 59.255 50.000 3.32 0.00 0.00 2.87
987 1030 8.770828 ACACTCATTTATATAAACGTATGCACC 58.229 33.333 10.07 0.00 0.00 5.01
1003 1046 7.812669 CCATACGCTCATACATACACTCATTTA 59.187 37.037 0.00 0.00 0.00 1.40
1029 1073 1.202687 GGGGTAATAACGGTACAGCCC 60.203 57.143 13.77 13.77 0.00 5.19
1031 1075 2.985957 TGGGGTAATAACGGTACAGC 57.014 50.000 0.00 0.00 0.00 4.40
1038 1082 3.946606 ACCTGAGTTTGGGGTAATAACG 58.053 45.455 0.00 0.00 0.00 3.18
1041 1085 7.519347 AATCTTACCTGAGTTTGGGGTAATA 57.481 36.000 0.00 0.00 42.39 0.98
1042 1086 6.402981 AATCTTACCTGAGTTTGGGGTAAT 57.597 37.500 0.00 0.00 42.39 1.89
1044 1088 5.853572 AAATCTTACCTGAGTTTGGGGTA 57.146 39.130 0.00 0.00 34.86 3.69
1046 1090 6.719829 ACTAAAAATCTTACCTGAGTTTGGGG 59.280 38.462 0.00 0.00 34.98 4.96
1047 1091 7.230712 ACACTAAAAATCTTACCTGAGTTTGGG 59.769 37.037 0.00 0.00 34.98 4.12
1048 1092 8.166422 ACACTAAAAATCTTACCTGAGTTTGG 57.834 34.615 0.00 0.00 34.98 3.28
1108 1152 6.844097 AAAGTTGGAACTGGTGTCTAAAAA 57.156 33.333 0.00 0.00 39.66 1.94
1109 1153 6.844097 AAAAGTTGGAACTGGTGTCTAAAA 57.156 33.333 0.00 0.00 39.66 1.52
1110 1154 7.612633 ACTTAAAAGTTGGAACTGGTGTCTAAA 59.387 33.333 0.00 0.00 39.66 1.85
1111 1155 7.114095 ACTTAAAAGTTGGAACTGGTGTCTAA 58.886 34.615 0.00 0.00 39.66 2.10
1112 1156 6.655930 ACTTAAAAGTTGGAACTGGTGTCTA 58.344 36.000 0.00 0.00 39.66 2.59
1113 1157 5.506708 ACTTAAAAGTTGGAACTGGTGTCT 58.493 37.500 0.00 0.00 39.66 3.41
1114 1158 5.830000 ACTTAAAAGTTGGAACTGGTGTC 57.170 39.130 0.00 0.00 39.66 3.67
1674 1719 2.043852 ACGGCCTCGGTGAGATCT 60.044 61.111 0.00 0.00 41.39 2.75
2057 2103 6.238049 GCATTTAGTACTCAGCATCAGACTTG 60.238 42.308 0.00 0.00 0.00 3.16
2140 2187 1.278127 GGTCTTCAAGGGGATCGTTCA 59.722 52.381 0.00 0.00 0.00 3.18
2216 2263 6.449698 CCAAAGTAAGCAACACATCTTCAAT 58.550 36.000 0.00 0.00 0.00 2.57
2296 2344 3.642377 GGAAGGAGGGAGATGGTACTAAC 59.358 52.174 0.00 0.00 0.00 2.34
2340 2388 9.421399 TCAGGAATATACATGTTTAGAGTCTGA 57.579 33.333 2.30 9.75 0.00 3.27
2350 2398 7.613022 CCAAGGCATATCAGGAATATACATGTT 59.387 37.037 2.30 0.00 0.00 2.71
2351 2399 7.114754 CCAAGGCATATCAGGAATATACATGT 58.885 38.462 2.69 2.69 0.00 3.21
2352 2400 7.114754 ACCAAGGCATATCAGGAATATACATG 58.885 38.462 0.00 0.00 0.00 3.21
2353 2401 7.276088 ACCAAGGCATATCAGGAATATACAT 57.724 36.000 0.00 0.00 0.00 2.29
2357 2429 6.183361 ACAGAACCAAGGCATATCAGGAATAT 60.183 38.462 0.00 0.00 0.00 1.28
2359 2431 4.079558 ACAGAACCAAGGCATATCAGGAAT 60.080 41.667 0.00 0.00 0.00 3.01
2375 4880 8.244113 CCAAAAATAACTATCAGGAACAGAACC 58.756 37.037 0.00 0.00 0.00 3.62
2435 4940 3.791353 GCTGTACAAACTTGTTGCTTGTC 59.209 43.478 0.00 0.00 42.35 3.18
2666 5171 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2667 5172 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2668 5173 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2669 5174 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2670 5175 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2671 5176 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2672 5177 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2673 5178 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2674 5179 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2675 5180 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2676 5181 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2677 5182 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2678 5183 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2679 5184 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2680 5185 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2681 5186 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2692 5197 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2693 5198 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2694 5199 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2695 5200 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2696 5201 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2697 5202 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2698 5203 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2699 5204 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2700 5205 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2701 5206 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2702 5207 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2703 5208 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2704 5209 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2705 5210 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2706 5211 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2707 5212 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2708 5213 2.808906 AATGGGTTTCACCTCTAGCC 57.191 50.000 0.00 0.00 38.64 3.93
2709 5214 4.755266 TCTAATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
2710 5215 6.515862 CGAGATCTAATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
2711 5216 5.302059 CGAGATCTAATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
2712 5217 4.100189 CGAGATCTAATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
2713 5218 4.372656 CGAGATCTAATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
2714 5219 3.432326 GCGAGATCTAATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
2715 5220 2.872858 GCGAGATCTAATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
2716 5221 3.531538 TGCGAGATCTAATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
2717 5222 3.904800 TGCGAGATCTAATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
2718 5223 3.312697 GGTTGCGAGATCTAATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
2719 5224 3.279434 GGTTGCGAGATCTAATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
2720 5225 2.238646 TGGTTGCGAGATCTAATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
2721 5226 1.837439 TGGTTGCGAGATCTAATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
2722 5227 2.614057 GTTGGTTGCGAGATCTAATGGG 59.386 50.000 0.00 0.00 0.00 4.00
2723 5228 3.535561 AGTTGGTTGCGAGATCTAATGG 58.464 45.455 0.00 0.00 0.00 3.16
2724 5229 3.243877 CGAGTTGGTTGCGAGATCTAATG 59.756 47.826 0.00 0.00 0.00 1.90
2725 5230 3.119101 ACGAGTTGGTTGCGAGATCTAAT 60.119 43.478 0.00 0.00 0.00 1.73
2726 5231 2.230508 ACGAGTTGGTTGCGAGATCTAA 59.769 45.455 0.00 0.00 0.00 2.10
2727 5232 1.816835 ACGAGTTGGTTGCGAGATCTA 59.183 47.619 0.00 0.00 0.00 1.98
2728 5233 0.603569 ACGAGTTGGTTGCGAGATCT 59.396 50.000 0.00 0.00 0.00 2.75
2729 5234 0.716108 CACGAGTTGGTTGCGAGATC 59.284 55.000 0.00 0.00 0.00 2.75
2730 5235 0.670546 CCACGAGTTGGTTGCGAGAT 60.671 55.000 0.00 0.00 41.10 2.75
2731 5236 1.300620 CCACGAGTTGGTTGCGAGA 60.301 57.895 0.00 0.00 41.10 4.04
2732 5237 3.244105 CCACGAGTTGGTTGCGAG 58.756 61.111 0.00 0.00 41.10 5.03
2740 5245 2.031012 TGCCAGAGCCACGAGTTG 59.969 61.111 0.00 0.00 38.69 3.16
2741 5246 2.031163 GTGCCAGAGCCACGAGTT 59.969 61.111 0.00 0.00 38.69 3.01
2742 5247 2.587247 ATGTGCCAGAGCCACGAGT 61.587 57.895 0.00 0.00 38.69 4.18
2743 5248 2.104859 CATGTGCCAGAGCCACGAG 61.105 63.158 0.00 0.00 38.69 4.18
2744 5249 2.046988 CATGTGCCAGAGCCACGA 60.047 61.111 0.00 0.00 38.69 4.35
2745 5250 2.881539 ATCCATGTGCCAGAGCCACG 62.882 60.000 0.00 0.00 38.69 4.94
2746 5251 0.181114 TATCCATGTGCCAGAGCCAC 59.819 55.000 0.00 0.00 38.69 5.01
2747 5252 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2748 5253 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2749 5254 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2750 5255 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
2751 5256 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
2752 5257 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
2753 5258 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
2754 5259 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
2755 5260 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
2756 5261 2.646930 TGGAAGCTTGCTATCCATGTG 58.353 47.619 19.34 0.00 38.30 3.21
2760 5265 1.064537 TGCATGGAAGCTTGCTATCCA 60.065 47.619 19.34 20.23 46.60 3.41
2761 5266 1.336125 GTGCATGGAAGCTTGCTATCC 59.664 52.381 19.34 6.99 39.60 2.59
2762 5267 1.336125 GGTGCATGGAAGCTTGCTATC 59.664 52.381 19.34 8.04 39.60 2.08
2763 5268 1.396653 GGTGCATGGAAGCTTGCTAT 58.603 50.000 19.34 8.14 39.60 2.97
2764 5269 0.680921 GGGTGCATGGAAGCTTGCTA 60.681 55.000 19.34 6.07 39.60 3.49
2765 5270 1.980772 GGGTGCATGGAAGCTTGCT 60.981 57.895 19.34 1.86 39.60 3.91
2766 5271 2.575461 GGGTGCATGGAAGCTTGC 59.425 61.111 11.58 11.58 39.33 4.01
2767 5272 1.304713 AGGGGTGCATGGAAGCTTG 60.305 57.895 2.10 0.00 34.99 4.01
2768 5273 1.304713 CAGGGGTGCATGGAAGCTT 60.305 57.895 0.00 0.00 34.99 3.74
2769 5274 2.357836 CAGGGGTGCATGGAAGCT 59.642 61.111 0.00 0.00 34.99 3.74
2770 5275 2.036256 ACAGGGGTGCATGGAAGC 59.964 61.111 0.00 0.00 0.00 3.86
2771 5276 1.379044 GGACAGGGGTGCATGGAAG 60.379 63.158 0.00 0.00 35.12 3.46
2772 5277 2.159490 TGGACAGGGGTGCATGGAA 61.159 57.895 0.00 0.00 40.73 3.53
2773 5278 2.531428 TGGACAGGGGTGCATGGA 60.531 61.111 0.00 0.00 40.73 3.41
2778 5283 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
2779 5284 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
2780 5285 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
2781 5286 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
2782 5287 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
2783 5288 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
2784 5289 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
2785 5290 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
2786 5291 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
2787 5292 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
2788 5293 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
2789 5294 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
2790 5295 5.245075 GGAGTATCACCAAAGAGCTAGCTAT 59.755 44.000 19.38 12.73 36.25 2.97
2791 5296 4.585162 GGAGTATCACCAAAGAGCTAGCTA 59.415 45.833 19.38 0.00 36.25 3.32
2792 5297 3.386402 GGAGTATCACCAAAGAGCTAGCT 59.614 47.826 19.45 19.45 36.25 3.32
2793 5298 3.133003 TGGAGTATCACCAAAGAGCTAGC 59.867 47.826 6.62 6.62 36.25 3.42
2794 5299 5.344743 TTGGAGTATCACCAAAGAGCTAG 57.655 43.478 0.00 0.00 43.22 3.42
2800 5305 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
2801 5306 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
2802 5307 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
2803 5308 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
2804 5309 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
2805 5310 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
2806 5311 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
2807 5312 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
2808 5313 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
2809 5314 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
2810 5315 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
2811 5316 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
2812 5317 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
2813 5318 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
2814 5319 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
2815 5320 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
2816 5321 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
2817 5322 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
2818 5323 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
2819 5324 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
2820 5325 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
2821 5326 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
2822 5327 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
2823 5328 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
2824 5329 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
2825 5330 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
2826 5331 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
2827 5332 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
2828 5333 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
2829 5334 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
2830 5335 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
2831 5336 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
2832 5337 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
2833 5338 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
2834 5339 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
2835 5340 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
2836 5341 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
2837 5342 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
2838 5343 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
2839 5344 2.356125 CCGAATTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
2840 5345 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
2841 5346 1.633432 ACCGAATTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
2842 5347 2.017049 GACCGAATTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
2843 5348 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
2844 5349 3.370103 GGTAGACCGAATTTGACATGGGA 60.370 47.826 0.00 0.00 0.00 4.37
2845 5350 2.943033 GGTAGACCGAATTTGACATGGG 59.057 50.000 0.00 0.00 0.00 4.00
2846 5351 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
2847 5352 2.943033 GGGGTAGACCGAATTTGACATG 59.057 50.000 0.00 0.00 41.60 3.21
2848 5353 2.574369 TGGGGTAGACCGAATTTGACAT 59.426 45.455 0.00 0.00 41.60 3.06
2849 5354 1.979308 TGGGGTAGACCGAATTTGACA 59.021 47.619 0.00 0.00 41.60 3.58
2850 5355 2.353323 GTGGGGTAGACCGAATTTGAC 58.647 52.381 0.00 0.00 41.60 3.18
2851 5356 1.279846 GGTGGGGTAGACCGAATTTGA 59.720 52.381 0.00 0.00 41.60 2.69
2852 5357 1.680860 GGGTGGGGTAGACCGAATTTG 60.681 57.143 0.00 0.00 41.60 2.32
2853 5358 0.622136 GGGTGGGGTAGACCGAATTT 59.378 55.000 0.00 0.00 41.60 1.82
2854 5359 0.253020 AGGGTGGGGTAGACCGAATT 60.253 55.000 0.00 0.00 41.60 2.17
2855 5360 0.690077 GAGGGTGGGGTAGACCGAAT 60.690 60.000 0.00 0.00 41.60 3.34
2856 5361 1.305549 GAGGGTGGGGTAGACCGAA 60.306 63.158 0.00 0.00 41.60 4.30
2857 5362 2.220786 GAGAGGGTGGGGTAGACCGA 62.221 65.000 0.00 0.00 41.60 4.69
2858 5363 1.757340 GAGAGGGTGGGGTAGACCG 60.757 68.421 0.00 0.00 41.60 4.79
2859 5364 0.042881 AAGAGAGGGTGGGGTAGACC 59.957 60.000 0.00 0.00 39.11 3.85
2860 5365 1.196012 CAAGAGAGGGTGGGGTAGAC 58.804 60.000 0.00 0.00 0.00 2.59
2861 5366 1.089978 TCAAGAGAGGGTGGGGTAGA 58.910 55.000 0.00 0.00 0.00 2.59
2862 5367 1.196012 GTCAAGAGAGGGTGGGGTAG 58.804 60.000 0.00 0.00 0.00 3.18
2863 5368 0.490017 TGTCAAGAGAGGGTGGGGTA 59.510 55.000 0.00 0.00 0.00 3.69
2864 5369 0.178861 ATGTCAAGAGAGGGTGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
2865 5370 0.995024 AATGTCAAGAGAGGGTGGGG 59.005 55.000 0.00 0.00 0.00 4.96
2866 5371 1.912043 AGAATGTCAAGAGAGGGTGGG 59.088 52.381 0.00 0.00 0.00 4.61
2867 5372 2.093235 GGAGAATGTCAAGAGAGGGTGG 60.093 54.545 0.00 0.00 0.00 4.61
2868 5373 2.417924 CGGAGAATGTCAAGAGAGGGTG 60.418 54.545 0.00 0.00 0.00 4.61
2869 5374 1.827969 CGGAGAATGTCAAGAGAGGGT 59.172 52.381 0.00 0.00 0.00 4.34
2870 5375 1.472376 GCGGAGAATGTCAAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
2871 5376 1.205655 TGCGGAGAATGTCAAGAGAGG 59.794 52.381 0.00 0.00 0.00 3.69
2872 5377 2.266554 GTGCGGAGAATGTCAAGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
2873 5378 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
2874 5379 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
2875 5380 1.014044 GCGTGCGGAGAATGTCAAGA 61.014 55.000 0.00 0.00 0.00 3.02
2876 5381 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
2877 5382 0.602638 AAGCGTGCGGAGAATGTCAA 60.603 50.000 0.00 0.00 0.00 3.18
2878 5383 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
2879 5384 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
2880 5385 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
2881 5386 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
2882 5387 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
2883 5388 1.740296 GGCTAAAGCGTGCGGAGAA 60.740 57.895 0.00 0.00 43.26 2.87
2884 5389 2.125673 GGCTAAAGCGTGCGGAGA 60.126 61.111 0.00 0.00 43.26 3.71
2885 5390 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
2886 5391 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
2887 5392 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
2888 5393 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
2889 5394 3.849953 CGGACGGCTAAAGCGTGC 61.850 66.667 0.00 0.00 43.26 5.34
2890 5395 3.849953 GCGGACGGCTAAAGCGTG 61.850 66.667 0.00 0.00 43.26 5.34
2899 5404 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
2900 5405 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
2901 5406 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
2902 5407 1.884926 GCTCCAGTGCATAGCGGAC 60.885 63.158 0.00 0.00 35.88 4.79
2903 5408 1.617018 AAGCTCCAGTGCATAGCGGA 61.617 55.000 0.00 0.00 41.19 5.54
2904 5409 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
2905 5410 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
2906 5411 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
2907 5412 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
2908 5413 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
2909 5414 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
2910 5415 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
2911 5416 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
2912 5417 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
2913 5418 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
2914 5419 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
2915 5420 2.123632 AGGCCTCCAGAAGCTCCA 59.876 61.111 0.00 0.00 0.00 3.86
2916 5421 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
2917 5422 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
2918 5423 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
2920 5425 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
2921 5426 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
2923 5428 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.00 41.24 3.86
2924 5429 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.00 41.24 3.86
2925 5430 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.00 41.24 4.30
2926 5431 1.849976 GCATATTCAGCGCAGGCCTC 61.850 60.000 11.47 0.00 41.24 4.70
2927 5432 1.895707 GCATATTCAGCGCAGGCCT 60.896 57.895 11.47 0.00 41.24 5.19
2928 5433 2.641559 GCATATTCAGCGCAGGCC 59.358 61.111 11.47 0.00 41.24 5.19
2929 5434 2.641559 GGCATATTCAGCGCAGGC 59.358 61.111 11.47 0.29 40.37 4.85
2930 5435 3.348236 GGGCATATTCAGCGCAGG 58.652 61.111 11.47 0.20 43.54 4.85
2933 5438 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.00 44.24 5.92
2934 5439 1.102154 TGGTTTGGGCATATTCAGCG 58.898 50.000 0.00 0.00 0.00 5.18
2935 5440 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
2936 5441 4.209538 TGAGATGGTTTGGGCATATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
2937 5442 4.079844 TCTGAGATGGTTTGGGCATATTCA 60.080 41.667 0.00 0.00 0.00 2.57
2938 5443 4.276926 GTCTGAGATGGTTTGGGCATATTC 59.723 45.833 0.00 0.00 0.00 1.75
2939 5444 4.210331 GTCTGAGATGGTTTGGGCATATT 58.790 43.478 0.00 0.00 0.00 1.28
2940 5445 3.745480 CGTCTGAGATGGTTTGGGCATAT 60.745 47.826 0.00 0.00 0.00 1.78
2941 5446 2.419990 CGTCTGAGATGGTTTGGGCATA 60.420 50.000 0.00 0.00 0.00 3.14
2942 5447 1.679944 CGTCTGAGATGGTTTGGGCAT 60.680 52.381 0.00 0.00 0.00 4.40
2943 5448 0.321564 CGTCTGAGATGGTTTGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
2944 5449 0.036388 TCGTCTGAGATGGTTTGGGC 60.036 55.000 1.24 0.00 0.00 5.36
2945 5450 2.283298 CATCGTCTGAGATGGTTTGGG 58.717 52.381 1.24 0.00 43.07 4.12
2946 5451 3.125829 CAACATCGTCTGAGATGGTTTGG 59.874 47.826 16.20 0.00 45.46 3.28
2947 5452 3.125829 CCAACATCGTCTGAGATGGTTTG 59.874 47.826 16.20 12.97 45.46 2.93
2948 5453 3.007940 TCCAACATCGTCTGAGATGGTTT 59.992 43.478 16.20 0.00 45.46 3.27
2949 5454 2.567169 TCCAACATCGTCTGAGATGGTT 59.433 45.455 16.20 0.00 45.46 3.67
2953 5458 3.854666 CTTGTCCAACATCGTCTGAGAT 58.145 45.455 0.00 0.00 0.00 2.75
2954 5459 2.610479 GCTTGTCCAACATCGTCTGAGA 60.610 50.000 0.00 0.00 0.00 3.27
2955 5460 1.728971 GCTTGTCCAACATCGTCTGAG 59.271 52.381 0.00 0.00 0.00 3.35
2956 5461 1.344438 AGCTTGTCCAACATCGTCTGA 59.656 47.619 0.00 0.00 0.00 3.27
2957 5462 1.800805 AGCTTGTCCAACATCGTCTG 58.199 50.000 0.00 0.00 0.00 3.51
2958 5463 2.037772 AGAAGCTTGTCCAACATCGTCT 59.962 45.455 2.10 0.00 0.00 4.18
2959 5464 2.413453 GAGAAGCTTGTCCAACATCGTC 59.587 50.000 12.50 0.00 0.00 4.20
2960 5465 2.037772 AGAGAAGCTTGTCCAACATCGT 59.962 45.455 19.26 0.00 0.00 3.73
2961 5466 2.693069 AGAGAAGCTTGTCCAACATCG 58.307 47.619 19.26 0.00 0.00 3.84
2962 5467 4.067896 TGAAGAGAAGCTTGTCCAACATC 58.932 43.478 19.26 10.83 36.83 3.06
2963 5468 4.090761 TGAAGAGAAGCTTGTCCAACAT 57.909 40.909 19.26 0.00 36.83 2.71
2964 5469 3.558931 TGAAGAGAAGCTTGTCCAACA 57.441 42.857 19.26 13.75 36.83 3.33
2965 5470 5.218139 CAATTGAAGAGAAGCTTGTCCAAC 58.782 41.667 19.26 11.55 36.83 3.77
2966 5471 4.279169 CCAATTGAAGAGAAGCTTGTCCAA 59.721 41.667 19.26 16.61 36.83 3.53
2967 5472 3.822735 CCAATTGAAGAGAAGCTTGTCCA 59.177 43.478 19.26 8.99 36.83 4.02
2968 5473 3.823304 ACCAATTGAAGAGAAGCTTGTCC 59.177 43.478 19.26 6.46 36.83 4.02
2969 5474 4.791974 CACCAATTGAAGAGAAGCTTGTC 58.208 43.478 15.54 15.54 36.83 3.18
2970 5475 3.005155 GCACCAATTGAAGAGAAGCTTGT 59.995 43.478 2.10 0.00 36.83 3.16
2971 5476 3.255149 AGCACCAATTGAAGAGAAGCTTG 59.745 43.478 2.10 0.00 36.83 4.01
2972 5477 3.494332 AGCACCAATTGAAGAGAAGCTT 58.506 40.909 7.12 0.00 40.25 3.74
2973 5478 3.151912 AGCACCAATTGAAGAGAAGCT 57.848 42.857 7.12 3.13 0.00 3.74
2974 5479 4.006319 AGTAGCACCAATTGAAGAGAAGC 58.994 43.478 7.12 0.92 0.00 3.86
2975 5480 4.633565 GGAGTAGCACCAATTGAAGAGAAG 59.366 45.833 7.12 0.00 0.00 2.85
2976 5481 4.041567 TGGAGTAGCACCAATTGAAGAGAA 59.958 41.667 7.12 0.00 34.25 2.87
2977 5482 3.582647 TGGAGTAGCACCAATTGAAGAGA 59.417 43.478 7.12 0.00 34.25 3.10
2978 5483 3.942829 TGGAGTAGCACCAATTGAAGAG 58.057 45.455 7.12 0.00 34.25 2.85
2979 5484 4.072131 GTTGGAGTAGCACCAATTGAAGA 58.928 43.478 7.12 0.00 46.78 2.87
2980 5485 4.074970 AGTTGGAGTAGCACCAATTGAAG 58.925 43.478 7.12 0.00 46.78 3.02
2981 5486 4.072131 GAGTTGGAGTAGCACCAATTGAA 58.928 43.478 7.12 0.00 46.78 2.69
2982 5487 3.327757 AGAGTTGGAGTAGCACCAATTGA 59.672 43.478 7.12 0.00 46.78 2.57
2983 5488 3.679389 AGAGTTGGAGTAGCACCAATTG 58.321 45.455 0.00 0.00 46.78 2.32
2984 5489 5.426833 AGATAGAGTTGGAGTAGCACCAATT 59.573 40.000 0.00 0.00 46.78 2.32
2985 5490 4.965532 AGATAGAGTTGGAGTAGCACCAAT 59.034 41.667 0.00 0.00 46.78 3.16
2986 5491 4.353777 AGATAGAGTTGGAGTAGCACCAA 58.646 43.478 0.00 0.00 43.84 3.67
2987 5492 3.954904 GAGATAGAGTTGGAGTAGCACCA 59.045 47.826 0.00 0.00 35.47 4.17
2988 5493 3.003897 CGAGATAGAGTTGGAGTAGCACC 59.996 52.174 0.00 0.00 0.00 5.01
2989 5494 3.628487 ACGAGATAGAGTTGGAGTAGCAC 59.372 47.826 0.00 0.00 0.00 4.40
2990 5495 3.887352 ACGAGATAGAGTTGGAGTAGCA 58.113 45.455 0.00 0.00 0.00 3.49
2991 5496 7.549842 TGATATACGAGATAGAGTTGGAGTAGC 59.450 40.741 0.00 0.00 0.00 3.58
2992 5497 9.607988 ATGATATACGAGATAGAGTTGGAGTAG 57.392 37.037 0.00 0.00 0.00 2.57
2993 5498 9.602568 GATGATATACGAGATAGAGTTGGAGTA 57.397 37.037 0.00 0.00 0.00 2.59
2994 5499 8.103935 TGATGATATACGAGATAGAGTTGGAGT 58.896 37.037 0.00 0.00 0.00 3.85
2995 5500 8.499403 TGATGATATACGAGATAGAGTTGGAG 57.501 38.462 0.00 0.00 0.00 3.86
2996 5501 9.467796 AATGATGATATACGAGATAGAGTTGGA 57.532 33.333 0.00 0.00 0.00 3.53
2997 5502 9.729023 GAATGATGATATACGAGATAGAGTTGG 57.271 37.037 0.00 0.00 0.00 3.77
2998 5503 9.729023 GGAATGATGATATACGAGATAGAGTTG 57.271 37.037 0.00 0.00 0.00 3.16
2999 5504 8.616942 CGGAATGATGATATACGAGATAGAGTT 58.383 37.037 0.00 0.00 0.00 3.01
3000 5505 7.227711 CCGGAATGATGATATACGAGATAGAGT 59.772 40.741 0.00 0.00 0.00 3.24
3001 5506 7.442666 TCCGGAATGATGATATACGAGATAGAG 59.557 40.741 0.00 0.00 0.00 2.43
3002 5507 7.226918 GTCCGGAATGATGATATACGAGATAGA 59.773 40.741 5.23 0.00 0.00 1.98
3003 5508 7.227711 AGTCCGGAATGATGATATACGAGATAG 59.772 40.741 5.23 0.00 0.00 2.08
3004 5509 7.054751 AGTCCGGAATGATGATATACGAGATA 58.945 38.462 5.23 0.00 0.00 1.98
3005 5510 5.888724 AGTCCGGAATGATGATATACGAGAT 59.111 40.000 5.23 0.00 0.00 2.75
3006 5511 5.254115 AGTCCGGAATGATGATATACGAGA 58.746 41.667 5.23 0.00 0.00 4.04
3007 5512 5.568685 AGTCCGGAATGATGATATACGAG 57.431 43.478 5.23 0.00 0.00 4.18
3008 5513 4.094442 CGAGTCCGGAATGATGATATACGA 59.906 45.833 10.26 0.00 0.00 3.43
3009 5514 4.094442 TCGAGTCCGGAATGATGATATACG 59.906 45.833 10.26 2.94 36.24 3.06
3010 5515 5.562506 TCGAGTCCGGAATGATGATATAC 57.437 43.478 10.26 0.00 36.24 1.47
3011 5516 5.299531 GGATCGAGTCCGGAATGATGATATA 59.700 44.000 10.26 0.00 37.23 0.86
3012 5517 4.098654 GGATCGAGTCCGGAATGATGATAT 59.901 45.833 10.26 0.00 37.23 1.63
3013 5518 3.444034 GGATCGAGTCCGGAATGATGATA 59.556 47.826 10.26 0.00 37.23 2.15
3014 5519 2.232452 GGATCGAGTCCGGAATGATGAT 59.768 50.000 10.26 9.95 37.23 2.45
3015 5520 1.613925 GGATCGAGTCCGGAATGATGA 59.386 52.381 10.26 4.67 37.23 2.92
3016 5521 2.071688 GGATCGAGTCCGGAATGATG 57.928 55.000 10.26 0.00 37.23 3.07
3026 5531 1.096416 ACACGAGGAAGGATCGAGTC 58.904 55.000 1.94 0.00 39.27 3.36
3027 5532 0.811915 CACACGAGGAAGGATCGAGT 59.188 55.000 1.94 0.00 43.22 4.18
3028 5533 0.101399 CCACACGAGGAAGGATCGAG 59.899 60.000 1.94 0.00 42.76 4.04
3029 5534 1.945354 GCCACACGAGGAAGGATCGA 61.945 60.000 1.94 0.00 42.76 3.59
3030 5535 1.519455 GCCACACGAGGAAGGATCG 60.519 63.158 0.00 0.00 45.54 3.69
3031 5536 1.153349 GGCCACACGAGGAAGGATC 60.153 63.158 0.00 0.00 0.00 3.36
3032 5537 1.918293 TGGCCACACGAGGAAGGAT 60.918 57.895 0.00 0.00 0.00 3.24
3033 5538 2.525629 TGGCCACACGAGGAAGGA 60.526 61.111 0.00 0.00 0.00 3.36
3034 5539 2.358737 GTGGCCACACGAGGAAGG 60.359 66.667 31.23 0.00 37.94 3.46
3044 5549 0.035152 TGAGATGGATGTGTGGCCAC 60.035 55.000 29.67 29.67 42.19 5.01
3045 5550 0.697658 TTGAGATGGATGTGTGGCCA 59.302 50.000 0.00 0.00 38.78 5.36
3046 5551 1.098050 GTTGAGATGGATGTGTGGCC 58.902 55.000 0.00 0.00 0.00 5.36
3047 5552 1.825090 TGTTGAGATGGATGTGTGGC 58.175 50.000 0.00 0.00 0.00 5.01
3048 5553 3.557185 CGTATGTTGAGATGGATGTGTGG 59.443 47.826 0.00 0.00 0.00 4.17
3049 5554 3.001634 GCGTATGTTGAGATGGATGTGTG 59.998 47.826 0.00 0.00 0.00 3.82
3050 5555 3.198068 GCGTATGTTGAGATGGATGTGT 58.802 45.455 0.00 0.00 0.00 3.72
3051 5556 3.197265 TGCGTATGTTGAGATGGATGTG 58.803 45.455 0.00 0.00 0.00 3.21
3052 5557 3.541996 TGCGTATGTTGAGATGGATGT 57.458 42.857 0.00 0.00 0.00 3.06
3053 5558 4.658713 GATGCGTATGTTGAGATGGATG 57.341 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.