Multiple sequence alignment - TraesCS6D01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G166900 chr6D 100.000 4407 0 0 1 4407 149302145 149306551 0.000000e+00 8139
1 TraesCS6D01G166900 chr6B 90.549 4063 152 73 427 4403 262273017 262276933 0.000000e+00 5162
2 TraesCS6D01G166900 chr6B 85.242 393 33 15 1 382 262272690 262273068 8.940000e-102 381
3 TraesCS6D01G166900 chr6B 85.507 345 27 11 315 654 262271717 262272043 5.460000e-89 339
4 TraesCS6D01G166900 chr6B 89.011 182 17 3 5 186 262267112 262267290 5.740000e-54 222
5 TraesCS6D01G166900 chr6A 92.480 3125 124 45 906 3976 196871573 196868506 0.000000e+00 4366
6 TraesCS6D01G166900 chr6A 89.889 900 46 22 1 870 196872458 196871574 0.000000e+00 1116
7 TraesCS6D01G166900 chr6A 91.932 409 16 9 3960 4354 196868485 196868080 1.380000e-154 556
8 TraesCS6D01G166900 chr7B 78.700 1000 163 35 2361 3342 468406624 468405657 4.840000e-174 621
9 TraesCS6D01G166900 chr7B 83.195 601 68 24 1771 2363 468407320 468406745 1.820000e-143 520
10 TraesCS6D01G166900 chr7D 78.571 1008 161 40 2361 3342 450246024 450245046 8.100000e-172 614
11 TraesCS6D01G166900 chr7D 83.000 600 74 20 1771 2363 450246722 450246144 6.530000e-143 518
12 TraesCS6D01G166900 chr7A 83.361 601 76 17 1771 2363 546263465 546262881 6.490000e-148 534
13 TraesCS6D01G166900 chr7A 89.243 251 27 0 1077 1327 546263827 546263577 9.200000e-82 315
14 TraesCS6D01G166900 chr7A 78.641 412 70 14 2361 2763 546262763 546262361 1.570000e-64 257
15 TraesCS6D01G166900 chr3A 88.667 150 17 0 2576 2725 103619208 103619059 2.710000e-42 183
16 TraesCS6D01G166900 chr3B 88.158 152 18 0 2574 2725 136801229 136801078 9.740000e-42 182
17 TraesCS6D01G166900 chr3D 88.000 150 18 0 2576 2725 86936842 86936693 1.260000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G166900 chr6D 149302145 149306551 4406 False 8139.000000 8139 100.000000 1 4407 1 chr6D.!!$F1 4406
1 TraesCS6D01G166900 chr6B 262271717 262276933 5216 False 1960.666667 5162 87.099333 1 4403 3 chr6B.!!$F2 4402
2 TraesCS6D01G166900 chr6A 196868080 196872458 4378 True 2012.666667 4366 91.433667 1 4354 3 chr6A.!!$R1 4353
3 TraesCS6D01G166900 chr7B 468405657 468407320 1663 True 570.500000 621 80.947500 1771 3342 2 chr7B.!!$R1 1571
4 TraesCS6D01G166900 chr7D 450245046 450246722 1676 True 566.000000 614 80.785500 1771 3342 2 chr7D.!!$R1 1571
5 TraesCS6D01G166900 chr7A 546262361 546263827 1466 True 368.666667 534 83.748333 1077 2763 3 chr7A.!!$R1 1686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 1629 0.371989 GCGCACCAAACAAAACCAAC 59.628 50.0 0.30 0.0 0.00 3.77 F
912 1933 0.603569 GCACGACCCAGAGAGAAGAA 59.396 55.0 0.00 0.0 0.00 2.52 F
2080 3200 0.813184 ACGGTTCGATGTACGGATGT 59.187 50.0 0.87 0.0 42.82 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 2593 0.599991 TCACAAACAGACGCGCAGAT 60.600 50.0 5.73 0.00 0.0 2.90 R
2860 4160 0.875908 GAGTGTGTGTCAGCGCTTGA 60.876 55.0 7.50 6.28 0.0 3.02 R
3552 4883 0.393077 ACACACTACACAGCAGGGTC 59.607 55.0 0.00 0.00 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 1048 7.106239 AGTGTCAATAAATCGGAAATGAGACT 58.894 34.615 0.00 0.00 36.82 3.24
79 1054 8.543774 CAATAAATCGGAAATGAGACTGTAGAC 58.456 37.037 0.00 0.00 0.00 2.59
174 1159 4.055360 GCTGCTTTAACGGAAATGGTTTT 58.945 39.130 0.00 0.00 0.00 2.43
175 1160 4.509970 GCTGCTTTAACGGAAATGGTTTTT 59.490 37.500 0.00 0.00 0.00 1.94
184 1169 4.096081 ACGGAAATGGTTTTTGTACGACAA 59.904 37.500 0.00 0.00 36.11 3.18
247 1233 2.933666 CATGCTATGGCTCACGCG 59.066 61.111 3.53 3.53 39.59 6.01
265 1251 0.877649 CGCCGATTGTCTCTGATGGG 60.878 60.000 0.00 0.00 0.00 4.00
275 1261 1.486310 TCTCTGATGGGGTTTCATCGG 59.514 52.381 7.20 7.20 46.54 4.18
289 1275 5.758296 GGTTTCATCGGAAGTATAGCATTGA 59.242 40.000 0.00 0.00 33.82 2.57
337 1323 9.837525 CAGTAAGATATATTGTACCGGAACTAC 57.162 37.037 9.46 0.00 0.00 2.73
361 1347 8.754258 ACTATCTCTAACCATCTACTACCCTA 57.246 38.462 0.00 0.00 0.00 3.53
367 1353 8.515927 TCTAACCATCTACTACCCTACTATCA 57.484 38.462 0.00 0.00 0.00 2.15
622 1629 0.371989 GCGCACCAAACAAAACCAAC 59.628 50.000 0.30 0.00 0.00 3.77
625 1632 2.014574 GCACCAAACAAAACCAACCCC 61.015 52.381 0.00 0.00 0.00 4.95
801 1822 0.692756 CCCTTCCTTCTCCTCCTCCC 60.693 65.000 0.00 0.00 0.00 4.30
893 1914 2.174349 GCTCCAAGAAACGCAGCG 59.826 61.111 14.82 14.82 0.00 5.18
899 1920 3.223435 AAGAAACGCAGCGCACGAC 62.223 57.895 26.41 16.76 0.00 4.34
912 1933 0.603569 GCACGACCCAGAGAGAAGAA 59.396 55.000 0.00 0.00 0.00 2.52
913 1934 1.403514 GCACGACCCAGAGAGAAGAAG 60.404 57.143 0.00 0.00 0.00 2.85
914 1935 2.163509 CACGACCCAGAGAGAAGAAGA 58.836 52.381 0.00 0.00 0.00 2.87
915 1936 2.558795 CACGACCCAGAGAGAAGAAGAA 59.441 50.000 0.00 0.00 0.00 2.52
916 1937 2.559231 ACGACCCAGAGAGAAGAAGAAC 59.441 50.000 0.00 0.00 0.00 3.01
917 1938 2.414824 CGACCCAGAGAGAAGAAGAACG 60.415 54.545 0.00 0.00 0.00 3.95
923 1944 1.980156 GAGAGAAGAAGAACGACGCAC 59.020 52.381 0.00 0.00 0.00 5.34
1305 2339 2.308690 GTCCTCGCCTTCTACCACTAT 58.691 52.381 0.00 0.00 0.00 2.12
1392 2432 1.468895 CGCACACGTATACGCATGTA 58.531 50.000 24.64 0.00 44.43 2.29
1424 2472 2.906691 AGTATCTCAGCCAGCATCAC 57.093 50.000 0.00 0.00 0.00 3.06
1497 2545 2.786777 TGCATCTGCTTGTTGATCTGT 58.213 42.857 3.53 0.00 42.66 3.41
1504 2552 2.087646 GCTTGTTGATCTGTTCCCTCC 58.912 52.381 0.00 0.00 0.00 4.30
1545 2593 3.093057 GTTTGGCTCCTCTCTCTGTCTA 58.907 50.000 0.00 0.00 0.00 2.59
1649 2697 2.647683 TGCGCATATGGGGTTTATGA 57.352 45.000 20.15 0.00 30.16 2.15
1662 2710 4.201980 GGGGTTTATGACATTTACTTCGCC 60.202 45.833 0.00 0.00 0.00 5.54
1727 2796 3.071874 TGAATGGCAATTTCCGTCTCT 57.928 42.857 0.00 0.00 0.00 3.10
1729 2798 3.440173 TGAATGGCAATTTCCGTCTCTTC 59.560 43.478 0.00 0.00 0.00 2.87
2080 3200 0.813184 ACGGTTCGATGTACGGATGT 59.187 50.000 0.87 0.00 42.82 3.06
2283 3404 4.430765 AGCTACAACGACGGCCGG 62.431 66.667 31.76 15.62 43.93 6.13
2784 4084 4.383861 CTCACAGCTCTGCCGCCA 62.384 66.667 0.00 0.00 0.00 5.69
2860 4160 1.201414 GGGCGTTTCGGTCATTTCATT 59.799 47.619 0.00 0.00 0.00 2.57
3251 4556 3.528370 AGCGGTTCGAGATCCGGG 61.528 66.667 20.07 0.00 45.85 5.73
3376 4687 1.972223 CACGACGTCCTCCTGTCCT 60.972 63.158 10.58 0.00 0.00 3.85
3377 4688 1.674980 ACGACGTCCTCCTGTCCTC 60.675 63.158 10.58 0.00 0.00 3.71
3378 4689 2.408241 CGACGTCCTCCTGTCCTCC 61.408 68.421 10.58 0.00 0.00 4.30
3382 4693 2.039624 TCCTCCTGTCCTCCCAGC 59.960 66.667 0.00 0.00 0.00 4.85
3392 4703 3.732849 CTCCCAGCCCCCAGTTCC 61.733 72.222 0.00 0.00 0.00 3.62
3394 4705 3.268032 CCCAGCCCCCAGTTCCTT 61.268 66.667 0.00 0.00 0.00 3.36
3418 4729 3.561725 GTCAAAACTGACAGAACAGGAGG 59.438 47.826 10.08 0.00 41.59 4.30
3433 4744 3.515901 ACAGGAGGATGTTTCCACTAGAC 59.484 47.826 0.00 0.00 45.30 2.59
3491 4814 1.152881 GTGGATGGACATGGAGCCC 60.153 63.158 0.00 0.00 0.00 5.19
3494 4817 1.453669 GATGGACATGGAGCCCCTC 59.546 63.158 0.00 0.00 0.00 4.30
3516 4842 4.328983 TCGAACGAAAATCATAGGACAAGC 59.671 41.667 0.00 0.00 0.00 4.01
3542 4873 3.540367 GACCGAAACGCCCCTCCAA 62.540 63.158 0.00 0.00 0.00 3.53
3565 4896 3.000819 CCCCGACCCTGCTGTGTA 61.001 66.667 0.00 0.00 0.00 2.90
3566 4897 2.579201 CCCGACCCTGCTGTGTAG 59.421 66.667 0.00 0.00 0.00 2.74
3567 4898 2.283529 CCCGACCCTGCTGTGTAGT 61.284 63.158 0.00 0.00 0.00 2.73
3572 4903 1.616865 GACCCTGCTGTGTAGTGTGTA 59.383 52.381 0.00 0.00 0.00 2.90
3708 5040 3.883549 GATCAGGCCAGCCCCCTC 61.884 72.222 5.01 0.00 36.58 4.30
3753 5085 2.941583 GGAGAAAGGCCCCCACCT 60.942 66.667 0.00 0.00 43.91 4.00
3834 5166 7.768582 TGTACAGATGTTTATTCCGTCATCATT 59.231 33.333 0.00 0.00 39.06 2.57
3865 5203 5.494632 TCGGGAAGAAAAGAAGTGAAAAC 57.505 39.130 0.00 0.00 0.00 2.43
3871 5209 6.183360 GGAAGAAAAGAAGTGAAAACGGTGTA 60.183 38.462 0.00 0.00 0.00 2.90
3872 5210 6.937436 AGAAAAGAAGTGAAAACGGTGTAT 57.063 33.333 0.00 0.00 0.00 2.29
3873 5211 6.725246 AGAAAAGAAGTGAAAACGGTGTATG 58.275 36.000 0.00 0.00 0.00 2.39
3875 5213 4.345859 AGAAGTGAAAACGGTGTATGGA 57.654 40.909 0.00 0.00 0.00 3.41
3972 5312 2.187946 CGGTGATCCTGCCTCCAC 59.812 66.667 0.00 0.00 0.00 4.02
3996 5373 7.742089 CACTATACAAAGAAGAAAGAACTTGCG 59.258 37.037 0.00 0.00 0.00 4.85
4022 5399 3.983044 AACAATCCTGGTCCTGTCTAC 57.017 47.619 0.00 0.00 0.00 2.59
4038 5415 5.190992 TGTCTACTGACTCGCTTTTGTTA 57.809 39.130 0.00 0.00 43.29 2.41
4041 5418 6.200286 TGTCTACTGACTCGCTTTTGTTAAAG 59.800 38.462 0.00 0.00 43.29 1.85
4052 5431 9.107367 CTCGCTTTTGTTAAAGAAAAGTCTATG 57.893 33.333 16.62 7.35 42.78 2.23
4083 5462 4.999311 GGAAATCCAAGCAAATTCAAAGCT 59.001 37.500 0.00 0.00 41.03 3.74
4089 5468 5.055812 CCAAGCAAATTCAAAGCTAACCAA 58.944 37.500 0.00 0.00 37.70 3.67
4091 5470 6.421405 CAAGCAAATTCAAAGCTAACCAAAC 58.579 36.000 0.00 0.00 37.70 2.93
4145 5524 6.963242 CAGAACATTCATACGAAAACCAGATG 59.037 38.462 0.00 0.00 34.01 2.90
4394 5788 1.656818 GCTCTCTCTCTCGTGCTGCT 61.657 60.000 0.00 0.00 0.00 4.24
4403 5797 2.664851 CGTGCTGCTCACCGGAAA 60.665 61.111 9.46 0.00 42.69 3.13
4404 5798 2.671177 CGTGCTGCTCACCGGAAAG 61.671 63.158 9.46 5.89 42.69 2.62
4405 5799 1.301716 GTGCTGCTCACCGGAAAGA 60.302 57.895 9.46 1.55 39.79 2.52
4406 5800 1.004560 TGCTGCTCACCGGAAAGAG 60.005 57.895 9.46 13.66 35.01 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 1048 6.156748 TGAGTTGTCTTGCTAAAGTCTACA 57.843 37.500 0.00 0.00 32.64 2.74
154 1139 5.420409 ACAAAAACCATTTCCGTTAAAGCA 58.580 33.333 0.00 0.00 0.00 3.91
174 1159 4.274421 TCGCACAAAAATTGTCGTACAA 57.726 36.364 11.72 3.49 43.23 2.41
175 1160 3.946308 TCGCACAAAAATTGTCGTACA 57.054 38.095 11.72 0.00 43.23 2.90
184 1169 3.002862 TCGTACAAGCTTCGCACAAAAAT 59.997 39.130 0.00 0.00 0.00 1.82
247 1233 0.533755 CCCCATCAGAGACAATCGGC 60.534 60.000 0.00 0.00 0.00 5.54
265 1251 5.758296 TCAATGCTATACTTCCGATGAAACC 59.242 40.000 0.00 0.00 0.00 3.27
337 1323 8.828751 AGTAGGGTAGTAGATGGTTAGAGATAG 58.171 40.741 0.00 0.00 0.00 2.08
361 1347 9.775539 TTGGAGGAAGCTATATCTAATGATAGT 57.224 33.333 0.00 0.00 38.42 2.12
413 1399 8.157476 ACTCCTGTAACAGTTTCAGTTCATTAT 58.843 33.333 16.32 0.00 0.00 1.28
481 1469 3.270027 TCGGCAGTTCCAGTTCATTATG 58.730 45.455 0.00 0.00 34.01 1.90
543 1539 6.067039 CACGAAATGCATATTGATAGACACG 58.933 40.000 0.00 0.00 0.00 4.49
605 1612 1.374560 GGGTTGGTTTTGTTTGGTGC 58.625 50.000 0.00 0.00 0.00 5.01
614 1621 0.113580 AGGCGTATGGGGTTGGTTTT 59.886 50.000 0.00 0.00 0.00 2.43
622 1629 0.401738 ATGATGGAAGGCGTATGGGG 59.598 55.000 0.00 0.00 0.00 4.96
625 1632 4.449068 GTGTTAGATGATGGAAGGCGTATG 59.551 45.833 0.00 0.00 0.00 2.39
801 1822 1.652947 AGGGCGGGGTTATATAGTGG 58.347 55.000 0.00 0.00 0.00 4.00
893 1914 0.603569 TTCTTCTCTCTGGGTCGTGC 59.396 55.000 0.00 0.00 0.00 5.34
899 1920 2.414824 CGTCGTTCTTCTTCTCTCTGGG 60.415 54.545 0.00 0.00 0.00 4.45
943 1966 4.536364 TCTTGTTTCTTGAAACAGAGCG 57.464 40.909 22.58 14.99 42.79 5.03
1305 2339 0.174845 CACCGTAGATCTTCCGCCAA 59.825 55.000 0.00 0.00 0.00 4.52
1392 2432 5.762218 GGCTGAGATACTATTCTTGCACAAT 59.238 40.000 0.00 0.00 31.45 2.71
1497 2545 2.454941 GACAGGGAGGGGAGGGAA 59.545 66.667 0.00 0.00 0.00 3.97
1504 2552 0.912486 AGAAAATCGGACAGGGAGGG 59.088 55.000 0.00 0.00 0.00 4.30
1545 2593 0.599991 TCACAAACAGACGCGCAGAT 60.600 50.000 5.73 0.00 0.00 2.90
1649 2697 3.369576 GGAGGAAGAGGCGAAGTAAATGT 60.370 47.826 0.00 0.00 0.00 2.71
1662 2710 1.548269 GGTGTCTGTGAGGAGGAAGAG 59.452 57.143 0.00 0.00 0.00 2.85
1727 2796 1.133363 TGACCCAAAAGGACGAGGAA 58.867 50.000 0.00 0.00 39.89 3.36
1729 2798 1.003118 TGATGACCCAAAAGGACGAGG 59.997 52.381 0.00 0.00 39.89 4.63
2067 3187 1.200483 GTCAGCACATCCGTACATCG 58.800 55.000 0.00 0.00 39.52 3.84
2072 3192 2.183300 GCCGTCAGCACATCCGTA 59.817 61.111 0.00 0.00 42.97 4.02
2101 3222 2.652530 CACCAGGCGCTGCAAAAT 59.347 55.556 7.64 0.00 0.00 1.82
2283 3404 2.981560 CTGCATGCCGAACACCACC 61.982 63.158 16.68 0.00 0.00 4.61
2523 3794 1.609072 CTCTGGCTGGCATTGATCATG 59.391 52.381 3.74 0.00 35.73 3.07
2860 4160 0.875908 GAGTGTGTGTCAGCGCTTGA 60.876 55.000 7.50 6.28 0.00 3.02
3251 4556 2.433664 CACGTAGTTGGGGGACGC 60.434 66.667 0.00 0.00 41.61 5.19
3354 4659 1.080705 CAGGAGGACGTCGTGGAAC 60.081 63.158 16.63 0.55 37.40 3.62
3361 4666 2.053277 GGGAGGACAGGAGGACGTC 61.053 68.421 7.13 7.13 0.00 4.34
3376 4687 3.829311 AAGGAACTGGGGGCTGGGA 62.829 63.158 0.00 0.00 40.86 4.37
3377 4688 2.856937 AAAGGAACTGGGGGCTGGG 61.857 63.158 0.00 0.00 40.86 4.45
3378 4689 1.607467 CAAAGGAACTGGGGGCTGG 60.607 63.158 0.00 0.00 40.86 4.85
3382 4693 2.080654 TTTGACAAAGGAACTGGGGG 57.919 50.000 0.00 0.00 40.86 5.40
3414 4725 5.202004 TCTAGTCTAGTGGAAACATCCTCC 58.798 45.833 6.77 0.00 46.14 4.30
3418 4729 9.145865 CTTCTTTTCTAGTCTAGTGGAAACATC 57.854 37.037 6.77 0.00 46.14 3.06
3433 4744 3.118223 CCTGCCCTACCCTTCTTTTCTAG 60.118 52.174 0.00 0.00 0.00 2.43
3473 4790 1.152881 GGGCTCCATGTCCATCCAC 60.153 63.158 0.00 0.00 40.97 4.02
3491 4814 4.430007 TGTCCTATGATTTTCGTTCGAGG 58.570 43.478 0.00 0.00 0.00 4.63
3494 4817 4.494199 GGCTTGTCCTATGATTTTCGTTCG 60.494 45.833 0.00 0.00 0.00 3.95
3516 4842 1.644786 GGCGTTTCGGTCATCTTGGG 61.645 60.000 0.00 0.00 0.00 4.12
3551 4882 0.667487 CACACTACACAGCAGGGTCG 60.667 60.000 0.00 0.00 0.00 4.79
3552 4883 0.393077 ACACACTACACAGCAGGGTC 59.607 55.000 0.00 0.00 0.00 4.46
3553 4884 1.712056 TACACACTACACAGCAGGGT 58.288 50.000 0.00 0.00 0.00 4.34
3562 4893 9.802039 TGGACTCACATATATATACACACTACA 57.198 33.333 0.00 0.00 0.00 2.74
3564 4895 9.462606 CCTGGACTCACATATATATACACACTA 57.537 37.037 0.00 0.00 0.00 2.74
3565 4896 7.950684 ACCTGGACTCACATATATATACACACT 59.049 37.037 0.00 0.00 0.00 3.55
3566 4897 8.029522 CACCTGGACTCACATATATATACACAC 58.970 40.741 0.00 0.00 0.00 3.82
3567 4898 7.947890 TCACCTGGACTCACATATATATACACA 59.052 37.037 0.00 0.00 0.00 3.72
3572 4903 9.997172 TTCTATCACCTGGACTCACATATATAT 57.003 33.333 0.00 0.00 0.00 0.86
3643 4975 4.087892 CTGACGGGTCCCAGGCAG 62.088 72.222 17.73 17.73 0.00 4.85
3657 4989 0.396060 GGGCATTTTTGGCAACCTGA 59.604 50.000 0.00 0.00 35.93 3.86
3740 5072 3.590574 GGTGAGGTGGGGGCCTTT 61.591 66.667 0.84 0.00 39.34 3.11
3753 5085 3.551635 AGAAGAAAGGAGGAGAGGTGA 57.448 47.619 0.00 0.00 0.00 4.02
3834 5166 1.124780 TTTCTTCCCGATGGGCGATA 58.875 50.000 0.00 0.00 43.94 2.92
3865 5203 9.151471 CAAGGAAATTATATACTCCATACACCG 57.849 37.037 7.23 0.00 0.00 4.94
3893 5232 2.094675 GCGTAAGGTAGACACAGGGTA 58.905 52.381 0.00 0.00 38.28 3.69
3996 5373 6.415573 AGACAGGACCAGGATTGTTAATTAC 58.584 40.000 0.00 0.00 0.00 1.89
4022 5399 6.967199 ACTTTTCTTTAACAAAAGCGAGTCAG 59.033 34.615 14.68 0.00 42.35 3.51
4038 5415 9.862149 TTTCCTACTTTCCATAGACTTTTCTTT 57.138 29.630 0.00 0.00 32.75 2.52
4041 5418 8.894731 GGATTTCCTACTTTCCATAGACTTTTC 58.105 37.037 0.00 0.00 0.00 2.29
4052 5431 5.722021 TTTGCTTGGATTTCCTACTTTCC 57.278 39.130 0.00 0.00 36.82 3.13
4083 5462 6.261381 AGCACAAAATTAGACTCGTTTGGTTA 59.739 34.615 9.14 0.00 35.69 2.85
4089 5468 5.510671 CACAAGCACAAAATTAGACTCGTT 58.489 37.500 0.00 0.00 0.00 3.85
4091 5470 3.908382 GCACAAGCACAAAATTAGACTCG 59.092 43.478 0.00 0.00 41.58 4.18
4248 5631 4.340246 CACAGGCAGAGGCAGGCA 62.340 66.667 0.00 0.00 43.71 4.75
4250 5633 3.201707 AACCACAGGCAGAGGCAGG 62.202 63.158 0.00 0.00 43.71 4.85
4371 5764 2.112198 CACGAGAGAGAGAGCCGCT 61.112 63.158 0.00 0.00 0.00 5.52
4374 5767 1.433064 CAGCACGAGAGAGAGAGCC 59.567 63.158 0.00 0.00 0.00 4.70
4377 5770 0.322008 TGAGCAGCACGAGAGAGAGA 60.322 55.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.