Multiple sequence alignment - TraesCS6D01G166000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G166000 chr6D 100.000 2872 0 0 1 2872 147123283 147126154 0.000000e+00 5304.0
1 TraesCS6D01G166000 chr6B 93.619 1332 58 13 432 1751 258235801 258234485 0.000000e+00 1964.0
2 TraesCS6D01G166000 chr6B 97.205 966 23 4 1908 2872 258234316 258233354 0.000000e+00 1631.0
3 TraesCS6D01G166000 chr6B 81.361 338 36 8 2399 2709 209983836 209984173 1.710000e-62 250.0
4 TraesCS6D01G166000 chr6A 94.150 1094 46 5 772 1847 200448109 200447016 0.000000e+00 1650.0
5 TraesCS6D01G166000 chr6A 96.923 390 12 0 1916 2305 200446908 200446519 0.000000e+00 654.0
6 TraesCS6D01G166000 chr6A 90.217 368 23 6 408 762 200450174 200449807 4.330000e-128 468.0
7 TraesCS6D01G166000 chr6A 99.401 167 1 0 203 369 84421062 84420896 1.290000e-78 303.0
8 TraesCS6D01G166000 chr6A 99.401 167 1 0 203 369 289135405 289135571 1.290000e-78 303.0
9 TraesCS6D01G166000 chr1B 86.186 333 34 2 2399 2719 530994327 530994659 1.640000e-92 350.0
10 TraesCS6D01G166000 chrUn 85.938 320 31 5 2402 2708 62157423 62157105 2.130000e-86 329.0
11 TraesCS6D01G166000 chrUn 100.000 167 0 0 203 369 417578369 417578535 2.780000e-80 309.0
12 TraesCS6D01G166000 chr7D 84.877 324 37 5 2398 2710 289443416 289443094 1.660000e-82 316.0
13 TraesCS6D01G166000 chr7D 100.000 167 0 0 203 369 382069453 382069619 2.780000e-80 309.0
14 TraesCS6D01G166000 chr7D 100.000 167 0 0 203 369 626728389 626728223 2.780000e-80 309.0
15 TraesCS6D01G166000 chr7A 86.139 303 29 8 2402 2699 116544773 116545067 5.970000e-82 315.0
16 TraesCS6D01G166000 chr5B 84.848 330 30 6 2402 2711 453988251 453987922 5.970000e-82 315.0
17 TraesCS6D01G166000 chr3D 100.000 167 0 0 203 369 501847484 501847650 2.780000e-80 309.0
18 TraesCS6D01G166000 chr4D 99.401 167 1 0 203 369 123384332 123384498 1.290000e-78 303.0
19 TraesCS6D01G166000 chr4D 99.401 167 1 0 203 369 450902113 450901947 1.290000e-78 303.0
20 TraesCS6D01G166000 chr1D 99.401 167 1 0 203 369 212462764 212462598 1.290000e-78 303.0
21 TraesCS6D01G166000 chr2A 84.912 285 41 2 2417 2699 750758501 750758785 1.300000e-73 287.0
22 TraesCS6D01G166000 chr2A 97.561 41 1 0 369 409 228417919 228417879 1.430000e-08 71.3
23 TraesCS6D01G166000 chr2A 97.561 41 1 0 369 409 228454338 228454298 1.430000e-08 71.3
24 TraesCS6D01G166000 chr5D 81.029 311 42 8 2402 2705 458723408 458723108 6.190000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G166000 chr6D 147123283 147126154 2871 False 5304.0 5304 100.000000 1 2872 1 chr6D.!!$F1 2871
1 TraesCS6D01G166000 chr6B 258233354 258235801 2447 True 1797.5 1964 95.412000 432 2872 2 chr6B.!!$R1 2440
2 TraesCS6D01G166000 chr6A 200446519 200450174 3655 True 924.0 1650 93.763333 408 2305 3 chr6A.!!$R2 1897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.041312 CACGGAAAAGGCTTGTGTCG 60.041 55.0 0.00 4.34 0.0 4.35 F
510 513 0.107017 ATTGGCCTCCCTCGTGAATG 60.107 55.0 3.32 0.00 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 3240 0.949397 CAGAAGAAGCAGCAGCACAA 59.051 50.0 3.17 0.0 45.49 3.33 R
2241 4047 0.677098 TGACCGCTAGAGTCGCTCTT 60.677 55.0 13.34 0.0 41.50 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.008242 AGCTATGCTCTCCCAGGTAG 57.992 55.000 0.00 0.00 30.62 3.18
26 27 1.501170 AGCTATGCTCTCCCAGGTAGA 59.499 52.381 0.00 0.00 30.62 2.59
27 28 1.892474 GCTATGCTCTCCCAGGTAGAG 59.108 57.143 4.60 4.60 42.84 2.43
28 29 2.489985 GCTATGCTCTCCCAGGTAGAGA 60.490 54.545 13.32 4.34 42.63 3.10
29 30 2.080654 ATGCTCTCCCAGGTAGAGAC 57.919 55.000 13.32 5.09 42.63 3.36
30 31 1.003646 TGCTCTCCCAGGTAGAGACT 58.996 55.000 13.32 0.00 42.63 3.24
31 32 1.064314 TGCTCTCCCAGGTAGAGACTC 60.064 57.143 13.32 0.00 42.63 3.36
32 33 1.961793 CTCTCCCAGGTAGAGACTCG 58.038 60.000 2.70 0.00 42.63 4.18
33 34 0.107116 TCTCCCAGGTAGAGACTCGC 60.107 60.000 0.00 0.00 35.46 5.03
34 35 1.440938 CTCCCAGGTAGAGACTCGCG 61.441 65.000 0.00 0.00 32.86 5.87
35 36 1.749638 CCCAGGTAGAGACTCGCGT 60.750 63.158 5.77 0.00 0.00 6.01
36 37 0.463295 CCCAGGTAGAGACTCGCGTA 60.463 60.000 5.77 0.00 0.00 4.42
37 38 0.656785 CCAGGTAGAGACTCGCGTAC 59.343 60.000 5.77 0.00 0.00 3.67
38 39 0.656785 CAGGTAGAGACTCGCGTACC 59.343 60.000 5.77 9.73 36.01 3.34
39 40 0.540923 AGGTAGAGACTCGCGTACCT 59.459 55.000 15.80 15.80 40.43 3.08
40 41 1.759445 AGGTAGAGACTCGCGTACCTA 59.241 52.381 18.98 7.09 42.88 3.08
41 42 2.134346 GGTAGAGACTCGCGTACCTAG 58.866 57.143 5.77 0.00 33.43 3.02
42 43 1.526464 GTAGAGACTCGCGTACCTAGC 59.474 57.143 5.77 0.00 0.00 3.42
43 44 0.814812 AGAGACTCGCGTACCTAGCC 60.815 60.000 5.77 0.00 0.00 3.93
44 45 1.077930 AGACTCGCGTACCTAGCCA 60.078 57.895 5.77 0.00 0.00 4.75
45 46 0.679002 AGACTCGCGTACCTAGCCAA 60.679 55.000 5.77 0.00 0.00 4.52
46 47 0.525029 GACTCGCGTACCTAGCCAAC 60.525 60.000 5.77 0.00 0.00 3.77
47 48 1.585521 CTCGCGTACCTAGCCAACG 60.586 63.158 5.77 5.64 39.55 4.10
48 49 2.180017 CGCGTACCTAGCCAACGT 59.820 61.111 0.00 0.00 38.81 3.99
49 50 2.156446 CGCGTACCTAGCCAACGTG 61.156 63.158 0.00 9.27 40.23 4.49
50 51 1.808390 GCGTACCTAGCCAACGTGG 60.808 63.158 10.23 0.00 41.55 4.94
51 52 1.588082 CGTACCTAGCCAACGTGGT 59.412 57.895 0.00 0.00 40.46 4.16
52 53 0.457337 CGTACCTAGCCAACGTGGTC 60.457 60.000 0.00 0.00 40.46 4.02
53 54 0.893447 GTACCTAGCCAACGTGGTCT 59.107 55.000 0.00 0.00 40.46 3.85
54 55 2.094675 GTACCTAGCCAACGTGGTCTA 58.905 52.381 0.00 0.00 40.46 2.59
55 56 0.893447 ACCTAGCCAACGTGGTCTAC 59.107 55.000 0.00 0.00 40.46 2.59
66 67 2.538512 GTGGTCTACGGGAAGTGTTT 57.461 50.000 0.00 0.00 0.00 2.83
67 68 2.842457 GTGGTCTACGGGAAGTGTTTT 58.158 47.619 0.00 0.00 0.00 2.43
68 69 2.546789 GTGGTCTACGGGAAGTGTTTTG 59.453 50.000 0.00 0.00 0.00 2.44
69 70 2.435069 TGGTCTACGGGAAGTGTTTTGA 59.565 45.455 0.00 0.00 0.00 2.69
70 71 3.071892 TGGTCTACGGGAAGTGTTTTGAT 59.928 43.478 0.00 0.00 0.00 2.57
71 72 4.070009 GGTCTACGGGAAGTGTTTTGATT 58.930 43.478 0.00 0.00 0.00 2.57
72 73 5.221682 TGGTCTACGGGAAGTGTTTTGATTA 60.222 40.000 0.00 0.00 0.00 1.75
73 74 5.350640 GGTCTACGGGAAGTGTTTTGATTAG 59.649 44.000 0.00 0.00 0.00 1.73
74 75 5.930569 GTCTACGGGAAGTGTTTTGATTAGT 59.069 40.000 0.00 0.00 0.00 2.24
75 76 7.092716 GTCTACGGGAAGTGTTTTGATTAGTA 58.907 38.462 0.00 0.00 0.00 1.82
76 77 7.763071 GTCTACGGGAAGTGTTTTGATTAGTAT 59.237 37.037 0.00 0.00 0.00 2.12
77 78 6.980051 ACGGGAAGTGTTTTGATTAGTATC 57.020 37.500 0.00 0.00 0.00 2.24
78 79 6.469410 ACGGGAAGTGTTTTGATTAGTATCA 58.531 36.000 0.00 0.00 39.00 2.15
79 80 6.594159 ACGGGAAGTGTTTTGATTAGTATCAG 59.406 38.462 0.00 0.00 41.60 2.90
80 81 6.037172 CGGGAAGTGTTTTGATTAGTATCAGG 59.963 42.308 0.00 0.00 41.60 3.86
81 82 6.884836 GGGAAGTGTTTTGATTAGTATCAGGT 59.115 38.462 0.00 0.00 41.60 4.00
82 83 7.393515 GGGAAGTGTTTTGATTAGTATCAGGTT 59.606 37.037 0.00 0.00 41.60 3.50
83 84 8.451748 GGAAGTGTTTTGATTAGTATCAGGTTC 58.548 37.037 0.00 0.00 41.60 3.62
84 85 7.596749 AGTGTTTTGATTAGTATCAGGTTCG 57.403 36.000 0.00 0.00 41.60 3.95
85 86 6.092259 AGTGTTTTGATTAGTATCAGGTTCGC 59.908 38.462 0.00 0.00 41.60 4.70
86 87 6.092259 GTGTTTTGATTAGTATCAGGTTCGCT 59.908 38.462 0.00 0.00 41.60 4.93
87 88 7.277098 GTGTTTTGATTAGTATCAGGTTCGCTA 59.723 37.037 0.00 0.00 41.60 4.26
88 89 7.491372 TGTTTTGATTAGTATCAGGTTCGCTAG 59.509 37.037 0.00 0.00 41.60 3.42
89 90 5.122512 TGATTAGTATCAGGTTCGCTAGC 57.877 43.478 4.06 4.06 35.87 3.42
90 91 4.827835 TGATTAGTATCAGGTTCGCTAGCT 59.172 41.667 13.93 0.00 35.87 3.32
91 92 5.302059 TGATTAGTATCAGGTTCGCTAGCTT 59.698 40.000 13.93 0.00 35.87 3.74
92 93 5.593679 TTAGTATCAGGTTCGCTAGCTTT 57.406 39.130 13.93 0.00 30.51 3.51
93 94 4.473477 AGTATCAGGTTCGCTAGCTTTT 57.527 40.909 13.93 0.00 30.51 2.27
94 95 5.593679 AGTATCAGGTTCGCTAGCTTTTA 57.406 39.130 13.93 0.00 30.51 1.52
95 96 6.163135 AGTATCAGGTTCGCTAGCTTTTAT 57.837 37.500 13.93 0.09 30.51 1.40
96 97 7.286215 AGTATCAGGTTCGCTAGCTTTTATA 57.714 36.000 13.93 0.00 30.51 0.98
97 98 7.897864 AGTATCAGGTTCGCTAGCTTTTATAT 58.102 34.615 13.93 1.22 30.51 0.86
98 99 8.368668 AGTATCAGGTTCGCTAGCTTTTATATT 58.631 33.333 13.93 0.00 30.51 1.28
99 100 7.659652 ATCAGGTTCGCTAGCTTTTATATTC 57.340 36.000 13.93 0.00 30.51 1.75
100 101 6.578944 TCAGGTTCGCTAGCTTTTATATTCA 58.421 36.000 13.93 0.00 30.51 2.57
101 102 7.217200 TCAGGTTCGCTAGCTTTTATATTCAT 58.783 34.615 13.93 0.00 30.51 2.57
102 103 8.364894 TCAGGTTCGCTAGCTTTTATATTCATA 58.635 33.333 13.93 0.00 30.51 2.15
103 104 8.988934 CAGGTTCGCTAGCTTTTATATTCATAA 58.011 33.333 13.93 0.00 30.51 1.90
104 105 9.726438 AGGTTCGCTAGCTTTTATATTCATAAT 57.274 29.630 13.93 0.00 0.00 1.28
128 129 8.691661 ATAATGTATTATTCACGGAAAAGGCT 57.308 30.769 0.00 0.00 28.99 4.58
129 130 7.404671 AATGTATTATTCACGGAAAAGGCTT 57.595 32.000 0.00 0.00 0.00 4.35
130 131 6.189677 TGTATTATTCACGGAAAAGGCTTG 57.810 37.500 0.00 0.00 0.00 4.01
131 132 5.708230 TGTATTATTCACGGAAAAGGCTTGT 59.292 36.000 0.00 0.00 0.00 3.16
132 133 4.497473 TTATTCACGGAAAAGGCTTGTG 57.503 40.909 0.00 4.71 0.00 3.33
133 134 1.757682 TTCACGGAAAAGGCTTGTGT 58.242 45.000 13.20 2.56 32.55 3.72
134 135 1.305201 TCACGGAAAAGGCTTGTGTC 58.695 50.000 13.20 6.37 32.55 3.67
135 136 0.041312 CACGGAAAAGGCTTGTGTCG 60.041 55.000 0.00 4.34 0.00 4.35
136 137 1.082104 CGGAAAAGGCTTGTGTCGC 60.082 57.895 0.00 0.00 0.00 5.19
137 138 1.781025 CGGAAAAGGCTTGTGTCGCA 61.781 55.000 0.00 0.00 0.00 5.10
138 139 0.317854 GGAAAAGGCTTGTGTCGCAC 60.318 55.000 0.00 3.44 34.56 5.34
139 140 0.380378 GAAAAGGCTTGTGTCGCACA 59.620 50.000 0.00 8.32 43.02 4.57
148 149 2.967459 TGTGTCGCACAATGCTAAAG 57.033 45.000 9.71 0.00 41.69 1.85
149 150 2.488952 TGTGTCGCACAATGCTAAAGA 58.511 42.857 9.71 0.00 41.69 2.52
150 151 2.480037 TGTGTCGCACAATGCTAAAGAG 59.520 45.455 9.71 0.00 41.69 2.85
151 152 2.736721 GTGTCGCACAATGCTAAAGAGA 59.263 45.455 5.30 0.00 42.25 3.10
152 153 2.736721 TGTCGCACAATGCTAAAGAGAC 59.263 45.455 0.00 0.00 42.25 3.36
153 154 1.992667 TCGCACAATGCTAAAGAGACG 59.007 47.619 0.00 0.00 42.25 4.18
154 155 1.726791 CGCACAATGCTAAAGAGACGT 59.273 47.619 0.00 0.00 42.25 4.34
155 156 2.921121 CGCACAATGCTAAAGAGACGTA 59.079 45.455 0.00 0.00 42.25 3.57
156 157 3.366724 CGCACAATGCTAAAGAGACGTAA 59.633 43.478 0.00 0.00 42.25 3.18
157 158 4.638963 GCACAATGCTAAAGAGACGTAAC 58.361 43.478 0.00 0.00 40.96 2.50
158 159 4.151689 GCACAATGCTAAAGAGACGTAACA 59.848 41.667 0.00 0.00 40.96 2.41
159 160 5.609088 CACAATGCTAAAGAGACGTAACAC 58.391 41.667 0.00 0.00 0.00 3.32
160 161 5.176774 CACAATGCTAAAGAGACGTAACACA 59.823 40.000 0.00 0.00 0.00 3.72
161 162 5.756347 ACAATGCTAAAGAGACGTAACACAA 59.244 36.000 0.00 0.00 0.00 3.33
162 163 6.426937 ACAATGCTAAAGAGACGTAACACAAT 59.573 34.615 0.00 0.00 0.00 2.71
163 164 7.041372 ACAATGCTAAAGAGACGTAACACAATT 60.041 33.333 0.00 0.00 0.00 2.32
164 165 6.223138 TGCTAAAGAGACGTAACACAATTG 57.777 37.500 3.24 3.24 0.00 2.32
165 166 5.080068 GCTAAAGAGACGTAACACAATTGC 58.920 41.667 5.05 0.00 0.00 3.56
166 167 5.107065 GCTAAAGAGACGTAACACAATTGCT 60.107 40.000 5.05 0.00 0.00 3.91
167 168 4.992381 AAGAGACGTAACACAATTGCTC 57.008 40.909 5.05 1.44 0.00 4.26
168 169 3.990092 AGAGACGTAACACAATTGCTCA 58.010 40.909 5.05 0.00 0.00 4.26
169 170 4.377021 AGAGACGTAACACAATTGCTCAA 58.623 39.130 5.05 0.00 0.00 3.02
170 171 4.814234 AGAGACGTAACACAATTGCTCAAA 59.186 37.500 5.05 0.00 0.00 2.69
171 172 5.295787 AGAGACGTAACACAATTGCTCAAAA 59.704 36.000 5.05 0.00 0.00 2.44
172 173 5.510671 AGACGTAACACAATTGCTCAAAAG 58.489 37.500 5.05 0.00 0.00 2.27
173 174 4.606961 ACGTAACACAATTGCTCAAAAGG 58.393 39.130 5.05 0.00 0.00 3.11
174 175 3.980775 CGTAACACAATTGCTCAAAAGGG 59.019 43.478 5.05 0.00 0.00 3.95
175 176 2.531522 ACACAATTGCTCAAAAGGGC 57.468 45.000 5.05 0.00 0.00 5.19
176 177 1.761784 ACACAATTGCTCAAAAGGGCA 59.238 42.857 5.05 0.00 36.62 5.36
183 184 2.083774 TGCTCAAAAGGGCAAGATACG 58.916 47.619 0.00 0.00 35.40 3.06
184 185 2.290008 TGCTCAAAAGGGCAAGATACGA 60.290 45.455 0.00 0.00 35.40 3.43
185 186 2.747446 GCTCAAAAGGGCAAGATACGAA 59.253 45.455 0.00 0.00 0.00 3.85
186 187 3.190535 GCTCAAAAGGGCAAGATACGAAA 59.809 43.478 0.00 0.00 0.00 3.46
187 188 4.723248 CTCAAAAGGGCAAGATACGAAAC 58.277 43.478 0.00 0.00 0.00 2.78
188 189 4.394729 TCAAAAGGGCAAGATACGAAACT 58.605 39.130 0.00 0.00 0.00 2.66
189 190 4.825085 TCAAAAGGGCAAGATACGAAACTT 59.175 37.500 0.00 0.00 0.00 2.66
190 191 4.766404 AAAGGGCAAGATACGAAACTTG 57.234 40.909 12.80 12.80 44.05 3.16
191 192 3.418684 AGGGCAAGATACGAAACTTGT 57.581 42.857 16.24 1.50 43.41 3.16
192 193 3.074412 AGGGCAAGATACGAAACTTGTG 58.926 45.455 16.24 0.95 43.41 3.33
193 194 2.414161 GGGCAAGATACGAAACTTGTGC 60.414 50.000 16.24 8.08 43.41 4.57
194 195 2.225491 GGCAAGATACGAAACTTGTGCA 59.775 45.455 16.24 0.00 43.41 4.57
195 196 3.119849 GGCAAGATACGAAACTTGTGCAT 60.120 43.478 16.24 0.00 43.41 3.96
196 197 4.094294 GGCAAGATACGAAACTTGTGCATA 59.906 41.667 16.24 0.00 43.41 3.14
197 198 5.391523 GGCAAGATACGAAACTTGTGCATAA 60.392 40.000 16.24 0.00 43.41 1.90
198 199 5.508224 GCAAGATACGAAACTTGTGCATAAC 59.492 40.000 16.24 0.00 43.41 1.89
199 200 6.620733 GCAAGATACGAAACTTGTGCATAACT 60.621 38.462 16.24 0.00 43.41 2.24
200 201 7.298122 CAAGATACGAAACTTGTGCATAACTT 58.702 34.615 0.00 0.00 38.72 2.66
201 202 8.440059 CAAGATACGAAACTTGTGCATAACTTA 58.560 33.333 0.00 0.00 38.72 2.24
202 203 8.718102 AGATACGAAACTTGTGCATAACTTAT 57.282 30.769 0.00 0.00 0.00 1.73
203 204 9.162764 AGATACGAAACTTGTGCATAACTTATT 57.837 29.630 0.00 0.00 0.00 1.40
204 205 9.422196 GATACGAAACTTGTGCATAACTTATTC 57.578 33.333 0.00 0.00 0.00 1.75
205 206 6.608610 ACGAAACTTGTGCATAACTTATTCC 58.391 36.000 0.00 0.00 0.00 3.01
206 207 6.430000 ACGAAACTTGTGCATAACTTATTCCT 59.570 34.615 0.00 0.00 0.00 3.36
207 208 6.742718 CGAAACTTGTGCATAACTTATTCCTG 59.257 38.462 0.00 0.00 0.00 3.86
208 209 7.524717 AAACTTGTGCATAACTTATTCCTGT 57.475 32.000 0.00 0.00 0.00 4.00
209 210 6.743575 ACTTGTGCATAACTTATTCCTGTC 57.256 37.500 0.00 0.00 0.00 3.51
210 211 6.237901 ACTTGTGCATAACTTATTCCTGTCA 58.762 36.000 0.00 0.00 0.00 3.58
211 212 6.372659 ACTTGTGCATAACTTATTCCTGTCAG 59.627 38.462 0.00 0.00 0.00 3.51
212 213 5.804639 TGTGCATAACTTATTCCTGTCAGT 58.195 37.500 0.00 0.00 0.00 3.41
213 214 6.941857 TGTGCATAACTTATTCCTGTCAGTA 58.058 36.000 0.00 0.00 0.00 2.74
214 215 7.390823 TGTGCATAACTTATTCCTGTCAGTAA 58.609 34.615 0.00 0.00 0.00 2.24
215 216 7.880713 TGTGCATAACTTATTCCTGTCAGTAAA 59.119 33.333 0.00 0.00 0.00 2.01
216 217 8.391106 GTGCATAACTTATTCCTGTCAGTAAAG 58.609 37.037 0.00 0.02 0.00 1.85
217 218 8.100791 TGCATAACTTATTCCTGTCAGTAAAGT 58.899 33.333 0.00 0.60 0.00 2.66
218 219 9.595823 GCATAACTTATTCCTGTCAGTAAAGTA 57.404 33.333 0.00 0.00 0.00 2.24
223 224 9.531158 ACTTATTCCTGTCAGTAAAGTACTAGT 57.469 33.333 0.00 0.00 37.23 2.57
250 251 9.550406 TTTTTAGTTAGTAGTGTGCAATACTGT 57.450 29.630 18.75 8.64 41.59 3.55
251 252 9.550406 TTTTAGTTAGTAGTGTGCAATACTGTT 57.450 29.630 18.75 9.08 41.59 3.16
252 253 9.550406 TTTAGTTAGTAGTGTGCAATACTGTTT 57.450 29.630 18.75 8.81 41.59 2.83
255 256 9.204570 AGTTAGTAGTGTGCAATACTGTTTAAG 57.795 33.333 18.75 0.00 41.59 1.85
256 257 9.199982 GTTAGTAGTGTGCAATACTGTTTAAGA 57.800 33.333 18.75 0.00 41.59 2.10
257 258 9.767228 TTAGTAGTGTGCAATACTGTTTAAGAA 57.233 29.630 18.75 4.38 41.59 2.52
258 259 8.671384 AGTAGTGTGCAATACTGTTTAAGAAA 57.329 30.769 10.89 0.00 39.27 2.52
259 260 9.284968 AGTAGTGTGCAATACTGTTTAAGAAAT 57.715 29.630 10.89 0.00 39.27 2.17
260 261 9.329913 GTAGTGTGCAATACTGTTTAAGAAATG 57.670 33.333 13.54 0.00 39.27 2.32
261 262 6.863126 AGTGTGCAATACTGTTTAAGAAATGC 59.137 34.615 4.22 0.00 36.71 3.56
262 263 6.640499 GTGTGCAATACTGTTTAAGAAATGCA 59.360 34.615 0.00 0.00 38.07 3.96
263 264 7.329226 GTGTGCAATACTGTTTAAGAAATGCAT 59.671 33.333 0.00 0.00 40.40 3.96
264 265 7.328982 TGTGCAATACTGTTTAAGAAATGCATG 59.671 33.333 0.00 0.00 40.40 4.06
265 266 6.310956 TGCAATACTGTTTAAGAAATGCATGC 59.689 34.615 11.82 11.82 36.67 4.06
266 267 6.310956 GCAATACTGTTTAAGAAATGCATGCA 59.689 34.615 25.04 25.04 33.90 3.96
267 268 7.148606 GCAATACTGTTTAAGAAATGCATGCAA 60.149 33.333 26.68 8.49 33.90 4.08
268 269 8.875803 CAATACTGTTTAAGAAATGCATGCAAT 58.124 29.630 26.68 14.74 0.00 3.56
269 270 6.956299 ACTGTTTAAGAAATGCATGCAATC 57.044 33.333 26.68 24.17 0.00 2.67
270 271 6.694447 ACTGTTTAAGAAATGCATGCAATCT 58.306 32.000 26.68 25.94 0.00 2.40
271 272 6.588756 ACTGTTTAAGAAATGCATGCAATCTG 59.411 34.615 29.31 20.89 0.00 2.90
272 273 6.689554 TGTTTAAGAAATGCATGCAATCTGA 58.310 32.000 29.31 23.06 0.00 3.27
273 274 6.809689 TGTTTAAGAAATGCATGCAATCTGAG 59.190 34.615 29.31 0.00 0.00 3.35
274 275 6.762702 TTAAGAAATGCATGCAATCTGAGA 57.237 33.333 29.31 19.20 0.00 3.27
275 276 4.634184 AGAAATGCATGCAATCTGAGAC 57.366 40.909 28.53 14.38 0.00 3.36
276 277 4.270834 AGAAATGCATGCAATCTGAGACT 58.729 39.130 28.53 15.93 0.00 3.24
277 278 4.705507 AGAAATGCATGCAATCTGAGACTT 59.294 37.500 28.53 13.46 0.00 3.01
278 279 4.634184 AATGCATGCAATCTGAGACTTC 57.366 40.909 26.68 0.00 0.00 3.01
279 280 3.062122 TGCATGCAATCTGAGACTTCA 57.938 42.857 20.30 0.00 0.00 3.02
294 295 7.869016 TGAGACTTCAGAAAACGTATACTTG 57.131 36.000 0.56 0.00 0.00 3.16
295 296 7.654568 TGAGACTTCAGAAAACGTATACTTGA 58.345 34.615 0.56 0.00 0.00 3.02
296 297 7.808381 TGAGACTTCAGAAAACGTATACTTGAG 59.192 37.037 0.56 0.00 0.00 3.02
297 298 7.659186 AGACTTCAGAAAACGTATACTTGAGT 58.341 34.615 0.56 0.00 0.00 3.41
298 299 7.808856 AGACTTCAGAAAACGTATACTTGAGTC 59.191 37.037 0.56 4.71 0.00 3.36
299 300 7.431249 ACTTCAGAAAACGTATACTTGAGTCA 58.569 34.615 0.56 0.00 0.00 3.41
300 301 7.924412 ACTTCAGAAAACGTATACTTGAGTCAA 59.076 33.333 5.25 5.25 0.00 3.18
301 302 8.651391 TTCAGAAAACGTATACTTGAGTCAAA 57.349 30.769 7.06 0.00 0.00 2.69
302 303 8.068893 TCAGAAAACGTATACTTGAGTCAAAC 57.931 34.615 7.06 1.25 0.00 2.93
303 304 7.924412 TCAGAAAACGTATACTTGAGTCAAACT 59.076 33.333 7.06 0.00 0.00 2.66
304 305 9.188588 CAGAAAACGTATACTTGAGTCAAACTA 57.811 33.333 7.06 0.00 0.00 2.24
305 306 9.189723 AGAAAACGTATACTTGAGTCAAACTAC 57.810 33.333 7.06 7.79 0.00 2.73
306 307 8.876275 AAAACGTATACTTGAGTCAAACTACA 57.124 30.769 7.06 0.00 0.00 2.74
307 308 7.864307 AACGTATACTTGAGTCAAACTACAC 57.136 36.000 7.06 0.00 0.00 2.90
308 309 7.211966 ACGTATACTTGAGTCAAACTACACT 57.788 36.000 7.06 0.00 0.00 3.55
309 310 8.327941 ACGTATACTTGAGTCAAACTACACTA 57.672 34.615 7.06 0.00 0.00 2.74
310 311 8.449397 ACGTATACTTGAGTCAAACTACACTAG 58.551 37.037 7.06 0.00 0.00 2.57
311 312 8.663025 CGTATACTTGAGTCAAACTACACTAGA 58.337 37.037 7.06 0.00 0.00 2.43
333 334 9.915629 CTAGAATAGTCAGTGAAAAACTACACT 57.084 33.333 0.00 0.00 39.66 3.55
356 357 9.846248 CACTGAATTATAAAGGTCTTTTCCTTG 57.154 33.333 1.04 0.00 45.79 3.61
357 358 9.807921 ACTGAATTATAAAGGTCTTTTCCTTGA 57.192 29.630 1.04 0.00 45.79 3.02
366 367 7.767250 AAGGTCTTTTCCTTGAAAGAATAGG 57.233 36.000 1.99 0.00 44.63 2.57
367 368 6.853490 AGGTCTTTTCCTTGAAAGAATAGGT 58.147 36.000 1.99 0.00 44.63 3.08
368 369 7.298374 AGGTCTTTTCCTTGAAAGAATAGGTT 58.702 34.615 1.99 0.00 44.63 3.50
369 370 7.231519 AGGTCTTTTCCTTGAAAGAATAGGTTG 59.768 37.037 1.99 0.00 44.63 3.77
370 371 7.230712 GGTCTTTTCCTTGAAAGAATAGGTTGA 59.769 37.037 1.99 0.00 44.63 3.18
371 372 8.293157 GTCTTTTCCTTGAAAGAATAGGTTGAG 58.707 37.037 1.99 0.00 44.63 3.02
372 373 8.217799 TCTTTTCCTTGAAAGAATAGGTTGAGA 58.782 33.333 0.00 0.00 41.35 3.27
373 374 8.760980 TTTTCCTTGAAAGAATAGGTTGAGAA 57.239 30.769 0.00 0.00 32.93 2.87
374 375 8.760980 TTTCCTTGAAAGAATAGGTTGAGAAA 57.239 30.769 0.00 0.00 0.00 2.52
375 376 7.745620 TCCTTGAAAGAATAGGTTGAGAAAC 57.254 36.000 0.00 0.00 0.00 2.78
376 377 7.287061 TCCTTGAAAGAATAGGTTGAGAAACA 58.713 34.615 0.00 0.00 0.00 2.83
377 378 7.777910 TCCTTGAAAGAATAGGTTGAGAAACAA 59.222 33.333 0.00 0.00 36.02 2.83
378 379 8.413229 CCTTGAAAGAATAGGTTGAGAAACAAA 58.587 33.333 0.00 0.00 40.36 2.83
379 380 9.801873 CTTGAAAGAATAGGTTGAGAAACAAAA 57.198 29.630 0.00 0.00 40.36 2.44
380 381 9.581099 TTGAAAGAATAGGTTGAGAAACAAAAC 57.419 29.630 0.00 0.00 40.36 2.43
381 382 7.913297 TGAAAGAATAGGTTGAGAAACAAAACG 59.087 33.333 0.00 0.00 40.36 3.60
382 383 6.937436 AGAATAGGTTGAGAAACAAAACGT 57.063 33.333 0.00 0.00 40.36 3.99
383 384 6.725246 AGAATAGGTTGAGAAACAAAACGTG 58.275 36.000 0.00 0.00 40.36 4.49
384 385 6.317893 AGAATAGGTTGAGAAACAAAACGTGT 59.682 34.615 0.00 0.00 44.64 4.49
385 386 4.351131 AGGTTGAGAAACAAAACGTGTC 57.649 40.909 0.00 0.00 40.60 3.67
386 387 3.095738 GGTTGAGAAACAAAACGTGTCG 58.904 45.455 0.00 0.00 40.60 4.35
387 388 3.181518 GGTTGAGAAACAAAACGTGTCGA 60.182 43.478 0.00 0.00 40.60 4.20
388 389 3.644805 TGAGAAACAAAACGTGTCGAC 57.355 42.857 9.11 9.11 40.60 4.20
389 390 3.255725 TGAGAAACAAAACGTGTCGACT 58.744 40.909 17.92 0.00 40.60 4.18
390 391 3.680937 TGAGAAACAAAACGTGTCGACTT 59.319 39.130 17.92 0.00 40.60 3.01
391 392 4.152759 TGAGAAACAAAACGTGTCGACTTT 59.847 37.500 17.92 6.28 40.60 2.66
392 393 4.644954 AGAAACAAAACGTGTCGACTTTC 58.355 39.130 17.92 14.51 40.60 2.62
393 394 4.390909 AGAAACAAAACGTGTCGACTTTCT 59.609 37.500 17.92 16.40 40.60 2.52
394 395 5.577945 AGAAACAAAACGTGTCGACTTTCTA 59.422 36.000 17.92 0.00 40.60 2.10
395 396 5.978934 AACAAAACGTGTCGACTTTCTAT 57.021 34.783 17.92 0.00 40.60 1.98
396 397 5.978934 ACAAAACGTGTCGACTTTCTATT 57.021 34.783 17.92 2.41 34.38 1.73
397 398 5.970879 ACAAAACGTGTCGACTTTCTATTC 58.029 37.500 17.92 0.00 34.38 1.75
398 399 5.050567 ACAAAACGTGTCGACTTTCTATTCC 60.051 40.000 17.92 0.00 34.38 3.01
399 400 3.928727 ACGTGTCGACTTTCTATTCCA 57.071 42.857 17.92 0.00 0.00 3.53
400 401 4.247267 ACGTGTCGACTTTCTATTCCAA 57.753 40.909 17.92 0.00 0.00 3.53
401 402 4.235360 ACGTGTCGACTTTCTATTCCAAG 58.765 43.478 17.92 0.00 0.00 3.61
402 403 4.235360 CGTGTCGACTTTCTATTCCAAGT 58.765 43.478 17.92 0.00 35.88 3.16
403 404 5.048504 ACGTGTCGACTTTCTATTCCAAGTA 60.049 40.000 17.92 0.00 33.22 2.24
404 405 6.034591 CGTGTCGACTTTCTATTCCAAGTAT 58.965 40.000 17.92 0.00 33.22 2.12
405 406 6.020599 CGTGTCGACTTTCTATTCCAAGTATG 60.021 42.308 17.92 0.00 33.22 2.39
406 407 5.810587 TGTCGACTTTCTATTCCAAGTATGC 59.189 40.000 17.92 0.00 33.22 3.14
407 408 6.043411 GTCGACTTTCTATTCCAAGTATGCT 58.957 40.000 8.70 0.00 33.22 3.79
408 409 7.147966 TGTCGACTTTCTATTCCAAGTATGCTA 60.148 37.037 17.92 0.00 33.22 3.49
409 410 7.167801 GTCGACTTTCTATTCCAAGTATGCTAC 59.832 40.741 8.70 0.00 33.22 3.58
410 411 6.978659 CGACTTTCTATTCCAAGTATGCTACA 59.021 38.462 0.00 0.00 33.22 2.74
486 489 4.117661 GGGAGAGAGCGCGTTCGT 62.118 66.667 17.44 8.93 38.14 3.85
505 508 2.041265 AGGATTGGCCTCCCTCGT 59.959 61.111 3.32 0.00 46.97 4.18
509 512 0.181350 GATTGGCCTCCCTCGTGAAT 59.819 55.000 3.32 0.00 0.00 2.57
510 513 0.107017 ATTGGCCTCCCTCGTGAATG 60.107 55.000 3.32 0.00 0.00 2.67
634 638 3.441922 GCATCCCTTCACCTCTTCTTTTC 59.558 47.826 0.00 0.00 0.00 2.29
653 659 1.831652 CTTTCCCGACAGCTCCAGGT 61.832 60.000 0.00 0.00 0.00 4.00
682 698 4.177165 TGGCTGTTGTAATCTGCAAATG 57.823 40.909 0.00 0.00 0.00 2.32
703 720 8.800972 CAAATGAATTATGTGTCCTTCAAATCG 58.199 33.333 0.00 0.00 31.92 3.34
767 787 3.126858 CGTCCCAAACCAATCATGTACAG 59.873 47.826 0.33 0.00 0.00 2.74
788 2496 5.570589 ACAGTACTAGACATAAAAACGACGC 59.429 40.000 0.00 0.00 0.00 5.19
804 2512 3.122971 GCGTTAACCGGGGACTGC 61.123 66.667 6.32 0.00 36.94 4.40
899 2607 0.108567 GAGGAGACGTCCAAGCTTCC 60.109 60.000 13.01 11.52 46.80 3.46
965 2673 9.850628 CATGTTCAGAATAAATCAAACAGATGT 57.149 29.630 0.00 0.00 38.53 3.06
1031 2750 6.899393 AACAAACTGATATGAAGCAAGGAA 57.101 33.333 0.00 0.00 0.00 3.36
1059 2778 1.359818 GGGGGAGCTCTAGCCTATACT 59.640 57.143 14.64 0.00 43.38 2.12
1096 2815 4.357279 GAGCAAGCTGCCACCCCT 62.357 66.667 0.00 0.00 46.52 4.79
1099 2818 3.081554 CAAGCTGCCACCCCTAGT 58.918 61.111 0.00 0.00 0.00 2.57
1102 2821 3.798511 GCTGCCACCCCTAGTCCC 61.799 72.222 0.00 0.00 0.00 4.46
1219 2938 2.876645 GCGACGACGAAGGCAGAG 60.877 66.667 12.29 0.00 42.66 3.35
1359 3079 2.097160 CGCACGCTTGATGCTGTC 59.903 61.111 0.00 0.00 41.10 3.51
1520 3240 1.612676 TTGCTGCAGCTTCTTCATGT 58.387 45.000 36.61 0.00 42.66 3.21
1546 3266 1.171308 GCTGCTTCTTCTGCCATGAA 58.829 50.000 0.00 0.00 0.00 2.57
1603 3323 1.228657 GCAACAAGGACGAGTGACCC 61.229 60.000 0.00 0.00 0.00 4.46
1655 3375 5.183140 CCGAAGATAAACCTTGTGGATTTGT 59.817 40.000 0.00 0.00 37.04 2.83
1757 3496 0.329261 TTGGTCTTCCCCTGCATCTG 59.671 55.000 0.00 0.00 0.00 2.90
1849 3594 4.212847 GTGGTATTCAGCAGATGCATACAG 59.787 45.833 10.11 0.00 45.16 2.74
1853 3598 1.478105 TCAGCAGATGCATACAGACGT 59.522 47.619 7.68 0.00 45.16 4.34
1856 3601 1.594862 GCAGATGCATACAGACGTTCC 59.405 52.381 0.00 0.00 41.59 3.62
1859 3604 3.308053 CAGATGCATACAGACGTTCCTTG 59.692 47.826 0.00 0.00 0.00 3.61
1864 3609 3.250040 GCATACAGACGTTCCTTGTTGTT 59.750 43.478 0.00 0.00 0.00 2.83
1869 3614 3.078837 AGACGTTCCTTGTTGTTGTTGT 58.921 40.909 0.00 0.00 0.00 3.32
1887 3632 8.462811 TGTTGTTGTTGTTGTACAATATCAGTT 58.537 29.630 12.26 0.00 40.59 3.16
1930 3736 4.880120 TCTCCATTTCTGCATCATCTCAAC 59.120 41.667 0.00 0.00 0.00 3.18
1986 3792 2.658268 GCCCAACGTGCTTGCAAC 60.658 61.111 0.00 0.00 0.00 4.17
2209 4015 6.841443 TGCATGATTTTCACAACGAAATTT 57.159 29.167 0.00 0.00 43.12 1.82
2324 4130 0.179000 CCACAAAGGCCGATCTAGCT 59.821 55.000 0.00 0.00 0.00 3.32
2453 4259 3.373565 GGCCGGGCTTGACAAAGG 61.374 66.667 22.87 0.00 33.68 3.11
2475 4281 2.171003 CGAAGGAAAAATCCCAAGCCT 58.829 47.619 0.00 0.00 0.00 4.58
2481 4287 0.615827 AAAATCCCAAGCCTGAGCCC 60.616 55.000 0.00 0.00 41.25 5.19
2612 4419 1.134818 GGGCTTTATTTGGGCTTTCGG 60.135 52.381 0.00 0.00 0.00 4.30
2614 4421 1.739035 GCTTTATTTGGGCTTTCGGGC 60.739 52.381 0.00 0.00 40.05 6.13
2640 4447 0.756294 TCGGGTGAGAAAGTGAAGCA 59.244 50.000 0.00 0.00 0.00 3.91
2650 4457 0.403271 AAGTGAAGCATGAGCCTGGT 59.597 50.000 0.00 0.00 43.56 4.00
2654 4461 2.244117 GAAGCATGAGCCTGGTCCGA 62.244 60.000 0.00 0.00 43.56 4.55
2853 4660 3.047807 GCTGCCTGCCCATAGTCCA 62.048 63.158 0.00 0.00 35.15 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.501170 TCTACCTGGGAGAGCATAGCT 59.499 52.381 3.94 0.00 43.88 3.32
7 8 1.892474 CTCTACCTGGGAGAGCATAGC 59.108 57.143 22.64 0.00 34.41 2.97
8 9 3.153919 GTCTCTACCTGGGAGAGCATAG 58.846 54.545 28.14 8.34 40.32 2.23
9 10 2.786445 AGTCTCTACCTGGGAGAGCATA 59.214 50.000 28.14 11.10 40.32 3.14
10 11 1.573376 AGTCTCTACCTGGGAGAGCAT 59.427 52.381 28.14 17.06 40.32 3.79
11 12 1.003646 AGTCTCTACCTGGGAGAGCA 58.996 55.000 28.14 15.70 40.32 4.26
12 13 1.687563 GAGTCTCTACCTGGGAGAGC 58.312 60.000 28.14 22.25 40.32 4.09
13 14 1.961793 CGAGTCTCTACCTGGGAGAG 58.038 60.000 27.25 27.25 40.02 3.20
14 15 0.107116 GCGAGTCTCTACCTGGGAGA 60.107 60.000 8.68 8.68 37.48 3.71
15 16 1.440938 CGCGAGTCTCTACCTGGGAG 61.441 65.000 0.00 0.00 0.00 4.30
16 17 1.451567 CGCGAGTCTCTACCTGGGA 60.452 63.158 0.00 0.00 0.00 4.37
17 18 1.749638 ACGCGAGTCTCTACCTGGG 60.750 63.158 15.93 0.00 44.19 4.45
18 19 3.906718 ACGCGAGTCTCTACCTGG 58.093 61.111 15.93 0.00 44.19 4.45
19 20 1.743091 AGGTACGCGAGTCTCTACCTG 60.743 57.143 19.52 0.00 45.15 4.00
29 30 1.585521 CGTTGGCTAGGTACGCGAG 60.586 63.158 15.93 0.00 0.00 5.03
30 31 2.334946 ACGTTGGCTAGGTACGCGA 61.335 57.895 15.93 0.00 38.77 5.87
31 32 2.156446 CACGTTGGCTAGGTACGCG 61.156 63.158 3.53 3.53 38.77 6.01
32 33 1.808390 CCACGTTGGCTAGGTACGC 60.808 63.158 0.00 0.00 38.77 4.42
33 34 0.457337 GACCACGTTGGCTAGGTACG 60.457 60.000 4.23 0.00 42.67 3.67
34 35 0.893447 AGACCACGTTGGCTAGGTAC 59.107 55.000 0.00 0.00 42.67 3.34
35 36 2.094675 GTAGACCACGTTGGCTAGGTA 58.905 52.381 1.70 0.00 42.67 3.08
36 37 0.893447 GTAGACCACGTTGGCTAGGT 59.107 55.000 1.70 0.00 42.67 3.08
37 38 0.179145 CGTAGACCACGTTGGCTAGG 60.179 60.000 1.70 5.10 45.82 3.02
38 39 3.324170 CGTAGACCACGTTGGCTAG 57.676 57.895 1.70 0.00 45.82 3.42
47 48 2.538512 AAACACTTCCCGTAGACCAC 57.461 50.000 0.00 0.00 0.00 4.16
48 49 2.435069 TCAAAACACTTCCCGTAGACCA 59.565 45.455 0.00 0.00 0.00 4.02
49 50 3.116079 TCAAAACACTTCCCGTAGACC 57.884 47.619 0.00 0.00 0.00 3.85
50 51 5.930569 ACTAATCAAAACACTTCCCGTAGAC 59.069 40.000 0.00 0.00 0.00 2.59
51 52 6.105397 ACTAATCAAAACACTTCCCGTAGA 57.895 37.500 0.00 0.00 0.00 2.59
52 53 7.762615 TGATACTAATCAAAACACTTCCCGTAG 59.237 37.037 0.00 0.00 39.20 3.51
53 54 7.613585 TGATACTAATCAAAACACTTCCCGTA 58.386 34.615 0.00 0.00 39.20 4.02
54 55 6.469410 TGATACTAATCAAAACACTTCCCGT 58.531 36.000 0.00 0.00 39.20 5.28
55 56 6.037172 CCTGATACTAATCAAAACACTTCCCG 59.963 42.308 0.00 0.00 41.57 5.14
56 57 6.884836 ACCTGATACTAATCAAAACACTTCCC 59.115 38.462 0.00 0.00 41.57 3.97
57 58 7.923414 ACCTGATACTAATCAAAACACTTCC 57.077 36.000 0.00 0.00 41.57 3.46
58 59 8.169268 CGAACCTGATACTAATCAAAACACTTC 58.831 37.037 0.00 0.00 41.57 3.01
59 60 7.360946 GCGAACCTGATACTAATCAAAACACTT 60.361 37.037 0.00 0.00 41.57 3.16
60 61 6.092259 GCGAACCTGATACTAATCAAAACACT 59.908 38.462 0.00 0.00 41.57 3.55
61 62 6.092259 AGCGAACCTGATACTAATCAAAACAC 59.908 38.462 0.00 0.00 41.57 3.32
62 63 6.170506 AGCGAACCTGATACTAATCAAAACA 58.829 36.000 0.00 0.00 41.57 2.83
63 64 6.663944 AGCGAACCTGATACTAATCAAAAC 57.336 37.500 0.00 0.00 41.57 2.43
64 65 6.479001 GCTAGCGAACCTGATACTAATCAAAA 59.521 38.462 0.00 0.00 41.57 2.44
65 66 5.983720 GCTAGCGAACCTGATACTAATCAAA 59.016 40.000 0.00 0.00 41.57 2.69
66 67 5.302059 AGCTAGCGAACCTGATACTAATCAA 59.698 40.000 9.55 0.00 41.57 2.57
67 68 4.827835 AGCTAGCGAACCTGATACTAATCA 59.172 41.667 9.55 0.00 39.87 2.57
68 69 5.379732 AGCTAGCGAACCTGATACTAATC 57.620 43.478 9.55 0.00 0.00 1.75
69 70 5.793030 AAGCTAGCGAACCTGATACTAAT 57.207 39.130 9.55 0.00 0.00 1.73
70 71 5.593679 AAAGCTAGCGAACCTGATACTAA 57.406 39.130 9.55 0.00 0.00 2.24
71 72 5.593679 AAAAGCTAGCGAACCTGATACTA 57.406 39.130 9.55 0.00 0.00 1.82
72 73 4.473477 AAAAGCTAGCGAACCTGATACT 57.527 40.909 9.55 0.00 0.00 2.12
73 74 8.535690 AATATAAAAGCTAGCGAACCTGATAC 57.464 34.615 9.55 0.00 0.00 2.24
74 75 8.364894 TGAATATAAAAGCTAGCGAACCTGATA 58.635 33.333 9.55 3.00 0.00 2.15
75 76 7.217200 TGAATATAAAAGCTAGCGAACCTGAT 58.783 34.615 9.55 0.79 0.00 2.90
76 77 6.578944 TGAATATAAAAGCTAGCGAACCTGA 58.421 36.000 9.55 0.00 0.00 3.86
77 78 6.844696 TGAATATAAAAGCTAGCGAACCTG 57.155 37.500 9.55 0.00 0.00 4.00
78 79 9.726438 ATTATGAATATAAAAGCTAGCGAACCT 57.274 29.630 9.55 0.00 32.80 3.50
102 103 9.131791 AGCCTTTTCCGTGAATAATACATTATT 57.868 29.630 6.87 6.87 43.54 1.40
103 104 8.691661 AGCCTTTTCCGTGAATAATACATTAT 57.308 30.769 0.00 0.00 34.59 1.28
104 105 8.402472 CAAGCCTTTTCCGTGAATAATACATTA 58.598 33.333 0.00 0.00 0.00 1.90
105 106 7.093945 ACAAGCCTTTTCCGTGAATAATACATT 60.094 33.333 0.00 0.00 0.00 2.71
106 107 6.377146 ACAAGCCTTTTCCGTGAATAATACAT 59.623 34.615 0.00 0.00 0.00 2.29
107 108 5.708230 ACAAGCCTTTTCCGTGAATAATACA 59.292 36.000 0.00 0.00 0.00 2.29
108 109 6.027749 CACAAGCCTTTTCCGTGAATAATAC 58.972 40.000 0.00 0.00 0.00 1.89
109 110 5.708230 ACACAAGCCTTTTCCGTGAATAATA 59.292 36.000 0.21 0.00 0.00 0.98
110 111 4.522789 ACACAAGCCTTTTCCGTGAATAAT 59.477 37.500 0.21 0.00 0.00 1.28
111 112 3.886505 ACACAAGCCTTTTCCGTGAATAA 59.113 39.130 0.21 0.00 0.00 1.40
112 113 3.482436 ACACAAGCCTTTTCCGTGAATA 58.518 40.909 0.21 0.00 0.00 1.75
113 114 2.293399 GACACAAGCCTTTTCCGTGAAT 59.707 45.455 0.21 0.00 0.00 2.57
114 115 1.673920 GACACAAGCCTTTTCCGTGAA 59.326 47.619 0.21 0.00 0.00 3.18
115 116 1.305201 GACACAAGCCTTTTCCGTGA 58.695 50.000 0.21 0.00 0.00 4.35
116 117 0.041312 CGACACAAGCCTTTTCCGTG 60.041 55.000 0.00 0.00 0.00 4.94
117 118 1.782028 GCGACACAAGCCTTTTCCGT 61.782 55.000 0.00 0.00 0.00 4.69
118 119 1.082104 GCGACACAAGCCTTTTCCG 60.082 57.895 0.00 0.00 0.00 4.30
119 120 0.317854 GTGCGACACAAGCCTTTTCC 60.318 55.000 5.30 0.00 34.08 3.13
120 121 0.380378 TGTGCGACACAAGCCTTTTC 59.620 50.000 9.71 0.00 41.69 2.29
121 122 2.487918 TGTGCGACACAAGCCTTTT 58.512 47.368 9.71 0.00 41.69 2.27
122 123 4.234019 TGTGCGACACAAGCCTTT 57.766 50.000 9.71 0.00 41.69 3.11
135 136 4.151689 TGTTACGTCTCTTTAGCATTGTGC 59.848 41.667 0.00 0.00 45.46 4.57
136 137 5.176774 TGTGTTACGTCTCTTTAGCATTGTG 59.823 40.000 0.00 0.00 0.00 3.33
137 138 5.294356 TGTGTTACGTCTCTTTAGCATTGT 58.706 37.500 0.00 0.00 0.00 2.71
138 139 5.839262 TGTGTTACGTCTCTTTAGCATTG 57.161 39.130 0.00 0.00 0.00 2.82
139 140 7.298122 CAATTGTGTTACGTCTCTTTAGCATT 58.702 34.615 0.00 0.00 0.00 3.56
140 141 6.620733 GCAATTGTGTTACGTCTCTTTAGCAT 60.621 38.462 7.40 0.00 0.00 3.79
141 142 5.333798 GCAATTGTGTTACGTCTCTTTAGCA 60.334 40.000 7.40 0.00 0.00 3.49
142 143 5.080068 GCAATTGTGTTACGTCTCTTTAGC 58.920 41.667 7.40 0.00 0.00 3.09
143 144 6.145534 TGAGCAATTGTGTTACGTCTCTTTAG 59.854 38.462 7.40 0.00 0.00 1.85
144 145 5.986741 TGAGCAATTGTGTTACGTCTCTTTA 59.013 36.000 7.40 0.00 0.00 1.85
145 146 4.814234 TGAGCAATTGTGTTACGTCTCTTT 59.186 37.500 7.40 0.00 0.00 2.52
146 147 4.377021 TGAGCAATTGTGTTACGTCTCTT 58.623 39.130 7.40 0.00 0.00 2.85
147 148 3.990092 TGAGCAATTGTGTTACGTCTCT 58.010 40.909 7.40 0.00 0.00 3.10
148 149 4.725556 TTGAGCAATTGTGTTACGTCTC 57.274 40.909 7.40 3.17 0.00 3.36
149 150 5.493133 TTTTGAGCAATTGTGTTACGTCT 57.507 34.783 7.40 0.00 0.00 4.18
150 151 4.675114 CCTTTTGAGCAATTGTGTTACGTC 59.325 41.667 7.40 0.00 0.00 4.34
151 152 4.499019 CCCTTTTGAGCAATTGTGTTACGT 60.499 41.667 7.40 0.00 0.00 3.57
152 153 3.980775 CCCTTTTGAGCAATTGTGTTACG 59.019 43.478 7.40 0.00 0.00 3.18
153 154 3.740832 GCCCTTTTGAGCAATTGTGTTAC 59.259 43.478 7.40 0.00 0.00 2.50
154 155 3.386078 TGCCCTTTTGAGCAATTGTGTTA 59.614 39.130 7.40 0.00 35.69 2.41
155 156 2.170187 TGCCCTTTTGAGCAATTGTGTT 59.830 40.909 7.40 0.00 35.69 3.32
156 157 1.761784 TGCCCTTTTGAGCAATTGTGT 59.238 42.857 7.40 0.00 35.69 3.72
157 158 2.529780 TGCCCTTTTGAGCAATTGTG 57.470 45.000 7.40 0.00 35.69 3.33
162 163 2.487762 CGTATCTTGCCCTTTTGAGCAA 59.512 45.455 0.00 0.00 46.26 3.91
163 164 2.083774 CGTATCTTGCCCTTTTGAGCA 58.916 47.619 0.00 0.00 37.18 4.26
164 165 2.356135 TCGTATCTTGCCCTTTTGAGC 58.644 47.619 0.00 0.00 0.00 4.26
165 166 4.455877 AGTTTCGTATCTTGCCCTTTTGAG 59.544 41.667 0.00 0.00 0.00 3.02
166 167 4.394729 AGTTTCGTATCTTGCCCTTTTGA 58.605 39.130 0.00 0.00 0.00 2.69
167 168 4.766404 AGTTTCGTATCTTGCCCTTTTG 57.234 40.909 0.00 0.00 0.00 2.44
168 169 4.583073 ACAAGTTTCGTATCTTGCCCTTTT 59.417 37.500 11.44 0.00 43.05 2.27
169 170 4.023193 CACAAGTTTCGTATCTTGCCCTTT 60.023 41.667 11.44 0.00 43.05 3.11
170 171 3.502211 CACAAGTTTCGTATCTTGCCCTT 59.498 43.478 11.44 0.00 43.05 3.95
171 172 3.074412 CACAAGTTTCGTATCTTGCCCT 58.926 45.455 11.44 0.00 43.05 5.19
172 173 2.414161 GCACAAGTTTCGTATCTTGCCC 60.414 50.000 11.44 1.77 43.05 5.36
173 174 2.225491 TGCACAAGTTTCGTATCTTGCC 59.775 45.455 11.44 5.42 43.05 4.52
174 175 3.536158 TGCACAAGTTTCGTATCTTGC 57.464 42.857 11.44 2.37 43.05 4.01
175 176 6.831769 AGTTATGCACAAGTTTCGTATCTTG 58.168 36.000 10.30 10.30 44.29 3.02
176 177 7.435068 AAGTTATGCACAAGTTTCGTATCTT 57.565 32.000 0.00 0.00 0.00 2.40
177 178 8.718102 ATAAGTTATGCACAAGTTTCGTATCT 57.282 30.769 2.60 0.00 0.00 1.98
178 179 9.422196 GAATAAGTTATGCACAAGTTTCGTATC 57.578 33.333 2.60 0.00 0.00 2.24
179 180 8.395633 GGAATAAGTTATGCACAAGTTTCGTAT 58.604 33.333 2.60 0.00 0.00 3.06
180 181 7.604927 AGGAATAAGTTATGCACAAGTTTCGTA 59.395 33.333 2.60 0.00 0.00 3.43
181 182 6.430000 AGGAATAAGTTATGCACAAGTTTCGT 59.570 34.615 2.60 0.00 0.00 3.85
182 183 6.742718 CAGGAATAAGTTATGCACAAGTTTCG 59.257 38.462 2.60 0.00 0.00 3.46
183 184 7.593825 ACAGGAATAAGTTATGCACAAGTTTC 58.406 34.615 2.60 0.00 0.00 2.78
184 185 7.230510 TGACAGGAATAAGTTATGCACAAGTTT 59.769 33.333 2.60 0.00 0.00 2.66
185 186 6.714810 TGACAGGAATAAGTTATGCACAAGTT 59.285 34.615 2.88 2.88 0.00 2.66
186 187 6.237901 TGACAGGAATAAGTTATGCACAAGT 58.762 36.000 3.20 0.00 0.00 3.16
187 188 6.372659 ACTGACAGGAATAAGTTATGCACAAG 59.627 38.462 7.51 0.00 0.00 3.16
188 189 6.237901 ACTGACAGGAATAAGTTATGCACAA 58.762 36.000 7.51 0.00 0.00 3.33
189 190 5.804639 ACTGACAGGAATAAGTTATGCACA 58.195 37.500 7.51 0.00 0.00 4.57
190 191 7.843490 TTACTGACAGGAATAAGTTATGCAC 57.157 36.000 7.51 0.00 0.00 4.57
191 192 8.100791 ACTTTACTGACAGGAATAAGTTATGCA 58.899 33.333 7.51 0.00 0.00 3.96
192 193 8.494016 ACTTTACTGACAGGAATAAGTTATGC 57.506 34.615 7.51 0.00 0.00 3.14
197 198 9.531158 ACTAGTACTTTACTGACAGGAATAAGT 57.469 33.333 7.51 8.55 39.81 2.24
224 225 9.550406 ACAGTATTGCACACTACTAACTAAAAA 57.450 29.630 0.00 0.00 0.00 1.94
225 226 9.550406 AACAGTATTGCACACTACTAACTAAAA 57.450 29.630 0.00 0.00 0.00 1.52
226 227 9.550406 AAACAGTATTGCACACTACTAACTAAA 57.450 29.630 0.00 0.00 0.00 1.85
229 230 9.204570 CTTAAACAGTATTGCACACTACTAACT 57.795 33.333 0.00 0.00 0.00 2.24
230 231 9.199982 TCTTAAACAGTATTGCACACTACTAAC 57.800 33.333 0.00 0.00 0.00 2.34
231 232 9.767228 TTCTTAAACAGTATTGCACACTACTAA 57.233 29.630 0.00 0.00 0.00 2.24
232 233 9.767228 TTTCTTAAACAGTATTGCACACTACTA 57.233 29.630 0.00 0.00 0.00 1.82
233 234 8.671384 TTTCTTAAACAGTATTGCACACTACT 57.329 30.769 0.00 0.00 0.00 2.57
234 235 9.329913 CATTTCTTAAACAGTATTGCACACTAC 57.670 33.333 0.00 0.00 0.00 2.73
235 236 8.020819 GCATTTCTTAAACAGTATTGCACACTA 58.979 33.333 0.00 0.00 32.33 2.74
236 237 6.863126 GCATTTCTTAAACAGTATTGCACACT 59.137 34.615 0.00 0.00 32.33 3.55
237 238 6.640499 TGCATTTCTTAAACAGTATTGCACAC 59.360 34.615 0.00 0.00 35.46 3.82
238 239 6.743110 TGCATTTCTTAAACAGTATTGCACA 58.257 32.000 0.00 0.00 35.46 4.57
239 240 7.669098 CATGCATTTCTTAAACAGTATTGCAC 58.331 34.615 0.00 0.00 40.10 4.57
240 241 6.310956 GCATGCATTTCTTAAACAGTATTGCA 59.689 34.615 14.21 0.00 40.96 4.08
241 242 6.310956 TGCATGCATTTCTTAAACAGTATTGC 59.689 34.615 18.46 0.00 32.55 3.56
242 243 7.815398 TGCATGCATTTCTTAAACAGTATTG 57.185 32.000 18.46 0.00 0.00 1.90
243 244 9.090692 GATTGCATGCATTTCTTAAACAGTATT 57.909 29.630 23.37 0.00 0.00 1.89
244 245 8.472413 AGATTGCATGCATTTCTTAAACAGTAT 58.528 29.630 23.37 6.31 0.00 2.12
245 246 7.756272 CAGATTGCATGCATTTCTTAAACAGTA 59.244 33.333 23.37 0.61 0.00 2.74
246 247 6.588756 CAGATTGCATGCATTTCTTAAACAGT 59.411 34.615 23.37 0.76 0.00 3.55
247 248 6.809689 TCAGATTGCATGCATTTCTTAAACAG 59.190 34.615 23.37 12.92 0.00 3.16
248 249 6.689554 TCAGATTGCATGCATTTCTTAAACA 58.310 32.000 23.37 1.97 0.00 2.83
249 250 7.008992 GTCTCAGATTGCATGCATTTCTTAAAC 59.991 37.037 23.37 17.18 0.00 2.01
250 251 7.031372 GTCTCAGATTGCATGCATTTCTTAAA 58.969 34.615 23.37 12.61 0.00 1.52
251 252 6.376299 AGTCTCAGATTGCATGCATTTCTTAA 59.624 34.615 23.37 14.75 0.00 1.85
252 253 5.884232 AGTCTCAGATTGCATGCATTTCTTA 59.116 36.000 23.37 16.21 0.00 2.10
253 254 4.705507 AGTCTCAGATTGCATGCATTTCTT 59.294 37.500 23.37 8.59 0.00 2.52
254 255 4.270834 AGTCTCAGATTGCATGCATTTCT 58.729 39.130 23.37 22.35 0.00 2.52
255 256 4.634184 AGTCTCAGATTGCATGCATTTC 57.366 40.909 23.37 20.49 0.00 2.17
256 257 4.461431 TGAAGTCTCAGATTGCATGCATTT 59.539 37.500 23.37 12.55 0.00 2.32
257 258 4.014406 TGAAGTCTCAGATTGCATGCATT 58.986 39.130 23.37 18.66 0.00 3.56
258 259 3.617284 TGAAGTCTCAGATTGCATGCAT 58.383 40.909 23.37 11.80 0.00 3.96
259 260 3.062122 TGAAGTCTCAGATTGCATGCA 57.938 42.857 18.46 18.46 0.00 3.96
270 271 7.654568 TCAAGTATACGTTTTCTGAAGTCTCA 58.345 34.615 0.00 0.00 0.00 3.27
271 272 7.808856 ACTCAAGTATACGTTTTCTGAAGTCTC 59.191 37.037 0.00 0.00 0.00 3.36
272 273 7.659186 ACTCAAGTATACGTTTTCTGAAGTCT 58.341 34.615 0.00 0.00 0.00 3.24
273 274 7.594015 TGACTCAAGTATACGTTTTCTGAAGTC 59.406 37.037 14.56 14.56 0.00 3.01
274 275 7.431249 TGACTCAAGTATACGTTTTCTGAAGT 58.569 34.615 0.00 0.00 0.00 3.01
275 276 7.869016 TGACTCAAGTATACGTTTTCTGAAG 57.131 36.000 0.00 0.00 0.00 3.02
276 277 8.545420 GTTTGACTCAAGTATACGTTTTCTGAA 58.455 33.333 0.00 0.00 0.00 3.02
277 278 7.924412 AGTTTGACTCAAGTATACGTTTTCTGA 59.076 33.333 0.00 0.00 0.00 3.27
278 279 8.073355 AGTTTGACTCAAGTATACGTTTTCTG 57.927 34.615 0.00 0.00 0.00 3.02
279 280 9.189723 GTAGTTTGACTCAAGTATACGTTTTCT 57.810 33.333 0.00 0.00 0.00 2.52
280 281 8.971321 TGTAGTTTGACTCAAGTATACGTTTTC 58.029 33.333 0.00 0.00 0.00 2.29
281 282 8.758715 GTGTAGTTTGACTCAAGTATACGTTTT 58.241 33.333 0.00 0.00 0.00 2.43
282 283 8.139989 AGTGTAGTTTGACTCAAGTATACGTTT 58.860 33.333 0.00 0.00 0.00 3.60
283 284 7.655490 AGTGTAGTTTGACTCAAGTATACGTT 58.345 34.615 0.00 0.00 0.00 3.99
284 285 7.211966 AGTGTAGTTTGACTCAAGTATACGT 57.788 36.000 0.00 0.00 0.00 3.57
285 286 8.663025 TCTAGTGTAGTTTGACTCAAGTATACG 58.337 37.037 0.00 0.00 0.00 3.06
290 291 9.080097 ACTATTCTAGTGTAGTTTGACTCAAGT 57.920 33.333 4.62 0.00 37.69 3.16
291 292 9.562583 GACTATTCTAGTGTAGTTTGACTCAAG 57.437 37.037 9.91 0.00 39.59 3.02
292 293 9.074576 TGACTATTCTAGTGTAGTTTGACTCAA 57.925 33.333 9.91 0.00 39.59 3.02
293 294 8.631480 TGACTATTCTAGTGTAGTTTGACTCA 57.369 34.615 9.91 2.59 39.59 3.41
294 295 8.732531 ACTGACTATTCTAGTGTAGTTTGACTC 58.267 37.037 9.91 0.68 39.59 3.36
295 296 8.516234 CACTGACTATTCTAGTGTAGTTTGACT 58.484 37.037 9.91 0.00 39.59 3.41
296 297 8.512956 TCACTGACTATTCTAGTGTAGTTTGAC 58.487 37.037 9.91 1.44 41.82 3.18
297 298 8.631480 TCACTGACTATTCTAGTGTAGTTTGA 57.369 34.615 9.91 9.94 41.82 2.69
298 299 9.692749 TTTCACTGACTATTCTAGTGTAGTTTG 57.307 33.333 9.91 8.74 41.82 2.93
301 302 9.694137 GTTTTTCACTGACTATTCTAGTGTAGT 57.306 33.333 8.78 8.78 41.82 2.73
302 303 9.915629 AGTTTTTCACTGACTATTCTAGTGTAG 57.084 33.333 0.00 0.00 41.82 2.74
304 305 9.694137 GTAGTTTTTCACTGACTATTCTAGTGT 57.306 33.333 0.00 0.00 41.82 3.55
305 306 9.692749 TGTAGTTTTTCACTGACTATTCTAGTG 57.307 33.333 0.00 0.00 42.34 2.74
306 307 9.694137 GTGTAGTTTTTCACTGACTATTCTAGT 57.306 33.333 0.00 0.00 38.18 2.57
307 308 9.915629 AGTGTAGTTTTTCACTGACTATTCTAG 57.084 33.333 0.00 0.00 42.30 2.43
329 330 9.588096 AAGGAAAAGACCTTTATAATTCAGTGT 57.412 29.630 0.00 0.00 46.61 3.55
330 331 9.846248 CAAGGAAAAGACCTTTATAATTCAGTG 57.154 33.333 0.00 0.00 46.61 3.66
331 332 9.807921 TCAAGGAAAAGACCTTTATAATTCAGT 57.192 29.630 0.00 0.00 46.61 3.41
340 341 9.297037 CCTATTCTTTCAAGGAAAAGACCTTTA 57.703 33.333 0.00 0.00 46.61 1.85
341 342 7.785028 ACCTATTCTTTCAAGGAAAAGACCTTT 59.215 33.333 0.00 0.00 46.61 3.11
343 344 6.853490 ACCTATTCTTTCAAGGAAAAGACCT 58.147 36.000 0.00 0.00 43.18 3.85
344 345 7.230712 TCAACCTATTCTTTCAAGGAAAAGACC 59.769 37.037 0.00 0.00 43.18 3.85
345 346 8.166422 TCAACCTATTCTTTCAAGGAAAAGAC 57.834 34.615 0.00 0.00 43.18 3.01
346 347 8.217799 TCTCAACCTATTCTTTCAAGGAAAAGA 58.782 33.333 0.00 0.00 42.12 2.52
347 348 8.396272 TCTCAACCTATTCTTTCAAGGAAAAG 57.604 34.615 0.00 0.00 37.55 2.27
348 349 8.760980 TTCTCAACCTATTCTTTCAAGGAAAA 57.239 30.769 0.00 0.00 34.34 2.29
349 350 8.630037 GTTTCTCAACCTATTCTTTCAAGGAAA 58.370 33.333 0.00 0.00 34.34 3.13
350 351 7.777910 TGTTTCTCAACCTATTCTTTCAAGGAA 59.222 33.333 0.00 0.00 34.34 3.36
351 352 7.287061 TGTTTCTCAACCTATTCTTTCAAGGA 58.713 34.615 0.00 0.00 34.34 3.36
352 353 7.510549 TGTTTCTCAACCTATTCTTTCAAGG 57.489 36.000 0.00 0.00 36.42 3.61
353 354 9.801873 TTTTGTTTCTCAACCTATTCTTTCAAG 57.198 29.630 0.00 0.00 35.61 3.02
354 355 9.581099 GTTTTGTTTCTCAACCTATTCTTTCAA 57.419 29.630 0.00 0.00 35.61 2.69
355 356 7.913297 CGTTTTGTTTCTCAACCTATTCTTTCA 59.087 33.333 0.00 0.00 35.61 2.69
356 357 7.913821 ACGTTTTGTTTCTCAACCTATTCTTTC 59.086 33.333 0.00 0.00 35.61 2.62
357 358 7.700656 CACGTTTTGTTTCTCAACCTATTCTTT 59.299 33.333 0.00 0.00 35.61 2.52
358 359 7.148137 ACACGTTTTGTTTCTCAACCTATTCTT 60.148 33.333 0.00 0.00 33.09 2.52
359 360 6.317893 ACACGTTTTGTTTCTCAACCTATTCT 59.682 34.615 0.00 0.00 33.09 2.40
360 361 6.492254 ACACGTTTTGTTTCTCAACCTATTC 58.508 36.000 0.00 0.00 33.09 1.75
361 362 6.445357 ACACGTTTTGTTTCTCAACCTATT 57.555 33.333 0.00 0.00 33.09 1.73
362 363 5.277154 CGACACGTTTTGTTTCTCAACCTAT 60.277 40.000 0.00 0.00 39.17 2.57
363 364 4.033129 CGACACGTTTTGTTTCTCAACCTA 59.967 41.667 0.00 0.00 39.17 3.08
364 365 3.181514 CGACACGTTTTGTTTCTCAACCT 60.182 43.478 0.00 0.00 39.17 3.50
365 366 3.095738 CGACACGTTTTGTTTCTCAACC 58.904 45.455 0.00 0.00 39.17 3.77
366 367 3.777161 GTCGACACGTTTTGTTTCTCAAC 59.223 43.478 11.55 0.00 39.17 3.18
367 368 3.680937 AGTCGACACGTTTTGTTTCTCAA 59.319 39.130 19.50 0.00 39.17 3.02
368 369 3.255725 AGTCGACACGTTTTGTTTCTCA 58.744 40.909 19.50 0.00 39.17 3.27
369 370 3.920112 AGTCGACACGTTTTGTTTCTC 57.080 42.857 19.50 0.00 39.17 2.87
370 371 4.390909 AGAAAGTCGACACGTTTTGTTTCT 59.609 37.500 19.50 17.00 39.17 2.52
371 372 4.644954 AGAAAGTCGACACGTTTTGTTTC 58.355 39.130 19.50 15.10 39.17 2.78
372 373 4.673534 AGAAAGTCGACACGTTTTGTTT 57.326 36.364 19.50 6.59 39.17 2.83
373 374 5.978934 ATAGAAAGTCGACACGTTTTGTT 57.021 34.783 19.50 0.00 39.17 2.83
374 375 5.050567 GGAATAGAAAGTCGACACGTTTTGT 60.051 40.000 19.50 10.28 43.10 2.83
375 376 5.050634 TGGAATAGAAAGTCGACACGTTTTG 60.051 40.000 19.50 0.00 0.00 2.44
376 377 5.051816 TGGAATAGAAAGTCGACACGTTTT 58.948 37.500 19.50 9.31 0.00 2.43
377 378 4.624015 TGGAATAGAAAGTCGACACGTTT 58.376 39.130 19.50 9.70 0.00 3.60
378 379 4.247267 TGGAATAGAAAGTCGACACGTT 57.753 40.909 19.50 8.60 0.00 3.99
379 380 3.928727 TGGAATAGAAAGTCGACACGT 57.071 42.857 19.50 1.31 0.00 4.49
380 381 4.235360 ACTTGGAATAGAAAGTCGACACG 58.765 43.478 19.50 0.00 30.87 4.49
381 382 6.237861 GCATACTTGGAATAGAAAGTCGACAC 60.238 42.308 19.50 8.73 37.74 3.67
382 383 5.810587 GCATACTTGGAATAGAAAGTCGACA 59.189 40.000 19.50 0.00 37.74 4.35
383 384 6.043411 AGCATACTTGGAATAGAAAGTCGAC 58.957 40.000 7.70 7.70 37.74 4.20
384 385 6.222038 AGCATACTTGGAATAGAAAGTCGA 57.778 37.500 0.00 0.00 37.74 4.20
385 386 6.978659 TGTAGCATACTTGGAATAGAAAGTCG 59.021 38.462 0.00 0.00 43.54 4.18
386 387 8.768955 CATGTAGCATACTTGGAATAGAAAGTC 58.231 37.037 0.00 0.00 43.54 3.01
387 388 8.668510 CATGTAGCATACTTGGAATAGAAAGT 57.331 34.615 0.00 0.00 43.54 2.66
404 405 9.373603 ACACGTTAGATTTATTAACATGTAGCA 57.626 29.630 0.00 0.00 36.15 3.49
405 406 9.845305 GACACGTTAGATTTATTAACATGTAGC 57.155 33.333 0.00 0.00 37.50 3.58
551 554 2.151202 CTTCGGAAAAGCTAACTGGCA 58.849 47.619 0.00 0.00 34.17 4.92
634 638 1.078848 CCTGGAGCTGTCGGGAAAG 60.079 63.158 5.77 0.00 0.00 2.62
653 659 3.266772 AGATTACAACAGCCATGAAGGGA 59.733 43.478 0.00 0.00 38.09 4.20
682 698 5.588648 TCCCGATTTGAAGGACACATAATTC 59.411 40.000 0.00 0.00 0.00 2.17
703 720 1.838073 TTCGGCTTGGAGGTCTTCCC 61.838 60.000 0.00 0.00 46.19 3.97
715 732 1.838112 TCATGATTGGCTTTCGGCTT 58.162 45.000 0.00 0.00 41.46 4.35
767 787 4.554973 ACGCGTCGTTTTTATGTCTAGTAC 59.445 41.667 5.58 0.00 36.35 2.73
788 2496 1.004200 AAGCAGTCCCCGGTTAACG 60.004 57.895 0.00 0.00 43.80 3.18
804 2512 5.428184 ACCTGTAAGATGGAGAAAGGAAG 57.572 43.478 0.00 0.00 34.07 3.46
965 2673 8.514594 CATTATTGTTTCTCAGCCTTGACTTTA 58.485 33.333 0.00 0.00 0.00 1.85
1059 2778 3.817084 CTCCTGCTTCTGTTTTGTCATGA 59.183 43.478 0.00 0.00 0.00 3.07
1096 2815 4.075793 AGAGCGGGGCTGGGACTA 62.076 66.667 0.00 0.00 39.88 2.59
1099 2818 4.722535 AAGAGAGCGGGGCTGGGA 62.723 66.667 0.00 0.00 39.88 4.37
1102 2821 2.498726 GAGAAGAGAGCGGGGCTG 59.501 66.667 0.00 0.00 39.88 4.85
1188 2907 3.936203 TCGCCGGTTGCCTCTTGT 61.936 61.111 1.90 0.00 36.24 3.16
1260 2979 2.203379 CATGATCCATGGCCGGCA 60.203 61.111 30.85 15.30 38.11 5.69
1262 2981 4.069869 GACATGATCCATGGCCGG 57.930 61.111 6.96 0.00 43.53 6.13
1359 3079 5.098893 CAGACACCAAGAAGAGATAGAACG 58.901 45.833 0.00 0.00 0.00 3.95
1452 3172 7.117667 ACGCACCACATATTATGTACACATATG 59.882 37.037 23.57 23.57 42.70 1.78
1520 3240 0.949397 CAGAAGAAGCAGCAGCACAA 59.051 50.000 3.17 0.00 45.49 3.33
1655 3375 7.816995 GGCAACCAAACTGAAAATATACAATCA 59.183 33.333 0.00 0.00 0.00 2.57
1757 3496 3.391049 GGTCTCTTGGTGTACAGTGTTC 58.609 50.000 0.00 0.00 0.00 3.18
1810 3555 5.743636 ATACCACAGTTTCCTTACGGTTA 57.256 39.130 0.00 0.00 0.00 2.85
1820 3565 4.437930 GCATCTGCTGAATACCACAGTTTC 60.438 45.833 0.00 0.00 37.64 2.78
1849 3594 3.481112 ACAACAACAACAAGGAACGTC 57.519 42.857 0.00 0.00 0.00 4.34
1853 3598 4.950050 ACAACAACAACAACAACAAGGAA 58.050 34.783 0.00 0.00 0.00 3.36
1856 3601 6.755461 TTGTACAACAACAACAACAACAAG 57.245 33.333 3.59 0.00 34.50 3.16
1859 3604 8.621921 TGATATTGTACAACAACAACAACAAC 57.378 30.769 11.22 0.00 41.40 3.32
1864 3609 8.462811 ACAAACTGATATTGTACAACAACAACA 58.537 29.630 11.22 5.23 41.40 3.33
1869 3614 9.295214 CAACAACAAACTGATATTGTACAACAA 57.705 29.630 11.22 2.45 42.95 2.83
1887 3632 5.048083 GGAGAATCATAGGCAACAACAACAA 60.048 40.000 0.00 0.00 36.25 2.83
1930 3736 2.867429 GTCATCGGGACTGCATTTTTG 58.133 47.619 0.00 0.00 43.46 2.44
2209 4015 4.780815 CTGTGCCAGGATTATAGGAAACA 58.219 43.478 0.00 0.00 0.00 2.83
2241 4047 0.677098 TGACCGCTAGAGTCGCTCTT 60.677 55.000 13.34 0.00 41.50 2.85
2321 4127 2.185350 CGGAATGGCGACTCAGCT 59.815 61.111 0.00 0.00 37.29 4.24
2453 4259 1.404181 GCTTGGGATTTTTCCTTCGGC 60.404 52.381 0.00 0.00 0.00 5.54
2475 4281 2.284331 TACTTCAGGCCGGGCTCA 60.284 61.111 30.43 14.64 0.00 4.26
2481 4287 2.002586 CTGTTCATGTACTTCAGGCCG 58.997 52.381 0.00 0.00 0.00 6.13
2486 4292 3.483808 TGCCACTGTTCATGTACTTCA 57.516 42.857 4.01 0.00 0.00 3.02
2593 4400 1.134818 CCCGAAAGCCCAAATAAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
2640 4447 0.179000 GACATTCGGACCAGGCTCAT 59.821 55.000 0.00 0.00 0.00 2.90
2654 4461 0.673644 CGAACCTGAAGCCCGACATT 60.674 55.000 0.00 0.00 0.00 2.71
2749 4556 2.029124 CGCTTGCACCAAACTGTTTTTC 59.971 45.455 2.41 0.00 0.00 2.29
2853 4660 2.758737 GGTCCATCCGGAGTCCGT 60.759 66.667 28.98 9.99 46.80 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.