AutoCloner

Multiple sequence alignment - TraesCS6D01G165300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G165300	chr6D	100.000	2147	0	0	1	2147	144544589	144546735	0.000000e+00	3965
1	TraesCS6D01G165300	chr6D	96.997	666	15	4	1484	2147	119451059	119451721	0.000000e+00	1114
2	TraesCS6D01G165300	chr6D	85.987	157	18	4	123	277	144543871	144543717	4.740000e-37	165
3	TraesCS6D01G165300	chr6A	89.798	1088	32	16	377	1410	202339674	202338612	0.000000e+00	1321
4	TraesCS6D01G165300	chr6A	92.727	385	23	4	1	381	202345469	202345086	3.110000e-153	551
5	TraesCS6D01G165300	chr5D	97.143	665	15	3	1484	2147	532000528	532001189	0.000000e+00	1120
6	TraesCS6D01G165300	chr5D	95.359	668	25	6	1483	2147	329850838	329851502	0.000000e+00	1057
7	TraesCS6D01G165300	chr1D	96.842	665	18	3	1484	2147	426652879	426653541	0.000000e+00	1109
8	TraesCS6D01G165300	chr1D	96.687	664	21	1	1484	2147	69481764	69482426	0.000000e+00	1103
9	TraesCS6D01G165300	chr1D	80.657	274	53	0	3	276	46627069	46626796	1.670000e-51	213
10	TraesCS6D01G165300	chr6B	94.737	722	19	6	720	1440	257576748	257577451	0.000000e+00	1105
11	TraesCS6D01G165300	chr6B	92.285	687	38	4	1	674	257576056	257576740	0.000000e+00	961
12	TraesCS6D01G165300	chr6B	80.172	232	39	7	45	273	257575355	257575128	1.320000e-37	167
13	TraesCS6D01G165300	chr6B	80.795	151	29	0	123	273	20901694	20901544	3.740000e-23	119
14	TraesCS6D01G165300	chr4D	96.960	658	18	2	1491	2147	66479942	66479286	0.000000e+00	1103
15	TraesCS6D01G165300	chr4D	96.212	660	20	2	1491	2145	225982796	225983455	0.000000e+00	1075
16	TraesCS6D01G165300	chr4D	95.052	667	27	6	1484	2147	277622029	277621366	0.000000e+00	1044
17	TraesCS6D01G165300	chr2D	96.547	666	19	3	1483	2146	512897760	512897097	0.000000e+00	1099
18	TraesCS6D01G165300	chr1A	88.083	193	17	5	82	273	135712565	135712752	7.710000e-55	224
19	TraesCS6D01G165300	chr3D	79.724	217	41	3	59	273	553380302	553380087	1.030000e-33	154
20	TraesCS6D01G165300	chr7B	89.474	114	12	0	167	280	247989392	247989505	6.180000e-31	145

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G165300	chr6D	144544589	144546735	2146	False	3965	3965	100.000	1	2147	1	chr6D.!!$F2	2146
1	TraesCS6D01G165300	chr6D	119451059	119451721	662	False	1114	1114	96.997	1484	2147	1	chr6D.!!$F1	663
2	TraesCS6D01G165300	chr6A	202338612	202339674	1062	True	1321	1321	89.798	377	1410	1	chr6A.!!$R1	1033
3	TraesCS6D01G165300	chr5D	532000528	532001189	661	False	1120	1120	97.143	1484	2147	1	chr5D.!!$F2	663
4	TraesCS6D01G165300	chr5D	329850838	329851502	664	False	1057	1057	95.359	1483	2147	1	chr5D.!!$F1	664
5	TraesCS6D01G165300	chr1D	426652879	426653541	662	False	1109	1109	96.842	1484	2147	1	chr1D.!!$F2	663
6	TraesCS6D01G165300	chr1D	69481764	69482426	662	False	1103	1103	96.687	1484	2147	1	chr1D.!!$F1	663
7	TraesCS6D01G165300	chr6B	257576056	257577451	1395	False	1033	1105	93.511	1	1440	2	chr6B.!!$F1	1439
8	TraesCS6D01G165300	chr4D	66479286	66479942	656	True	1103	1103	96.960	1491	2147	1	chr4D.!!$R1	656
9	TraesCS6D01G165300	chr4D	225982796	225983455	659	False	1075	1075	96.212	1491	2145	1	chr4D.!!$F1	654
10	TraesCS6D01G165300	chr4D	277621366	277622029	663	True	1044	1044	95.052	1484	2147	1	chr4D.!!$R2	663
11	TraesCS6D01G165300	chr2D	512897097	512897760	663	True	1099	1099	96.547	1483	2146	1	chr2D.!!$R1	663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
102	103	0.386838	GTAGGCATGCCAAATCAGCC	59.613	55.0	37.18	8.26	45.54	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1919	2004	1.271934	CCATTCACGGTGCCAAAATCA	59.728	47.619	2.51	0.0	0.0	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
70	71	0.991920	GGGTCCATCTTCCACCTCAA	59.008	55.000	0.00	0.00	0.00	3.02
79	80	6.157820	TCCATCTTCCACCTCAACATATTGTA	59.842	38.462	0.00	0.00	37.11	2.41
80	81	7.000472	CCATCTTCCACCTCAACATATTGTAT	59.000	38.462	0.00	0.00	37.11	2.29
102	103	0.386838	GTAGGCATGCCAAATCAGCC	59.613	55.000	37.18	8.26	45.54	4.85
105	106	1.143183	GCATGCCAAATCAGCCTGG	59.857	57.895	6.36	0.00	35.67	4.45
140	141	6.460123	CCAACTTGTCAGTTTTGCTGTTAGAT	60.460	38.462	0.00	0.00	40.66	1.98
186	187	6.437928	GTGATTTGTTACTCACTTGATGCAA	58.562	36.000	0.00	0.00	38.94	4.08
252	253	6.441222	AGGAGTACCCTAGTCATAAATGTGA	58.559	40.000	1.40	0.00	45.48	3.58
256	257	4.718961	ACCCTAGTCATAAATGTGATGGC	58.281	43.478	0.00	0.00	0.00	4.40
260	261	6.238842	CCCTAGTCATAAATGTGATGGCTTTG	60.239	42.308	0.00	0.00	39.84	2.77
318	319	9.743057	TGTTTGTTCGATTTATGAATTTCACTT	57.257	25.926	0.15	0.00	0.00	3.16
367	368	3.625313	TGAAAACTCAAATGCACGTCTCA	59.375	39.130	0.00	0.00	0.00	3.27
413	414	2.998670	CGCTGACTTGATCAACTCATGT	59.001	45.455	15.43	7.46	43.02	3.21
424	425	2.229543	TCAACTCATGTCCAGCAAATGC	59.770	45.455	0.00	0.00	42.49	3.56
454	455	0.673333	TCTCATCGCGGCAACAACAT	60.673	50.000	6.13	0.00	0.00	2.71
463	464	2.865670	GCGGCAACAACATGGAAATTGA	60.866	45.455	0.00	0.00	0.00	2.57
477	478	7.175293	ACATGGAAATTGAAAAATGAATGGTGG	59.825	33.333	0.00	0.00	0.00	4.61
480	481	7.659390	TGGAAATTGAAAAATGAATGGTGGTAC	59.341	33.333	0.00	0.00	0.00	3.34
618	640	3.531538	CGGACGCCAGCCATATATATTT	58.468	45.455	0.00	0.00	0.00	1.40
619	641	3.309682	CGGACGCCAGCCATATATATTTG	59.690	47.826	0.00	0.00	0.00	2.32
639	661	1.666011	GACGCTTGACCAGGTCAGA	59.334	57.895	21.87	12.30	43.69	3.27
657	679	4.683781	GTCAGATTATAGCTCCGCTCAAAG	59.316	45.833	0.00	0.00	40.44	2.77
838	860	4.463879	CACCCAGCTCCCTCTGCG	62.464	72.222	0.00	0.00	35.28	5.18
842	864	3.826754	CAGCTCCCTCTGCGCGTA	61.827	66.667	8.43	0.71	35.28	4.42
843	865	2.835431	AGCTCCCTCTGCGCGTAT	60.835	61.111	8.43	0.00	35.28	3.06
844	866	1.528542	AGCTCCCTCTGCGCGTATA	60.529	57.895	8.43	0.00	35.28	1.47
845	867	0.896019	AGCTCCCTCTGCGCGTATAT	60.896	55.000	8.43	0.00	35.28	0.86
846	868	0.809385	GCTCCCTCTGCGCGTATATA	59.191	55.000	8.43	0.00	0.00	0.86
847	869	1.405821	GCTCCCTCTGCGCGTATATAT	59.594	52.381	8.43	0.00	0.00	0.86
848	870	2.541999	GCTCCCTCTGCGCGTATATATC	60.542	54.545	8.43	0.00	0.00	1.63
849	871	2.946329	CTCCCTCTGCGCGTATATATCT	59.054	50.000	8.43	0.00	0.00	1.98
850	872	2.943690	TCCCTCTGCGCGTATATATCTC	59.056	50.000	8.43	0.00	0.00	2.75
851	873	2.946329	CCCTCTGCGCGTATATATCTCT	59.054	50.000	8.43	0.00	0.00	3.10
887	923	3.435457	CCATGGCATCAACCCATCTCTAA	60.435	47.826	0.00	0.00	41.02	2.10
951	988	1.067283	CGAGCTCTCTCCAAAGCAAGA	60.067	52.381	12.85	0.00	41.06	3.02
1068	1105	4.530857	GGATGGCGGAGGGTCGTG	62.531	72.222	0.00	0.00	0.00	4.35
1166	1203	1.522092	CTGCTACATCGGCTCCCAA	59.478	57.895	0.00	0.00	0.00	4.12
1280	1345	7.689400	TGTTCTTTCTTTTTAAACTTCGACGTC	59.311	33.333	5.18	5.18	0.00	4.34
1417	1487	4.310022	AAATTTATCACGGGTGGGAAGA	57.690	40.909	0.00	0.00	0.00	2.87
1440	1510	8.753497	AGAGACAAAACCTAGAAAAATGAGTT	57.247	30.769	0.00	0.00	0.00	3.01
1441	1511	9.190317	AGAGACAAAACCTAGAAAAATGAGTTT	57.810	29.630	0.00	0.00	0.00	2.66
1442	1512	9.803315	GAGACAAAACCTAGAAAAATGAGTTTT	57.197	29.630	0.00	0.00	42.28	2.43
1448	1518	9.750125	AAACCTAGAAAAATGAGTTTTTAGCAG	57.250	29.630	0.00	0.00	45.08	4.24
1449	1519	7.371159	ACCTAGAAAAATGAGTTTTTAGCAGC	58.629	34.615	0.00	0.00	45.08	5.25
1450	1520	7.014230	ACCTAGAAAAATGAGTTTTTAGCAGCA	59.986	33.333	0.00	0.00	45.08	4.41
1451	1521	7.867403	CCTAGAAAAATGAGTTTTTAGCAGCAA	59.133	33.333	0.00	0.00	45.08	3.91
1452	1522	9.248291	CTAGAAAAATGAGTTTTTAGCAGCAAA	57.752	29.630	0.00	0.00	45.08	3.68
1453	1523	8.667076	AGAAAAATGAGTTTTTAGCAGCAAAT	57.333	26.923	0.00	0.00	45.08	2.32
1454	1524	8.553696	AGAAAAATGAGTTTTTAGCAGCAAATG	58.446	29.630	0.00	0.00	45.08	2.32
1455	1525	8.436046	AAAAATGAGTTTTTAGCAGCAAATGA	57.564	26.923	0.00	0.00	43.70	2.57
1456	1526	7.412137	AAATGAGTTTTTAGCAGCAAATGAC	57.588	32.000	0.00	0.00	0.00	3.06
1457	1527	4.870363	TGAGTTTTTAGCAGCAAATGACC	58.130	39.130	0.00	0.00	0.00	4.02
1458	1528	4.340666	TGAGTTTTTAGCAGCAAATGACCA	59.659	37.500	0.00	0.00	0.00	4.02
1459	1529	4.874970	AGTTTTTAGCAGCAAATGACCAG	58.125	39.130	0.00	0.00	0.00	4.00
1460	1530	4.342092	AGTTTTTAGCAGCAAATGACCAGT	59.658	37.500	0.00	0.00	0.00	4.00
1461	1531	5.534654	AGTTTTTAGCAGCAAATGACCAGTA	59.465	36.000	0.00	0.00	0.00	2.74
1462	1532	6.040391	AGTTTTTAGCAGCAAATGACCAGTAA	59.960	34.615	0.00	0.00	0.00	2.24
1463	1533	6.588719	TTTTAGCAGCAAATGACCAGTAAT	57.411	33.333	0.00	0.00	0.00	1.89
1464	1534	7.695480	TTTTAGCAGCAAATGACCAGTAATA	57.305	32.000	0.00	0.00	0.00	0.98
1465	1535	6.677781	TTAGCAGCAAATGACCAGTAATAC	57.322	37.500	0.00	0.00	0.00	1.89
1466	1536	3.947834	AGCAGCAAATGACCAGTAATACC	59.052	43.478	0.00	0.00	0.00	2.73
1467	1537	3.947834	GCAGCAAATGACCAGTAATACCT	59.052	43.478	0.00	0.00	0.00	3.08
1468	1538	5.104527	AGCAGCAAATGACCAGTAATACCTA	60.105	40.000	0.00	0.00	0.00	3.08
1469	1539	5.588648	GCAGCAAATGACCAGTAATACCTAA	59.411	40.000	0.00	0.00	0.00	2.69
1470	1540	6.238484	GCAGCAAATGACCAGTAATACCTAAG	60.238	42.308	0.00	0.00	0.00	2.18
1471	1541	5.823045	AGCAAATGACCAGTAATACCTAAGC	59.177	40.000	0.00	0.00	0.00	3.09
1472	1542	5.008712	GCAAATGACCAGTAATACCTAAGCC	59.991	44.000	0.00	0.00	0.00	4.35
1473	1543	6.357367	CAAATGACCAGTAATACCTAAGCCT	58.643	40.000	0.00	0.00	0.00	4.58
1474	1544	5.810080	ATGACCAGTAATACCTAAGCCTC	57.190	43.478	0.00	0.00	0.00	4.70
1475	1545	4.880164	TGACCAGTAATACCTAAGCCTCT	58.120	43.478	0.00	0.00	0.00	3.69
1476	1546	6.022107	TGACCAGTAATACCTAAGCCTCTA	57.978	41.667	0.00	0.00	0.00	2.43
1477	1547	6.621394	TGACCAGTAATACCTAAGCCTCTAT	58.379	40.000	0.00	0.00	0.00	1.98
1478	1548	7.762610	TGACCAGTAATACCTAAGCCTCTATA	58.237	38.462	0.00	0.00	0.00	1.31
1479	1549	8.399529	TGACCAGTAATACCTAAGCCTCTATAT	58.600	37.037	0.00	0.00	0.00	0.86
1480	1550	8.826293	ACCAGTAATACCTAAGCCTCTATATC	57.174	38.462	0.00	0.00	0.00	1.63
1481	1551	7.840210	ACCAGTAATACCTAAGCCTCTATATCC	59.160	40.741	0.00	0.00	0.00	2.59
1482	1552	7.013464	CCAGTAATACCTAAGCCTCTATATCCG	59.987	44.444	0.00	0.00	0.00	4.18
1483	1553	7.013464	CAGTAATACCTAAGCCTCTATATCCGG	59.987	44.444	0.00	0.00	0.00	5.14
1484	1554	2.458620	ACCTAAGCCTCTATATCCGGC	58.541	52.381	0.00	0.00	44.09	6.13
1707	1785	2.039624	GGAGGGAGGGAGCTGTCA	59.960	66.667	0.00	0.00	0.00	3.58
1919	2004	5.067283	ACACCTAAATGAGCAAGTTTTTCGT	59.933	36.000	0.00	0.00	0.00	3.85
2071	2156	1.666011	GTGGAGGTGAAGCTCGTCA	59.334	57.895	3.60	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	1.213926	GGCCTCCCATCTCATTTCACT	59.786	52.381	0.00	0.00	0.00	3.41
30	31	2.038813	TGTCGGCCTCCCATCTCA	59.961	61.111	0.00	0.00	0.00	3.27
70	71	6.720309	TGGCATGCCTACATATACAATATGT	58.280	36.000	35.53	14.94	40.77	2.29
79	80	3.508793	GCTGATTTGGCATGCCTACATAT	59.491	43.478	35.53	19.58	33.67	1.78
80	81	2.886523	GCTGATTTGGCATGCCTACATA	59.113	45.455	35.53	15.54	33.67	2.29
105	106	2.158561	GACAAGTTGGCCCCACATGC	62.159	60.000	7.96	0.00	0.00	4.06
140	141	2.733858	GCCGATTCAAAATTAAGCCGCA	60.734	45.455	0.00	0.00	0.00	5.69
213	214	5.936372	GGGTACTCCTAAACTACCACTTTTG	59.064	44.000	0.00	0.00	32.85	2.44
217	218	4.689014	AGGGTACTCCTAAACTACCACT	57.311	45.455	1.40	0.00	45.98	4.00
218	219	5.514169	ACTAGGGTACTCCTAAACTACCAC	58.486	45.833	10.27	0.00	46.76	4.16
221	222	8.986929	TTATGACTAGGGTACTCCTAAACTAC	57.013	38.462	10.27	3.55	46.76	2.73
244	245	5.664294	ATTGCTCAAAGCCATCACATTTA	57.336	34.783	0.00	0.00	41.51	1.40
252	253	3.428045	GCGAGTAAATTGCTCAAAGCCAT	60.428	43.478	11.41	0.00	41.51	4.40
256	257	5.287035	GGATTTGCGAGTAAATTGCTCAAAG	59.713	40.000	11.41	0.00	39.30	2.77
260	261	4.622701	AGGATTTGCGAGTAAATTGCTC	57.377	40.909	0.79	0.79	39.30	4.26
323	324	5.241506	TCAACCAGATTAAGCAGAACTTTGG	59.758	40.000	0.00	0.00	39.97	3.28
333	334	7.359514	GCATTTGAGTTTTCAACCAGATTAAGC	60.360	37.037	0.00	0.00	42.79	3.09
367	368	4.696479	ACTCATTCGATGGGAAATAGCT	57.304	40.909	0.00	0.00	38.36	3.32
413	414	3.372730	GGGCGTGCATTTGCTGGA	61.373	61.111	3.94	0.00	42.66	3.86
417	418	3.225069	AACCAGGGCGTGCATTTGC	62.225	57.895	0.70	0.00	42.50	3.68
424	425	1.811266	CGATGAGAACCAGGGCGTG	60.811	63.158	0.00	0.00	0.00	5.34
454	455	6.599445	ACCACCATTCATTTTTCAATTTCCA	58.401	32.000	0.00	0.00	0.00	3.53
463	464	4.220602	GCCTCTGTACCACCATTCATTTTT	59.779	41.667	0.00	0.00	0.00	1.94
618	640	2.847234	ACCTGGTCAAGCGTCCCA	60.847	61.111	0.00	0.00	0.00	4.37
619	641	2.047179	GACCTGGTCAAGCGTCCC	60.047	66.667	21.70	0.00	32.09	4.46
657	679	7.450634	GGGAATAACCTACCCCATTTCTATTTC	59.549	40.741	0.00	0.00	38.69	2.17
743	765	0.998727	CTTTTTGCCTGTCGCTTCGC	60.999	55.000	0.00	0.00	38.78	4.70
838	860	0.840729	GCGCGCAGAGATATATACGC	59.159	55.000	29.10	0.00	42.69	4.42
839	861	1.105363	CGCGCGCAGAGATATATACG	58.895	55.000	32.61	5.56	0.00	3.06
840	862	0.840729	GCGCGCGCAGAGATATATAC	59.159	55.000	46.11	14.81	41.49	1.47
841	863	3.235944	GCGCGCGCAGAGATATATA	57.764	52.632	46.11	0.00	41.49	0.86
842	864	4.079090	GCGCGCGCAGAGATATAT	57.921	55.556	46.11	0.00	41.49	0.86
887	923	1.598130	GGTGACAAGTTCGGCAGCT	60.598	57.895	0.00	0.00	0.00	4.24
951	988	2.294791	CGACAGAAAGCCGATCCTAGAT	59.705	50.000	0.00	0.00	0.00	1.98
1166	1203	1.817740	GCCGCCCATGGTATGTATGTT	60.818	52.381	11.73	0.00	0.00	2.71
1280	1345	4.199310	CCTCCTCTCTCAACTCTCACTAG	58.801	52.174	0.00	0.00	0.00	2.57
1350	1420	3.330126	TCTGATACTAAGGTCAGGGGG	57.670	52.381	2.90	0.00	41.64	5.40
1395	1465	4.668636	TCTTCCCACCCGTGATAAATTTT	58.331	39.130	0.00	0.00	0.00	1.82
1440	1510	6.588719	ATTACTGGTCATTTGCTGCTAAAA	57.411	33.333	0.00	0.00	0.00	1.52
1441	1511	6.094881	GGTATTACTGGTCATTTGCTGCTAAA	59.905	38.462	0.00	0.45	0.00	1.85
1442	1512	5.588648	GGTATTACTGGTCATTTGCTGCTAA	59.411	40.000	0.00	0.00	0.00	3.09
1443	1513	5.104527	AGGTATTACTGGTCATTTGCTGCTA	60.105	40.000	0.00	0.00	0.00	3.49
1444	1514	3.947834	GGTATTACTGGTCATTTGCTGCT	59.052	43.478	0.00	0.00	0.00	4.24
1445	1515	3.947834	AGGTATTACTGGTCATTTGCTGC	59.052	43.478	0.00	0.00	0.00	5.25
1446	1516	6.238484	GCTTAGGTATTACTGGTCATTTGCTG	60.238	42.308	0.00	0.00	0.00	4.41
1447	1517	5.823045	GCTTAGGTATTACTGGTCATTTGCT	59.177	40.000	0.00	0.00	0.00	3.91
1448	1518	5.008712	GGCTTAGGTATTACTGGTCATTTGC	59.991	44.000	0.00	0.00	0.00	3.68
1449	1519	6.357367	AGGCTTAGGTATTACTGGTCATTTG	58.643	40.000	0.00	0.00	0.00	2.32
1450	1520	6.387220	AGAGGCTTAGGTATTACTGGTCATTT	59.613	38.462	0.00	0.00	0.00	2.32
1451	1521	5.905913	AGAGGCTTAGGTATTACTGGTCATT	59.094	40.000	0.00	0.00	0.00	2.57
1452	1522	5.468658	AGAGGCTTAGGTATTACTGGTCAT	58.531	41.667	0.00	0.00	0.00	3.06
1453	1523	4.880164	AGAGGCTTAGGTATTACTGGTCA	58.120	43.478	0.00	0.00	0.00	4.02
1454	1524	8.826293	ATATAGAGGCTTAGGTATTACTGGTC	57.174	38.462	0.00	0.00	0.00	4.02
1455	1525	7.840210	GGATATAGAGGCTTAGGTATTACTGGT	59.160	40.741	0.00	0.00	0.00	4.00
1456	1526	7.013464	CGGATATAGAGGCTTAGGTATTACTGG	59.987	44.444	0.00	0.00	0.00	4.00
1457	1527	7.013464	CCGGATATAGAGGCTTAGGTATTACTG	59.987	44.444	0.00	0.00	0.00	2.74
1458	1528	7.061688	CCGGATATAGAGGCTTAGGTATTACT	58.938	42.308	0.00	0.00	0.00	2.24
1459	1529	6.238981	GCCGGATATAGAGGCTTAGGTATTAC	60.239	46.154	5.05	0.00	46.83	1.89
1460	1530	5.832060	GCCGGATATAGAGGCTTAGGTATTA	59.168	44.000	5.05	0.00	46.83	0.98
1461	1531	4.650131	GCCGGATATAGAGGCTTAGGTATT	59.350	45.833	5.05	0.00	46.83	1.89
1462	1532	4.216708	GCCGGATATAGAGGCTTAGGTAT	58.783	47.826	5.05	0.00	46.83	2.73
1463	1533	3.629087	GCCGGATATAGAGGCTTAGGTA	58.371	50.000	5.05	0.00	46.83	3.08
1464	1534	2.458620	GCCGGATATAGAGGCTTAGGT	58.541	52.381	5.05	0.00	46.83	3.08
1622	1696	4.383861	CAGCAGTCGGCCAGCAGA	62.384	66.667	2.24	0.00	46.50	4.26
1919	2004	1.271934	CCATTCACGGTGCCAAAATCA	59.728	47.619	2.51	0.00	0.00	2.57
2071	2156	2.325761	CTCCAACGAAGAACGACGAAT	58.674	47.619	0.00	0.00	45.77	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.