Multiple sequence alignment - TraesCS6D01G163900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G163900 chr6D 100.000 2744 0 0 1 2744 143083927 143081184 0.000000e+00 5068.0
1 TraesCS6D01G163900 chr6A 92.189 1754 95 14 475 2200 188252210 188250471 0.000000e+00 2442.0
2 TraesCS6D01G163900 chr6A 94.652 561 22 5 2187 2744 188250451 188249896 0.000000e+00 863.0
3 TraesCS6D01G163900 chr6A 92.138 407 16 4 80 479 188255073 188254676 6.640000e-156 560.0
4 TraesCS6D01G163900 chr6B 92.936 906 47 6 892 1797 255005411 255004523 0.000000e+00 1303.0
5 TraesCS6D01G163900 chr6B 94.033 838 32 6 80 912 255013821 255012997 0.000000e+00 1254.0
6 TraesCS6D01G163900 chr6B 93.902 82 5 0 1 82 712296697 712296778 1.030000e-24 124.0
7 TraesCS6D01G163900 chr5B 83.404 235 20 8 2283 2501 703061680 703061911 1.670000e-47 200.0
8 TraesCS6D01G163900 chr5B 91.954 87 7 0 2 88 711836998 711837084 3.710000e-24 122.0
9 TraesCS6D01G163900 chr5D 97.590 83 2 0 1 83 361358663 361358581 2.850000e-30 143.0
10 TraesCS6D01G163900 chr3D 96.341 82 3 0 1 82 455618094 455618175 4.770000e-28 135.0
11 TraesCS6D01G163900 chr3B 95.062 81 4 0 3 83 643854877 643854957 7.980000e-26 128.0
12 TraesCS6D01G163900 chr7A 93.902 82 5 0 1 82 425705273 425705192 1.030000e-24 124.0
13 TraesCS6D01G163900 chr4D 93.902 82 5 0 1 82 85589760 85589841 1.030000e-24 124.0
14 TraesCS6D01G163900 chr1D 93.902 82 5 0 1 82 453126062 453125981 1.030000e-24 124.0
15 TraesCS6D01G163900 chr4B 92.593 81 6 0 3 83 403261185 403261265 1.730000e-22 117.0
16 TraesCS6D01G163900 chr4A 92.063 63 3 2 2318 2380 617085289 617085229 1.350000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G163900 chr6D 143081184 143083927 2743 True 5068.000000 5068 100.000 1 2744 1 chr6D.!!$R1 2743
1 TraesCS6D01G163900 chr6A 188249896 188255073 5177 True 1288.333333 2442 92.993 80 2744 3 chr6A.!!$R1 2664
2 TraesCS6D01G163900 chr6B 255004523 255005411 888 True 1303.000000 1303 92.936 892 1797 1 chr6B.!!$R1 905
3 TraesCS6D01G163900 chr6B 255012997 255013821 824 True 1254.000000 1254 94.033 80 912 1 chr6B.!!$R2 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 3468 0.97401 AATGGGTGGAGCTGCAATGG 60.974 55.0 10.44 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 4825 0.03779 TGCGACAACATCATCGACCA 60.038 50.0 0.0 0.0 40.86 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.753674 AGATACATCCCTTTTTGTCTATTTGAA 57.246 29.630 0.00 0.00 0.00 2.69
56 57 8.421249 ACATCCCTTTTTGTCTATTTGAATGA 57.579 30.769 0.00 0.00 0.00 2.57
57 58 8.306761 ACATCCCTTTTTGTCTATTTGAATGAC 58.693 33.333 0.00 0.00 0.00 3.06
58 59 7.831691 TCCCTTTTTGTCTATTTGAATGACA 57.168 32.000 0.00 0.00 38.71 3.58
59 60 8.243961 TCCCTTTTTGTCTATTTGAATGACAA 57.756 30.769 13.04 13.04 45.31 3.18
60 61 8.359642 TCCCTTTTTGTCTATTTGAATGACAAG 58.640 33.333 14.93 8.82 46.72 3.16
61 62 8.143835 CCCTTTTTGTCTATTTGAATGACAAGT 58.856 33.333 14.93 0.00 46.72 3.16
62 63 9.533253 CCTTTTTGTCTATTTGAATGACAAGTT 57.467 29.630 14.93 0.00 46.72 2.66
128 129 1.324383 TGGTTTTCCTCCGGCTTTTC 58.676 50.000 0.00 0.00 41.38 2.29
175 176 2.365105 TTACCCCTCTCCCTGCGG 60.365 66.667 0.00 0.00 0.00 5.69
234 235 1.219393 GAAACCGAGCAGAGAGGGG 59.781 63.158 0.00 0.00 0.00 4.79
327 331 3.314357 ACTGTATGCATGCACATCATCAC 59.686 43.478 25.37 12.22 31.79 3.06
560 3038 7.416890 CGGATCTTGATCTTTTGGTAGTCTACT 60.417 40.741 9.85 0.00 0.00 2.57
561 3039 8.915036 GGATCTTGATCTTTTGGTAGTCTACTA 58.085 37.037 9.85 0.62 0.00 1.82
562 3040 9.738832 GATCTTGATCTTTTGGTAGTCTACTAC 57.261 37.037 11.12 11.12 46.09 2.73
882 3365 6.237942 CGCATGCACTATATTACTTCCATAGC 60.238 42.308 19.57 0.00 0.00 2.97
951 3441 2.274104 GCCGGGGGCTTATTCACA 59.726 61.111 2.18 0.00 46.69 3.58
976 3466 1.610554 GCAATGGGTGGAGCTGCAAT 61.611 55.000 10.44 0.00 33.19 3.56
978 3468 0.974010 AATGGGTGGAGCTGCAATGG 60.974 55.000 10.44 0.00 0.00 3.16
1005 3495 1.935873 CTCATCTACAACCACATGGCG 59.064 52.381 0.00 0.00 39.32 5.69
1094 3593 2.805353 CCAAGCTCCGTCGTCGTG 60.805 66.667 0.71 0.00 35.01 4.35
1375 3874 1.319614 TGCTCATCATCGTGACCGGA 61.320 55.000 9.46 0.00 33.95 5.14
1381 3880 0.963225 TCATCGTGACCGGAACAAGA 59.037 50.000 9.46 15.85 33.95 3.02
1383 3882 0.966920 ATCGTGACCGGAACAAGACT 59.033 50.000 9.46 3.93 33.95 3.24
1396 3895 2.596851 AAGACTGCCATGACCGCCT 61.597 57.895 0.00 0.00 0.00 5.52
1441 3940 3.007635 GGTAACAAGTCTTCCGGGAATG 58.992 50.000 10.44 8.19 0.00 2.67
1455 3957 2.203070 AATGCGATGCGGGAGGAC 60.203 61.111 0.00 0.00 0.00 3.85
2016 4519 3.366679 GGTGACACATCAAATGCTCCTTG 60.367 47.826 8.08 0.00 36.31 3.61
2066 4595 3.179048 GAACACAAAAGAAGTGTGGTGC 58.821 45.455 9.19 0.00 46.79 5.01
2067 4596 3.119495 GAACACAAAAGAAGTGTGGTGCT 60.119 43.478 9.19 0.00 46.79 4.40
2068 4597 2.801063 CACAAAAGAAGTGTGGTGCTG 58.199 47.619 0.00 0.00 42.20 4.41
2069 4598 1.134946 ACAAAAGAAGTGTGGTGCTGC 59.865 47.619 0.00 0.00 0.00 5.25
2070 4599 1.134753 CAAAAGAAGTGTGGTGCTGCA 59.865 47.619 0.00 0.00 0.00 4.41
2071 4600 1.696063 AAAGAAGTGTGGTGCTGCAT 58.304 45.000 5.27 0.00 0.00 3.96
2072 4601 1.696063 AAGAAGTGTGGTGCTGCATT 58.304 45.000 5.27 0.00 0.00 3.56
2073 4602 1.242076 AGAAGTGTGGTGCTGCATTC 58.758 50.000 5.27 4.37 0.00 2.67
2074 4603 0.953727 GAAGTGTGGTGCTGCATTCA 59.046 50.000 5.27 5.02 0.00 2.57
2075 4604 1.337703 GAAGTGTGGTGCTGCATTCAA 59.662 47.619 5.27 0.00 0.00 2.69
2076 4605 1.401761 AGTGTGGTGCTGCATTCAAA 58.598 45.000 5.27 0.00 0.00 2.69
2077 4606 1.965643 AGTGTGGTGCTGCATTCAAAT 59.034 42.857 5.27 0.00 0.00 2.32
2078 4607 2.366266 AGTGTGGTGCTGCATTCAAATT 59.634 40.909 5.27 0.00 0.00 1.82
2079 4608 2.733026 GTGTGGTGCTGCATTCAAATTC 59.267 45.455 5.27 0.00 0.00 2.17
2080 4609 2.629137 TGTGGTGCTGCATTCAAATTCT 59.371 40.909 5.27 0.00 0.00 2.40
2081 4610 3.069872 TGTGGTGCTGCATTCAAATTCTT 59.930 39.130 5.27 0.00 0.00 2.52
2082 4611 3.676646 GTGGTGCTGCATTCAAATTCTTC 59.323 43.478 5.27 0.00 0.00 2.87
2083 4612 3.256558 GGTGCTGCATTCAAATTCTTCC 58.743 45.455 5.27 0.00 0.00 3.46
2084 4613 3.306225 GGTGCTGCATTCAAATTCTTCCA 60.306 43.478 5.27 0.00 0.00 3.53
2085 4614 4.501071 GTGCTGCATTCAAATTCTTCCAT 58.499 39.130 5.27 0.00 0.00 3.41
2086 4615 4.933400 GTGCTGCATTCAAATTCTTCCATT 59.067 37.500 5.27 0.00 0.00 3.16
2087 4616 4.932799 TGCTGCATTCAAATTCTTCCATTG 59.067 37.500 0.00 0.00 0.00 2.82
2088 4617 4.331717 GCTGCATTCAAATTCTTCCATTGG 59.668 41.667 0.00 0.00 0.00 3.16
2089 4618 5.726397 CTGCATTCAAATTCTTCCATTGGA 58.274 37.500 0.00 0.00 0.00 3.53
2090 4619 5.481105 TGCATTCAAATTCTTCCATTGGAC 58.519 37.500 4.45 0.00 0.00 4.02
2112 4641 2.975851 GCTGCGTTCAAATTCTTCACAG 59.024 45.455 0.00 0.00 0.00 3.66
2168 4697 0.534203 CTTTACCCGTGTGTGGTGCT 60.534 55.000 0.00 0.00 36.57 4.40
2183 4712 2.100584 TGGTGCTGCGTTCAAATTCTTT 59.899 40.909 0.00 0.00 0.00 2.52
2249 4810 2.625790 TCCAAAGGTTACACATTGCACC 59.374 45.455 0.00 0.00 0.00 5.01
2259 4820 2.360350 ATTGCACCGGGCTGTCTG 60.360 61.111 6.32 0.00 45.15 3.51
2261 4822 2.410322 ATTGCACCGGGCTGTCTGAA 62.410 55.000 6.32 0.00 45.15 3.02
2262 4823 2.045926 GCACCGGGCTGTCTGAAT 60.046 61.111 6.32 0.00 40.25 2.57
2263 4824 2.401766 GCACCGGGCTGTCTGAATG 61.402 63.158 6.32 0.00 40.25 2.67
2264 4825 1.003355 CACCGGGCTGTCTGAATGT 60.003 57.895 6.32 0.00 0.00 2.71
2266 4827 1.746615 CCGGGCTGTCTGAATGTGG 60.747 63.158 0.00 0.00 0.00 4.17
2267 4828 1.003355 CGGGCTGTCTGAATGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
2290 4851 1.592064 TGATGTTGTCGCAAAGCAGA 58.408 45.000 0.00 0.00 0.00 4.26
2302 4863 3.871006 CGCAAAGCAGAGTGGTGAATATA 59.129 43.478 0.00 0.00 0.00 0.86
2306 4867 6.678900 GCAAAGCAGAGTGGTGAATATAAAGG 60.679 42.308 0.00 0.00 0.00 3.11
2406 4967 3.370104 TCTAGCTAGGCTTGCTTCTTCT 58.630 45.455 27.34 6.08 40.44 2.85
2442 5003 1.935873 CACACATGGCTTGGTCTATCG 59.064 52.381 5.31 0.00 0.00 2.92
2460 5023 9.672086 GGTCTATCGCATGATACTCTATATTTC 57.328 37.037 0.00 0.00 35.99 2.17
2464 5027 8.794308 ATCGCATGATACTCTATATTTCGATG 57.206 34.615 0.00 0.00 31.44 3.84
2575 5139 9.916397 GATCAATAATAACGTTTACAGGAACAG 57.084 33.333 5.91 0.00 0.00 3.16
2611 5175 1.821332 GAGCCTAGCCACACATGCC 60.821 63.158 0.00 0.00 0.00 4.40
2632 5196 3.909732 CTCCCTAGAGGAAGAGACACAT 58.090 50.000 0.00 0.00 46.94 3.21
2633 5197 3.888930 CTCCCTAGAGGAAGAGACACATC 59.111 52.174 0.00 0.00 46.94 3.06
2648 5212 6.041865 AGAGACACATCAAATCTAGCTATGCT 59.958 38.462 0.00 0.00 43.41 3.79
2696 5260 6.695278 CGAGGTTCAAAAGCAAAATTACAAGA 59.305 34.615 0.00 0.00 0.00 3.02
2698 5262 8.424274 AGGTTCAAAAGCAAAATTACAAGAAG 57.576 30.769 0.00 0.00 0.00 2.85
2699 5263 8.040727 AGGTTCAAAAGCAAAATTACAAGAAGT 58.959 29.630 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.753674 TTCAAATAGACAAAAAGGGATGTATCT 57.246 29.630 0.00 0.00 0.00 1.98
30 31 9.527157 TCATTCAAATAGACAAAAAGGGATGTA 57.473 29.630 0.00 0.00 0.00 2.29
31 32 8.306761 GTCATTCAAATAGACAAAAAGGGATGT 58.693 33.333 0.00 0.00 32.68 3.06
32 33 8.306038 TGTCATTCAAATAGACAAAAAGGGATG 58.694 33.333 0.00 0.00 39.15 3.51
33 34 8.421249 TGTCATTCAAATAGACAAAAAGGGAT 57.579 30.769 0.00 0.00 39.15 3.85
34 35 7.831691 TGTCATTCAAATAGACAAAAAGGGA 57.168 32.000 0.00 0.00 39.15 4.20
62 63 2.289010 GGTACTTCCTCCGTCCGAAAAA 60.289 50.000 0.00 0.00 0.00 1.94
63 64 1.273327 GGTACTTCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
64 65 0.890683 GGTACTTCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
65 66 0.967380 GGGTACTTCCTCCGTCCGAA 60.967 60.000 0.00 0.00 36.25 4.30
66 67 1.379044 GGGTACTTCCTCCGTCCGA 60.379 63.158 0.00 0.00 36.25 4.55
67 68 1.041447 ATGGGTACTTCCTCCGTCCG 61.041 60.000 0.00 0.00 36.25 4.79
68 69 0.751452 GATGGGTACTTCCTCCGTCC 59.249 60.000 0.00 0.00 36.25 4.79
69 70 1.777941 AGATGGGTACTTCCTCCGTC 58.222 55.000 0.00 0.00 36.97 4.79
70 71 2.024655 TGTAGATGGGTACTTCCTCCGT 60.025 50.000 0.00 0.00 36.25 4.69
71 72 2.361438 GTGTAGATGGGTACTTCCTCCG 59.639 54.545 0.00 0.00 36.25 4.63
72 73 3.132467 GTGTGTAGATGGGTACTTCCTCC 59.868 52.174 0.00 0.00 36.25 4.30
73 74 3.181489 CGTGTGTAGATGGGTACTTCCTC 60.181 52.174 0.00 0.00 36.25 3.71
74 75 2.758979 CGTGTGTAGATGGGTACTTCCT 59.241 50.000 0.00 0.00 36.25 3.36
75 76 2.756760 TCGTGTGTAGATGGGTACTTCC 59.243 50.000 0.00 0.00 0.00 3.46
76 77 3.734293 GCTCGTGTGTAGATGGGTACTTC 60.734 52.174 0.00 0.00 0.00 3.01
77 78 2.165845 GCTCGTGTGTAGATGGGTACTT 59.834 50.000 0.00 0.00 0.00 2.24
78 79 1.749634 GCTCGTGTGTAGATGGGTACT 59.250 52.381 0.00 0.00 0.00 2.73
292 293 1.410517 CATACAGTGAGATCGCCTGGT 59.589 52.381 15.52 5.06 0.00 4.00
461 469 4.916041 TGAGGATTGAGGTGAAGTGATT 57.084 40.909 0.00 0.00 0.00 2.57
562 3040 5.163516 CGAGACCGACCATACGTACTACG 62.164 56.522 7.07 7.07 42.50 3.51
573 3051 1.228215 TACACACCGAGACCGACCA 60.228 57.895 0.00 0.00 38.22 4.02
680 3158 1.446907 GTGCTGTCACCTTGGATCAG 58.553 55.000 0.00 0.69 37.24 2.90
681 3159 0.320683 CGTGCTGTCACCTTGGATCA 60.321 55.000 0.00 0.00 40.04 2.92
770 3248 3.591835 CAAAGTTGCCACGGCGGT 61.592 61.111 13.24 0.00 45.51 5.68
772 3250 1.442520 CATCAAAGTTGCCACGGCG 60.443 57.895 4.80 4.80 45.51 6.46
876 3359 1.385528 TGCATGCAGTGAAGCTATGG 58.614 50.000 18.46 0.00 34.99 2.74
882 3365 1.346365 GCAACATGCATGCAGTGAAG 58.654 50.000 26.69 19.04 44.26 3.02
976 3466 0.894835 TTGTAGATGAGCGACTGCCA 59.105 50.000 0.00 0.00 44.31 4.92
978 3468 1.281899 GGTTGTAGATGAGCGACTGC 58.718 55.000 0.00 0.00 43.24 4.40
1084 3583 2.874780 GCAGTAGCACGACGACGG 60.875 66.667 12.58 1.93 44.46 4.79
1086 3585 2.437343 GCAGCAGTAGCACGACGAC 61.437 63.158 0.00 0.00 45.49 4.34
1094 3593 1.079503 GGTGTTGTAGCAGCAGTAGC 58.920 55.000 0.00 0.00 42.56 3.58
1251 3750 1.542187 GGCAGTACTTCTGGTCGGGT 61.542 60.000 0.00 0.00 43.78 5.28
1305 3804 1.770324 CTTTCTTGCAGGGGGAGGT 59.230 57.895 0.00 0.00 0.00 3.85
1375 3874 1.237285 GCGGTCATGGCAGTCTTGTT 61.237 55.000 0.00 0.00 0.00 2.83
1381 3880 3.005539 AGAGGCGGTCATGGCAGT 61.006 61.111 0.00 0.00 36.77 4.40
1383 3882 4.783621 GCAGAGGCGGTCATGGCA 62.784 66.667 0.00 0.00 36.77 4.92
1396 3895 1.960040 CTGGTATGAGTGGCCGCAGA 61.960 60.000 20.59 4.13 0.00 4.26
1874 4377 4.537135 TGGGGATATTTATCGAGCACTC 57.463 45.455 0.00 0.00 33.52 3.51
1921 4424 2.224185 GCAAACGGGGTTGAGGATTTTT 60.224 45.455 0.00 0.00 0.00 1.94
1927 4430 1.805428 CTTGGCAAACGGGGTTGAGG 61.805 60.000 0.00 0.00 0.00 3.86
1972 4475 6.037720 CACCACACAACAGTAAAGTGATTACA 59.962 38.462 7.49 0.00 45.29 2.41
2016 4519 2.489722 GGTTTGGAGTTCAATGGAGAGC 59.510 50.000 0.00 0.00 34.98 4.09
2063 4592 3.916761 TGGAAGAATTTGAATGCAGCAC 58.083 40.909 0.00 0.00 0.00 4.40
2064 4593 4.811969 ATGGAAGAATTTGAATGCAGCA 57.188 36.364 0.00 0.00 0.00 4.41
2066 4595 5.579511 GTCCAATGGAAGAATTTGAATGCAG 59.420 40.000 2.31 0.00 31.38 4.41
2067 4596 5.481105 GTCCAATGGAAGAATTTGAATGCA 58.519 37.500 2.31 0.00 31.38 3.96
2068 4597 4.563976 CGTCCAATGGAAGAATTTGAATGC 59.436 41.667 9.67 0.00 33.09 3.56
2069 4598 4.563976 GCGTCCAATGGAAGAATTTGAATG 59.436 41.667 19.14 0.00 33.09 2.67
2070 4599 4.463891 AGCGTCCAATGGAAGAATTTGAAT 59.536 37.500 19.14 0.00 33.09 2.57
2071 4600 3.826157 AGCGTCCAATGGAAGAATTTGAA 59.174 39.130 19.14 0.00 33.09 2.69
2072 4601 3.191162 CAGCGTCCAATGGAAGAATTTGA 59.809 43.478 19.14 0.00 33.09 2.69
2073 4602 3.504863 CAGCGTCCAATGGAAGAATTTG 58.495 45.455 19.14 7.13 33.09 2.32
2074 4603 2.094545 GCAGCGTCCAATGGAAGAATTT 60.095 45.455 19.14 0.00 33.09 1.82
2075 4604 1.474077 GCAGCGTCCAATGGAAGAATT 59.526 47.619 19.14 0.79 33.09 2.17
2076 4605 1.098050 GCAGCGTCCAATGGAAGAAT 58.902 50.000 19.14 3.59 33.09 2.40
2077 4606 1.298157 CGCAGCGTCCAATGGAAGAA 61.298 55.000 19.14 0.00 33.09 2.52
2078 4607 1.741401 CGCAGCGTCCAATGGAAGA 60.741 57.895 19.14 0.00 33.09 2.87
2079 4608 1.577328 AACGCAGCGTCCAATGGAAG 61.577 55.000 23.22 10.91 39.99 3.46
2080 4609 1.573829 GAACGCAGCGTCCAATGGAA 61.574 55.000 23.22 0.00 39.99 3.53
2081 4610 2.031919 AACGCAGCGTCCAATGGA 59.968 55.556 23.22 0.00 39.99 3.41
2082 4611 1.851021 TTGAACGCAGCGTCCAATGG 61.851 55.000 23.22 0.00 39.99 3.16
2083 4612 0.040514 TTTGAACGCAGCGTCCAATG 60.041 50.000 20.97 0.00 33.68 2.82
2084 4613 0.881118 ATTTGAACGCAGCGTCCAAT 59.119 45.000 20.97 15.45 33.68 3.16
2085 4614 0.665835 AATTTGAACGCAGCGTCCAA 59.334 45.000 23.22 19.73 39.99 3.53
2086 4615 0.237235 GAATTTGAACGCAGCGTCCA 59.763 50.000 23.22 13.25 39.99 4.02
2087 4616 0.517316 AGAATTTGAACGCAGCGTCC 59.483 50.000 23.22 9.77 39.99 4.79
2088 4617 2.234187 GAAGAATTTGAACGCAGCGTC 58.766 47.619 23.22 15.08 39.99 5.19
2089 4618 1.601903 TGAAGAATTTGAACGCAGCGT 59.398 42.857 16.61 16.61 43.97 5.07
2090 4619 1.971962 GTGAAGAATTTGAACGCAGCG 59.028 47.619 14.82 14.82 0.00 5.18
2142 4671 4.996758 ACCACACACGGGTAAAGTAATTAC 59.003 41.667 7.57 7.57 42.68 1.89
2149 4678 0.534203 AGCACCACACACGGGTAAAG 60.534 55.000 0.00 0.00 36.72 1.85
2152 4681 2.423874 CAGCACCACACACGGGTA 59.576 61.111 0.00 0.00 36.72 3.69
2156 4685 3.506312 GAACGCAGCACCACACACG 62.506 63.158 0.00 0.00 0.00 4.49
2249 4810 1.003355 ACCACATTCAGACAGCCCG 60.003 57.895 0.00 0.00 0.00 6.13
2259 4820 3.242091 CGACAACATCATCGACCACATTC 60.242 47.826 0.00 0.00 40.86 2.67
2261 4822 2.270923 CGACAACATCATCGACCACAT 58.729 47.619 0.00 0.00 40.86 3.21
2262 4823 1.708822 CGACAACATCATCGACCACA 58.291 50.000 0.00 0.00 40.86 4.17
2263 4824 0.370273 GCGACAACATCATCGACCAC 59.630 55.000 0.00 0.00 40.86 4.16
2264 4825 0.037790 TGCGACAACATCATCGACCA 60.038 50.000 0.00 0.00 40.86 4.02
2266 4827 2.762472 CTTTGCGACAACATCATCGAC 58.238 47.619 0.00 0.00 40.86 4.20
2267 4828 1.128507 GCTTTGCGACAACATCATCGA 59.871 47.619 0.00 0.00 40.86 3.59
2290 4851 6.957631 TGATCACACCTTTATATTCACCACT 58.042 36.000 0.00 0.00 0.00 4.00
2302 4863 7.557358 TGCTACAATATCATTGATCACACCTTT 59.443 33.333 1.55 0.00 0.00 3.11
2306 4867 8.320396 AGATGCTACAATATCATTGATCACAC 57.680 34.615 1.55 0.00 0.00 3.82
2384 4945 3.966665 AGAAGAAGCAAGCCTAGCTAGAT 59.033 43.478 22.70 7.46 42.53 1.98
2406 4967 6.687901 GCCATGTGTGTCTACCCTGATATAAA 60.688 42.308 0.00 0.00 0.00 1.40
2442 5003 9.741647 TGATCATCGAAATATAGAGTATCATGC 57.258 33.333 0.00 0.00 37.82 4.06
2488 5051 7.624360 TCTCCGTGATATTTTTAGCACAATT 57.376 32.000 2.79 0.00 36.25 2.32
2573 5137 1.451567 CCTCATGACCCTGCAGCTG 60.452 63.158 10.11 10.11 0.00 4.24
2575 5139 1.748122 CACCTCATGACCCTGCAGC 60.748 63.158 8.66 0.00 0.00 5.25
2611 5175 3.374042 TGTGTCTCTTCCTCTAGGGAG 57.626 52.381 0.00 0.00 46.01 4.30
2648 5212 3.118629 AGCCTCGAATGTTGAAGCTCATA 60.119 43.478 0.00 0.00 26.84 2.15
2696 5260 4.729868 AGGAACTGCAACCATTCTTACTT 58.270 39.130 6.94 0.00 37.18 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.