Multiple sequence alignment - TraesCS6D01G163600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G163600 chr6D 100.000 4395 0 0 1 4395 142869747 142865353 0.000000e+00 8117.0
1 TraesCS6D01G163600 chr6D 98.092 629 12 0 3766 4394 7889708 7890336 0.000000e+00 1096.0
2 TraesCS6D01G163600 chr6D 81.476 637 86 19 942 1562 142926017 142925397 1.100000e-135 494.0
3 TraesCS6D01G163600 chr6D 85.230 413 30 22 1151 1561 142858092 142857709 3.190000e-106 396.0
4 TraesCS6D01G163600 chr6D 94.180 189 9 2 2527 2714 419319551 419319364 2.000000e-73 287.0
5 TraesCS6D01G163600 chr6D 82.779 331 41 13 3081 3399 142847274 142846948 9.310000e-72 281.0
6 TraesCS6D01G163600 chr6D 88.646 229 25 1 312 539 438812831 438812603 1.200000e-70 278.0
7 TraesCS6D01G163600 chr6D 81.707 328 33 14 2210 2534 142847939 142847636 9.440000e-62 248.0
8 TraesCS6D01G163600 chr6D 84.706 255 30 4 1813 2065 142848595 142848348 3.390000e-61 246.0
9 TraesCS6D01G163600 chr6D 81.759 307 28 15 2213 2517 142923141 142922861 9.510000e-57 231.0
10 TraesCS6D01G163600 chr6D 100.000 31 0 0 1086 1116 142858136 142858106 1.710000e-04 58.4
11 TraesCS6D01G163600 chr6B 94.685 1731 65 8 847 2557 248390515 248388792 0.000000e+00 2662.0
12 TraesCS6D01G163600 chr6B 94.369 1101 44 11 2693 3777 248388737 248387639 0.000000e+00 1674.0
13 TraesCS6D01G163600 chr6B 81.892 613 73 21 974 1562 248509492 248508894 2.380000e-132 483.0
14 TraesCS6D01G163600 chr6B 90.492 305 12 5 9 308 248390798 248390506 1.920000e-103 387.0
15 TraesCS6D01G163600 chr6B 84.788 401 37 11 1151 1550 248387132 248386755 8.920000e-102 381.0
16 TraesCS6D01G163600 chr6B 80.682 440 58 14 1820 2249 248374644 248374222 2.550000e-82 316.0
17 TraesCS6D01G163600 chr6B 82.317 328 31 13 2210 2534 248373742 248373439 4.360000e-65 259.0
18 TraesCS6D01G163600 chr6B 82.099 324 36 14 3091 3399 248373067 248372751 1.570000e-64 257.0
19 TraesCS6D01G163600 chr6B 81.270 315 32 13 2204 2517 248506019 248505731 3.420000e-56 230.0
20 TraesCS6D01G163600 chr6B 84.322 236 23 6 2710 2938 248373427 248373199 7.400000e-53 219.0
21 TraesCS6D01G163600 chr6B 97.619 42 1 0 1006 1047 248387226 248387185 6.100000e-09 73.1
22 TraesCS6D01G163600 chr6A 94.419 1720 73 13 850 2547 187912512 187910794 0.000000e+00 2623.0
23 TraesCS6D01G163600 chr6A 92.635 706 26 13 3083 3777 187910537 187909847 0.000000e+00 992.0
24 TraesCS6D01G163600 chr6A 84.095 547 64 12 942 1471 187975054 187974514 1.410000e-139 507.0
25 TraesCS6D01G163600 chr6A 93.870 261 8 2 2709 2961 187910795 187910535 1.920000e-103 387.0
26 TraesCS6D01G163600 chr6A 82.725 411 30 24 1151 1561 187909304 187908935 1.180000e-85 327.0
27 TraesCS6D01G163600 chr6A 82.317 328 31 13 2210 2534 187905510 187905207 4.360000e-65 259.0
28 TraesCS6D01G163600 chr6A 77.413 487 62 23 3091 3551 187904835 187904371 3.390000e-61 246.0
29 TraesCS6D01G163600 chr6A 81.329 316 34 14 2204 2518 187971932 187971641 2.640000e-57 233.0
30 TraesCS6D01G163600 chr6A 89.231 130 7 1 148 277 187912697 187912575 5.890000e-34 156.0
31 TraesCS6D01G163600 chr6A 91.011 89 7 1 1813 1901 187906247 187906160 7.720000e-23 119.0
32 TraesCS6D01G163600 chr6A 95.714 70 3 0 239 308 187912575 187912506 3.590000e-21 113.0
33 TraesCS6D01G163600 chr3D 98.548 620 8 1 3776 4395 167412019 167411401 0.000000e+00 1094.0
34 TraesCS6D01G163600 chr3D 87.500 240 26 3 304 540 278066685 278066923 1.560000e-69 274.0
35 TraesCS6D01G163600 chr3D 90.278 144 14 0 542 685 579551459 579551602 5.800000e-44 189.0
36 TraesCS6D01G163600 chr3D 89.524 105 8 2 746 847 455599484 455599380 3.570000e-26 130.0
37 TraesCS6D01G163600 chrUn 97.258 620 16 1 3776 4395 94929543 94928925 0.000000e+00 1050.0
38 TraesCS6D01G163600 chr2D 97.097 620 16 2 3776 4395 190429455 190428838 0.000000e+00 1044.0
39 TraesCS6D01G163600 chr2D 95.968 620 24 1 3776 4395 11518069 11518687 0.000000e+00 1005.0
40 TraesCS6D01G163600 chr2D 95.800 619 25 1 3777 4395 516853434 516852817 0.000000e+00 998.0
41 TraesCS6D01G163600 chr2D 95.161 186 7 2 2527 2711 272176573 272176757 4.300000e-75 292.0
42 TraesCS6D01G163600 chr2D 95.161 186 7 2 2527 2711 309243642 309243826 4.300000e-75 292.0
43 TraesCS6D01G163600 chr2D 95.161 186 7 2 2527 2711 515499277 515499461 4.300000e-75 292.0
44 TraesCS6D01G163600 chr2D 80.921 304 46 7 308 606 623352137 623352433 3.420000e-56 230.0
45 TraesCS6D01G163600 chr2D 89.524 105 9 1 746 848 119368519 119368415 9.920000e-27 132.0
46 TraesCS6D01G163600 chr7D 95.974 621 23 2 3775 4395 546757456 546758074 0.000000e+00 1007.0
47 TraesCS6D01G163600 chr7D 80.782 307 42 11 306 606 623725890 623726185 1.590000e-54 224.0
48 TraesCS6D01G163600 chr1B 95.968 620 24 1 3776 4395 349978604 349977986 0.000000e+00 1005.0
49 TraesCS6D01G163600 chr2B 95.659 622 23 2 3777 4395 186370852 186370232 0.000000e+00 996.0
50 TraesCS6D01G163600 chr2B 81.749 263 42 3 312 572 765818780 765818522 9.570000e-52 215.0
51 TraesCS6D01G163600 chr2B 88.679 106 8 3 746 847 1668015 1668120 4.610000e-25 126.0
52 TraesCS6D01G163600 chr4D 96.591 176 6 0 2535 2710 93338031 93338206 4.300000e-75 292.0
53 TraesCS6D01G163600 chr4D 94.624 186 8 2 2527 2711 344720707 344720891 2.000000e-73 287.0
54 TraesCS6D01G163600 chr4D 94.624 186 8 2 2527 2711 366191313 366191497 2.000000e-73 287.0
55 TraesCS6D01G163600 chr4D 87.281 228 27 1 312 537 381135482 381135255 4.360000e-65 259.0
56 TraesCS6D01G163600 chr4D 90.476 147 14 0 542 688 337137857 337138003 1.250000e-45 195.0
57 TraesCS6D01G163600 chr4D 89.116 147 16 0 542 688 501080331 501080185 2.700000e-42 183.0
58 TraesCS6D01G163600 chr4A 81.481 378 48 14 312 681 615701358 615700995 1.550000e-74 291.0
59 TraesCS6D01G163600 chr3B 81.039 385 55 12 309 675 618755089 618755473 1.550000e-74 291.0
60 TraesCS6D01G163600 chr3B 88.462 104 10 2 746 847 99695207 99695104 1.660000e-24 124.0
61 TraesCS6D01G163600 chr3A 89.177 231 23 1 309 537 738592918 738593148 2.000000e-73 287.0
62 TraesCS6D01G163600 chr3A 87.879 231 26 1 309 537 738671413 738671643 2.010000e-68 270.0
63 TraesCS6D01G163600 chr1A 94.624 186 8 2 2527 2711 309274367 309274551 2.000000e-73 287.0
64 TraesCS6D01G163600 chr1A 81.041 269 41 7 308 572 586757356 586757094 5.760000e-49 206.0
65 TraesCS6D01G163600 chr5B 91.787 207 11 4 2527 2732 214811993 214811792 2.590000e-72 283.0
66 TraesCS6D01G163600 chr5B 88.742 151 16 1 542 691 31179605 31179755 2.700000e-42 183.0
67 TraesCS6D01G163600 chr7B 79.534 386 68 9 309 688 145800136 145800516 9.370000e-67 265.0
68 TraesCS6D01G163600 chr7B 89.524 105 8 3 746 847 408513164 408513060 3.570000e-26 130.0
69 TraesCS6D01G163600 chr1D 87.446 231 26 3 312 540 87090584 87090355 3.370000e-66 263.0
70 TraesCS6D01G163600 chr1D 81.369 263 43 4 312 572 204802714 204802456 4.450000e-50 209.0
71 TraesCS6D01G163600 chr1D 91.429 140 12 0 542 681 117967982 117968121 4.490000e-45 193.0
72 TraesCS6D01G163600 chr1D 89.796 147 15 0 542 688 15568413 15568267 5.800000e-44 189.0
73 TraesCS6D01G163600 chr5D 84.739 249 33 3 309 555 67967056 67967301 1.220000e-60 244.0
74 TraesCS6D01G163600 chr2A 78.896 308 48 12 387 683 691122550 691122249 4.490000e-45 193.0
75 TraesCS6D01G163600 chr2A 89.320 103 8 3 746 845 682467160 682467058 4.610000e-25 126.0
76 TraesCS6D01G163600 chr5A 90.845 142 13 0 542 683 618246879 618247020 1.610000e-44 191.0
77 TraesCS6D01G163600 chr7A 88.571 105 10 2 746 848 199431974 199432078 4.610000e-25 126.0
78 TraesCS6D01G163600 chr4B 87.963 108 9 3 746 849 663456645 663456752 1.660000e-24 124.0
79 TraesCS6D01G163600 chr4B 87.273 110 10 3 746 851 572208654 572208763 5.970000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G163600 chr6D 142865353 142869747 4394 True 8117.000000 8117 100.0000 1 4395 1 chr6D.!!$R1 4394
1 TraesCS6D01G163600 chr6D 7889708 7890336 628 False 1096.000000 1096 98.0920 3766 4394 1 chr6D.!!$F1 628
2 TraesCS6D01G163600 chr6D 142922861 142926017 3156 True 362.500000 494 81.6175 942 2517 2 chr6D.!!$R6 1575
3 TraesCS6D01G163600 chr6D 142846948 142848595 1647 True 258.333333 281 83.0640 1813 3399 3 chr6D.!!$R4 1586
4 TraesCS6D01G163600 chr6B 248386755 248390798 4043 True 1035.420000 2662 92.3906 9 3777 5 chr6B.!!$R2 3768
5 TraesCS6D01G163600 chr6B 248505731 248509492 3761 True 356.500000 483 81.5810 974 2517 2 chr6B.!!$R3 1543
6 TraesCS6D01G163600 chr6B 248372751 248374644 1893 True 262.750000 316 82.3550 1820 3399 4 chr6B.!!$R1 1579
7 TraesCS6D01G163600 chr6A 187904371 187912697 8326 True 580.222222 2623 88.8150 148 3777 9 chr6A.!!$R1 3629
8 TraesCS6D01G163600 chr6A 187971641 187975054 3413 True 370.000000 507 82.7120 942 2518 2 chr6A.!!$R2 1576
9 TraesCS6D01G163600 chr3D 167411401 167412019 618 True 1094.000000 1094 98.5480 3776 4395 1 chr3D.!!$R1 619
10 TraesCS6D01G163600 chrUn 94928925 94929543 618 True 1050.000000 1050 97.2580 3776 4395 1 chrUn.!!$R1 619
11 TraesCS6D01G163600 chr2D 190428838 190429455 617 True 1044.000000 1044 97.0970 3776 4395 1 chr2D.!!$R2 619
12 TraesCS6D01G163600 chr2D 11518069 11518687 618 False 1005.000000 1005 95.9680 3776 4395 1 chr2D.!!$F1 619
13 TraesCS6D01G163600 chr2D 516852817 516853434 617 True 998.000000 998 95.8000 3777 4395 1 chr2D.!!$R3 618
14 TraesCS6D01G163600 chr7D 546757456 546758074 618 False 1007.000000 1007 95.9740 3775 4395 1 chr7D.!!$F1 620
15 TraesCS6D01G163600 chr1B 349977986 349978604 618 True 1005.000000 1005 95.9680 3776 4395 1 chr1B.!!$R1 619
16 TraesCS6D01G163600 chr2B 186370232 186370852 620 True 996.000000 996 95.6590 3777 4395 1 chr2B.!!$R1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 486 0.108329 GGCGCCACACTACACTATGT 60.108 55.0 24.80 0.0 0.00 2.29 F
764 820 0.178975 CTTTGTGTTGGGGGCCACTA 60.179 55.0 7.61 0.0 30.78 2.74 F
1642 1744 0.101219 GCCGCCTCACATCATTTTCC 59.899 55.0 0.00 0.0 0.00 3.13 F
2560 11518 2.249309 AACATACTCCCTCCGTTCCT 57.751 50.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 1535 0.034670 AAACCAGGGATGCTCAGCTC 60.035 55.000 0.0 0.0 0.0 4.09 R
2694 11652 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.0 0.0 0.0 3.36 R
2695 11653 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.0 0.0 0.0 3.62 R
3678 12702 0.252479 CTGCCTGAGGAAGATGCACT 59.748 55.000 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.122396 GGATATGATAATTGGAGTTGCGGTC 59.878 44.000 0.00 0.00 0.00 4.79
48 49 3.270027 TGATAATTGGAGTTGCGGTCAG 58.730 45.455 0.00 0.00 0.00 3.51
82 83 1.670791 AGAGCTCGAGCCTAGTGTAC 58.329 55.000 32.94 13.95 43.38 2.90
100 103 3.064987 CTACACGGAGCGGGTGGAG 62.065 68.421 0.00 6.29 44.26 3.86
121 124 2.425592 GCCCAGCAAAACCAACCC 59.574 61.111 0.00 0.00 0.00 4.11
123 126 2.733945 CCAGCAAAACCAACCCCG 59.266 61.111 0.00 0.00 0.00 5.73
142 145 2.849007 CGCGCCTGAATATCAGCG 59.151 61.111 0.00 15.09 42.98 5.18
214 220 5.487581 CATTCGATCGAATCACTTTCTGTG 58.512 41.667 34.40 20.00 42.30 3.66
215 221 3.511699 TCGATCGAATCACTTTCTGTGG 58.488 45.455 16.99 0.00 46.20 4.17
216 222 3.056821 TCGATCGAATCACTTTCTGTGGT 60.057 43.478 16.99 0.00 46.20 4.16
223 229 4.918810 ATCACTTTCTGTGGTTGGTTTC 57.081 40.909 0.00 0.00 46.20 2.78
224 230 3.020984 TCACTTTCTGTGGTTGGTTTCC 58.979 45.455 0.00 0.00 46.20 3.13
225 231 2.757868 CACTTTCTGTGGTTGGTTTCCA 59.242 45.455 0.00 0.00 42.68 3.53
319 375 3.842732 CCAACTCGGGGTAAATTTGAC 57.157 47.619 0.00 0.00 0.00 3.18
320 376 3.150767 CCAACTCGGGGTAAATTTGACA 58.849 45.455 0.00 0.00 0.00 3.58
321 377 3.570550 CCAACTCGGGGTAAATTTGACAA 59.429 43.478 0.00 0.00 0.00 3.18
322 378 4.219725 CCAACTCGGGGTAAATTTGACAAT 59.780 41.667 0.00 0.00 0.00 2.71
323 379 5.279256 CCAACTCGGGGTAAATTTGACAATT 60.279 40.000 0.00 0.00 33.72 2.32
324 380 6.220201 CAACTCGGGGTAAATTTGACAATTT 58.780 36.000 0.00 0.00 43.67 1.82
325 381 6.413783 ACTCGGGGTAAATTTGACAATTTT 57.586 33.333 11.59 11.59 39.19 1.82
326 382 7.527568 ACTCGGGGTAAATTTGACAATTTTA 57.472 32.000 9.97 9.97 39.19 1.52
327 383 7.953752 ACTCGGGGTAAATTTGACAATTTTAA 58.046 30.769 13.94 2.16 39.19 1.52
328 384 8.590204 ACTCGGGGTAAATTTGACAATTTTAAT 58.410 29.630 13.94 0.00 39.19 1.40
329 385 8.989653 TCGGGGTAAATTTGACAATTTTAATC 57.010 30.769 13.94 10.46 39.19 1.75
330 386 8.808092 TCGGGGTAAATTTGACAATTTTAATCT 58.192 29.630 13.94 0.00 39.19 2.40
392 448 7.873739 AAAAATCACTCGGCTAATCTTTTTG 57.126 32.000 0.00 0.00 0.00 2.44
393 449 6.817765 AAATCACTCGGCTAATCTTTTTGA 57.182 33.333 0.00 0.00 0.00 2.69
394 450 6.817765 AATCACTCGGCTAATCTTTTTGAA 57.182 33.333 0.00 0.00 0.00 2.69
395 451 7.396540 AATCACTCGGCTAATCTTTTTGAAT 57.603 32.000 0.00 0.00 0.00 2.57
396 452 6.182039 TCACTCGGCTAATCTTTTTGAATG 57.818 37.500 0.00 0.00 0.00 2.67
397 453 5.123820 TCACTCGGCTAATCTTTTTGAATGG 59.876 40.000 0.00 0.00 0.00 3.16
398 454 4.142381 ACTCGGCTAATCTTTTTGAATGGC 60.142 41.667 0.00 0.00 0.00 4.40
399 455 3.108144 CGGCTAATCTTTTTGAATGGCG 58.892 45.455 0.00 0.00 36.05 5.69
400 456 3.427503 CGGCTAATCTTTTTGAATGGCGT 60.428 43.478 0.00 0.00 36.93 5.68
401 457 4.105486 GGCTAATCTTTTTGAATGGCGTC 58.895 43.478 0.00 0.00 0.00 5.19
402 458 4.105486 GCTAATCTTTTTGAATGGCGTCC 58.895 43.478 0.00 0.00 0.00 4.79
403 459 2.919666 ATCTTTTTGAATGGCGTCCG 57.080 45.000 0.00 0.00 0.00 4.79
404 460 1.885560 TCTTTTTGAATGGCGTCCGA 58.114 45.000 0.00 0.00 0.00 4.55
405 461 1.533731 TCTTTTTGAATGGCGTCCGAC 59.466 47.619 0.00 0.00 0.00 4.79
406 462 1.265635 CTTTTTGAATGGCGTCCGACA 59.734 47.619 0.00 0.00 37.65 4.35
407 463 0.589223 TTTTGAATGGCGTCCGACAC 59.411 50.000 0.00 0.00 35.10 3.67
420 476 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
421 477 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
422 478 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
423 479 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
424 480 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
425 481 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
426 482 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
427 483 0.245539 GAAGGCGCCACACTACACTA 59.754 55.000 31.54 0.00 0.00 2.74
428 484 0.902531 AAGGCGCCACACTACACTAT 59.097 50.000 31.54 0.00 0.00 2.12
429 485 0.175760 AGGCGCCACACTACACTATG 59.824 55.000 31.54 0.00 0.00 2.23
430 486 0.108329 GGCGCCACACTACACTATGT 60.108 55.000 24.80 0.00 0.00 2.29
431 487 1.135527 GGCGCCACACTACACTATGTA 59.864 52.381 24.80 0.00 0.00 2.29
432 488 2.417651 GGCGCCACACTACACTATGTAA 60.418 50.000 24.80 0.00 31.67 2.41
433 489 2.601763 GCGCCACACTACACTATGTAAC 59.398 50.000 0.00 0.00 31.67 2.50
434 490 2.850060 CGCCACACTACACTATGTAACG 59.150 50.000 0.00 0.00 31.67 3.18
435 491 2.601763 GCCACACTACACTATGTAACGC 59.398 50.000 0.00 0.00 31.67 4.84
436 492 3.184541 CCACACTACACTATGTAACGCC 58.815 50.000 0.00 0.00 31.67 5.68
437 493 3.119245 CCACACTACACTATGTAACGCCT 60.119 47.826 0.00 0.00 31.67 5.52
438 494 3.857665 CACACTACACTATGTAACGCCTG 59.142 47.826 0.00 0.00 31.67 4.85
439 495 3.760151 ACACTACACTATGTAACGCCTGA 59.240 43.478 0.00 0.00 31.67 3.86
440 496 4.103357 CACTACACTATGTAACGCCTGAC 58.897 47.826 0.00 0.00 31.67 3.51
441 497 3.760151 ACTACACTATGTAACGCCTGACA 59.240 43.478 0.00 0.00 31.67 3.58
442 498 3.232213 ACACTATGTAACGCCTGACAG 57.768 47.619 0.00 0.00 0.00 3.51
443 499 2.823747 ACACTATGTAACGCCTGACAGA 59.176 45.455 3.32 0.00 0.00 3.41
444 500 3.447586 ACACTATGTAACGCCTGACAGAT 59.552 43.478 3.32 0.00 0.00 2.90
445 501 4.643334 ACACTATGTAACGCCTGACAGATA 59.357 41.667 3.32 0.00 0.00 1.98
446 502 5.215903 CACTATGTAACGCCTGACAGATAG 58.784 45.833 3.32 4.01 0.00 2.08
447 503 3.735237 ATGTAACGCCTGACAGATAGG 57.265 47.619 3.32 0.00 38.39 2.57
453 509 3.875838 CCTGACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
454 510 1.032794 CCTGACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
455 511 1.269309 CCTGACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
487 543 3.712907 GCACCCTGGACCGCCTAA 61.713 66.667 0.00 0.00 34.31 2.69
488 544 3.074281 CACCCTGGACCGCCTAAA 58.926 61.111 0.00 0.00 34.31 1.85
489 545 1.377229 CACCCTGGACCGCCTAAAA 59.623 57.895 0.00 0.00 34.31 1.52
490 546 0.250989 CACCCTGGACCGCCTAAAAA 60.251 55.000 0.00 0.00 34.31 1.94
491 547 0.702316 ACCCTGGACCGCCTAAAAAT 59.298 50.000 0.00 0.00 34.31 1.82
492 548 1.076513 ACCCTGGACCGCCTAAAAATT 59.923 47.619 0.00 0.00 34.31 1.82
493 549 2.309458 ACCCTGGACCGCCTAAAAATTA 59.691 45.455 0.00 0.00 34.31 1.40
494 550 2.686405 CCCTGGACCGCCTAAAAATTAC 59.314 50.000 0.00 0.00 34.31 1.89
495 551 3.617284 CCTGGACCGCCTAAAAATTACT 58.383 45.455 0.00 0.00 34.31 2.24
496 552 4.384427 CCCTGGACCGCCTAAAAATTACTA 60.384 45.833 0.00 0.00 34.31 1.82
497 553 5.187687 CCTGGACCGCCTAAAAATTACTAA 58.812 41.667 0.00 0.00 34.31 2.24
498 554 5.296035 CCTGGACCGCCTAAAAATTACTAAG 59.704 44.000 0.00 0.00 34.31 2.18
499 555 5.807909 TGGACCGCCTAAAAATTACTAAGT 58.192 37.500 0.00 0.00 34.31 2.24
500 556 5.876460 TGGACCGCCTAAAAATTACTAAGTC 59.124 40.000 0.00 0.00 34.31 3.01
501 557 5.876460 GGACCGCCTAAAAATTACTAAGTCA 59.124 40.000 0.00 0.00 0.00 3.41
502 558 6.036844 GGACCGCCTAAAAATTACTAAGTCAG 59.963 42.308 0.00 0.00 0.00 3.51
503 559 6.470278 ACCGCCTAAAAATTACTAAGTCAGT 58.530 36.000 0.00 0.00 41.62 3.41
504 560 6.370718 ACCGCCTAAAAATTACTAAGTCAGTG 59.629 38.462 0.00 0.00 38.24 3.66
505 561 6.370718 CCGCCTAAAAATTACTAAGTCAGTGT 59.629 38.462 0.00 0.00 38.24 3.55
506 562 7.234384 CGCCTAAAAATTACTAAGTCAGTGTG 58.766 38.462 0.00 0.00 38.24 3.82
507 563 7.021790 GCCTAAAAATTACTAAGTCAGTGTGC 58.978 38.462 0.00 0.00 38.24 4.57
508 564 7.308348 GCCTAAAAATTACTAAGTCAGTGTGCA 60.308 37.037 0.00 0.00 38.24 4.57
509 565 8.564574 CCTAAAAATTACTAAGTCAGTGTGCAA 58.435 33.333 0.00 0.00 38.24 4.08
510 566 9.382244 CTAAAAATTACTAAGTCAGTGTGCAAC 57.618 33.333 0.00 0.00 38.24 4.17
511 567 5.591643 AATTACTAAGTCAGTGTGCAACG 57.408 39.130 0.00 0.00 42.39 4.10
519 575 3.248029 GTGTGCAACGCCTGAGAG 58.752 61.111 0.00 0.00 42.76 3.20
520 576 2.666190 TGTGCAACGCCTGAGAGC 60.666 61.111 0.00 0.00 42.39 4.09
521 577 2.358003 GTGCAACGCCTGAGAGCT 60.358 61.111 0.00 0.00 0.00 4.09
522 578 1.079819 GTGCAACGCCTGAGAGCTA 60.080 57.895 0.00 0.00 0.00 3.32
523 579 1.080995 GTGCAACGCCTGAGAGCTAG 61.081 60.000 0.00 0.00 0.00 3.42
524 580 1.520342 GCAACGCCTGAGAGCTAGG 60.520 63.158 0.00 0.00 38.39 3.02
529 585 3.926003 CCTGAGAGCTAGGCGTCA 58.074 61.111 0.00 0.00 0.00 4.35
530 586 1.435515 CCTGAGAGCTAGGCGTCAC 59.564 63.158 0.00 0.00 0.00 3.67
531 587 1.315981 CCTGAGAGCTAGGCGTCACA 61.316 60.000 0.00 0.00 0.00 3.58
532 588 0.179150 CTGAGAGCTAGGCGTCACAC 60.179 60.000 0.00 0.00 0.00 3.82
533 589 0.609406 TGAGAGCTAGGCGTCACACT 60.609 55.000 0.00 0.00 0.00 3.55
534 590 1.339727 TGAGAGCTAGGCGTCACACTA 60.340 52.381 0.00 0.00 0.00 2.74
535 591 1.950909 GAGAGCTAGGCGTCACACTAT 59.049 52.381 0.00 0.00 0.00 2.12
536 592 3.139850 GAGAGCTAGGCGTCACACTATA 58.860 50.000 0.00 0.00 0.00 1.31
537 593 2.879646 AGAGCTAGGCGTCACACTATAC 59.120 50.000 0.00 0.00 0.00 1.47
538 594 2.617308 GAGCTAGGCGTCACACTATACA 59.383 50.000 0.00 0.00 0.00 2.29
539 595 2.619177 AGCTAGGCGTCACACTATACAG 59.381 50.000 0.00 0.00 0.00 2.74
540 596 2.287668 GCTAGGCGTCACACTATACAGG 60.288 54.545 0.00 0.00 0.00 4.00
541 597 2.139323 AGGCGTCACACTATACAGGA 57.861 50.000 0.00 0.00 0.00 3.86
542 598 2.025155 AGGCGTCACACTATACAGGAG 58.975 52.381 0.00 0.00 0.00 3.69
543 599 1.749634 GGCGTCACACTATACAGGAGT 59.250 52.381 0.00 0.00 0.00 3.85
545 601 2.798680 CGTCACACTATACAGGAGTGC 58.201 52.381 2.76 0.00 46.85 4.40
546 602 2.163613 CGTCACACTATACAGGAGTGCA 59.836 50.000 2.76 0.00 46.85 4.57
547 603 3.366985 CGTCACACTATACAGGAGTGCAA 60.367 47.826 2.76 0.00 46.85 4.08
548 604 3.927142 GTCACACTATACAGGAGTGCAAC 59.073 47.826 2.76 0.00 46.85 4.17
549 605 2.923655 CACACTATACAGGAGTGCAACG 59.076 50.000 2.76 0.00 46.85 4.10
550 606 1.927174 CACTATACAGGAGTGCAACGC 59.073 52.381 0.00 0.00 45.86 4.84
557 613 4.504132 GAGTGCAACGCCTAGAGG 57.496 61.111 0.00 0.00 45.86 3.69
567 623 2.521950 CCTAGAGGCTGGGCGCTA 60.522 66.667 7.64 7.30 39.13 4.26
568 624 2.731374 CTAGAGGCTGGGCGCTAC 59.269 66.667 7.64 0.66 39.13 3.58
569 625 2.043349 TAGAGGCTGGGCGCTACA 60.043 61.111 7.64 6.23 39.13 2.74
570 626 2.356818 CTAGAGGCTGGGCGCTACAC 62.357 65.000 7.64 2.41 39.13 2.90
571 627 2.856039 TAGAGGCTGGGCGCTACACT 62.856 60.000 7.64 1.29 39.13 3.55
572 628 4.087892 AGGCTGGGCGCTACACTG 62.088 66.667 7.64 0.97 39.13 3.66
573 629 4.394712 GGCTGGGCGCTACACTGT 62.395 66.667 7.64 0.00 39.13 3.55
574 630 2.577059 GCTGGGCGCTACACTGTA 59.423 61.111 7.64 0.00 35.14 2.74
575 631 1.144057 GCTGGGCGCTACACTGTAT 59.856 57.895 7.64 0.00 35.14 2.29
576 632 0.387929 GCTGGGCGCTACACTGTATA 59.612 55.000 7.64 0.00 35.14 1.47
577 633 1.603172 GCTGGGCGCTACACTGTATAG 60.603 57.143 7.64 0.00 35.14 1.31
578 634 1.681793 CTGGGCGCTACACTGTATAGT 59.318 52.381 7.64 0.00 37.75 2.12
590 646 4.592485 ACTGTATAGTGTGATGCCTAGC 57.408 45.455 0.00 0.00 35.34 3.42
591 647 4.219115 ACTGTATAGTGTGATGCCTAGCT 58.781 43.478 0.00 0.00 35.34 3.32
592 648 4.279671 ACTGTATAGTGTGATGCCTAGCTC 59.720 45.833 0.00 0.00 35.34 4.09
593 649 4.474394 TGTATAGTGTGATGCCTAGCTCT 58.526 43.478 0.00 0.00 0.00 4.09
594 650 4.279420 TGTATAGTGTGATGCCTAGCTCTG 59.721 45.833 0.00 0.00 0.00 3.35
595 651 1.857965 AGTGTGATGCCTAGCTCTGA 58.142 50.000 0.00 0.00 0.00 3.27
596 652 1.755959 AGTGTGATGCCTAGCTCTGAG 59.244 52.381 0.00 0.00 0.00 3.35
597 653 1.117994 TGTGATGCCTAGCTCTGAGG 58.882 55.000 6.83 0.00 37.12 3.86
602 658 2.416678 CCTAGCTCTGAGGCGCTG 59.583 66.667 7.64 0.00 37.05 5.18
603 659 2.279385 CTAGCTCTGAGGCGCTGC 60.279 66.667 7.64 0.00 37.05 5.25
604 660 3.070576 TAGCTCTGAGGCGCTGCA 61.071 61.111 7.64 4.82 37.05 4.41
605 661 3.362399 TAGCTCTGAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
607 663 3.117171 CTCTGAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
608 664 3.586461 CTCTGAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
609 665 3.420606 CTGAGGCGCTGCACACTG 61.421 66.667 7.64 0.00 0.00 3.66
610 666 4.994471 TGAGGCGCTGCACACTGG 62.994 66.667 7.64 0.00 0.00 4.00
614 670 3.969802 GCGCTGCACACTGGCTTT 61.970 61.111 0.00 0.00 34.04 3.51
615 671 2.050714 CGCTGCACACTGGCTTTG 60.051 61.111 0.00 0.00 34.04 2.77
616 672 2.837883 CGCTGCACACTGGCTTTGT 61.838 57.895 0.00 0.00 34.04 2.83
617 673 1.506309 CGCTGCACACTGGCTTTGTA 61.506 55.000 0.00 0.00 34.04 2.41
618 674 0.667993 GCTGCACACTGGCTTTGTAA 59.332 50.000 0.00 0.00 34.04 2.41
619 675 1.066908 GCTGCACACTGGCTTTGTAAA 59.933 47.619 0.00 0.00 34.04 2.01
620 676 2.288395 GCTGCACACTGGCTTTGTAAAT 60.288 45.455 0.00 0.00 34.04 1.40
621 677 3.799917 GCTGCACACTGGCTTTGTAAATT 60.800 43.478 0.00 0.00 34.04 1.82
622 678 4.370917 CTGCACACTGGCTTTGTAAATTT 58.629 39.130 0.00 0.00 34.04 1.82
623 679 4.367450 TGCACACTGGCTTTGTAAATTTC 58.633 39.130 0.00 0.00 34.04 2.17
624 680 3.425193 GCACACTGGCTTTGTAAATTTCG 59.575 43.478 0.00 0.00 0.00 3.46
625 681 3.980775 CACACTGGCTTTGTAAATTTCGG 59.019 43.478 0.00 0.00 0.00 4.30
626 682 3.886505 ACACTGGCTTTGTAAATTTCGGA 59.113 39.130 0.00 0.00 0.00 4.55
627 683 4.522789 ACACTGGCTTTGTAAATTTCGGAT 59.477 37.500 0.00 0.00 0.00 4.18
628 684 5.095490 CACTGGCTTTGTAAATTTCGGATC 58.905 41.667 0.00 0.00 0.00 3.36
629 685 4.764823 ACTGGCTTTGTAAATTTCGGATCA 59.235 37.500 0.00 0.00 0.00 2.92
630 686 5.054390 TGGCTTTGTAAATTTCGGATCAC 57.946 39.130 0.00 0.00 0.00 3.06
631 687 4.520874 TGGCTTTGTAAATTTCGGATCACA 59.479 37.500 0.00 0.00 0.00 3.58
632 688 4.857037 GGCTTTGTAAATTTCGGATCACAC 59.143 41.667 0.00 0.00 0.00 3.82
633 689 4.553429 GCTTTGTAAATTTCGGATCACACG 59.447 41.667 0.00 0.00 0.00 4.49
634 690 4.671880 TTGTAAATTTCGGATCACACGG 57.328 40.909 0.00 0.00 0.00 4.94
635 691 3.004171 TGTAAATTTCGGATCACACGGG 58.996 45.455 0.00 0.00 0.00 5.28
636 692 2.194201 AAATTTCGGATCACACGGGT 57.806 45.000 0.00 0.00 0.00 5.28
637 693 1.448985 AATTTCGGATCACACGGGTG 58.551 50.000 12.84 12.84 46.66 4.61
638 694 1.024579 ATTTCGGATCACACGGGTGC 61.025 55.000 14.50 0.00 44.87 5.01
639 695 3.925362 TTCGGATCACACGGGTGCG 62.925 63.158 14.50 11.68 44.87 5.34
640 696 4.429212 CGGATCACACGGGTGCGA 62.429 66.667 14.50 0.00 44.87 5.10
641 697 2.813908 GGATCACACGGGTGCGAC 60.814 66.667 14.50 6.54 44.87 5.19
642 698 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
672 728 2.726555 GTGCAACGCATATCTGTCAG 57.273 50.000 0.00 0.00 41.91 3.51
673 729 1.328680 GTGCAACGCATATCTGTCAGG 59.671 52.381 0.00 0.00 41.91 3.86
674 730 0.305922 GCAACGCATATCTGTCAGGC 59.694 55.000 0.00 0.00 0.00 4.85
675 731 1.655484 CAACGCATATCTGTCAGGCA 58.345 50.000 0.00 0.00 0.00 4.75
676 732 2.216046 CAACGCATATCTGTCAGGCAT 58.784 47.619 0.00 0.00 0.00 4.40
677 733 2.615447 CAACGCATATCTGTCAGGCATT 59.385 45.455 0.00 0.00 0.00 3.56
678 734 2.216046 ACGCATATCTGTCAGGCATTG 58.784 47.619 0.00 0.00 0.00 2.82
679 735 1.069432 CGCATATCTGTCAGGCATTGC 60.069 52.381 0.00 0.00 0.00 3.56
680 736 1.951602 GCATATCTGTCAGGCATTGCA 59.048 47.619 11.39 0.00 0.00 4.08
681 737 2.557056 GCATATCTGTCAGGCATTGCAT 59.443 45.455 11.39 0.00 0.00 3.96
682 738 3.754850 GCATATCTGTCAGGCATTGCATA 59.245 43.478 11.39 0.00 0.00 3.14
683 739 4.216902 GCATATCTGTCAGGCATTGCATAA 59.783 41.667 11.39 0.00 0.00 1.90
684 740 5.105877 GCATATCTGTCAGGCATTGCATAAT 60.106 40.000 11.39 0.00 0.00 1.28
685 741 6.094464 GCATATCTGTCAGGCATTGCATAATA 59.906 38.462 11.39 0.00 0.00 0.98
686 742 7.201794 GCATATCTGTCAGGCATTGCATAATAT 60.202 37.037 11.39 0.86 0.00 1.28
687 743 9.333724 CATATCTGTCAGGCATTGCATAATATA 57.666 33.333 11.39 0.24 0.00 0.86
724 780 4.283678 CACTCTATAGTGTGACGCTTAGC 58.716 47.826 24.27 0.00 46.76 3.09
725 781 4.035792 CACTCTATAGTGTGACGCTTAGCT 59.964 45.833 24.27 0.00 46.76 3.32
726 782 4.273969 ACTCTATAGTGTGACGCTTAGCTC 59.726 45.833 3.14 0.00 33.57 4.09
727 783 4.452825 TCTATAGTGTGACGCTTAGCTCT 58.547 43.478 3.14 0.00 0.00 4.09
728 784 2.921634 TAGTGTGACGCTTAGCTCTG 57.078 50.000 3.14 0.00 0.00 3.35
729 785 1.248486 AGTGTGACGCTTAGCTCTGA 58.752 50.000 1.76 0.00 0.00 3.27
730 786 1.201181 AGTGTGACGCTTAGCTCTGAG 59.799 52.381 1.76 0.00 0.00 3.35
731 787 0.528017 TGTGACGCTTAGCTCTGAGG 59.472 55.000 6.83 0.00 0.00 3.86
732 788 0.804156 GTGACGCTTAGCTCTGAGGC 60.804 60.000 6.83 0.19 0.00 4.70
734 790 2.959071 CGCTTAGCTCTGAGGCGC 60.959 66.667 11.87 0.00 39.42 6.53
735 791 2.498726 GCTTAGCTCTGAGGCGCT 59.501 61.111 7.64 0.83 40.15 5.92
736 792 1.882167 GCTTAGCTCTGAGGCGCTG 60.882 63.158 7.64 0.00 37.05 5.18
737 793 1.882167 CTTAGCTCTGAGGCGCTGC 60.882 63.158 7.64 0.00 37.05 5.25
738 794 2.569072 CTTAGCTCTGAGGCGCTGCA 62.569 60.000 7.64 4.82 37.05 4.41
739 795 2.842394 TTAGCTCTGAGGCGCTGCAC 62.842 60.000 7.64 0.00 37.05 4.57
741 797 3.117171 CTCTGAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
742 798 3.586461 CTCTGAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
743 799 3.420606 CTGAGGCGCTGCACACTG 61.421 66.667 7.64 0.00 0.00 3.66
744 800 3.871248 CTGAGGCGCTGCACACTGA 62.871 63.158 7.64 0.00 0.00 3.41
745 801 3.418068 GAGGCGCTGCACACTGAC 61.418 66.667 7.64 0.00 0.00 3.51
746 802 3.873026 GAGGCGCTGCACACTGACT 62.873 63.158 7.64 0.00 0.00 3.41
747 803 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
748 804 2.546494 GGCGCTGCACACTGACTTT 61.546 57.895 7.64 0.00 0.00 2.66
749 805 1.369689 GCGCTGCACACTGACTTTG 60.370 57.895 0.00 0.00 0.00 2.77
750 806 2.016961 CGCTGCACACTGACTTTGT 58.983 52.632 0.00 0.00 0.00 2.83
751 807 0.316442 CGCTGCACACTGACTTTGTG 60.316 55.000 0.00 0.00 46.05 3.33
753 809 1.133025 GCTGCACACTGACTTTGTGTT 59.867 47.619 4.53 0.00 45.11 3.32
754 810 2.789208 CTGCACACTGACTTTGTGTTG 58.211 47.619 4.53 0.00 45.11 3.33
755 811 1.472082 TGCACACTGACTTTGTGTTGG 59.528 47.619 4.53 0.00 45.11 3.77
756 812 1.202290 GCACACTGACTTTGTGTTGGG 60.202 52.381 4.53 0.00 45.11 4.12
757 813 1.405105 CACACTGACTTTGTGTTGGGG 59.595 52.381 0.00 0.00 45.11 4.96
758 814 1.032014 CACTGACTTTGTGTTGGGGG 58.968 55.000 0.00 0.00 0.00 5.40
759 815 0.755327 ACTGACTTTGTGTTGGGGGC 60.755 55.000 0.00 0.00 0.00 5.80
760 816 1.456705 TGACTTTGTGTTGGGGGCC 60.457 57.895 0.00 0.00 0.00 5.80
761 817 1.456705 GACTTTGTGTTGGGGGCCA 60.457 57.895 4.39 0.00 0.00 5.36
762 818 1.744320 GACTTTGTGTTGGGGGCCAC 61.744 60.000 4.39 0.17 30.78 5.01
763 819 1.457455 CTTTGTGTTGGGGGCCACT 60.457 57.895 7.61 0.00 30.78 4.00
764 820 0.178975 CTTTGTGTTGGGGGCCACTA 60.179 55.000 7.61 0.00 30.78 2.74
765 821 0.261991 TTTGTGTTGGGGGCCACTAA 59.738 50.000 7.61 0.28 30.78 2.24
766 822 0.261991 TTGTGTTGGGGGCCACTAAA 59.738 50.000 4.87 0.00 30.78 1.85
767 823 0.261991 TGTGTTGGGGGCCACTAAAA 59.738 50.000 4.87 0.00 30.78 1.52
768 824 1.343075 TGTGTTGGGGGCCACTAAAAA 60.343 47.619 4.87 0.00 30.78 1.94
828 884 5.703978 TGAAATGATTTCATCCACACGTT 57.296 34.783 16.04 0.00 44.21 3.99
829 885 6.809630 TGAAATGATTTCATCCACACGTTA 57.190 33.333 16.04 0.00 44.21 3.18
830 886 7.208225 TGAAATGATTTCATCCACACGTTAA 57.792 32.000 16.04 0.00 44.21 2.01
831 887 7.652727 TGAAATGATTTCATCCACACGTTAAA 58.347 30.769 16.04 0.00 44.21 1.52
832 888 8.138074 TGAAATGATTTCATCCACACGTTAAAA 58.862 29.630 16.04 0.00 44.21 1.52
833 889 9.139174 GAAATGATTTCATCCACACGTTAAAAT 57.861 29.630 12.73 0.00 39.45 1.82
834 890 9.487790 AAATGATTTCATCCACACGTTAAAATT 57.512 25.926 0.00 0.00 35.10 1.82
835 891 7.865875 TGATTTCATCCACACGTTAAAATTG 57.134 32.000 0.00 0.00 0.00 2.32
836 892 7.429633 TGATTTCATCCACACGTTAAAATTGT 58.570 30.769 0.00 0.00 0.00 2.71
837 893 7.593273 TGATTTCATCCACACGTTAAAATTGTC 59.407 33.333 0.00 0.00 0.00 3.18
838 894 6.378710 TTCATCCACACGTTAAAATTGTCA 57.621 33.333 0.00 0.00 0.00 3.58
839 895 6.378710 TCATCCACACGTTAAAATTGTCAA 57.621 33.333 0.00 0.00 0.00 3.18
840 896 6.796426 TCATCCACACGTTAAAATTGTCAAA 58.204 32.000 0.00 0.00 0.00 2.69
841 897 7.429633 TCATCCACACGTTAAAATTGTCAAAT 58.570 30.769 0.00 0.00 0.00 2.32
842 898 7.923344 TCATCCACACGTTAAAATTGTCAAATT 59.077 29.630 0.00 0.00 37.61 1.82
843 899 8.547069 CATCCACACGTTAAAATTGTCAAATTT 58.453 29.630 4.14 4.14 45.81 1.82
844 900 7.899974 TCCACACGTTAAAATTGTCAAATTTG 58.100 30.769 12.15 12.15 43.63 2.32
845 901 6.626882 CCACACGTTAAAATTGTCAAATTTGC 59.373 34.615 13.54 9.16 43.63 3.68
846 902 6.626882 CACACGTTAAAATTGTCAAATTTGCC 59.373 34.615 13.54 2.32 43.63 4.52
847 903 6.132724 CACGTTAAAATTGTCAAATTTGCCC 58.867 36.000 13.54 6.98 43.63 5.36
848 904 5.237561 ACGTTAAAATTGTCAAATTTGCCCC 59.762 36.000 13.54 4.58 43.63 5.80
849 905 5.237344 CGTTAAAATTGTCAAATTTGCCCCA 59.763 36.000 13.54 7.06 43.63 4.96
850 906 6.238484 CGTTAAAATTGTCAAATTTGCCCCAA 60.238 34.615 13.54 14.68 43.63 4.12
868 924 2.424601 CCAACTCGGTCCGTACTTATCA 59.575 50.000 11.88 0.00 0.00 2.15
894 950 1.355720 CCCTTGTCCCATCCAGACTTT 59.644 52.381 0.00 0.00 35.21 2.66
1443 1534 0.836400 ACCTGGATGTCCTCAACGGT 60.836 55.000 0.00 0.00 36.82 4.83
1444 1535 0.391661 CCTGGATGTCCTCAACGGTG 60.392 60.000 0.00 0.00 36.82 4.94
1445 1536 0.608130 CTGGATGTCCTCAACGGTGA 59.392 55.000 1.69 1.69 36.82 4.02
1642 1744 0.101219 GCCGCCTCACATCATTTTCC 59.899 55.000 0.00 0.00 0.00 3.13
1890 1992 5.065988 CACAAATATAACAGGTAGGGTGTGC 59.934 44.000 0.00 0.00 0.00 4.57
1993 2099 8.883954 TTCTTCTCATATCATGTCACAAGATC 57.116 34.615 0.00 0.00 0.00 2.75
2043 2214 7.082700 TGTGCATTACTAATGTGGTTATGTG 57.917 36.000 9.97 0.00 41.01 3.21
2356 5714 5.069119 AGACGCTACATTCTTCACCATATCA 59.931 40.000 0.00 0.00 0.00 2.15
2357 5715 5.858381 ACGCTACATTCTTCACCATATCAT 58.142 37.500 0.00 0.00 0.00 2.45
2494 11452 2.933906 ACAGTGGTTAGTTGACAACACG 59.066 45.455 20.08 8.14 0.00 4.49
2536 11494 2.910688 ATACGGGAGCTGTATTGGTG 57.089 50.000 0.00 0.00 32.66 4.17
2557 11515 5.163374 GGTGTTATAACATACTCCCTCCGTT 60.163 44.000 20.72 0.00 41.59 4.44
2558 11516 5.981915 GTGTTATAACATACTCCCTCCGTTC 59.018 44.000 20.72 0.03 41.59 3.95
2560 11518 2.249309 AACATACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2565 11523 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
2567 11525 6.557633 ACATACTCCCTCCGTTCCTAAATATT 59.442 38.462 0.00 0.00 0.00 1.28
2568 11526 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2570 11528 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2571 11529 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2572 11530 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2573 11531 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2575 11533 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2577 11535 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2578 11536 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2579 11537 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2594 11552 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2596 11554 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2598 11556 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2600 11558 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2604 11562 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2605 11563 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2606 11564 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2607 11565 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2609 11567 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2611 11569 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2613 11571 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2614 11572 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2616 11574 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2618 11576 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2619 11577 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2620 11578 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2621 11579 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2622 11580 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2623 11581 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2624 11582 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2625 11583 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2626 11584 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
2627 11585 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
2628 11586 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
2629 11587 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
2630 11588 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
2631 11589 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
2665 11623 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2666 11624 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2667 11625 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2668 11626 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2669 11627 5.364446 ACATCCGTATGTGGTAGTCCATTTA 59.636 40.000 0.00 0.00 44.79 1.40
2670 11628 5.936187 TCCGTATGTGGTAGTCCATTTAA 57.064 39.130 0.00 0.00 46.20 1.52
2671 11629 6.297080 TCCGTATGTGGTAGTCCATTTAAA 57.703 37.500 0.00 0.00 46.20 1.52
2672 11630 6.709281 TCCGTATGTGGTAGTCCATTTAAAA 58.291 36.000 0.00 0.00 46.20 1.52
2673 11631 7.340256 TCCGTATGTGGTAGTCCATTTAAAAT 58.660 34.615 0.00 0.00 46.20 1.82
2674 11632 7.496591 TCCGTATGTGGTAGTCCATTTAAAATC 59.503 37.037 0.00 0.00 46.20 2.17
2675 11633 7.497909 CCGTATGTGGTAGTCCATTTAAAATCT 59.502 37.037 0.00 0.00 46.20 2.40
2676 11634 8.548721 CGTATGTGGTAGTCCATTTAAAATCTC 58.451 37.037 0.00 0.00 46.20 2.75
2677 11635 9.614792 GTATGTGGTAGTCCATTTAAAATCTCT 57.385 33.333 0.00 0.00 46.20 3.10
2727 11685 4.035675 GGAGTATTTGCTAGAACCATGTGC 59.964 45.833 0.00 0.00 0.00 4.57
2731 11689 3.853831 TTGCTAGAACCATGTGCAATG 57.146 42.857 0.00 0.00 38.49 2.82
2761 11719 3.836562 ACCTAGGTTCGGTTAGTTCATGT 59.163 43.478 9.21 0.00 0.00 3.21
2833 11797 6.040842 ACCTAACATATGACATTGGCAATTCC 59.959 38.462 10.65 5.85 0.00 3.01
2962 11936 3.153919 TGTATTTGAAGCCACCCTTGTC 58.846 45.455 0.00 0.00 32.78 3.18
2998 11981 6.477053 TCTCTGATCTTATGCTGCTTAGTT 57.523 37.500 0.00 0.00 0.00 2.24
3060 12043 4.141892 TGACTAACGAACCAACTCTGGAAA 60.142 41.667 0.00 0.00 46.92 3.13
3087 12071 7.603180 TGTTCTGCCTATATATCAGTTGACT 57.397 36.000 10.26 0.00 0.00 3.41
3148 12132 2.128771 TGGGGCTACAATGCTTCTTC 57.871 50.000 0.00 0.00 0.00 2.87
3209 12212 7.147976 TCACATATCAGTGATGAACTTATCGG 58.852 38.462 16.15 0.00 43.18 4.18
3246 12249 6.503589 TTATTGATTGAAACTACCGGTTGG 57.496 37.500 15.04 9.28 38.29 3.77
3569 12583 9.686683 AATGAACAAAGGAAATATAGCAGTACT 57.313 29.630 0.00 0.00 0.00 2.73
3588 12602 7.201591 GCAGTACTACGAATAAGTGAGTAGTGA 60.202 40.741 15.83 0.59 46.19 3.41
3590 12604 8.881743 AGTACTACGAATAAGTGAGTAGTGAAG 58.118 37.037 14.93 0.00 46.19 3.02
3591 12605 7.918536 ACTACGAATAAGTGAGTAGTGAAGA 57.081 36.000 6.35 0.00 45.36 2.87
3592 12606 7.750769 ACTACGAATAAGTGAGTAGTGAAGAC 58.249 38.462 6.35 0.00 45.36 3.01
3593 12607 6.570672 ACGAATAAGTGAGTAGTGAAGACA 57.429 37.500 0.00 0.00 0.00 3.41
3595 12609 6.430308 ACGAATAAGTGAGTAGTGAAGACAGA 59.570 38.462 0.00 0.00 0.00 3.41
3596 12610 6.743627 CGAATAAGTGAGTAGTGAAGACAGAC 59.256 42.308 0.00 0.00 0.00 3.51
3608 12624 3.318275 TGAAGACAGACTTGTAGCGACTT 59.682 43.478 0.00 0.00 39.13 3.01
3609 12625 4.202121 TGAAGACAGACTTGTAGCGACTTT 60.202 41.667 0.00 0.00 39.13 2.66
3615 12632 6.470079 ACAGACTTGTAGCGACTTTTGTCAG 61.470 44.000 0.00 1.89 41.77 3.51
3659 12683 7.175990 ACCACACGAGTTTGTATAATTTCCAAT 59.824 33.333 0.00 0.00 0.00 3.16
3670 12694 6.821160 TGTATAATTTCCAATCGAGTTCAGCA 59.179 34.615 0.00 0.00 0.00 4.41
3678 12702 5.009510 TCCAATCGAGTTCAGCAATTTTCAA 59.990 36.000 0.00 0.00 0.00 2.69
3718 12743 6.414408 CAGTTTCTGCAATATTTCGACTCT 57.586 37.500 0.00 0.00 0.00 3.24
3719 12744 6.246449 CAGTTTCTGCAATATTTCGACTCTG 58.754 40.000 0.00 0.00 0.00 3.35
3720 12745 6.091305 CAGTTTCTGCAATATTTCGACTCTGA 59.909 38.462 0.00 0.00 0.00 3.27
3721 12746 6.091441 AGTTTCTGCAATATTTCGACTCTGAC 59.909 38.462 0.00 0.00 0.00 3.51
3722 12747 5.330455 TCTGCAATATTTCGACTCTGACT 57.670 39.130 0.00 0.00 0.00 3.41
3723 12748 5.344066 TCTGCAATATTTCGACTCTGACTC 58.656 41.667 0.00 0.00 0.00 3.36
3724 12749 5.072040 TGCAATATTTCGACTCTGACTCA 57.928 39.130 0.00 0.00 0.00 3.41
3725 12750 5.105063 TGCAATATTTCGACTCTGACTCAG 58.895 41.667 0.00 0.00 0.00 3.35
3726 12751 4.026145 GCAATATTTCGACTCTGACTCAGC 60.026 45.833 0.62 0.00 0.00 4.26
3727 12752 2.663826 ATTTCGACTCTGACTCAGCC 57.336 50.000 0.62 0.00 0.00 4.85
3728 12753 0.241213 TTTCGACTCTGACTCAGCCG 59.759 55.000 0.62 5.32 0.00 5.52
3729 12754 1.587043 TTCGACTCTGACTCAGCCGG 61.587 60.000 0.00 0.00 0.00 6.13
3958 12983 4.127907 GCTCTATGTTACCCAAGTAAGGC 58.872 47.826 0.00 0.00 39.13 4.35
4202 13637 2.496817 GGCTCCACTCTACTGCGG 59.503 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.040692 GTTGACGAAAAAGGTCGGGC 60.041 55.000 0.00 0.00 45.40 6.13
1 2 0.233848 CGTTGACGAAAAAGGTCGGG 59.766 55.000 0.00 0.00 45.40 5.14
2 3 0.932399 ACGTTGACGAAAAAGGTCGG 59.068 50.000 10.87 0.00 45.40 4.79
3 4 1.332552 CCACGTTGACGAAAAAGGTCG 60.333 52.381 10.87 0.00 46.54 4.79
4 5 1.935199 TCCACGTTGACGAAAAAGGTC 59.065 47.619 10.87 0.00 43.02 3.85
5 6 2.027003 TCCACGTTGACGAAAAAGGT 57.973 45.000 10.87 0.00 43.02 3.50
6 7 4.390603 TCATATCCACGTTGACGAAAAAGG 59.609 41.667 10.87 4.38 43.02 3.11
7 8 5.524511 TCATATCCACGTTGACGAAAAAG 57.475 39.130 10.87 0.00 43.02 2.27
82 83 3.064987 CTCCACCCGCTCCGTGTAG 62.065 68.421 0.00 0.00 0.00 2.74
100 103 2.439104 TTGGTTTTGCTGGGCCCAC 61.439 57.895 24.45 18.75 0.00 4.61
109 112 2.333581 CGTCGGGGTTGGTTTTGC 59.666 61.111 0.00 0.00 0.00 3.68
121 124 1.278172 CTGATATTCAGGCGCGTCGG 61.278 60.000 8.43 6.13 40.71 4.79
123 126 1.856012 GCTGATATTCAGGCGCGTC 59.144 57.895 0.21 0.21 44.43 5.19
162 168 1.812922 GTCTCCTCGTCGGACGCTA 60.813 63.158 24.76 8.65 42.21 4.26
224 230 3.055240 ACAAGAGAAAGAGCCAGATCCTG 60.055 47.826 0.00 0.00 0.00 3.86
225 231 3.180507 ACAAGAGAAAGAGCCAGATCCT 58.819 45.455 0.00 0.00 0.00 3.24
303 359 8.996024 ATTAAAATTGTCAAATTTACCCCGAG 57.004 30.769 5.49 0.00 43.63 4.63
304 360 8.808092 AGATTAAAATTGTCAAATTTACCCCGA 58.192 29.630 5.49 0.00 43.63 5.14
305 361 8.996024 AGATTAAAATTGTCAAATTTACCCCG 57.004 30.769 5.49 0.00 43.63 5.73
368 424 7.657336 TCAAAAAGATTAGCCGAGTGATTTTT 58.343 30.769 0.00 0.00 0.00 1.94
369 425 7.214467 TCAAAAAGATTAGCCGAGTGATTTT 57.786 32.000 0.00 0.00 0.00 1.82
370 426 6.817765 TCAAAAAGATTAGCCGAGTGATTT 57.182 33.333 0.00 0.00 0.00 2.17
371 427 6.817765 TTCAAAAAGATTAGCCGAGTGATT 57.182 33.333 0.00 0.00 0.00 2.57
372 428 6.183360 CCATTCAAAAAGATTAGCCGAGTGAT 60.183 38.462 0.00 0.00 0.00 3.06
373 429 5.123820 CCATTCAAAAAGATTAGCCGAGTGA 59.876 40.000 0.00 0.00 0.00 3.41
374 430 5.335127 CCATTCAAAAAGATTAGCCGAGTG 58.665 41.667 0.00 0.00 0.00 3.51
375 431 4.142381 GCCATTCAAAAAGATTAGCCGAGT 60.142 41.667 0.00 0.00 0.00 4.18
376 432 4.354587 GCCATTCAAAAAGATTAGCCGAG 58.645 43.478 0.00 0.00 0.00 4.63
377 433 3.181501 CGCCATTCAAAAAGATTAGCCGA 60.182 43.478 0.00 0.00 0.00 5.54
378 434 3.108144 CGCCATTCAAAAAGATTAGCCG 58.892 45.455 0.00 0.00 0.00 5.52
379 435 4.105486 GACGCCATTCAAAAAGATTAGCC 58.895 43.478 0.00 0.00 0.00 3.93
380 436 4.105486 GGACGCCATTCAAAAAGATTAGC 58.895 43.478 0.00 0.00 0.00 3.09
381 437 4.094294 TCGGACGCCATTCAAAAAGATTAG 59.906 41.667 0.00 0.00 0.00 1.73
382 438 4.004314 TCGGACGCCATTCAAAAAGATTA 58.996 39.130 0.00 0.00 0.00 1.75
383 439 2.817258 TCGGACGCCATTCAAAAAGATT 59.183 40.909 0.00 0.00 0.00 2.40
384 440 2.161609 GTCGGACGCCATTCAAAAAGAT 59.838 45.455 0.00 0.00 0.00 2.40
385 441 1.533731 GTCGGACGCCATTCAAAAAGA 59.466 47.619 0.00 0.00 0.00 2.52
386 442 1.265635 TGTCGGACGCCATTCAAAAAG 59.734 47.619 3.34 0.00 0.00 2.27
387 443 1.002251 GTGTCGGACGCCATTCAAAAA 60.002 47.619 10.54 0.00 0.00 1.94
388 444 0.589223 GTGTCGGACGCCATTCAAAA 59.411 50.000 10.54 0.00 0.00 2.44
389 445 1.561717 CGTGTCGGACGCCATTCAAA 61.562 55.000 15.48 0.00 42.21 2.69
390 446 2.024868 CGTGTCGGACGCCATTCAA 61.025 57.895 15.48 0.00 42.21 2.69
391 447 2.431771 CGTGTCGGACGCCATTCA 60.432 61.111 15.48 0.00 42.21 2.57
403 459 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
404 460 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
405 461 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
406 462 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
407 463 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
408 464 0.245539 TAGTGTAGTGTGGCGCCTTC 59.754 55.000 29.70 20.58 0.00 3.46
409 465 0.902531 ATAGTGTAGTGTGGCGCCTT 59.097 50.000 29.70 13.03 0.00 4.35
410 466 0.175760 CATAGTGTAGTGTGGCGCCT 59.824 55.000 29.70 9.99 0.00 5.52
411 467 0.108329 ACATAGTGTAGTGTGGCGCC 60.108 55.000 22.73 22.73 0.00 6.53
412 468 2.572191 TACATAGTGTAGTGTGGCGC 57.428 50.000 0.00 0.00 0.00 6.53
413 469 2.850060 CGTTACATAGTGTAGTGTGGCG 59.150 50.000 0.00 0.00 33.92 5.69
414 470 2.601763 GCGTTACATAGTGTAGTGTGGC 59.398 50.000 0.00 0.00 33.92 5.01
415 471 3.119245 AGGCGTTACATAGTGTAGTGTGG 60.119 47.826 0.00 0.00 33.92 4.17
416 472 3.857665 CAGGCGTTACATAGTGTAGTGTG 59.142 47.826 0.00 0.00 33.92 3.82
417 473 3.760151 TCAGGCGTTACATAGTGTAGTGT 59.240 43.478 0.00 0.00 33.92 3.55
418 474 4.103357 GTCAGGCGTTACATAGTGTAGTG 58.897 47.826 0.00 0.00 33.92 2.74
419 475 3.760151 TGTCAGGCGTTACATAGTGTAGT 59.240 43.478 0.00 0.00 33.92 2.73
420 476 4.095932 TCTGTCAGGCGTTACATAGTGTAG 59.904 45.833 0.00 0.00 33.92 2.74
421 477 4.011698 TCTGTCAGGCGTTACATAGTGTA 58.988 43.478 0.00 0.00 0.00 2.90
422 478 2.823747 TCTGTCAGGCGTTACATAGTGT 59.176 45.455 0.00 0.00 0.00 3.55
423 479 3.503827 TCTGTCAGGCGTTACATAGTG 57.496 47.619 0.00 0.00 0.00 2.74
424 480 4.278669 CCTATCTGTCAGGCGTTACATAGT 59.721 45.833 0.00 0.00 0.00 2.12
425 481 4.799678 CCTATCTGTCAGGCGTTACATAG 58.200 47.826 0.00 0.00 0.00 2.23
426 482 4.848562 CCTATCTGTCAGGCGTTACATA 57.151 45.455 0.00 0.00 0.00 2.29
427 483 3.735237 CCTATCTGTCAGGCGTTACAT 57.265 47.619 0.00 0.00 0.00 2.29
435 491 1.032794 TGTAGCGCCTATCTGTCAGG 58.967 55.000 2.29 0.00 36.16 3.86
436 492 1.598183 CGTGTAGCGCCTATCTGTCAG 60.598 57.143 2.29 0.00 0.00 3.51
437 493 0.380733 CGTGTAGCGCCTATCTGTCA 59.619 55.000 2.29 0.00 0.00 3.58
438 494 3.165559 CGTGTAGCGCCTATCTGTC 57.834 57.895 2.29 0.00 0.00 3.51
470 526 2.757980 TTTTAGGCGGTCCAGGGTGC 62.758 60.000 0.00 0.00 33.74 5.01
471 527 0.250989 TTTTTAGGCGGTCCAGGGTG 60.251 55.000 0.00 0.00 33.74 4.61
472 528 0.702316 ATTTTTAGGCGGTCCAGGGT 59.298 50.000 0.00 0.00 33.74 4.34
473 529 1.847328 AATTTTTAGGCGGTCCAGGG 58.153 50.000 0.00 0.00 33.74 4.45
474 530 3.617284 AGTAATTTTTAGGCGGTCCAGG 58.383 45.455 0.00 0.00 33.74 4.45
475 531 5.878669 ACTTAGTAATTTTTAGGCGGTCCAG 59.121 40.000 0.00 0.00 33.74 3.86
476 532 5.807909 ACTTAGTAATTTTTAGGCGGTCCA 58.192 37.500 0.00 0.00 33.74 4.02
477 533 5.876460 TGACTTAGTAATTTTTAGGCGGTCC 59.124 40.000 0.00 0.00 0.00 4.46
478 534 6.592994 ACTGACTTAGTAATTTTTAGGCGGTC 59.407 38.462 0.00 0.00 38.04 4.79
479 535 6.370718 CACTGACTTAGTAATTTTTAGGCGGT 59.629 38.462 0.00 0.00 37.60 5.68
480 536 6.370718 ACACTGACTTAGTAATTTTTAGGCGG 59.629 38.462 0.00 0.00 37.60 6.13
481 537 7.234384 CACACTGACTTAGTAATTTTTAGGCG 58.766 38.462 0.00 0.00 37.60 5.52
482 538 7.021790 GCACACTGACTTAGTAATTTTTAGGC 58.978 38.462 0.00 0.00 37.60 3.93
483 539 8.094798 TGCACACTGACTTAGTAATTTTTAGG 57.905 34.615 0.00 0.00 37.60 2.69
484 540 9.382244 GTTGCACACTGACTTAGTAATTTTTAG 57.618 33.333 0.00 0.00 37.60 1.85
485 541 8.065407 CGTTGCACACTGACTTAGTAATTTTTA 58.935 33.333 0.00 0.00 37.60 1.52
486 542 6.910433 CGTTGCACACTGACTTAGTAATTTTT 59.090 34.615 0.00 0.00 37.60 1.94
487 543 6.427150 CGTTGCACACTGACTTAGTAATTTT 58.573 36.000 0.00 0.00 37.60 1.82
488 544 5.560183 GCGTTGCACACTGACTTAGTAATTT 60.560 40.000 0.00 0.00 37.60 1.82
489 545 4.084013 GCGTTGCACACTGACTTAGTAATT 60.084 41.667 0.00 0.00 37.60 1.40
490 546 3.432252 GCGTTGCACACTGACTTAGTAAT 59.568 43.478 0.00 0.00 37.60 1.89
491 547 2.798283 GCGTTGCACACTGACTTAGTAA 59.202 45.455 0.00 0.00 37.60 2.24
492 548 2.400399 GCGTTGCACACTGACTTAGTA 58.600 47.619 0.00 0.00 37.60 1.82
493 549 1.217882 GCGTTGCACACTGACTTAGT 58.782 50.000 0.00 0.00 41.36 2.24
494 550 0.512952 GGCGTTGCACACTGACTTAG 59.487 55.000 0.00 0.00 0.00 2.18
495 551 0.105964 AGGCGTTGCACACTGACTTA 59.894 50.000 0.00 0.00 0.00 2.24
496 552 1.153168 AGGCGTTGCACACTGACTT 60.153 52.632 0.00 0.00 0.00 3.01
497 553 1.889105 CAGGCGTTGCACACTGACT 60.889 57.895 0.00 0.00 32.86 3.41
498 554 1.835483 CTCAGGCGTTGCACACTGAC 61.835 60.000 5.10 0.00 35.24 3.51
499 555 1.595109 CTCAGGCGTTGCACACTGA 60.595 57.895 8.11 8.11 37.61 3.41
500 556 1.563435 CTCTCAGGCGTTGCACACTG 61.563 60.000 0.00 0.00 0.00 3.66
501 557 1.301244 CTCTCAGGCGTTGCACACT 60.301 57.895 0.00 0.00 0.00 3.55
502 558 2.959357 GCTCTCAGGCGTTGCACAC 61.959 63.158 0.00 0.00 0.00 3.82
503 559 1.815817 TAGCTCTCAGGCGTTGCACA 61.816 55.000 0.00 0.00 37.29 4.57
504 560 1.079819 TAGCTCTCAGGCGTTGCAC 60.080 57.895 0.00 0.00 37.29 4.57
505 561 1.216444 CTAGCTCTCAGGCGTTGCA 59.784 57.895 0.00 0.00 37.29 4.08
506 562 1.520342 CCTAGCTCTCAGGCGTTGC 60.520 63.158 0.00 0.00 37.29 4.17
507 563 4.823276 CCTAGCTCTCAGGCGTTG 57.177 61.111 0.00 0.00 37.29 4.10
512 568 1.315981 TGTGACGCCTAGCTCTCAGG 61.316 60.000 0.00 0.00 36.16 3.86
513 569 0.179150 GTGTGACGCCTAGCTCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
514 570 0.609406 AGTGTGACGCCTAGCTCTCA 60.609 55.000 0.00 0.00 0.00 3.27
515 571 1.380524 TAGTGTGACGCCTAGCTCTC 58.619 55.000 0.00 0.00 0.00 3.20
516 572 2.060050 ATAGTGTGACGCCTAGCTCT 57.940 50.000 0.00 0.00 0.00 4.09
517 573 2.617308 TGTATAGTGTGACGCCTAGCTC 59.383 50.000 0.00 0.00 0.00 4.09
518 574 2.619177 CTGTATAGTGTGACGCCTAGCT 59.381 50.000 0.00 0.00 0.00 3.32
519 575 2.287668 CCTGTATAGTGTGACGCCTAGC 60.288 54.545 0.00 0.00 0.00 3.42
520 576 3.211865 TCCTGTATAGTGTGACGCCTAG 58.788 50.000 0.00 0.00 0.00 3.02
521 577 3.211865 CTCCTGTATAGTGTGACGCCTA 58.788 50.000 0.00 0.00 0.00 3.93
522 578 2.025155 CTCCTGTATAGTGTGACGCCT 58.975 52.381 0.00 0.00 0.00 5.52
523 579 1.749634 ACTCCTGTATAGTGTGACGCC 59.250 52.381 0.00 0.00 0.00 5.68
524 580 2.798680 CACTCCTGTATAGTGTGACGC 58.201 52.381 4.59 0.00 39.61 5.19
525 581 2.163613 TGCACTCCTGTATAGTGTGACG 59.836 50.000 11.93 0.00 45.01 4.35
526 582 3.868757 TGCACTCCTGTATAGTGTGAC 57.131 47.619 11.93 6.02 45.01 3.67
527 583 3.366985 CGTTGCACTCCTGTATAGTGTGA 60.367 47.826 11.93 0.00 45.01 3.58
528 584 2.923655 CGTTGCACTCCTGTATAGTGTG 59.076 50.000 5.25 5.80 45.01 3.82
529 585 2.674177 GCGTTGCACTCCTGTATAGTGT 60.674 50.000 5.25 0.00 45.01 3.55
530 586 1.927174 GCGTTGCACTCCTGTATAGTG 59.073 52.381 0.00 0.00 45.80 2.74
531 587 1.134788 GGCGTTGCACTCCTGTATAGT 60.135 52.381 0.00 0.00 0.00 2.12
532 588 1.137086 AGGCGTTGCACTCCTGTATAG 59.863 52.381 0.19 0.00 30.94 1.31
533 589 1.191535 AGGCGTTGCACTCCTGTATA 58.808 50.000 0.19 0.00 30.94 1.47
534 590 1.137086 CTAGGCGTTGCACTCCTGTAT 59.863 52.381 10.04 0.00 33.65 2.29
535 591 0.530744 CTAGGCGTTGCACTCCTGTA 59.469 55.000 10.04 0.00 33.65 2.74
536 592 1.185618 TCTAGGCGTTGCACTCCTGT 61.186 55.000 10.04 0.00 33.65 4.00
537 593 0.459237 CTCTAGGCGTTGCACTCCTG 60.459 60.000 10.04 2.50 33.65 3.86
538 594 1.608717 CCTCTAGGCGTTGCACTCCT 61.609 60.000 5.95 5.95 37.12 3.69
539 595 1.153549 CCTCTAGGCGTTGCACTCC 60.154 63.158 0.00 0.00 0.00 3.85
540 596 4.504132 CCTCTAGGCGTTGCACTC 57.496 61.111 0.00 0.00 0.00 3.51
557 613 4.165507 ACTATACAGTGTAGCGCCCAGC 62.166 54.545 2.29 0.00 38.99 4.85
558 614 1.681793 ACTATACAGTGTAGCGCCCAG 59.318 52.381 2.29 2.10 32.25 4.45
559 615 1.407618 CACTATACAGTGTAGCGCCCA 59.592 52.381 2.29 0.00 46.03 5.36
560 616 2.135664 CACTATACAGTGTAGCGCCC 57.864 55.000 2.29 0.00 46.03 6.13
569 625 4.219115 AGCTAGGCATCACACTATACAGT 58.781 43.478 0.00 0.00 34.42 3.55
570 626 4.522405 AGAGCTAGGCATCACACTATACAG 59.478 45.833 0.00 0.00 0.00 2.74
571 627 4.279420 CAGAGCTAGGCATCACACTATACA 59.721 45.833 0.00 0.00 0.00 2.29
572 628 4.520874 TCAGAGCTAGGCATCACACTATAC 59.479 45.833 0.00 0.00 0.00 1.47
573 629 4.729868 TCAGAGCTAGGCATCACACTATA 58.270 43.478 0.00 0.00 0.00 1.31
574 630 3.570540 TCAGAGCTAGGCATCACACTAT 58.429 45.455 0.00 0.00 0.00 2.12
575 631 2.954989 CTCAGAGCTAGGCATCACACTA 59.045 50.000 0.00 0.00 0.00 2.74
576 632 1.755959 CTCAGAGCTAGGCATCACACT 59.244 52.381 0.00 0.00 0.00 3.55
577 633 1.202510 CCTCAGAGCTAGGCATCACAC 60.203 57.143 0.00 0.00 0.00 3.82
578 634 1.117994 CCTCAGAGCTAGGCATCACA 58.882 55.000 0.00 0.00 0.00 3.58
579 635 3.984838 CCTCAGAGCTAGGCATCAC 57.015 57.895 0.00 0.00 0.00 3.06
590 646 3.117171 GTGTGCAGCGCCTCAGAG 61.117 66.667 2.29 0.00 0.00 3.35
591 647 3.619767 AGTGTGCAGCGCCTCAGA 61.620 61.111 2.29 0.00 0.00 3.27
592 648 3.420606 CAGTGTGCAGCGCCTCAG 61.421 66.667 2.29 0.00 0.00 3.35
593 649 4.994471 CCAGTGTGCAGCGCCTCA 62.994 66.667 2.29 0.00 0.00 3.86
597 653 3.969802 AAAGCCAGTGTGCAGCGC 61.970 61.111 0.00 0.00 0.00 5.92
598 654 1.506309 TACAAAGCCAGTGTGCAGCG 61.506 55.000 6.40 0.00 0.00 5.18
599 655 0.667993 TTACAAAGCCAGTGTGCAGC 59.332 50.000 6.40 0.00 0.00 5.25
600 656 3.648339 ATTTACAAAGCCAGTGTGCAG 57.352 42.857 6.40 0.00 0.00 4.41
601 657 4.367450 GAAATTTACAAAGCCAGTGTGCA 58.633 39.130 6.40 0.00 0.00 4.57
602 658 3.425193 CGAAATTTACAAAGCCAGTGTGC 59.575 43.478 0.00 0.00 0.00 4.57
603 659 3.980775 CCGAAATTTACAAAGCCAGTGTG 59.019 43.478 0.00 0.00 0.00 3.82
604 660 3.886505 TCCGAAATTTACAAAGCCAGTGT 59.113 39.130 0.00 0.00 0.00 3.55
605 661 4.497473 TCCGAAATTTACAAAGCCAGTG 57.503 40.909 0.00 0.00 0.00 3.66
606 662 4.764823 TGATCCGAAATTTACAAAGCCAGT 59.235 37.500 0.00 0.00 0.00 4.00
607 663 5.095490 GTGATCCGAAATTTACAAAGCCAG 58.905 41.667 0.00 0.00 0.00 4.85
608 664 4.520874 TGTGATCCGAAATTTACAAAGCCA 59.479 37.500 0.00 0.00 0.00 4.75
609 665 4.857037 GTGTGATCCGAAATTTACAAAGCC 59.143 41.667 0.00 0.00 0.00 4.35
610 666 4.553429 CGTGTGATCCGAAATTTACAAAGC 59.447 41.667 0.00 0.00 0.00 3.51
611 667 5.086058 CCGTGTGATCCGAAATTTACAAAG 58.914 41.667 0.00 0.00 0.00 2.77
612 668 4.083217 CCCGTGTGATCCGAAATTTACAAA 60.083 41.667 0.00 0.00 0.00 2.83
613 669 3.437395 CCCGTGTGATCCGAAATTTACAA 59.563 43.478 0.00 0.00 0.00 2.41
614 670 3.004171 CCCGTGTGATCCGAAATTTACA 58.996 45.455 0.00 0.00 0.00 2.41
615 671 3.004862 ACCCGTGTGATCCGAAATTTAC 58.995 45.455 0.00 0.00 0.00 2.01
616 672 3.004171 CACCCGTGTGATCCGAAATTTA 58.996 45.455 0.00 0.00 45.76 1.40
617 673 1.810151 CACCCGTGTGATCCGAAATTT 59.190 47.619 0.00 0.00 45.76 1.82
618 674 1.448985 CACCCGTGTGATCCGAAATT 58.551 50.000 0.00 0.00 45.76 1.82
619 675 1.024579 GCACCCGTGTGATCCGAAAT 61.025 55.000 0.90 0.00 45.76 2.17
620 676 1.669760 GCACCCGTGTGATCCGAAA 60.670 57.895 0.90 0.00 45.76 3.46
621 677 2.047655 GCACCCGTGTGATCCGAA 60.048 61.111 0.90 0.00 45.76 4.30
622 678 4.429212 CGCACCCGTGTGATCCGA 62.429 66.667 0.90 0.00 45.76 4.55
623 679 4.429212 TCGCACCCGTGTGATCCG 62.429 66.667 0.90 0.00 45.76 4.18
652 708 0.998669 TGACAGATATGCGTTGCACG 59.001 50.000 0.00 4.61 43.04 5.34
653 709 1.328680 CCTGACAGATATGCGTTGCAC 59.671 52.381 3.32 0.00 43.04 4.57
654 710 1.655484 CCTGACAGATATGCGTTGCA 58.345 50.000 3.32 0.00 44.86 4.08
655 711 0.305922 GCCTGACAGATATGCGTTGC 59.694 55.000 3.32 0.00 0.00 4.17
656 712 1.655484 TGCCTGACAGATATGCGTTG 58.345 50.000 3.32 0.00 0.00 4.10
657 713 2.615447 CAATGCCTGACAGATATGCGTT 59.385 45.455 3.32 3.61 0.00 4.84
658 714 2.216046 CAATGCCTGACAGATATGCGT 58.784 47.619 3.32 0.00 0.00 5.24
659 715 1.069432 GCAATGCCTGACAGATATGCG 60.069 52.381 3.32 0.00 0.00 4.73
660 716 1.951602 TGCAATGCCTGACAGATATGC 59.048 47.619 3.32 9.39 0.00 3.14
661 717 5.952526 TTATGCAATGCCTGACAGATATG 57.047 39.130 3.32 0.00 0.00 1.78
703 759 4.200874 AGCTAAGCGTCACACTATAGAGT 58.799 43.478 6.78 1.08 35.80 3.24
704 760 4.513692 AGAGCTAAGCGTCACACTATAGAG 59.486 45.833 6.78 0.31 0.00 2.43
705 761 4.273724 CAGAGCTAAGCGTCACACTATAGA 59.726 45.833 6.78 0.00 0.00 1.98
706 762 4.273724 TCAGAGCTAAGCGTCACACTATAG 59.726 45.833 0.00 0.00 0.00 1.31
707 763 4.196971 TCAGAGCTAAGCGTCACACTATA 58.803 43.478 0.00 0.00 0.00 1.31
708 764 3.017442 TCAGAGCTAAGCGTCACACTAT 58.983 45.455 0.00 0.00 0.00 2.12
709 765 2.420372 CTCAGAGCTAAGCGTCACACTA 59.580 50.000 0.00 0.00 0.00 2.74
710 766 1.201181 CTCAGAGCTAAGCGTCACACT 59.799 52.381 0.00 0.00 0.00 3.55
711 767 1.623359 CTCAGAGCTAAGCGTCACAC 58.377 55.000 0.00 0.00 0.00 3.82
712 768 0.528017 CCTCAGAGCTAAGCGTCACA 59.472 55.000 0.00 0.00 0.00 3.58
713 769 0.804156 GCCTCAGAGCTAAGCGTCAC 60.804 60.000 0.00 0.00 0.00 3.67
714 770 1.513158 GCCTCAGAGCTAAGCGTCA 59.487 57.895 0.00 0.00 0.00 4.35
715 771 1.587613 CGCCTCAGAGCTAAGCGTC 60.588 63.158 9.84 0.00 41.78 5.19
716 772 2.492090 CGCCTCAGAGCTAAGCGT 59.508 61.111 9.84 0.00 41.78 5.07
724 780 3.117171 GTGTGCAGCGCCTCAGAG 61.117 66.667 2.29 0.00 0.00 3.35
725 781 3.619767 AGTGTGCAGCGCCTCAGA 61.620 61.111 2.29 0.00 0.00 3.27
726 782 3.420606 CAGTGTGCAGCGCCTCAG 61.421 66.667 2.29 0.00 0.00 3.35
727 783 3.927548 TCAGTGTGCAGCGCCTCA 61.928 61.111 2.29 0.00 0.00 3.86
728 784 3.418068 GTCAGTGTGCAGCGCCTC 61.418 66.667 2.29 0.00 0.00 4.70
729 785 2.947938 AAAGTCAGTGTGCAGCGCCT 62.948 55.000 2.29 0.00 0.00 5.52
730 786 2.546494 AAAGTCAGTGTGCAGCGCC 61.546 57.895 2.29 0.00 0.00 6.53
731 787 1.369689 CAAAGTCAGTGTGCAGCGC 60.370 57.895 0.00 0.00 0.00 5.92
732 788 0.316442 CACAAAGTCAGTGTGCAGCG 60.316 55.000 0.00 0.00 39.93 5.18
733 789 3.539253 CACAAAGTCAGTGTGCAGC 57.461 52.632 0.00 0.00 39.93 5.25
739 795 1.032014 CCCCCAACACAAAGTCAGTG 58.968 55.000 0.00 0.00 42.56 3.66
740 796 0.755327 GCCCCCAACACAAAGTCAGT 60.755 55.000 0.00 0.00 0.00 3.41
741 797 1.463553 GGCCCCCAACACAAAGTCAG 61.464 60.000 0.00 0.00 0.00 3.51
742 798 1.456705 GGCCCCCAACACAAAGTCA 60.457 57.895 0.00 0.00 0.00 3.41
743 799 1.456705 TGGCCCCCAACACAAAGTC 60.457 57.895 0.00 0.00 0.00 3.01
744 800 1.760480 GTGGCCCCCAACACAAAGT 60.760 57.895 0.00 0.00 37.54 2.66
745 801 0.178975 TAGTGGCCCCCAACACAAAG 60.179 55.000 0.00 0.00 39.99 2.77
746 802 0.261991 TTAGTGGCCCCCAACACAAA 59.738 50.000 0.00 0.00 39.99 2.83
747 803 0.261991 TTTAGTGGCCCCCAACACAA 59.738 50.000 0.00 0.00 39.99 3.33
748 804 0.261991 TTTTAGTGGCCCCCAACACA 59.738 50.000 0.00 0.00 39.99 3.72
749 805 1.415200 TTTTTAGTGGCCCCCAACAC 58.585 50.000 0.00 0.00 34.18 3.32
750 806 3.948425 TTTTTAGTGGCCCCCAACA 57.052 47.368 0.00 0.00 34.18 3.33
812 868 7.593273 TGACAATTTTAACGTGTGGATGAAATC 59.407 33.333 0.00 0.00 44.55 2.17
813 869 7.429633 TGACAATTTTAACGTGTGGATGAAAT 58.570 30.769 0.00 0.00 0.00 2.17
814 870 6.796426 TGACAATTTTAACGTGTGGATGAAA 58.204 32.000 0.00 0.00 0.00 2.69
815 871 6.378710 TGACAATTTTAACGTGTGGATGAA 57.621 33.333 0.00 0.00 0.00 2.57
816 872 6.378710 TTGACAATTTTAACGTGTGGATGA 57.621 33.333 0.00 0.00 0.00 2.92
817 873 7.636259 ATTTGACAATTTTAACGTGTGGATG 57.364 32.000 0.00 0.00 0.00 3.51
818 874 8.547069 CAAATTTGACAATTTTAACGTGTGGAT 58.453 29.630 13.08 0.00 40.09 3.41
819 875 7.464710 GCAAATTTGACAATTTTAACGTGTGGA 60.465 33.333 22.31 0.00 40.09 4.02
820 876 6.626882 GCAAATTTGACAATTTTAACGTGTGG 59.373 34.615 22.31 0.00 40.09 4.17
821 877 6.626882 GGCAAATTTGACAATTTTAACGTGTG 59.373 34.615 22.31 0.00 40.09 3.82
822 878 6.238239 GGGCAAATTTGACAATTTTAACGTGT 60.238 34.615 25.05 0.00 40.09 4.49
823 879 6.132724 GGGCAAATTTGACAATTTTAACGTG 58.867 36.000 25.05 0.00 40.09 4.49
824 880 5.237561 GGGGCAAATTTGACAATTTTAACGT 59.762 36.000 25.05 0.00 40.09 3.99
825 881 5.237344 TGGGGCAAATTTGACAATTTTAACG 59.763 36.000 25.05 0.00 40.09 3.18
826 882 6.625873 TGGGGCAAATTTGACAATTTTAAC 57.374 33.333 25.05 5.31 40.09 2.01
827 883 6.830838 AGTTGGGGCAAATTTGACAATTTTAA 59.169 30.769 25.05 7.82 40.09 1.52
828 884 6.360618 AGTTGGGGCAAATTTGACAATTTTA 58.639 32.000 25.05 2.12 40.09 1.52
829 885 5.199723 AGTTGGGGCAAATTTGACAATTTT 58.800 33.333 25.05 5.17 40.09 1.82
830 886 4.790937 AGTTGGGGCAAATTTGACAATTT 58.209 34.783 25.05 12.98 42.37 1.82
831 887 4.388485 GAGTTGGGGCAAATTTGACAATT 58.612 39.130 25.05 18.52 38.18 2.32
832 888 3.554752 CGAGTTGGGGCAAATTTGACAAT 60.555 43.478 25.05 4.37 38.18 2.71
833 889 2.223923 CGAGTTGGGGCAAATTTGACAA 60.224 45.455 25.05 19.24 38.18 3.18
834 890 1.339610 CGAGTTGGGGCAAATTTGACA 59.660 47.619 25.05 14.91 38.18 3.58
835 891 1.336795 CCGAGTTGGGGCAAATTTGAC 60.337 52.381 22.31 19.34 34.70 3.18
836 892 0.965439 CCGAGTTGGGGCAAATTTGA 59.035 50.000 22.31 0.00 0.00 2.69
837 893 0.678950 ACCGAGTTGGGGCAAATTTG 59.321 50.000 14.03 14.03 44.64 2.32
838 894 0.966179 GACCGAGTTGGGGCAAATTT 59.034 50.000 0.24 0.00 44.64 1.82
839 895 0.898326 GGACCGAGTTGGGGCAAATT 60.898 55.000 0.24 0.00 44.64 1.82
840 896 1.304134 GGACCGAGTTGGGGCAAAT 60.304 57.895 0.24 0.00 44.64 2.32
841 897 2.114411 GGACCGAGTTGGGGCAAA 59.886 61.111 0.24 0.00 44.64 3.68
842 898 4.323477 CGGACCGAGTTGGGGCAA 62.323 66.667 8.64 0.00 44.64 4.52
844 900 3.384532 TACGGACCGAGTTGGGGC 61.385 66.667 23.38 0.00 44.64 5.80
845 901 1.538687 AAGTACGGACCGAGTTGGGG 61.539 60.000 23.38 0.00 44.64 4.96
846 902 1.176527 TAAGTACGGACCGAGTTGGG 58.823 55.000 23.38 0.00 44.64 4.12
847 903 2.424601 TGATAAGTACGGACCGAGTTGG 59.575 50.000 23.38 0.00 46.41 3.77
848 904 3.692576 CTGATAAGTACGGACCGAGTTG 58.307 50.000 23.38 0.00 0.00 3.16
849 905 2.098770 GCTGATAAGTACGGACCGAGTT 59.901 50.000 23.38 15.01 0.00 3.01
850 906 1.674962 GCTGATAAGTACGGACCGAGT 59.325 52.381 23.38 0.54 0.00 4.18
894 950 2.230508 CTGGTTTCTGGCGTCAGTAGTA 59.769 50.000 18.04 0.00 41.59 1.82
1428 1519 3.442996 CTCACCGTTGAGGACATCC 57.557 57.895 1.31 0.00 45.06 3.51
1443 1534 1.203441 AACCAGGGATGCTCAGCTCA 61.203 55.000 0.00 0.00 0.00 4.26
1444 1535 0.034670 AAACCAGGGATGCTCAGCTC 60.035 55.000 0.00 0.00 0.00 4.09
1445 1536 0.407139 AAAACCAGGGATGCTCAGCT 59.593 50.000 0.00 0.00 0.00 4.24
1446 1537 0.813821 GAAAACCAGGGATGCTCAGC 59.186 55.000 0.00 0.00 0.00 4.26
1447 1538 2.363683 GAGAAAACCAGGGATGCTCAG 58.636 52.381 0.00 0.00 0.00 3.35
1528 1624 8.278639 ACCATTTAACCAAGGTGATCATATGTA 58.721 33.333 0.00 0.00 32.04 2.29
1630 1732 5.817988 CATCAGCTACAGGAAAATGATGTG 58.182 41.667 5.11 0.00 39.29 3.21
1642 1744 4.341806 AGATTCAGAGGACATCAGCTACAG 59.658 45.833 0.00 0.00 0.00 2.74
1760 1862 2.760650 GCAGGGAAATCTTTCGGGAAAT 59.239 45.455 0.00 0.00 38.06 2.17
1764 1866 2.710096 TAGCAGGGAAATCTTTCGGG 57.290 50.000 0.00 0.00 38.06 5.14
1890 1992 5.479306 TGTAAAAAGAGAGAAGACATCCCG 58.521 41.667 0.00 0.00 0.00 5.14
1955 2059 8.481314 TGATATGAGAAGAAGTTCATTAGCTGT 58.519 33.333 5.50 0.00 35.72 4.40
1993 2099 9.850628 ATGTTTCTCTCATGTCATGTTAAATTG 57.149 29.630 12.54 0.00 0.00 2.32
2271 5628 4.058124 TGTTCAATGTCCTGAAGAGAACG 58.942 43.478 0.00 0.00 36.01 3.95
2356 5714 5.772672 ACAGCCTATAGAAAGATCGACTGAT 59.227 40.000 0.00 0.00 37.60 2.90
2357 5715 5.133941 ACAGCCTATAGAAAGATCGACTGA 58.866 41.667 0.00 0.00 0.00 3.41
2494 11452 4.833390 ACTTACCAACTAGCTTGATGTCC 58.167 43.478 1.04 0.00 30.42 4.02
2536 11494 5.303845 AGGAACGGAGGGAGTATGTTATAAC 59.696 44.000 8.75 8.75 0.00 1.89
2567 11525 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2568 11526 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2570 11528 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2571 11529 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2572 11530 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2573 11531 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2575 11533 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2577 11535 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2578 11536 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2579 11537 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2581 11539 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2582 11540 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2583 11541 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2585 11543 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2586 11544 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2587 11545 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2588 11546 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2589 11547 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2594 11552 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2596 11554 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2598 11556 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2600 11558 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2604 11562 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
2605 11563 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
2678 11636 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2679 11637 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2680 11638 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2681 11639 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2682 11640 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2683 11641 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2684 11642 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2685 11643 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2686 11644 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2687 11645 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2688 11646 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
2689 11647 6.687139 GCAAATACTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
2690 11648 5.681639 CAAATACTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
2691 11649 4.624604 GCAAATACTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
2692 11650 3.118519 GCAAATACTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
2693 11651 2.433239 GCAAATACTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
2694 11652 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2695 11653 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
2696 11654 2.693267 AGCAAATACTCCCTCCGTTC 57.307 50.000 0.00 0.00 0.00 3.95
2697 11655 3.371965 TCTAGCAAATACTCCCTCCGTT 58.628 45.455 0.00 0.00 0.00 4.44
2749 11707 3.506067 CCACCAAAGGACATGAACTAACC 59.494 47.826 0.00 0.00 0.00 2.85
2761 11719 4.144297 GCATATATTGAGCCACCAAAGGA 58.856 43.478 0.00 0.00 0.00 3.36
2833 11797 6.214191 ACTGATATATAGTCAATCCCTGCG 57.786 41.667 0.00 0.00 0.00 5.18
2962 11936 4.930963 AGATCAGAGATTAGCACAGAACG 58.069 43.478 0.00 0.00 0.00 3.95
2998 11981 2.334977 TGTTCTGAAGTAGGCTTGGGA 58.665 47.619 0.00 0.00 34.61 4.37
3057 12040 8.839310 ACTGATATATAGGCAGAACATGTTTC 57.161 34.615 13.36 6.25 33.94 2.78
3060 12043 7.875041 GTCAACTGATATATAGGCAGAACATGT 59.125 37.037 17.58 0.00 33.94 3.21
3087 12071 3.593442 ATTTGTGGAACCAAGACTCCA 57.407 42.857 0.00 0.00 39.47 3.86
3148 12132 7.978414 TCTCTAGAGAAGCATCAAAATAGTGTG 59.022 37.037 20.31 0.00 33.91 3.82
3206 12209 2.232756 TAATGCAATCGCTAAGCCGA 57.767 45.000 0.00 0.00 41.98 5.54
3209 12212 6.144854 TCAATCAATAATGCAATCGCTAAGC 58.855 36.000 0.00 0.00 39.64 3.09
3246 12249 6.746120 TCCTGACAGAACAGAGTAAGTAAAC 58.254 40.000 3.32 0.00 39.94 2.01
3436 12441 2.387445 GCACGATACGTTGCAGCCA 61.387 57.895 5.10 0.00 38.32 4.75
3546 12560 8.753175 CGTAGTACTGCTATATTTCCTTTGTTC 58.247 37.037 5.39 0.00 31.50 3.18
3565 12579 8.877779 TCTTCACTACTCACTTATTCGTAGTAC 58.122 37.037 0.00 0.00 40.21 2.73
3569 12583 7.605309 TCTGTCTTCACTACTCACTTATTCGTA 59.395 37.037 0.00 0.00 0.00 3.43
3579 12593 5.048643 GCTACAAGTCTGTCTTCACTACTCA 60.049 44.000 0.00 0.00 36.96 3.41
3580 12594 5.395642 GCTACAAGTCTGTCTTCACTACTC 58.604 45.833 0.00 0.00 36.96 2.59
3588 12602 4.323553 AAAGTCGCTACAAGTCTGTCTT 57.676 40.909 0.00 0.00 36.96 3.01
3590 12604 3.802685 ACAAAAGTCGCTACAAGTCTGTC 59.197 43.478 0.00 0.00 36.96 3.51
3591 12605 3.793559 ACAAAAGTCGCTACAAGTCTGT 58.206 40.909 0.00 0.00 39.75 3.41
3592 12606 3.802139 TGACAAAAGTCGCTACAAGTCTG 59.198 43.478 0.00 0.00 0.00 3.51
3593 12607 4.051922 CTGACAAAAGTCGCTACAAGTCT 58.948 43.478 0.00 0.00 0.00 3.24
3595 12609 3.793559 ACTGACAAAAGTCGCTACAAGT 58.206 40.909 0.00 0.00 0.00 3.16
3596 12610 4.376450 GACTGACAAAAGTCGCTACAAG 57.624 45.455 0.00 0.00 37.44 3.16
3626 12643 2.612212 ACAAACTCGTGTGGTTCATCAC 59.388 45.455 0.00 0.00 38.09 3.06
3659 12683 4.847633 CACTTGAAAATTGCTGAACTCGA 58.152 39.130 0.00 0.00 0.00 4.04
3670 12694 5.047519 CCTGAGGAAGATGCACTTGAAAATT 60.048 40.000 0.00 0.00 39.13 1.82
3678 12702 0.252479 CTGCCTGAGGAAGATGCACT 59.748 55.000 0.00 0.00 0.00 4.40
3715 12740 2.575993 CCACCGGCTGAGTCAGAG 59.424 66.667 24.55 15.55 32.44 3.35
3958 12983 1.000385 TGCTTGAATTTGGACCTTGCG 60.000 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.