Multiple sequence alignment - TraesCS6D01G163400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G163400 | chr6D | 100.000 | 5061 | 0 | 0 | 1 | 5061 | 142842196 | 142847256 | 0.000000e+00 | 9347 |
1 | TraesCS6D01G163400 | chr6D | 82.958 | 311 | 37 | 13 | 4753 | 5059 | 142866349 | 142866647 | 3.000000e-67 | 267 |
2 | TraesCS6D01G163400 | chr6D | 86.957 | 161 | 20 | 1 | 4753 | 4913 | 142922270 | 142922429 | 4.030000e-41 | 180 |
3 | TraesCS6D01G163400 | chr6D | 96.629 | 89 | 3 | 0 | 4114 | 4202 | 93317725 | 93317813 | 1.140000e-31 | 148 |
4 | TraesCS6D01G163400 | chr6B | 92.119 | 2246 | 122 | 28 | 188 | 2419 | 248368229 | 248370433 | 0.000000e+00 | 3116 |
5 | TraesCS6D01G163400 | chr6B | 95.763 | 1723 | 38 | 13 | 2414 | 4119 | 248370494 | 248372198 | 0.000000e+00 | 2745 |
6 | TraesCS6D01G163400 | chr6B | 97.685 | 864 | 18 | 1 | 4200 | 5061 | 248372196 | 248373059 | 0.000000e+00 | 1483 |
7 | TraesCS6D01G163400 | chr6B | 82.258 | 310 | 41 | 11 | 4753 | 5059 | 248388027 | 248388325 | 6.500000e-64 | 255 |
8 | TraesCS6D01G163400 | chr6B | 89.189 | 148 | 6 | 2 | 10 | 155 | 248362976 | 248363115 | 5.210000e-40 | 176 |
9 | TraesCS6D01G163400 | chr6B | 85.535 | 159 | 22 | 1 | 4753 | 4911 | 248505139 | 248505296 | 1.130000e-36 | 165 |
10 | TraesCS6D01G163400 | chr6A | 94.767 | 1720 | 54 | 14 | 2414 | 4112 | 187902269 | 187903973 | 0.000000e+00 | 2645 |
11 | TraesCS6D01G163400 | chr6A | 93.956 | 1638 | 58 | 23 | 806 | 2419 | 187900589 | 187902209 | 0.000000e+00 | 2438 |
12 | TraesCS6D01G163400 | chr6A | 91.753 | 873 | 44 | 8 | 4205 | 5061 | 187903967 | 187904827 | 0.000000e+00 | 1188 |
13 | TraesCS6D01G163400 | chr6A | 82.315 | 311 | 39 | 13 | 4753 | 5059 | 187910221 | 187910519 | 6.500000e-64 | 255 |
14 | TraesCS6D01G163400 | chr6A | 89.796 | 196 | 17 | 3 | 624 | 817 | 187900377 | 187900571 | 1.090000e-61 | 248 |
15 | TraesCS6D01G163400 | chr4D | 100.000 | 85 | 0 | 0 | 4118 | 4202 | 492602152 | 492602236 | 1.890000e-34 | 158 |
16 | TraesCS6D01G163400 | chr4D | 94.792 | 96 | 5 | 0 | 4115 | 4210 | 34978338 | 34978433 | 3.160000e-32 | 150 |
17 | TraesCS6D01G163400 | chr4D | 96.629 | 89 | 3 | 0 | 4114 | 4202 | 50531357 | 50531445 | 1.140000e-31 | 148 |
18 | TraesCS6D01G163400 | chr4D | 96.629 | 89 | 3 | 0 | 4114 | 4202 | 53611786 | 53611874 | 1.140000e-31 | 148 |
19 | TraesCS6D01G163400 | chr1D | 96.629 | 89 | 3 | 0 | 4114 | 4202 | 267157690 | 267157778 | 1.140000e-31 | 148 |
20 | TraesCS6D01G163400 | chr2B | 95.652 | 92 | 3 | 1 | 4118 | 4209 | 383072067 | 383072157 | 4.080000e-31 | 147 |
21 | TraesCS6D01G163400 | chr4A | 91.429 | 105 | 6 | 3 | 4107 | 4209 | 176881304 | 176881407 | 1.900000e-29 | 141 |
22 | TraesCS6D01G163400 | chr2A | 90.654 | 107 | 6 | 4 | 4111 | 4214 | 86062504 | 86062399 | 6.830000e-29 | 139 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6D01G163400 | chr6D | 142842196 | 142847256 | 5060 | False | 9347.00 | 9347 | 100.000 | 1 | 5061 | 1 | chr6D.!!$F2 | 5060 |
1 | TraesCS6D01G163400 | chr6B | 248368229 | 248373059 | 4830 | False | 2448.00 | 3116 | 95.189 | 188 | 5061 | 3 | chr6B.!!$F4 | 4873 |
2 | TraesCS6D01G163400 | chr6A | 187900377 | 187904827 | 4450 | False | 1629.75 | 2645 | 92.568 | 624 | 5061 | 4 | chr6A.!!$F2 | 4437 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
29 | 30 | 0.028374 | GCGTACACGTGCTTTGGTTT | 59.972 | 50.000 | 17.22 | 0.00 | 42.22 | 3.27 | F |
141 | 142 | 0.183492 | TTTTGAGCACCAGCCTGACT | 59.817 | 50.000 | 0.00 | 0.00 | 43.56 | 3.41 | F |
1571 | 1618 | 0.174389 | CTGTGTGTCTGGCGAGCTAT | 59.826 | 55.000 | 0.00 | 0.00 | 0.00 | 2.97 | F |
1715 | 1763 | 1.133598 | TGGCTGTATTAGTCCGACGTG | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 | F |
2583 | 2774 | 2.111669 | CTGGTCACCACTGCAGCA | 59.888 | 61.111 | 15.27 | 0.16 | 0.00 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1559 | 1606 | 0.178767 | AATGTGCATAGCTCGCCAGA | 59.821 | 50.000 | 5.65 | 0.0 | 0.0 | 3.86 | R |
1709 | 1757 | 1.011333 | AAGTTGAAACACCCACGTCG | 58.989 | 50.000 | 0.00 | 0.0 | 0.0 | 5.12 | R |
2633 | 2824 | 3.731652 | TTGTCCTGTTTTCCATTGCAG | 57.268 | 42.857 | 0.00 | 0.0 | 0.0 | 4.41 | R |
3350 | 3562 | 5.147330 | ACACATTAGAATCTCGACCAACA | 57.853 | 39.130 | 0.00 | 0.0 | 0.0 | 3.33 | R |
4185 | 4397 | 0.561184 | TCATACTCCCTCCGTCCCAT | 59.439 | 55.000 | 0.00 | 0.0 | 0.0 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 0.930310 | ATGATGATGCGTACACGTGC | 59.070 | 50.000 | 17.22 | 1.22 | 42.22 | 5.34 |
22 | 23 | 0.108851 | TGATGATGCGTACACGTGCT | 60.109 | 50.000 | 17.22 | 5.64 | 42.22 | 4.40 |
23 | 24 | 0.999406 | GATGATGCGTACACGTGCTT | 59.001 | 50.000 | 17.22 | 0.00 | 42.22 | 3.91 |
24 | 25 | 1.393539 | GATGATGCGTACACGTGCTTT | 59.606 | 47.619 | 17.22 | 0.00 | 42.22 | 3.51 |
25 | 26 | 0.510790 | TGATGCGTACACGTGCTTTG | 59.489 | 50.000 | 17.22 | 4.29 | 42.22 | 2.77 |
26 | 27 | 0.179225 | GATGCGTACACGTGCTTTGG | 60.179 | 55.000 | 17.22 | 1.73 | 42.22 | 3.28 |
27 | 28 | 0.882927 | ATGCGTACACGTGCTTTGGT | 60.883 | 50.000 | 17.22 | 0.00 | 42.22 | 3.67 |
28 | 29 | 1.090625 | TGCGTACACGTGCTTTGGTT | 61.091 | 50.000 | 17.22 | 0.00 | 42.22 | 3.67 |
29 | 30 | 0.028374 | GCGTACACGTGCTTTGGTTT | 59.972 | 50.000 | 17.22 | 0.00 | 42.22 | 3.27 |
30 | 31 | 1.737249 | CGTACACGTGCTTTGGTTTG | 58.263 | 50.000 | 17.22 | 0.00 | 34.11 | 2.93 |
31 | 32 | 1.328069 | CGTACACGTGCTTTGGTTTGA | 59.672 | 47.619 | 17.22 | 0.00 | 34.11 | 2.69 |
32 | 33 | 2.711885 | GTACACGTGCTTTGGTTTGAC | 58.288 | 47.619 | 17.22 | 0.00 | 0.00 | 3.18 |
33 | 34 | 1.169577 | ACACGTGCTTTGGTTTGACA | 58.830 | 45.000 | 17.22 | 0.00 | 0.00 | 3.58 |
34 | 35 | 1.542030 | ACACGTGCTTTGGTTTGACAA | 59.458 | 42.857 | 17.22 | 0.00 | 0.00 | 3.18 |
35 | 36 | 1.917303 | CACGTGCTTTGGTTTGACAAC | 59.083 | 47.619 | 0.82 | 0.00 | 0.00 | 3.32 |
36 | 37 | 1.542030 | ACGTGCTTTGGTTTGACAACA | 59.458 | 42.857 | 0.00 | 0.00 | 34.15 | 3.33 |
37 | 38 | 1.917303 | CGTGCTTTGGTTTGACAACAC | 59.083 | 47.619 | 0.00 | 0.00 | 34.15 | 3.32 |
38 | 39 | 2.415357 | CGTGCTTTGGTTTGACAACACT | 60.415 | 45.455 | 0.00 | 0.00 | 34.15 | 3.55 |
39 | 40 | 3.584834 | GTGCTTTGGTTTGACAACACTT | 58.415 | 40.909 | 0.00 | 0.00 | 34.15 | 3.16 |
40 | 41 | 3.612423 | GTGCTTTGGTTTGACAACACTTC | 59.388 | 43.478 | 0.00 | 0.00 | 34.15 | 3.01 |
41 | 42 | 3.256879 | TGCTTTGGTTTGACAACACTTCA | 59.743 | 39.130 | 0.00 | 0.00 | 34.15 | 3.02 |
42 | 43 | 4.081752 | TGCTTTGGTTTGACAACACTTCAT | 60.082 | 37.500 | 0.00 | 0.00 | 34.15 | 2.57 |
43 | 44 | 4.869861 | GCTTTGGTTTGACAACACTTCATT | 59.130 | 37.500 | 0.00 | 0.00 | 34.15 | 2.57 |
44 | 45 | 5.220453 | GCTTTGGTTTGACAACACTTCATTG | 60.220 | 40.000 | 0.00 | 0.00 | 34.15 | 2.82 |
45 | 46 | 3.779759 | TGGTTTGACAACACTTCATTGC | 58.220 | 40.909 | 0.00 | 0.00 | 34.15 | 3.56 |
46 | 47 | 3.194329 | TGGTTTGACAACACTTCATTGCA | 59.806 | 39.130 | 0.00 | 0.00 | 34.15 | 4.08 |
47 | 48 | 4.180057 | GGTTTGACAACACTTCATTGCAA | 58.820 | 39.130 | 0.00 | 0.00 | 34.15 | 4.08 |
48 | 49 | 4.268405 | GGTTTGACAACACTTCATTGCAAG | 59.732 | 41.667 | 4.94 | 0.00 | 34.15 | 4.01 |
49 | 50 | 3.082698 | TGACAACACTTCATTGCAAGC | 57.917 | 42.857 | 4.94 | 0.00 | 0.00 | 4.01 |
50 | 51 | 2.426381 | TGACAACACTTCATTGCAAGCA | 59.574 | 40.909 | 4.94 | 0.00 | 0.00 | 3.91 |
51 | 52 | 3.047796 | GACAACACTTCATTGCAAGCAG | 58.952 | 45.455 | 4.94 | 2.99 | 0.00 | 4.24 |
52 | 53 | 2.689471 | ACAACACTTCATTGCAAGCAGA | 59.311 | 40.909 | 4.94 | 0.00 | 0.00 | 4.26 |
53 | 54 | 3.047796 | CAACACTTCATTGCAAGCAGAC | 58.952 | 45.455 | 4.94 | 0.00 | 0.00 | 3.51 |
54 | 55 | 2.300433 | ACACTTCATTGCAAGCAGACA | 58.700 | 42.857 | 4.94 | 0.00 | 0.00 | 3.41 |
55 | 56 | 2.889045 | ACACTTCATTGCAAGCAGACAT | 59.111 | 40.909 | 4.94 | 0.00 | 0.00 | 3.06 |
56 | 57 | 3.319972 | ACACTTCATTGCAAGCAGACATT | 59.680 | 39.130 | 4.94 | 0.00 | 0.00 | 2.71 |
57 | 58 | 4.520111 | ACACTTCATTGCAAGCAGACATTA | 59.480 | 37.500 | 4.94 | 0.00 | 0.00 | 1.90 |
58 | 59 | 4.855388 | CACTTCATTGCAAGCAGACATTAC | 59.145 | 41.667 | 4.94 | 0.00 | 0.00 | 1.89 |
59 | 60 | 4.520111 | ACTTCATTGCAAGCAGACATTACA | 59.480 | 37.500 | 4.94 | 0.00 | 0.00 | 2.41 |
60 | 61 | 5.184479 | ACTTCATTGCAAGCAGACATTACAT | 59.816 | 36.000 | 4.94 | 0.00 | 0.00 | 2.29 |
61 | 62 | 5.239359 | TCATTGCAAGCAGACATTACATC | 57.761 | 39.130 | 4.94 | 0.00 | 0.00 | 3.06 |
62 | 63 | 4.701171 | TCATTGCAAGCAGACATTACATCA | 59.299 | 37.500 | 4.94 | 0.00 | 0.00 | 3.07 |
63 | 64 | 5.358725 | TCATTGCAAGCAGACATTACATCAT | 59.641 | 36.000 | 4.94 | 0.00 | 0.00 | 2.45 |
64 | 65 | 4.888038 | TGCAAGCAGACATTACATCATC | 57.112 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
65 | 66 | 4.520179 | TGCAAGCAGACATTACATCATCT | 58.480 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
66 | 67 | 4.945543 | TGCAAGCAGACATTACATCATCTT | 59.054 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
67 | 68 | 5.065602 | TGCAAGCAGACATTACATCATCTTC | 59.934 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
68 | 69 | 5.296283 | GCAAGCAGACATTACATCATCTTCT | 59.704 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
69 | 70 | 6.183360 | GCAAGCAGACATTACATCATCTTCTT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
70 | 71 | 7.408123 | CAAGCAGACATTACATCATCTTCTTC | 58.592 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
71 | 72 | 6.647229 | AGCAGACATTACATCATCTTCTTCA | 58.353 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
72 | 73 | 7.108194 | AGCAGACATTACATCATCTTCTTCAA | 58.892 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
73 | 74 | 7.774157 | AGCAGACATTACATCATCTTCTTCAAT | 59.226 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
74 | 75 | 7.856398 | GCAGACATTACATCATCTTCTTCAATG | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
75 | 76 | 8.890718 | CAGACATTACATCATCTTCTTCAATGT | 58.109 | 33.333 | 0.00 | 0.00 | 37.89 | 2.71 |
83 | 84 | 8.017373 | ACATCATCTTCTTCAATGTAAAACACG | 58.983 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
84 | 85 | 7.722795 | TCATCTTCTTCAATGTAAAACACGA | 57.277 | 32.000 | 0.00 | 0.00 | 0.00 | 4.35 |
85 | 86 | 8.322906 | TCATCTTCTTCAATGTAAAACACGAT | 57.677 | 30.769 | 0.00 | 0.00 | 0.00 | 3.73 |
86 | 87 | 8.229811 | TCATCTTCTTCAATGTAAAACACGATG | 58.770 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
87 | 88 | 6.370593 | TCTTCTTCAATGTAAAACACGATGC | 58.629 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
88 | 89 | 5.041951 | TCTTCAATGTAAAACACGATGCC | 57.958 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
89 | 90 | 3.840890 | TCAATGTAAAACACGATGCCC | 57.159 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
90 | 91 | 3.417101 | TCAATGTAAAACACGATGCCCT | 58.583 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
91 | 92 | 4.580868 | TCAATGTAAAACACGATGCCCTA | 58.419 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
92 | 93 | 5.004448 | TCAATGTAAAACACGATGCCCTAA | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
93 | 94 | 5.473846 | TCAATGTAAAACACGATGCCCTAAA | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
94 | 95 | 5.968528 | ATGTAAAACACGATGCCCTAAAA | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
95 | 96 | 5.769484 | TGTAAAACACGATGCCCTAAAAA | 57.231 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
96 | 97 | 5.521544 | TGTAAAACACGATGCCCTAAAAAC | 58.478 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
97 | 98 | 3.653539 | AAACACGATGCCCTAAAAACC | 57.346 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
98 | 99 | 2.279935 | ACACGATGCCCTAAAAACCA | 57.720 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
99 | 100 | 2.802719 | ACACGATGCCCTAAAAACCAT | 58.197 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
100 | 101 | 3.161866 | ACACGATGCCCTAAAAACCATT | 58.838 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
101 | 102 | 4.337145 | ACACGATGCCCTAAAAACCATTA | 58.663 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
102 | 103 | 4.953579 | ACACGATGCCCTAAAAACCATTAT | 59.046 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
103 | 104 | 6.123651 | ACACGATGCCCTAAAAACCATTATA | 58.876 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
104 | 105 | 6.262273 | ACACGATGCCCTAAAAACCATTATAG | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
105 | 106 | 6.485313 | CACGATGCCCTAAAAACCATTATAGA | 59.515 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
106 | 107 | 6.710744 | ACGATGCCCTAAAAACCATTATAGAG | 59.289 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
107 | 108 | 6.149474 | CGATGCCCTAAAAACCATTATAGAGG | 59.851 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
108 | 109 | 6.584471 | TGCCCTAAAAACCATTATAGAGGA | 57.416 | 37.500 | 0.02 | 0.00 | 0.00 | 3.71 |
109 | 110 | 6.601332 | TGCCCTAAAAACCATTATAGAGGAG | 58.399 | 40.000 | 0.02 | 0.00 | 0.00 | 3.69 |
110 | 111 | 6.004574 | GCCCTAAAAACCATTATAGAGGAGG | 58.995 | 44.000 | 0.02 | 0.00 | 0.00 | 4.30 |
111 | 112 | 6.183361 | GCCCTAAAAACCATTATAGAGGAGGA | 60.183 | 42.308 | 0.02 | 0.00 | 0.00 | 3.71 |
112 | 113 | 7.454225 | CCCTAAAAACCATTATAGAGGAGGAG | 58.546 | 42.308 | 0.02 | 0.00 | 0.00 | 3.69 |
113 | 114 | 7.292591 | CCCTAAAAACCATTATAGAGGAGGAGA | 59.707 | 40.741 | 0.02 | 0.00 | 0.00 | 3.71 |
114 | 115 | 8.371699 | CCTAAAAACCATTATAGAGGAGGAGAG | 58.628 | 40.741 | 0.02 | 0.00 | 0.00 | 3.20 |
115 | 116 | 7.996758 | AAAAACCATTATAGAGGAGGAGAGA | 57.003 | 36.000 | 0.02 | 0.00 | 0.00 | 3.10 |
116 | 117 | 7.610580 | AAAACCATTATAGAGGAGGAGAGAG | 57.389 | 40.000 | 0.02 | 0.00 | 0.00 | 3.20 |
117 | 118 | 6.538209 | AACCATTATAGAGGAGGAGAGAGA | 57.462 | 41.667 | 0.02 | 0.00 | 0.00 | 3.10 |
118 | 119 | 6.538209 | ACCATTATAGAGGAGGAGAGAGAA | 57.462 | 41.667 | 0.02 | 0.00 | 0.00 | 2.87 |
119 | 120 | 7.114849 | ACCATTATAGAGGAGGAGAGAGAAT | 57.885 | 40.000 | 0.02 | 0.00 | 0.00 | 2.40 |
120 | 121 | 6.953520 | ACCATTATAGAGGAGGAGAGAGAATG | 59.046 | 42.308 | 0.02 | 0.00 | 0.00 | 2.67 |
121 | 122 | 6.953520 | CCATTATAGAGGAGGAGAGAGAATGT | 59.046 | 42.308 | 0.00 | 0.00 | 0.00 | 2.71 |
122 | 123 | 7.454380 | CCATTATAGAGGAGGAGAGAGAATGTT | 59.546 | 40.741 | 0.00 | 0.00 | 0.00 | 2.71 |
123 | 124 | 8.869109 | CATTATAGAGGAGGAGAGAGAATGTTT | 58.131 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
124 | 125 | 8.846423 | TTATAGAGGAGGAGAGAGAATGTTTT | 57.154 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
125 | 126 | 7.747809 | ATAGAGGAGGAGAGAGAATGTTTTT | 57.252 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
126 | 127 | 5.803552 | AGAGGAGGAGAGAGAATGTTTTTG | 58.196 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
127 | 128 | 5.545723 | AGAGGAGGAGAGAGAATGTTTTTGA | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
128 | 129 | 5.803552 | AGGAGGAGAGAGAATGTTTTTGAG | 58.196 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
129 | 130 | 4.394610 | GGAGGAGAGAGAATGTTTTTGAGC | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
130 | 131 | 4.978099 | AGGAGAGAGAATGTTTTTGAGCA | 58.022 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
131 | 132 | 4.759183 | AGGAGAGAGAATGTTTTTGAGCAC | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
132 | 133 | 4.083057 | GGAGAGAGAATGTTTTTGAGCACC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
133 | 134 | 4.464008 | AGAGAGAATGTTTTTGAGCACCA | 58.536 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
134 | 135 | 4.518211 | AGAGAGAATGTTTTTGAGCACCAG | 59.482 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
135 | 136 | 3.005155 | AGAGAATGTTTTTGAGCACCAGC | 59.995 | 43.478 | 0.00 | 0.00 | 42.56 | 4.85 |
136 | 137 | 2.036346 | AGAATGTTTTTGAGCACCAGCC | 59.964 | 45.455 | 0.00 | 0.00 | 43.56 | 4.85 |
137 | 138 | 1.708341 | ATGTTTTTGAGCACCAGCCT | 58.292 | 45.000 | 0.00 | 0.00 | 43.56 | 4.58 |
138 | 139 | 0.746063 | TGTTTTTGAGCACCAGCCTG | 59.254 | 50.000 | 0.00 | 0.00 | 43.56 | 4.85 |
139 | 140 | 1.032014 | GTTTTTGAGCACCAGCCTGA | 58.968 | 50.000 | 0.00 | 0.00 | 43.56 | 3.86 |
140 | 141 | 1.032014 | TTTTTGAGCACCAGCCTGAC | 58.968 | 50.000 | 0.00 | 0.00 | 43.56 | 3.51 |
141 | 142 | 0.183492 | TTTTGAGCACCAGCCTGACT | 59.817 | 50.000 | 0.00 | 0.00 | 43.56 | 3.41 |
142 | 143 | 0.183492 | TTTGAGCACCAGCCTGACTT | 59.817 | 50.000 | 0.00 | 0.00 | 43.56 | 3.01 |
143 | 144 | 0.183492 | TTGAGCACCAGCCTGACTTT | 59.817 | 50.000 | 0.00 | 0.00 | 43.56 | 2.66 |
144 | 145 | 0.183492 | TGAGCACCAGCCTGACTTTT | 59.817 | 50.000 | 0.00 | 0.00 | 43.56 | 2.27 |
145 | 146 | 0.595095 | GAGCACCAGCCTGACTTTTG | 59.405 | 55.000 | 0.00 | 0.00 | 43.56 | 2.44 |
146 | 147 | 1.006922 | GCACCAGCCTGACTTTTGC | 60.007 | 57.895 | 0.00 | 0.00 | 33.58 | 3.68 |
147 | 148 | 1.458639 | GCACCAGCCTGACTTTTGCT | 61.459 | 55.000 | 0.00 | 0.00 | 32.78 | 3.91 |
148 | 149 | 1.035139 | CACCAGCCTGACTTTTGCTT | 58.965 | 50.000 | 0.00 | 0.00 | 31.77 | 3.91 |
149 | 150 | 1.410153 | CACCAGCCTGACTTTTGCTTT | 59.590 | 47.619 | 0.00 | 0.00 | 31.77 | 3.51 |
150 | 151 | 2.622942 | CACCAGCCTGACTTTTGCTTTA | 59.377 | 45.455 | 0.00 | 0.00 | 31.77 | 1.85 |
151 | 152 | 3.068024 | CACCAGCCTGACTTTTGCTTTAA | 59.932 | 43.478 | 0.00 | 0.00 | 31.77 | 1.52 |
152 | 153 | 3.704061 | ACCAGCCTGACTTTTGCTTTAAA | 59.296 | 39.130 | 0.00 | 0.00 | 31.77 | 1.52 |
153 | 154 | 4.344968 | ACCAGCCTGACTTTTGCTTTAAAT | 59.655 | 37.500 | 0.00 | 0.00 | 31.77 | 1.40 |
154 | 155 | 5.538433 | ACCAGCCTGACTTTTGCTTTAAATA | 59.462 | 36.000 | 0.00 | 0.00 | 31.77 | 1.40 |
155 | 156 | 6.041523 | ACCAGCCTGACTTTTGCTTTAAATAA | 59.958 | 34.615 | 0.00 | 0.00 | 31.77 | 1.40 |
156 | 157 | 7.099120 | CCAGCCTGACTTTTGCTTTAAATAAT | 58.901 | 34.615 | 0.00 | 0.00 | 31.77 | 1.28 |
157 | 158 | 7.063780 | CCAGCCTGACTTTTGCTTTAAATAATG | 59.936 | 37.037 | 0.00 | 0.00 | 31.77 | 1.90 |
158 | 159 | 7.599998 | CAGCCTGACTTTTGCTTTAAATAATGT | 59.400 | 33.333 | 0.00 | 0.00 | 31.77 | 2.71 |
159 | 160 | 8.802267 | AGCCTGACTTTTGCTTTAAATAATGTA | 58.198 | 29.630 | 0.00 | 0.00 | 29.17 | 2.29 |
160 | 161 | 9.076596 | GCCTGACTTTTGCTTTAAATAATGTAG | 57.923 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
171 | 172 | 9.678941 | GCTTTAAATAATGTAGAAGTAATGCCC | 57.321 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
227 | 228 | 6.723977 | AGTAATGCCCTAAAATTTGAGAACCA | 59.276 | 34.615 | 3.89 | 0.00 | 0.00 | 3.67 |
228 | 229 | 4.864704 | TGCCCTAAAATTTGAGAACCAC | 57.135 | 40.909 | 3.89 | 0.00 | 0.00 | 4.16 |
244 | 245 | 4.761739 | AGAACCACGTGAAACATGATGATT | 59.238 | 37.500 | 19.30 | 0.00 | 35.74 | 2.57 |
246 | 247 | 4.797471 | ACCACGTGAAACATGATGATTTG | 58.203 | 39.130 | 19.30 | 0.00 | 35.74 | 2.32 |
247 | 248 | 4.518590 | ACCACGTGAAACATGATGATTTGA | 59.481 | 37.500 | 19.30 | 0.00 | 35.74 | 2.69 |
248 | 249 | 5.183713 | ACCACGTGAAACATGATGATTTGAT | 59.816 | 36.000 | 19.30 | 0.00 | 35.74 | 2.57 |
249 | 250 | 5.513849 | CCACGTGAAACATGATGATTTGATG | 59.486 | 40.000 | 19.30 | 0.00 | 35.74 | 3.07 |
250 | 251 | 5.513849 | CACGTGAAACATGATGATTTGATGG | 59.486 | 40.000 | 10.90 | 0.00 | 35.74 | 3.51 |
251 | 252 | 4.501559 | CGTGAAACATGATGATTTGATGGC | 59.498 | 41.667 | 0.00 | 0.00 | 35.74 | 4.40 |
252 | 253 | 4.807304 | GTGAAACATGATGATTTGATGGCC | 59.193 | 41.667 | 0.00 | 0.00 | 36.32 | 5.36 |
253 | 254 | 3.720949 | AACATGATGATTTGATGGCCG | 57.279 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
254 | 255 | 1.958579 | ACATGATGATTTGATGGCCGG | 59.041 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
255 | 256 | 2.232399 | CATGATGATTTGATGGCCGGA | 58.768 | 47.619 | 5.05 | 0.00 | 0.00 | 5.14 |
256 | 257 | 2.433662 | TGATGATTTGATGGCCGGAA | 57.566 | 45.000 | 5.05 | 0.00 | 0.00 | 4.30 |
257 | 258 | 2.300433 | TGATGATTTGATGGCCGGAAG | 58.700 | 47.619 | 5.05 | 0.00 | 0.00 | 3.46 |
271 | 272 | 4.144703 | GAAGGTCGGGAGGCGGAC | 62.145 | 72.222 | 0.00 | 0.00 | 33.19 | 4.79 |
293 | 294 | 0.605589 | AACGACAGGAAGGAGCTCAG | 59.394 | 55.000 | 17.19 | 0.16 | 0.00 | 3.35 |
295 | 296 | 1.153667 | GACAGGAAGGAGCTCAGCG | 60.154 | 63.158 | 17.19 | 0.00 | 0.00 | 5.18 |
300 | 301 | 2.366167 | AAGGAGCTCAGCGGGGAT | 60.366 | 61.111 | 17.19 | 0.00 | 0.00 | 3.85 |
358 | 359 | 0.992431 | AGGGATGATGGCAGGAGCTT | 60.992 | 55.000 | 0.00 | 0.00 | 41.70 | 3.74 |
366 | 367 | 4.785453 | GCAGGAGCTTGGGGACGG | 62.785 | 72.222 | 0.00 | 0.00 | 37.91 | 4.79 |
410 | 411 | 4.086178 | CACGAGCTCGACGACCGT | 62.086 | 66.667 | 40.58 | 16.01 | 43.02 | 4.83 |
414 | 415 | 3.978867 | GAGCTCGACGACCGTGACG | 62.979 | 68.421 | 0.00 | 0.00 | 39.75 | 4.35 |
441 | 442 | 4.506255 | GAAGGGCGGGATGGGGTG | 62.506 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
446 | 447 | 4.041762 | GCGGGATGGGGTGGACAA | 62.042 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
447 | 448 | 2.045340 | CGGGATGGGGTGGACAAC | 60.045 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
448 | 449 | 2.045340 | GGGATGGGGTGGACAACG | 60.045 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
449 | 450 | 2.754375 | GGATGGGGTGGACAACGT | 59.246 | 61.111 | 0.00 | 0.00 | 0.00 | 3.99 |
450 | 451 | 1.074248 | GGATGGGGTGGACAACGTT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.99 |
451 | 452 | 1.241315 | GGATGGGGTGGACAACGTTG | 61.241 | 60.000 | 26.20 | 26.20 | 0.00 | 4.10 |
452 | 453 | 1.228429 | ATGGGGTGGACAACGTTGG | 60.228 | 57.895 | 30.34 | 13.78 | 0.00 | 3.77 |
453 | 454 | 3.292159 | GGGGTGGACAACGTTGGC | 61.292 | 66.667 | 30.34 | 28.49 | 34.70 | 4.52 |
458 | 459 | 3.047877 | GGACAACGTTGGCGGGAG | 61.048 | 66.667 | 30.34 | 5.61 | 43.45 | 4.30 |
481 | 482 | 1.265095 | CACAACTGTGTAGCCAGCTTG | 59.735 | 52.381 | 0.00 | 0.00 | 40.96 | 4.01 |
495 | 496 | 2.039951 | CTTGGAGGGGTCGGGGTA | 59.960 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
511 | 512 | 1.438384 | GTAGCCGCGACGTAGATCG | 60.438 | 63.158 | 8.23 | 0.00 | 45.09 | 3.69 |
548 | 549 | 1.028868 | GTGAGAGGCTTCATGGTGGC | 61.029 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
550 | 551 | 2.440980 | GAGGCTTCATGGTGGCCC | 60.441 | 66.667 | 16.70 | 8.26 | 46.31 | 5.80 |
605 | 606 | 1.720694 | AAAGTTCACGGTGGCGGTTG | 61.721 | 55.000 | 8.50 | 0.00 | 0.00 | 3.77 |
607 | 608 | 4.939368 | TTCACGGTGGCGGTTGGG | 62.939 | 66.667 | 8.50 | 0.00 | 0.00 | 4.12 |
610 | 611 | 4.941309 | ACGGTGGCGGTTGGGTTC | 62.941 | 66.667 | 0.00 | 0.00 | 0.00 | 3.62 |
612 | 613 | 4.589675 | GGTGGCGGTTGGGTTCCA | 62.590 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
613 | 614 | 2.983592 | GTGGCGGTTGGGTTCCAG | 60.984 | 66.667 | 0.00 | 0.00 | 33.81 | 3.86 |
614 | 615 | 4.966787 | TGGCGGTTGGGTTCCAGC | 62.967 | 66.667 | 0.00 | 0.00 | 33.81 | 4.85 |
616 | 617 | 3.365265 | GCGGTTGGGTTCCAGCTG | 61.365 | 66.667 | 6.78 | 6.78 | 42.76 | 4.24 |
617 | 618 | 2.113139 | CGGTTGGGTTCCAGCTGT | 59.887 | 61.111 | 13.81 | 0.00 | 36.55 | 4.40 |
618 | 619 | 1.528309 | CGGTTGGGTTCCAGCTGTT | 60.528 | 57.895 | 13.81 | 0.00 | 36.55 | 3.16 |
619 | 620 | 1.106944 | CGGTTGGGTTCCAGCTGTTT | 61.107 | 55.000 | 13.81 | 0.00 | 36.55 | 2.83 |
634 | 635 | 2.436417 | CTGTTTTAGGGCAGCTGCTAA | 58.564 | 47.619 | 35.82 | 24.59 | 41.70 | 3.09 |
686 | 689 | 9.154847 | GAGTTAAAATTTAGGATTGCTGCAAAT | 57.845 | 29.630 | 20.06 | 10.83 | 0.00 | 2.32 |
725 | 728 | 4.702131 | AGAGATACACCATTTGTTGAAGGC | 59.298 | 41.667 | 0.00 | 0.00 | 39.91 | 4.35 |
771 | 774 | 1.137459 | TGCTCTTACACGCGCATACG | 61.137 | 55.000 | 5.73 | 0.00 | 44.07 | 3.06 |
805 | 809 | 1.308047 | CTTGCTTGCTGTGGTGTACA | 58.692 | 50.000 | 0.00 | 0.00 | 37.78 | 2.90 |
817 | 850 | 6.072728 | TGCTGTGGTGTACAAAGAATATTGAC | 60.073 | 38.462 | 0.00 | 0.00 | 36.45 | 3.18 |
818 | 851 | 6.622896 | GCTGTGGTGTACAAAGAATATTGACC | 60.623 | 42.308 | 0.00 | 0.00 | 36.45 | 4.02 |
833 | 866 | 1.098869 | TGACCACAACGTGCACAAAT | 58.901 | 45.000 | 18.64 | 0.00 | 31.34 | 2.32 |
969 | 1015 | 2.506438 | CGAGTCGCCGTTCCCTTC | 60.506 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
1507 | 1554 | 1.196808 | ACTGCTCGTTTTACCGCATTG | 59.803 | 47.619 | 0.00 | 0.00 | 0.00 | 2.82 |
1517 | 1564 | 1.810959 | TACCGCATTGTAACGCCTTT | 58.189 | 45.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1546 | 1593 | 4.400251 | TGTACTGTTCTTGGTATACTCGGG | 59.600 | 45.833 | 2.25 | 0.00 | 0.00 | 5.14 |
1559 | 1606 | 5.300286 | GGTATACTCGGGTATTACTGTGTGT | 59.700 | 44.000 | 14.31 | 0.00 | 39.19 | 3.72 |
1571 | 1618 | 0.174389 | CTGTGTGTCTGGCGAGCTAT | 59.826 | 55.000 | 0.00 | 0.00 | 0.00 | 2.97 |
1635 | 1683 | 8.866956 | GGTATGTTAGTTAATGTGTACACAGAC | 58.133 | 37.037 | 30.65 | 25.94 | 45.48 | 3.51 |
1661 | 1709 | 5.526111 | ACAGCTAAAGCAAAAGTAGAACGAA | 59.474 | 36.000 | 4.54 | 0.00 | 45.16 | 3.85 |
1684 | 1732 | 8.346300 | CGAAGTTGTAGAGAATAGAGATGCTAA | 58.654 | 37.037 | 0.00 | 0.00 | 31.66 | 3.09 |
1700 | 1748 | 2.557924 | TGCTAATTGACTTGGTTGGCTG | 59.442 | 45.455 | 0.00 | 0.00 | 31.60 | 4.85 |
1709 | 1757 | 3.939592 | GACTTGGTTGGCTGTATTAGTCC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
1715 | 1763 | 1.133598 | TGGCTGTATTAGTCCGACGTG | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
1742 | 1798 | 4.389890 | TTCAACTTGCTTGCTCACAAAT | 57.610 | 36.364 | 0.00 | 0.00 | 34.74 | 2.32 |
1831 | 1890 | 3.929610 | GCTGTATGACCAGAAGTGACTTC | 59.070 | 47.826 | 17.22 | 17.22 | 40.45 | 3.01 |
1856 | 1915 | 7.801315 | TCAATTTCACACGCTAGTTATTTTGTC | 59.199 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2373 | 2434 | 4.900635 | TTTGGAACTCTTGAGTGCTTTC | 57.099 | 40.909 | 8.49 | 1.07 | 0.00 | 2.62 |
2428 | 2619 | 7.071321 | CCTTCCAGTATGACTCTTATTTACCCT | 59.929 | 40.741 | 0.00 | 0.00 | 39.69 | 4.34 |
2486 | 2677 | 6.602179 | TCTTTGAATCTGATTTGTTAGTGCG | 58.398 | 36.000 | 4.11 | 0.00 | 0.00 | 5.34 |
2487 | 2678 | 5.940192 | TTGAATCTGATTTGTTAGTGCGT | 57.060 | 34.783 | 4.11 | 0.00 | 0.00 | 5.24 |
2548 | 2739 | 2.559698 | TGGAATTCGGAAGTTGCTCA | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2558 | 2749 | 7.857734 | TTCGGAAGTTGCTCATAATTGATAA | 57.142 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2583 | 2774 | 2.111669 | CTGGTCACCACTGCAGCA | 59.888 | 61.111 | 15.27 | 0.16 | 0.00 | 4.41 |
3181 | 3373 | 8.246180 | CACAAATCTTTAGTTCAGGTATGCATT | 58.754 | 33.333 | 3.54 | 0.00 | 0.00 | 3.56 |
3202 | 3408 | 7.095229 | TGCATTGTGAGTAGTAGATTTTGTCAC | 60.095 | 37.037 | 0.00 | 0.00 | 34.68 | 3.67 |
3330 | 3541 | 9.274206 | GGAAAATAATGTAGAAGATCAGGGTAC | 57.726 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
3442 | 3654 | 6.031751 | AGAATGAAGAACTGAGTAGTGGAC | 57.968 | 41.667 | 0.00 | 0.00 | 37.19 | 4.02 |
3729 | 3941 | 4.679373 | AGGTCTACCTGCTTGTGATATG | 57.321 | 45.455 | 0.00 | 0.00 | 46.55 | 1.78 |
4124 | 4336 | 9.578576 | TTACTCGTATAATGTAATGTACTCCCT | 57.421 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
4125 | 4337 | 8.108551 | ACTCGTATAATGTAATGTACTCCCTC | 57.891 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
4126 | 4338 | 7.943447 | ACTCGTATAATGTAATGTACTCCCTCT | 59.057 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
4127 | 4339 | 8.107399 | TCGTATAATGTAATGTACTCCCTCTG | 57.893 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
4128 | 4340 | 7.722728 | TCGTATAATGTAATGTACTCCCTCTGT | 59.277 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
4129 | 4341 | 8.021973 | CGTATAATGTAATGTACTCCCTCTGTC | 58.978 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
4130 | 4342 | 5.615925 | AATGTAATGTACTCCCTCTGTCC | 57.384 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
4131 | 4343 | 3.371965 | TGTAATGTACTCCCTCTGTCCC | 58.628 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4132 | 4344 | 2.642171 | AATGTACTCCCTCTGTCCCA | 57.358 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4133 | 4345 | 2.877154 | ATGTACTCCCTCTGTCCCAT | 57.123 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4134 | 4346 | 3.993658 | ATGTACTCCCTCTGTCCCATA | 57.006 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
4135 | 4347 | 3.769189 | TGTACTCCCTCTGTCCCATAA | 57.231 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
4136 | 4348 | 4.280789 | TGTACTCCCTCTGTCCCATAAT | 57.719 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
4137 | 4349 | 5.412617 | TGTACTCCCTCTGTCCCATAATA | 57.587 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
4138 | 4350 | 5.977533 | TGTACTCCCTCTGTCCCATAATAT | 58.022 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
4139 | 4351 | 7.111136 | TGTACTCCCTCTGTCCCATAATATA | 57.889 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
4140 | 4352 | 7.541074 | TGTACTCCCTCTGTCCCATAATATAA | 58.459 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
4141 | 4353 | 7.674348 | TGTACTCCCTCTGTCCCATAATATAAG | 59.326 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
4142 | 4354 | 6.875469 | ACTCCCTCTGTCCCATAATATAAGA | 58.125 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4143 | 4355 | 7.313731 | ACTCCCTCTGTCCCATAATATAAGAA | 58.686 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
4144 | 4356 | 7.235812 | ACTCCCTCTGTCCCATAATATAAGAAC | 59.764 | 40.741 | 0.00 | 0.00 | 0.00 | 3.01 |
4145 | 4357 | 6.210784 | TCCCTCTGTCCCATAATATAAGAACG | 59.789 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
4146 | 4358 | 6.014499 | CCCTCTGTCCCATAATATAAGAACGT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 3.99 |
4147 | 4359 | 7.442656 | CCTCTGTCCCATAATATAAGAACGTT | 58.557 | 38.462 | 0.00 | 0.00 | 0.00 | 3.99 |
4148 | 4360 | 7.931948 | CCTCTGTCCCATAATATAAGAACGTTT | 59.068 | 37.037 | 0.46 | 0.00 | 0.00 | 3.60 |
4149 | 4361 | 9.326413 | CTCTGTCCCATAATATAAGAACGTTTT | 57.674 | 33.333 | 0.46 | 0.00 | 0.00 | 2.43 |
4150 | 4362 | 9.675464 | TCTGTCCCATAATATAAGAACGTTTTT | 57.325 | 29.630 | 9.22 | 9.22 | 0.00 | 1.94 |
4151 | 4363 | 9.931210 | CTGTCCCATAATATAAGAACGTTTTTC | 57.069 | 33.333 | 7.42 | 0.00 | 0.00 | 2.29 |
4152 | 4364 | 9.451002 | TGTCCCATAATATAAGAACGTTTTTCA | 57.549 | 29.630 | 7.42 | 0.00 | 0.00 | 2.69 |
4164 | 4376 | 8.950403 | AAGAACGTTTTTCAATCTATGTTAGC | 57.050 | 30.769 | 0.46 | 0.00 | 0.00 | 3.09 |
4165 | 4377 | 8.324163 | AGAACGTTTTTCAATCTATGTTAGCT | 57.676 | 30.769 | 0.46 | 0.00 | 0.00 | 3.32 |
4166 | 4378 | 8.784043 | AGAACGTTTTTCAATCTATGTTAGCTT | 58.216 | 29.630 | 0.46 | 0.00 | 0.00 | 3.74 |
4167 | 4379 | 8.728088 | AACGTTTTTCAATCTATGTTAGCTTG | 57.272 | 30.769 | 0.00 | 0.00 | 34.21 | 4.01 |
4168 | 4380 | 8.094798 | ACGTTTTTCAATCTATGTTAGCTTGA | 57.905 | 30.769 | 0.00 | 0.00 | 38.66 | 3.02 |
4169 | 4381 | 8.564574 | ACGTTTTTCAATCTATGTTAGCTTGAA | 58.435 | 29.630 | 8.65 | 8.65 | 44.46 | 2.69 |
4174 | 4386 | 8.948853 | TTCAATCTATGTTAGCTTGAAAAACG | 57.051 | 30.769 | 9.79 | 0.00 | 43.70 | 3.60 |
4175 | 4387 | 8.094798 | TCAATCTATGTTAGCTTGAAAAACGT | 57.905 | 30.769 | 0.00 | 0.00 | 37.81 | 3.99 |
4176 | 4388 | 8.564574 | TCAATCTATGTTAGCTTGAAAAACGTT | 58.435 | 29.630 | 0.00 | 0.00 | 37.81 | 3.99 |
4177 | 4389 | 8.840867 | CAATCTATGTTAGCTTGAAAAACGTTC | 58.159 | 33.333 | 0.00 | 0.00 | 34.69 | 3.95 |
4178 | 4390 | 7.724305 | TCTATGTTAGCTTGAAAAACGTTCT | 57.276 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4179 | 4391 | 8.149973 | TCTATGTTAGCTTGAAAAACGTTCTT | 57.850 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
4180 | 4392 | 9.263538 | TCTATGTTAGCTTGAAAAACGTTCTTA | 57.736 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
4189 | 4401 | 9.233232 | GCTTGAAAAACGTTCTTATATTATGGG | 57.767 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
4192 | 4404 | 8.605746 | TGAAAAACGTTCTTATATTATGGGACG | 58.394 | 33.333 | 0.00 | 9.33 | 0.00 | 4.79 |
4193 | 4405 | 7.486802 | AAAACGTTCTTATATTATGGGACGG | 57.513 | 36.000 | 0.00 | 1.76 | 0.00 | 4.79 |
4194 | 4406 | 6.409524 | AACGTTCTTATATTATGGGACGGA | 57.590 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
4195 | 4407 | 6.022163 | ACGTTCTTATATTATGGGACGGAG | 57.978 | 41.667 | 13.18 | 0.00 | 0.00 | 4.63 |
4196 | 4408 | 5.047519 | ACGTTCTTATATTATGGGACGGAGG | 60.048 | 44.000 | 13.18 | 0.00 | 0.00 | 4.30 |
4197 | 4409 | 5.623824 | CGTTCTTATATTATGGGACGGAGGG | 60.624 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4198 | 4410 | 5.279562 | TCTTATATTATGGGACGGAGGGA | 57.720 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
4199 | 4411 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
4200 | 4412 | 3.562108 | ATATTATGGGACGGAGGGAGT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4201 | 4413 | 4.687262 | ATATTATGGGACGGAGGGAGTA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
4667 | 4888 | 6.930731 | ACATCAGGCATTTTATTTTTACGGT | 58.069 | 32.000 | 0.00 | 0.00 | 0.00 | 4.83 |
4716 | 4937 | 0.107017 | GGTGTAGCATCTGTGGGCAT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4840 | 5061 | 3.126831 | GTGCAGCATGTATAGTCCAGTC | 58.873 | 50.000 | 0.00 | 0.00 | 39.31 | 3.51 |
4843 | 5064 | 4.054671 | GCAGCATGTATAGTCCAGTCTTC | 58.945 | 47.826 | 0.00 | 0.00 | 39.31 | 2.87 |
4845 | 5066 | 5.046529 | CAGCATGTATAGTCCAGTCTTCAC | 58.953 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
4961 | 5182 | 8.911918 | TCTAAGAAGGCAAGTTATTTGTGTTA | 57.088 | 30.769 | 0.00 | 0.00 | 39.08 | 2.41 |
5008 | 5236 | 6.037172 | GTCTTCGGAAGAGCATTAAAATAGCA | 59.963 | 38.462 | 20.23 | 0.00 | 43.69 | 3.49 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.538037 | GCACGTGTACGCATCATCATAA | 59.462 | 45.455 | 18.38 | 0.00 | 44.43 | 1.90 |
1 | 2 | 2.124122 | GCACGTGTACGCATCATCATA | 58.876 | 47.619 | 18.38 | 0.00 | 44.43 | 2.15 |
2 | 3 | 0.930310 | GCACGTGTACGCATCATCAT | 59.070 | 50.000 | 18.38 | 0.00 | 44.43 | 2.45 |
3 | 4 | 0.108851 | AGCACGTGTACGCATCATCA | 60.109 | 50.000 | 18.38 | 0.00 | 44.43 | 3.07 |
4 | 5 | 0.999406 | AAGCACGTGTACGCATCATC | 59.001 | 50.000 | 18.38 | 0.00 | 44.43 | 2.92 |
5 | 6 | 1.128507 | CAAAGCACGTGTACGCATCAT | 59.871 | 47.619 | 18.38 | 0.00 | 44.43 | 2.45 |
6 | 7 | 0.510790 | CAAAGCACGTGTACGCATCA | 59.489 | 50.000 | 18.38 | 0.00 | 44.43 | 3.07 |
7 | 8 | 0.179225 | CCAAAGCACGTGTACGCATC | 60.179 | 55.000 | 18.38 | 0.00 | 44.43 | 3.91 |
8 | 9 | 0.882927 | ACCAAAGCACGTGTACGCAT | 60.883 | 50.000 | 18.38 | 0.00 | 44.43 | 4.73 |
9 | 10 | 1.090625 | AACCAAAGCACGTGTACGCA | 61.091 | 50.000 | 18.38 | 0.00 | 44.43 | 5.24 |
10 | 11 | 0.028374 | AAACCAAAGCACGTGTACGC | 59.972 | 50.000 | 18.38 | 1.83 | 44.43 | 4.42 |
11 | 12 | 1.328069 | TCAAACCAAAGCACGTGTACG | 59.672 | 47.619 | 18.38 | 2.43 | 46.33 | 3.67 |
12 | 13 | 2.096174 | TGTCAAACCAAAGCACGTGTAC | 59.904 | 45.455 | 18.38 | 0.57 | 0.00 | 2.90 |
13 | 14 | 2.357075 | TGTCAAACCAAAGCACGTGTA | 58.643 | 42.857 | 18.38 | 0.00 | 0.00 | 2.90 |
14 | 15 | 1.169577 | TGTCAAACCAAAGCACGTGT | 58.830 | 45.000 | 18.38 | 0.68 | 0.00 | 4.49 |
15 | 16 | 1.917303 | GTTGTCAAACCAAAGCACGTG | 59.083 | 47.619 | 12.28 | 12.28 | 0.00 | 4.49 |
16 | 17 | 1.542030 | TGTTGTCAAACCAAAGCACGT | 59.458 | 42.857 | 0.00 | 0.00 | 35.25 | 4.49 |
17 | 18 | 1.917303 | GTGTTGTCAAACCAAAGCACG | 59.083 | 47.619 | 0.00 | 0.00 | 35.25 | 5.34 |
18 | 19 | 3.230743 | AGTGTTGTCAAACCAAAGCAC | 57.769 | 42.857 | 0.00 | 0.00 | 35.25 | 4.40 |
19 | 20 | 3.256879 | TGAAGTGTTGTCAAACCAAAGCA | 59.743 | 39.130 | 0.00 | 0.00 | 35.25 | 3.91 |
20 | 21 | 3.843999 | TGAAGTGTTGTCAAACCAAAGC | 58.156 | 40.909 | 0.00 | 0.00 | 35.25 | 3.51 |
21 | 22 | 5.220453 | GCAATGAAGTGTTGTCAAACCAAAG | 60.220 | 40.000 | 0.00 | 0.00 | 35.25 | 2.77 |
22 | 23 | 4.629200 | GCAATGAAGTGTTGTCAAACCAAA | 59.371 | 37.500 | 0.00 | 0.00 | 35.25 | 3.28 |
23 | 24 | 4.180057 | GCAATGAAGTGTTGTCAAACCAA | 58.820 | 39.130 | 0.00 | 0.00 | 35.25 | 3.67 |
24 | 25 | 3.194329 | TGCAATGAAGTGTTGTCAAACCA | 59.806 | 39.130 | 0.00 | 0.00 | 35.25 | 3.67 |
25 | 26 | 3.779759 | TGCAATGAAGTGTTGTCAAACC | 58.220 | 40.909 | 0.00 | 0.00 | 35.25 | 3.27 |
26 | 27 | 4.259930 | GCTTGCAATGAAGTGTTGTCAAAC | 60.260 | 41.667 | 0.00 | 0.00 | 36.78 | 2.93 |
27 | 28 | 3.864583 | GCTTGCAATGAAGTGTTGTCAAA | 59.135 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
28 | 29 | 3.119209 | TGCTTGCAATGAAGTGTTGTCAA | 60.119 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
29 | 30 | 2.426381 | TGCTTGCAATGAAGTGTTGTCA | 59.574 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
30 | 31 | 3.047796 | CTGCTTGCAATGAAGTGTTGTC | 58.952 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
31 | 32 | 2.689471 | TCTGCTTGCAATGAAGTGTTGT | 59.311 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
32 | 33 | 3.047796 | GTCTGCTTGCAATGAAGTGTTG | 58.952 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
33 | 34 | 2.689471 | TGTCTGCTTGCAATGAAGTGTT | 59.311 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
34 | 35 | 2.300433 | TGTCTGCTTGCAATGAAGTGT | 58.700 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
35 | 36 | 3.570926 | ATGTCTGCTTGCAATGAAGTG | 57.429 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
36 | 37 | 4.520111 | TGTAATGTCTGCTTGCAATGAAGT | 59.480 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
37 | 38 | 5.050644 | TGTAATGTCTGCTTGCAATGAAG | 57.949 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
38 | 39 | 5.183522 | TGATGTAATGTCTGCTTGCAATGAA | 59.816 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
39 | 40 | 4.701171 | TGATGTAATGTCTGCTTGCAATGA | 59.299 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
40 | 41 | 4.989044 | TGATGTAATGTCTGCTTGCAATG | 58.011 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
41 | 42 | 5.593095 | AGATGATGTAATGTCTGCTTGCAAT | 59.407 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
42 | 43 | 4.945543 | AGATGATGTAATGTCTGCTTGCAA | 59.054 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
43 | 44 | 4.520179 | AGATGATGTAATGTCTGCTTGCA | 58.480 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
44 | 45 | 5.296283 | AGAAGATGATGTAATGTCTGCTTGC | 59.704 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
45 | 46 | 6.922247 | AGAAGATGATGTAATGTCTGCTTG | 57.078 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
46 | 47 | 7.108194 | TGAAGAAGATGATGTAATGTCTGCTT | 58.892 | 34.615 | 0.00 | 0.00 | 36.66 | 3.91 |
47 | 48 | 6.647229 | TGAAGAAGATGATGTAATGTCTGCT | 58.353 | 36.000 | 0.00 | 0.00 | 27.59 | 4.24 |
48 | 49 | 6.915544 | TGAAGAAGATGATGTAATGTCTGC | 57.084 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
49 | 50 | 8.890718 | ACATTGAAGAAGATGATGTAATGTCTG | 58.109 | 33.333 | 0.00 | 0.00 | 33.65 | 3.51 |
57 | 58 | 8.017373 | CGTGTTTTACATTGAAGAAGATGATGT | 58.983 | 33.333 | 0.00 | 0.00 | 35.36 | 3.06 |
58 | 59 | 8.229811 | TCGTGTTTTACATTGAAGAAGATGATG | 58.770 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
59 | 60 | 8.322906 | TCGTGTTTTACATTGAAGAAGATGAT | 57.677 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
60 | 61 | 7.722795 | TCGTGTTTTACATTGAAGAAGATGA | 57.277 | 32.000 | 0.00 | 0.00 | 0.00 | 2.92 |
61 | 62 | 7.007725 | GCATCGTGTTTTACATTGAAGAAGATG | 59.992 | 37.037 | 0.00 | 0.00 | 37.75 | 2.90 |
62 | 63 | 7.023575 | GCATCGTGTTTTACATTGAAGAAGAT | 58.976 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
63 | 64 | 6.370593 | GCATCGTGTTTTACATTGAAGAAGA | 58.629 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
64 | 65 | 5.569059 | GGCATCGTGTTTTACATTGAAGAAG | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
65 | 66 | 5.457140 | GGCATCGTGTTTTACATTGAAGAA | 58.543 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
66 | 67 | 4.083003 | GGGCATCGTGTTTTACATTGAAGA | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
67 | 68 | 4.082787 | AGGGCATCGTGTTTTACATTGAAG | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 69 | 3.823873 | AGGGCATCGTGTTTTACATTGAA | 59.176 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
69 | 70 | 3.417101 | AGGGCATCGTGTTTTACATTGA | 58.583 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
70 | 71 | 3.848272 | AGGGCATCGTGTTTTACATTG | 57.152 | 42.857 | 0.00 | 0.00 | 0.00 | 2.82 |
71 | 72 | 5.968528 | TTTAGGGCATCGTGTTTTACATT | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
72 | 73 | 5.968528 | TTTTAGGGCATCGTGTTTTACAT | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
73 | 74 | 5.507650 | GGTTTTTAGGGCATCGTGTTTTACA | 60.508 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
74 | 75 | 4.919168 | GGTTTTTAGGGCATCGTGTTTTAC | 59.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
75 | 76 | 4.583489 | TGGTTTTTAGGGCATCGTGTTTTA | 59.417 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
76 | 77 | 3.385111 | TGGTTTTTAGGGCATCGTGTTTT | 59.615 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
77 | 78 | 2.959707 | TGGTTTTTAGGGCATCGTGTTT | 59.040 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
78 | 79 | 2.588620 | TGGTTTTTAGGGCATCGTGTT | 58.411 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
79 | 80 | 2.279935 | TGGTTTTTAGGGCATCGTGT | 57.720 | 45.000 | 0.00 | 0.00 | 0.00 | 4.49 |
80 | 81 | 3.866883 | AATGGTTTTTAGGGCATCGTG | 57.133 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
81 | 82 | 6.597562 | TCTATAATGGTTTTTAGGGCATCGT | 58.402 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
82 | 83 | 6.149474 | CCTCTATAATGGTTTTTAGGGCATCG | 59.851 | 42.308 | 0.00 | 0.00 | 0.00 | 3.84 |
83 | 84 | 7.231467 | TCCTCTATAATGGTTTTTAGGGCATC | 58.769 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
84 | 85 | 7.161715 | TCCTCTATAATGGTTTTTAGGGCAT | 57.838 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
85 | 86 | 6.410388 | CCTCCTCTATAATGGTTTTTAGGGCA | 60.410 | 42.308 | 0.00 | 0.00 | 0.00 | 5.36 |
86 | 87 | 6.004574 | CCTCCTCTATAATGGTTTTTAGGGC | 58.995 | 44.000 | 0.00 | 0.00 | 0.00 | 5.19 |
87 | 88 | 7.292591 | TCTCCTCCTCTATAATGGTTTTTAGGG | 59.707 | 40.741 | 0.00 | 0.00 | 0.00 | 3.53 |
88 | 89 | 8.263854 | TCTCCTCCTCTATAATGGTTTTTAGG | 57.736 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
89 | 90 | 9.148879 | TCTCTCCTCCTCTATAATGGTTTTTAG | 57.851 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
90 | 91 | 9.148879 | CTCTCTCCTCCTCTATAATGGTTTTTA | 57.851 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
91 | 92 | 7.846823 | TCTCTCTCCTCCTCTATAATGGTTTTT | 59.153 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
92 | 93 | 7.366226 | TCTCTCTCCTCCTCTATAATGGTTTT | 58.634 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
93 | 94 | 6.928202 | TCTCTCTCCTCCTCTATAATGGTTT | 58.072 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
94 | 95 | 6.538209 | TCTCTCTCCTCCTCTATAATGGTT | 57.462 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
95 | 96 | 6.538209 | TTCTCTCTCCTCCTCTATAATGGT | 57.462 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
96 | 97 | 6.953520 | ACATTCTCTCTCCTCCTCTATAATGG | 59.046 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
97 | 98 | 8.421249 | AACATTCTCTCTCCTCCTCTATAATG | 57.579 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
98 | 99 | 9.445973 | AAAACATTCTCTCTCCTCCTCTATAAT | 57.554 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
99 | 100 | 8.846423 | AAAACATTCTCTCTCCTCCTCTATAA | 57.154 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
100 | 101 | 8.700051 | CAAAAACATTCTCTCTCCTCCTCTATA | 58.300 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
101 | 102 | 7.401493 | TCAAAAACATTCTCTCTCCTCCTCTAT | 59.599 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
102 | 103 | 6.726299 | TCAAAAACATTCTCTCTCCTCCTCTA | 59.274 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
103 | 104 | 5.545723 | TCAAAAACATTCTCTCTCCTCCTCT | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
104 | 105 | 5.799213 | TCAAAAACATTCTCTCTCCTCCTC | 58.201 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
105 | 106 | 5.802821 | GCTCAAAAACATTCTCTCTCCTCCT | 60.803 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
106 | 107 | 4.394610 | GCTCAAAAACATTCTCTCTCCTCC | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
107 | 108 | 4.999950 | TGCTCAAAAACATTCTCTCTCCTC | 59.000 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
108 | 109 | 4.759183 | GTGCTCAAAAACATTCTCTCTCCT | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
109 | 110 | 4.083057 | GGTGCTCAAAAACATTCTCTCTCC | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
110 | 111 | 4.516698 | TGGTGCTCAAAAACATTCTCTCTC | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
111 | 112 | 4.464008 | TGGTGCTCAAAAACATTCTCTCT | 58.536 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
112 | 113 | 4.791974 | CTGGTGCTCAAAAACATTCTCTC | 58.208 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
113 | 114 | 3.005155 | GCTGGTGCTCAAAAACATTCTCT | 59.995 | 43.478 | 0.00 | 0.00 | 36.03 | 3.10 |
114 | 115 | 3.311966 | GCTGGTGCTCAAAAACATTCTC | 58.688 | 45.455 | 0.00 | 0.00 | 36.03 | 2.87 |
115 | 116 | 2.036346 | GGCTGGTGCTCAAAAACATTCT | 59.964 | 45.455 | 0.00 | 0.00 | 39.59 | 2.40 |
116 | 117 | 2.036346 | AGGCTGGTGCTCAAAAACATTC | 59.964 | 45.455 | 0.00 | 0.00 | 39.59 | 2.67 |
117 | 118 | 2.041701 | AGGCTGGTGCTCAAAAACATT | 58.958 | 42.857 | 0.00 | 0.00 | 39.59 | 2.71 |
118 | 119 | 1.342174 | CAGGCTGGTGCTCAAAAACAT | 59.658 | 47.619 | 6.61 | 0.00 | 39.59 | 2.71 |
119 | 120 | 0.746063 | CAGGCTGGTGCTCAAAAACA | 59.254 | 50.000 | 6.61 | 0.00 | 39.59 | 2.83 |
120 | 121 | 1.032014 | TCAGGCTGGTGCTCAAAAAC | 58.968 | 50.000 | 15.73 | 0.00 | 39.59 | 2.43 |
121 | 122 | 1.032014 | GTCAGGCTGGTGCTCAAAAA | 58.968 | 50.000 | 15.73 | 0.00 | 39.59 | 1.94 |
122 | 123 | 0.183492 | AGTCAGGCTGGTGCTCAAAA | 59.817 | 50.000 | 15.73 | 0.00 | 39.59 | 2.44 |
123 | 124 | 0.183492 | AAGTCAGGCTGGTGCTCAAA | 59.817 | 50.000 | 15.73 | 0.00 | 39.59 | 2.69 |
124 | 125 | 0.183492 | AAAGTCAGGCTGGTGCTCAA | 59.817 | 50.000 | 15.73 | 0.00 | 39.59 | 3.02 |
125 | 126 | 0.183492 | AAAAGTCAGGCTGGTGCTCA | 59.817 | 50.000 | 15.73 | 0.00 | 39.59 | 4.26 |
126 | 127 | 0.595095 | CAAAAGTCAGGCTGGTGCTC | 59.405 | 55.000 | 15.73 | 0.94 | 39.59 | 4.26 |
127 | 128 | 1.458639 | GCAAAAGTCAGGCTGGTGCT | 61.459 | 55.000 | 15.73 | 7.93 | 39.59 | 4.40 |
128 | 129 | 1.006922 | GCAAAAGTCAGGCTGGTGC | 60.007 | 57.895 | 15.73 | 12.53 | 38.76 | 5.01 |
129 | 130 | 1.035139 | AAGCAAAAGTCAGGCTGGTG | 58.965 | 50.000 | 15.73 | 6.67 | 38.04 | 4.17 |
130 | 131 | 1.780503 | AAAGCAAAAGTCAGGCTGGT | 58.219 | 45.000 | 15.73 | 0.00 | 38.04 | 4.00 |
131 | 132 | 4.320608 | TTTAAAGCAAAAGTCAGGCTGG | 57.679 | 40.909 | 15.73 | 0.00 | 38.04 | 4.85 |
132 | 133 | 7.599998 | ACATTATTTAAAGCAAAAGTCAGGCTG | 59.400 | 33.333 | 8.58 | 8.58 | 38.04 | 4.85 |
133 | 134 | 7.670364 | ACATTATTTAAAGCAAAAGTCAGGCT | 58.330 | 30.769 | 0.00 | 0.00 | 40.14 | 4.58 |
134 | 135 | 7.889589 | ACATTATTTAAAGCAAAAGTCAGGC | 57.110 | 32.000 | 0.00 | 0.00 | 0.00 | 4.85 |
145 | 146 | 9.678941 | GGGCATTACTTCTACATTATTTAAAGC | 57.321 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
156 | 157 | 9.969001 | AAGTAATTTTAGGGCATTACTTCTACA | 57.031 | 29.630 | 11.86 | 0.00 | 46.37 | 2.74 |
162 | 163 | 8.134202 | AGCAAAAGTAATTTTAGGGCATTACT | 57.866 | 30.769 | 10.53 | 2.34 | 44.58 | 2.24 |
163 | 164 | 8.771920 | AAGCAAAAGTAATTTTAGGGCATTAC | 57.228 | 30.769 | 10.53 | 0.00 | 36.49 | 1.89 |
165 | 166 | 9.785982 | TTAAAGCAAAAGTAATTTTAGGGCATT | 57.214 | 25.926 | 10.53 | 7.89 | 0.00 | 3.56 |
166 | 167 | 9.785982 | TTTAAAGCAAAAGTAATTTTAGGGCAT | 57.214 | 25.926 | 10.53 | 0.00 | 0.00 | 4.40 |
167 | 168 | 9.785982 | ATTTAAAGCAAAAGTAATTTTAGGGCA | 57.214 | 25.926 | 10.53 | 0.00 | 0.00 | 5.36 |
227 | 228 | 5.643664 | CCATCAAATCATCATGTTTCACGT | 58.356 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
228 | 229 | 4.501559 | GCCATCAAATCATCATGTTTCACG | 59.498 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
244 | 245 | 2.267642 | CGACCTTCCGGCCATCAA | 59.732 | 61.111 | 2.24 | 0.00 | 0.00 | 2.57 |
254 | 255 | 4.144703 | GTCCGCCTCCCGACCTTC | 62.145 | 72.222 | 0.00 | 0.00 | 40.02 | 3.46 |
271 | 272 | 1.376037 | GCTCCTTCCTGTCGTTGGG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
276 | 277 | 1.153667 | GCTGAGCTCCTTCCTGTCG | 60.154 | 63.158 | 12.15 | 0.00 | 0.00 | 4.35 |
295 | 296 | 0.535102 | CTATCACCGTTGCCATCCCC | 60.535 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
300 | 301 | 2.125310 | CCGCTATCACCGTTGCCA | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 4.92 |
304 | 305 | 1.674817 | CCAAAGTCCGCTATCACCGTT | 60.675 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
331 | 332 | 3.496870 | CCTGCCATCATCCCTAAACTACC | 60.497 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
396 | 397 | 2.202324 | GTCACGGTCGTCGAGCTC | 60.202 | 66.667 | 21.01 | 2.73 | 42.43 | 4.09 |
414 | 415 | 3.047877 | CGCCCTTCGGTGTTGTCC | 61.048 | 66.667 | 0.00 | 0.00 | 34.70 | 4.02 |
434 | 435 | 1.228429 | CCAACGTTGTCCACCCCAT | 60.228 | 57.895 | 25.63 | 0.00 | 0.00 | 4.00 |
436 | 437 | 3.292159 | GCCAACGTTGTCCACCCC | 61.292 | 66.667 | 25.63 | 2.76 | 0.00 | 4.95 |
437 | 438 | 3.656045 | CGCCAACGTTGTCCACCC | 61.656 | 66.667 | 25.63 | 6.84 | 33.53 | 4.61 |
438 | 439 | 3.656045 | CCGCCAACGTTGTCCACC | 61.656 | 66.667 | 25.63 | 8.44 | 37.70 | 4.61 |
439 | 440 | 3.656045 | CCCGCCAACGTTGTCCAC | 61.656 | 66.667 | 25.63 | 11.76 | 37.70 | 4.02 |
440 | 441 | 3.818121 | CTCCCGCCAACGTTGTCCA | 62.818 | 63.158 | 25.63 | 5.20 | 37.70 | 4.02 |
441 | 442 | 3.047877 | CTCCCGCCAACGTTGTCC | 61.048 | 66.667 | 25.63 | 15.34 | 37.70 | 4.02 |
442 | 443 | 3.047877 | CCTCCCGCCAACGTTGTC | 61.048 | 66.667 | 25.63 | 13.65 | 37.70 | 3.18 |
443 | 444 | 4.636435 | CCCTCCCGCCAACGTTGT | 62.636 | 66.667 | 25.63 | 0.00 | 37.70 | 3.32 |
448 | 449 | 4.966787 | TTGTGCCCTCCCGCCAAC | 62.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
449 | 450 | 4.966787 | GTTGTGCCCTCCCGCCAA | 62.967 | 66.667 | 0.00 | 0.00 | 0.00 | 4.52 |
452 | 453 | 4.643387 | ACAGTTGTGCCCTCCCGC | 62.643 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
453 | 454 | 2.669569 | CACAGTTGTGCCCTCCCG | 60.670 | 66.667 | 0.00 | 0.00 | 39.39 | 5.14 |
467 | 468 | 1.679311 | CCTCCAAGCTGGCTACACA | 59.321 | 57.895 | 0.00 | 0.00 | 37.47 | 3.72 |
494 | 495 | 2.933666 | CGATCTACGTCGCGGCTA | 59.066 | 61.111 | 9.90 | 0.00 | 34.56 | 3.93 |
504 | 505 | 1.159098 | ACCGCTCCTCGACGATCTAC | 61.159 | 60.000 | 0.00 | 0.00 | 41.67 | 2.59 |
511 | 512 | 2.728817 | CCCATACCGCTCCTCGAC | 59.271 | 66.667 | 0.00 | 0.00 | 41.67 | 4.20 |
513 | 514 | 2.838225 | ACCCCATACCGCTCCTCG | 60.838 | 66.667 | 0.00 | 0.00 | 38.08 | 4.63 |
514 | 515 | 1.749334 | CTCACCCCATACCGCTCCTC | 61.749 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
520 | 521 | 1.338136 | AAGCCTCTCACCCCATACCG | 61.338 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
570 | 571 | 0.179250 | CTTTCACCATTGTCGCGTCG | 60.179 | 55.000 | 5.77 | 0.00 | 0.00 | 5.12 |
595 | 596 | 4.589675 | TGGAACCCAACCGCCACC | 62.590 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
605 | 606 | 1.545841 | CCCTAAAACAGCTGGAACCC | 58.454 | 55.000 | 19.93 | 0.00 | 0.00 | 4.11 |
607 | 608 | 1.541588 | CTGCCCTAAAACAGCTGGAAC | 59.458 | 52.381 | 19.93 | 0.00 | 0.00 | 3.62 |
614 | 615 | 2.113860 | TAGCAGCTGCCCTAAAACAG | 57.886 | 50.000 | 34.39 | 0.00 | 43.38 | 3.16 |
616 | 617 | 2.099756 | CCATTAGCAGCTGCCCTAAAAC | 59.900 | 50.000 | 34.39 | 5.26 | 43.38 | 2.43 |
617 | 618 | 2.291540 | ACCATTAGCAGCTGCCCTAAAA | 60.292 | 45.455 | 34.39 | 20.29 | 43.38 | 1.52 |
618 | 619 | 1.284785 | ACCATTAGCAGCTGCCCTAAA | 59.715 | 47.619 | 34.39 | 22.68 | 43.38 | 1.85 |
619 | 620 | 0.918983 | ACCATTAGCAGCTGCCCTAA | 59.081 | 50.000 | 34.39 | 25.93 | 43.38 | 2.69 |
634 | 635 | 8.579006 | CCAAGTGATATATATTTGCAACACCAT | 58.421 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
672 | 675 | 3.328505 | CCGAAAAATTTGCAGCAATCCT | 58.671 | 40.909 | 9.12 | 0.00 | 0.00 | 3.24 |
676 | 679 | 1.596727 | GTGCCGAAAAATTTGCAGCAA | 59.403 | 42.857 | 2.83 | 2.83 | 33.80 | 3.91 |
686 | 689 | 5.941058 | TGTATCTCTATTTGGTGCCGAAAAA | 59.059 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
725 | 728 | 4.036971 | TCAAAGGGTGATGTAAAACAACGG | 59.963 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
771 | 774 | 4.051237 | CAAGCAAGCCAAAGAAAAGTACC | 58.949 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
805 | 809 | 4.277174 | TGCACGTTGTGGTCAATATTCTTT | 59.723 | 37.500 | 0.00 | 0.00 | 35.92 | 2.52 |
817 | 850 | 2.118683 | CTCAATTTGTGCACGTTGTGG | 58.881 | 47.619 | 21.28 | 14.67 | 33.64 | 4.17 |
818 | 851 | 3.038017 | CTCTCAATTTGTGCACGTTGTG | 58.962 | 45.455 | 21.28 | 19.52 | 36.51 | 3.33 |
833 | 866 | 3.973206 | TTCTGGATAAACGGCTCTCAA | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
901 | 938 | 6.183360 | CGTTTAGATCTTCTGCGATCCTTTTT | 60.183 | 38.462 | 0.00 | 0.00 | 40.50 | 1.94 |
1085 | 1131 | 2.606519 | AAGAGGGCTACCACGGCA | 60.607 | 61.111 | 0.00 | 0.00 | 40.13 | 5.69 |
1482 | 1529 | 1.366679 | GGTAAAACGAGCAGTAGGGC | 58.633 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1507 | 1554 | 7.543520 | AGAACAGTACAATACTAAAGGCGTTAC | 59.456 | 37.037 | 0.00 | 0.00 | 37.23 | 2.50 |
1546 | 1593 | 3.179830 | CTCGCCAGACACACAGTAATAC | 58.820 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1559 | 1606 | 0.178767 | AATGTGCATAGCTCGCCAGA | 59.821 | 50.000 | 5.65 | 0.00 | 0.00 | 3.86 |
1571 | 1618 | 3.947196 | ACTTCAGAGTTTGACAATGTGCA | 59.053 | 39.130 | 0.00 | 0.00 | 34.94 | 4.57 |
1635 | 1683 | 5.452777 | GTTCTACTTTTGCTTTAGCTGTGG | 58.547 | 41.667 | 0.00 | 0.42 | 42.66 | 4.17 |
1661 | 1709 | 9.979578 | CAATTAGCATCTCTATTCTCTACAACT | 57.020 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
1667 | 1715 | 8.149647 | CCAAGTCAATTAGCATCTCTATTCTCT | 58.850 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
1668 | 1716 | 7.930865 | ACCAAGTCAATTAGCATCTCTATTCTC | 59.069 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
1669 | 1717 | 7.800092 | ACCAAGTCAATTAGCATCTCTATTCT | 58.200 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
1670 | 1718 | 8.341173 | CAACCAAGTCAATTAGCATCTCTATTC | 58.659 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1671 | 1719 | 7.284034 | CCAACCAAGTCAATTAGCATCTCTATT | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1672 | 1720 | 6.769822 | CCAACCAAGTCAATTAGCATCTCTAT | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1673 | 1721 | 6.115446 | CCAACCAAGTCAATTAGCATCTCTA | 58.885 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1684 | 1732 | 5.570320 | ACTAATACAGCCAACCAAGTCAAT | 58.430 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1700 | 1748 | 1.474077 | ACACCCACGTCGGACTAATAC | 59.526 | 52.381 | 6.09 | 0.00 | 36.56 | 1.89 |
1709 | 1757 | 1.011333 | AAGTTGAAACACCCACGTCG | 58.989 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1715 | 1763 | 1.136891 | AGCAAGCAAGTTGAAACACCC | 59.863 | 47.619 | 7.16 | 0.00 | 38.60 | 4.61 |
1764 | 1820 | 3.949754 | ACAGTTCAACCATGGCATCATAG | 59.050 | 43.478 | 13.04 | 0.00 | 31.33 | 2.23 |
1831 | 1890 | 7.803189 | AGACAAAATAACTAGCGTGTGAAATTG | 59.197 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1856 | 1915 | 4.858692 | CACAAAACCAGAAGAACAACACAG | 59.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2189 | 2248 | 3.266510 | TCAATGTCATTCCCTCCTTCG | 57.733 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
2351 | 2411 | 5.136105 | AGAAAGCACTCAAGAGTTCCAAAT | 58.864 | 37.500 | 0.00 | 0.00 | 40.20 | 2.32 |
2428 | 2619 | 7.933577 | CCTCAATGCATAAATAAGGAGACAGTA | 59.066 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2481 | 2672 | 4.935205 | TCACAGCTTAAAATCATACGCACT | 59.065 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
2633 | 2824 | 3.731652 | TTGTCCTGTTTTCCATTGCAG | 57.268 | 42.857 | 0.00 | 0.00 | 0.00 | 4.41 |
3202 | 3408 | 8.773645 | TGAATGCATAAATCGGAAGTTGTATAG | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
3207 | 3413 | 6.732154 | AGATGAATGCATAAATCGGAAGTTG | 58.268 | 36.000 | 0.00 | 0.00 | 34.11 | 3.16 |
3350 | 3562 | 5.147330 | ACACATTAGAATCTCGACCAACA | 57.853 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3442 | 3654 | 9.671279 | AAGAAATAAAATAGCCAAATCAAAGGG | 57.329 | 29.630 | 0.00 | 0.00 | 0.00 | 3.95 |
4139 | 4351 | 8.784043 | AGCTAACATAGATTGAAAAACGTTCTT | 58.216 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
4140 | 4352 | 8.324163 | AGCTAACATAGATTGAAAAACGTTCT | 57.676 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
4141 | 4353 | 8.950403 | AAGCTAACATAGATTGAAAAACGTTC | 57.050 | 30.769 | 0.00 | 0.00 | 32.40 | 3.95 |
4152 | 4364 | 8.784043 | AGAACGTTTTTCAAGCTAACATAGATT | 58.216 | 29.630 | 0.46 | 0.00 | 34.19 | 2.40 |
4153 | 4365 | 8.324163 | AGAACGTTTTTCAAGCTAACATAGAT | 57.676 | 30.769 | 0.46 | 0.00 | 0.00 | 1.98 |
4154 | 4366 | 7.724305 | AGAACGTTTTTCAAGCTAACATAGA | 57.276 | 32.000 | 0.46 | 0.00 | 0.00 | 1.98 |
4163 | 4375 | 9.233232 | CCCATAATATAAGAACGTTTTTCAAGC | 57.767 | 33.333 | 7.42 | 0.00 | 0.00 | 4.01 |
4166 | 4378 | 8.605746 | CGTCCCATAATATAAGAACGTTTTTCA | 58.394 | 33.333 | 7.42 | 0.00 | 0.00 | 2.69 |
4167 | 4379 | 8.066000 | CCGTCCCATAATATAAGAACGTTTTTC | 58.934 | 37.037 | 7.42 | 0.00 | 0.00 | 2.29 |
4168 | 4380 | 7.769970 | TCCGTCCCATAATATAAGAACGTTTTT | 59.230 | 33.333 | 9.22 | 9.22 | 0.00 | 1.94 |
4169 | 4381 | 7.274447 | TCCGTCCCATAATATAAGAACGTTTT | 58.726 | 34.615 | 0.46 | 0.00 | 0.00 | 2.43 |
4170 | 4382 | 6.819284 | TCCGTCCCATAATATAAGAACGTTT | 58.181 | 36.000 | 0.46 | 0.00 | 0.00 | 3.60 |
4171 | 4383 | 6.409524 | TCCGTCCCATAATATAAGAACGTT | 57.590 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
4172 | 4384 | 5.047519 | CCTCCGTCCCATAATATAAGAACGT | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 3.99 |
4173 | 4385 | 5.408356 | CCTCCGTCCCATAATATAAGAACG | 58.592 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
4174 | 4386 | 5.482878 | TCCCTCCGTCCCATAATATAAGAAC | 59.517 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4175 | 4387 | 5.657446 | TCCCTCCGTCCCATAATATAAGAA | 58.343 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
4176 | 4388 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
4177 | 4389 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
4178 | 4390 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
4179 | 4391 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
4180 | 4392 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
4181 | 4393 | 4.044952 | TCATACTCCCTCCGTCCCATAATA | 59.955 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
4182 | 4394 | 3.173965 | CATACTCCCTCCGTCCCATAAT | 58.826 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4183 | 4395 | 2.178325 | TCATACTCCCTCCGTCCCATAA | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
4184 | 4396 | 1.784593 | TCATACTCCCTCCGTCCCATA | 59.215 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
4185 | 4397 | 0.561184 | TCATACTCCCTCCGTCCCAT | 59.439 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4186 | 4398 | 0.561184 | ATCATACTCCCTCCGTCCCA | 59.439 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4187 | 4399 | 2.599408 | TATCATACTCCCTCCGTCCC | 57.401 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4188 | 4400 | 5.446860 | TCATATATCATACTCCCTCCGTCC | 58.553 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4189 | 4401 | 7.589958 | AATCATATATCATACTCCCTCCGTC | 57.410 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4190 | 4402 | 9.661954 | AATAATCATATATCATACTCCCTCCGT | 57.338 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
4342 | 4561 | 2.158769 | TGGGTGCACATGGATGATAGTC | 60.159 | 50.000 | 20.43 | 0.00 | 0.00 | 2.59 |
4610 | 4829 | 4.980573 | AGTCTACTGCCAAACCAACATTA | 58.019 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
4618 | 4837 | 8.979574 | GTCATGTATATAAGTCTACTGCCAAAC | 58.020 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
4667 | 4888 | 4.284829 | TGTCTTGATGCACAGTCCATAA | 57.715 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
4681 | 4902 | 4.099573 | GCTACACCCTAGCTAATGTCTTGA | 59.900 | 45.833 | 7.94 | 0.00 | 37.56 | 3.02 |
4716 | 4937 | 1.477700 | GCCAAAGGCTGCAATGTATCA | 59.522 | 47.619 | 0.50 | 0.00 | 46.69 | 2.15 |
4840 | 5061 | 3.741344 | CCCTGAAACTAGACAACGTGAAG | 59.259 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
4843 | 5064 | 1.798813 | GCCCTGAAACTAGACAACGTG | 59.201 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
4845 | 5066 | 2.457366 | AGCCCTGAAACTAGACAACG | 57.543 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
5008 | 5236 | 2.110578 | GGGGGAACAATGCTTGCTTAT | 58.889 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.