Multiple sequence alignment - TraesCS6D01G163400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G163400 chr6D 100.000 5061 0 0 1 5061 142842196 142847256 0.000000e+00 9347
1 TraesCS6D01G163400 chr6D 82.958 311 37 13 4753 5059 142866349 142866647 3.000000e-67 267
2 TraesCS6D01G163400 chr6D 86.957 161 20 1 4753 4913 142922270 142922429 4.030000e-41 180
3 TraesCS6D01G163400 chr6D 96.629 89 3 0 4114 4202 93317725 93317813 1.140000e-31 148
4 TraesCS6D01G163400 chr6B 92.119 2246 122 28 188 2419 248368229 248370433 0.000000e+00 3116
5 TraesCS6D01G163400 chr6B 95.763 1723 38 13 2414 4119 248370494 248372198 0.000000e+00 2745
6 TraesCS6D01G163400 chr6B 97.685 864 18 1 4200 5061 248372196 248373059 0.000000e+00 1483
7 TraesCS6D01G163400 chr6B 82.258 310 41 11 4753 5059 248388027 248388325 6.500000e-64 255
8 TraesCS6D01G163400 chr6B 89.189 148 6 2 10 155 248362976 248363115 5.210000e-40 176
9 TraesCS6D01G163400 chr6B 85.535 159 22 1 4753 4911 248505139 248505296 1.130000e-36 165
10 TraesCS6D01G163400 chr6A 94.767 1720 54 14 2414 4112 187902269 187903973 0.000000e+00 2645
11 TraesCS6D01G163400 chr6A 93.956 1638 58 23 806 2419 187900589 187902209 0.000000e+00 2438
12 TraesCS6D01G163400 chr6A 91.753 873 44 8 4205 5061 187903967 187904827 0.000000e+00 1188
13 TraesCS6D01G163400 chr6A 82.315 311 39 13 4753 5059 187910221 187910519 6.500000e-64 255
14 TraesCS6D01G163400 chr6A 89.796 196 17 3 624 817 187900377 187900571 1.090000e-61 248
15 TraesCS6D01G163400 chr4D 100.000 85 0 0 4118 4202 492602152 492602236 1.890000e-34 158
16 TraesCS6D01G163400 chr4D 94.792 96 5 0 4115 4210 34978338 34978433 3.160000e-32 150
17 TraesCS6D01G163400 chr4D 96.629 89 3 0 4114 4202 50531357 50531445 1.140000e-31 148
18 TraesCS6D01G163400 chr4D 96.629 89 3 0 4114 4202 53611786 53611874 1.140000e-31 148
19 TraesCS6D01G163400 chr1D 96.629 89 3 0 4114 4202 267157690 267157778 1.140000e-31 148
20 TraesCS6D01G163400 chr2B 95.652 92 3 1 4118 4209 383072067 383072157 4.080000e-31 147
21 TraesCS6D01G163400 chr4A 91.429 105 6 3 4107 4209 176881304 176881407 1.900000e-29 141
22 TraesCS6D01G163400 chr2A 90.654 107 6 4 4111 4214 86062504 86062399 6.830000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G163400 chr6D 142842196 142847256 5060 False 9347.00 9347 100.000 1 5061 1 chr6D.!!$F2 5060
1 TraesCS6D01G163400 chr6B 248368229 248373059 4830 False 2448.00 3116 95.189 188 5061 3 chr6B.!!$F4 4873
2 TraesCS6D01G163400 chr6A 187900377 187904827 4450 False 1629.75 2645 92.568 624 5061 4 chr6A.!!$F2 4437


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.028374 GCGTACACGTGCTTTGGTTT 59.972 50.000 17.22 0.00 42.22 3.27 F
141 142 0.183492 TTTTGAGCACCAGCCTGACT 59.817 50.000 0.00 0.00 43.56 3.41 F
1571 1618 0.174389 CTGTGTGTCTGGCGAGCTAT 59.826 55.000 0.00 0.00 0.00 2.97 F
1715 1763 1.133598 TGGCTGTATTAGTCCGACGTG 59.866 52.381 0.00 0.00 0.00 4.49 F
2583 2774 2.111669 CTGGTCACCACTGCAGCA 59.888 61.111 15.27 0.16 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1606 0.178767 AATGTGCATAGCTCGCCAGA 59.821 50.000 5.65 0.0 0.0 3.86 R
1709 1757 1.011333 AAGTTGAAACACCCACGTCG 58.989 50.000 0.00 0.0 0.0 5.12 R
2633 2824 3.731652 TTGTCCTGTTTTCCATTGCAG 57.268 42.857 0.00 0.0 0.0 4.41 R
3350 3562 5.147330 ACACATTAGAATCTCGACCAACA 57.853 39.130 0.00 0.0 0.0 3.33 R
4185 4397 0.561184 TCATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.0 0.0 4.00 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.930310 ATGATGATGCGTACACGTGC 59.070 50.000 17.22 1.22 42.22 5.34
22 23 0.108851 TGATGATGCGTACACGTGCT 60.109 50.000 17.22 5.64 42.22 4.40
23 24 0.999406 GATGATGCGTACACGTGCTT 59.001 50.000 17.22 0.00 42.22 3.91
24 25 1.393539 GATGATGCGTACACGTGCTTT 59.606 47.619 17.22 0.00 42.22 3.51
25 26 0.510790 TGATGCGTACACGTGCTTTG 59.489 50.000 17.22 4.29 42.22 2.77
26 27 0.179225 GATGCGTACACGTGCTTTGG 60.179 55.000 17.22 1.73 42.22 3.28
27 28 0.882927 ATGCGTACACGTGCTTTGGT 60.883 50.000 17.22 0.00 42.22 3.67
28 29 1.090625 TGCGTACACGTGCTTTGGTT 61.091 50.000 17.22 0.00 42.22 3.67
29 30 0.028374 GCGTACACGTGCTTTGGTTT 59.972 50.000 17.22 0.00 42.22 3.27
30 31 1.737249 CGTACACGTGCTTTGGTTTG 58.263 50.000 17.22 0.00 34.11 2.93
31 32 1.328069 CGTACACGTGCTTTGGTTTGA 59.672 47.619 17.22 0.00 34.11 2.69
32 33 2.711885 GTACACGTGCTTTGGTTTGAC 58.288 47.619 17.22 0.00 0.00 3.18
33 34 1.169577 ACACGTGCTTTGGTTTGACA 58.830 45.000 17.22 0.00 0.00 3.58
34 35 1.542030 ACACGTGCTTTGGTTTGACAA 59.458 42.857 17.22 0.00 0.00 3.18
35 36 1.917303 CACGTGCTTTGGTTTGACAAC 59.083 47.619 0.82 0.00 0.00 3.32
36 37 1.542030 ACGTGCTTTGGTTTGACAACA 59.458 42.857 0.00 0.00 34.15 3.33
37 38 1.917303 CGTGCTTTGGTTTGACAACAC 59.083 47.619 0.00 0.00 34.15 3.32
38 39 2.415357 CGTGCTTTGGTTTGACAACACT 60.415 45.455 0.00 0.00 34.15 3.55
39 40 3.584834 GTGCTTTGGTTTGACAACACTT 58.415 40.909 0.00 0.00 34.15 3.16
40 41 3.612423 GTGCTTTGGTTTGACAACACTTC 59.388 43.478 0.00 0.00 34.15 3.01
41 42 3.256879 TGCTTTGGTTTGACAACACTTCA 59.743 39.130 0.00 0.00 34.15 3.02
42 43 4.081752 TGCTTTGGTTTGACAACACTTCAT 60.082 37.500 0.00 0.00 34.15 2.57
43 44 4.869861 GCTTTGGTTTGACAACACTTCATT 59.130 37.500 0.00 0.00 34.15 2.57
44 45 5.220453 GCTTTGGTTTGACAACACTTCATTG 60.220 40.000 0.00 0.00 34.15 2.82
45 46 3.779759 TGGTTTGACAACACTTCATTGC 58.220 40.909 0.00 0.00 34.15 3.56
46 47 3.194329 TGGTTTGACAACACTTCATTGCA 59.806 39.130 0.00 0.00 34.15 4.08
47 48 4.180057 GGTTTGACAACACTTCATTGCAA 58.820 39.130 0.00 0.00 34.15 4.08
48 49 4.268405 GGTTTGACAACACTTCATTGCAAG 59.732 41.667 4.94 0.00 34.15 4.01
49 50 3.082698 TGACAACACTTCATTGCAAGC 57.917 42.857 4.94 0.00 0.00 4.01
50 51 2.426381 TGACAACACTTCATTGCAAGCA 59.574 40.909 4.94 0.00 0.00 3.91
51 52 3.047796 GACAACACTTCATTGCAAGCAG 58.952 45.455 4.94 2.99 0.00 4.24
52 53 2.689471 ACAACACTTCATTGCAAGCAGA 59.311 40.909 4.94 0.00 0.00 4.26
53 54 3.047796 CAACACTTCATTGCAAGCAGAC 58.952 45.455 4.94 0.00 0.00 3.51
54 55 2.300433 ACACTTCATTGCAAGCAGACA 58.700 42.857 4.94 0.00 0.00 3.41
55 56 2.889045 ACACTTCATTGCAAGCAGACAT 59.111 40.909 4.94 0.00 0.00 3.06
56 57 3.319972 ACACTTCATTGCAAGCAGACATT 59.680 39.130 4.94 0.00 0.00 2.71
57 58 4.520111 ACACTTCATTGCAAGCAGACATTA 59.480 37.500 4.94 0.00 0.00 1.90
58 59 4.855388 CACTTCATTGCAAGCAGACATTAC 59.145 41.667 4.94 0.00 0.00 1.89
59 60 4.520111 ACTTCATTGCAAGCAGACATTACA 59.480 37.500 4.94 0.00 0.00 2.41
60 61 5.184479 ACTTCATTGCAAGCAGACATTACAT 59.816 36.000 4.94 0.00 0.00 2.29
61 62 5.239359 TCATTGCAAGCAGACATTACATC 57.761 39.130 4.94 0.00 0.00 3.06
62 63 4.701171 TCATTGCAAGCAGACATTACATCA 59.299 37.500 4.94 0.00 0.00 3.07
63 64 5.358725 TCATTGCAAGCAGACATTACATCAT 59.641 36.000 4.94 0.00 0.00 2.45
64 65 4.888038 TGCAAGCAGACATTACATCATC 57.112 40.909 0.00 0.00 0.00 2.92
65 66 4.520179 TGCAAGCAGACATTACATCATCT 58.480 39.130 0.00 0.00 0.00 2.90
66 67 4.945543 TGCAAGCAGACATTACATCATCTT 59.054 37.500 0.00 0.00 0.00 2.40
67 68 5.065602 TGCAAGCAGACATTACATCATCTTC 59.934 40.000 0.00 0.00 0.00 2.87
68 69 5.296283 GCAAGCAGACATTACATCATCTTCT 59.704 40.000 0.00 0.00 0.00 2.85
69 70 6.183360 GCAAGCAGACATTACATCATCTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
70 71 7.408123 CAAGCAGACATTACATCATCTTCTTC 58.592 38.462 0.00 0.00 0.00 2.87
71 72 6.647229 AGCAGACATTACATCATCTTCTTCA 58.353 36.000 0.00 0.00 0.00 3.02
72 73 7.108194 AGCAGACATTACATCATCTTCTTCAA 58.892 34.615 0.00 0.00 0.00 2.69
73 74 7.774157 AGCAGACATTACATCATCTTCTTCAAT 59.226 33.333 0.00 0.00 0.00 2.57
74 75 7.856398 GCAGACATTACATCATCTTCTTCAATG 59.144 37.037 0.00 0.00 0.00 2.82
75 76 8.890718 CAGACATTACATCATCTTCTTCAATGT 58.109 33.333 0.00 0.00 37.89 2.71
83 84 8.017373 ACATCATCTTCTTCAATGTAAAACACG 58.983 33.333 0.00 0.00 0.00 4.49
84 85 7.722795 TCATCTTCTTCAATGTAAAACACGA 57.277 32.000 0.00 0.00 0.00 4.35
85 86 8.322906 TCATCTTCTTCAATGTAAAACACGAT 57.677 30.769 0.00 0.00 0.00 3.73
86 87 8.229811 TCATCTTCTTCAATGTAAAACACGATG 58.770 33.333 0.00 0.00 0.00 3.84
87 88 6.370593 TCTTCTTCAATGTAAAACACGATGC 58.629 36.000 0.00 0.00 0.00 3.91
88 89 5.041951 TCTTCAATGTAAAACACGATGCC 57.958 39.130 0.00 0.00 0.00 4.40
89 90 3.840890 TCAATGTAAAACACGATGCCC 57.159 42.857 0.00 0.00 0.00 5.36
90 91 3.417101 TCAATGTAAAACACGATGCCCT 58.583 40.909 0.00 0.00 0.00 5.19
91 92 4.580868 TCAATGTAAAACACGATGCCCTA 58.419 39.130 0.00 0.00 0.00 3.53
92 93 5.004448 TCAATGTAAAACACGATGCCCTAA 58.996 37.500 0.00 0.00 0.00 2.69
93 94 5.473846 TCAATGTAAAACACGATGCCCTAAA 59.526 36.000 0.00 0.00 0.00 1.85
94 95 5.968528 ATGTAAAACACGATGCCCTAAAA 57.031 34.783 0.00 0.00 0.00 1.52
95 96 5.769484 TGTAAAACACGATGCCCTAAAAA 57.231 34.783 0.00 0.00 0.00 1.94
96 97 5.521544 TGTAAAACACGATGCCCTAAAAAC 58.478 37.500 0.00 0.00 0.00 2.43
97 98 3.653539 AAACACGATGCCCTAAAAACC 57.346 42.857 0.00 0.00 0.00 3.27
98 99 2.279935 ACACGATGCCCTAAAAACCA 57.720 45.000 0.00 0.00 0.00 3.67
99 100 2.802719 ACACGATGCCCTAAAAACCAT 58.197 42.857 0.00 0.00 0.00 3.55
100 101 3.161866 ACACGATGCCCTAAAAACCATT 58.838 40.909 0.00 0.00 0.00 3.16
101 102 4.337145 ACACGATGCCCTAAAAACCATTA 58.663 39.130 0.00 0.00 0.00 1.90
102 103 4.953579 ACACGATGCCCTAAAAACCATTAT 59.046 37.500 0.00 0.00 0.00 1.28
103 104 6.123651 ACACGATGCCCTAAAAACCATTATA 58.876 36.000 0.00 0.00 0.00 0.98
104 105 6.262273 ACACGATGCCCTAAAAACCATTATAG 59.738 38.462 0.00 0.00 0.00 1.31
105 106 6.485313 CACGATGCCCTAAAAACCATTATAGA 59.515 38.462 0.00 0.00 0.00 1.98
106 107 6.710744 ACGATGCCCTAAAAACCATTATAGAG 59.289 38.462 0.00 0.00 0.00 2.43
107 108 6.149474 CGATGCCCTAAAAACCATTATAGAGG 59.851 42.308 0.00 0.00 0.00 3.69
108 109 6.584471 TGCCCTAAAAACCATTATAGAGGA 57.416 37.500 0.02 0.00 0.00 3.71
109 110 6.601332 TGCCCTAAAAACCATTATAGAGGAG 58.399 40.000 0.02 0.00 0.00 3.69
110 111 6.004574 GCCCTAAAAACCATTATAGAGGAGG 58.995 44.000 0.02 0.00 0.00 4.30
111 112 6.183361 GCCCTAAAAACCATTATAGAGGAGGA 60.183 42.308 0.02 0.00 0.00 3.71
112 113 7.454225 CCCTAAAAACCATTATAGAGGAGGAG 58.546 42.308 0.02 0.00 0.00 3.69
113 114 7.292591 CCCTAAAAACCATTATAGAGGAGGAGA 59.707 40.741 0.02 0.00 0.00 3.71
114 115 8.371699 CCTAAAAACCATTATAGAGGAGGAGAG 58.628 40.741 0.02 0.00 0.00 3.20
115 116 7.996758 AAAAACCATTATAGAGGAGGAGAGA 57.003 36.000 0.02 0.00 0.00 3.10
116 117 7.610580 AAAACCATTATAGAGGAGGAGAGAG 57.389 40.000 0.02 0.00 0.00 3.20
117 118 6.538209 AACCATTATAGAGGAGGAGAGAGA 57.462 41.667 0.02 0.00 0.00 3.10
118 119 6.538209 ACCATTATAGAGGAGGAGAGAGAA 57.462 41.667 0.02 0.00 0.00 2.87
119 120 7.114849 ACCATTATAGAGGAGGAGAGAGAAT 57.885 40.000 0.02 0.00 0.00 2.40
120 121 6.953520 ACCATTATAGAGGAGGAGAGAGAATG 59.046 42.308 0.02 0.00 0.00 2.67
121 122 6.953520 CCATTATAGAGGAGGAGAGAGAATGT 59.046 42.308 0.00 0.00 0.00 2.71
122 123 7.454380 CCATTATAGAGGAGGAGAGAGAATGTT 59.546 40.741 0.00 0.00 0.00 2.71
123 124 8.869109 CATTATAGAGGAGGAGAGAGAATGTTT 58.131 37.037 0.00 0.00 0.00 2.83
124 125 8.846423 TTATAGAGGAGGAGAGAGAATGTTTT 57.154 34.615 0.00 0.00 0.00 2.43
125 126 7.747809 ATAGAGGAGGAGAGAGAATGTTTTT 57.252 36.000 0.00 0.00 0.00 1.94
126 127 5.803552 AGAGGAGGAGAGAGAATGTTTTTG 58.196 41.667 0.00 0.00 0.00 2.44
127 128 5.545723 AGAGGAGGAGAGAGAATGTTTTTGA 59.454 40.000 0.00 0.00 0.00 2.69
128 129 5.803552 AGGAGGAGAGAGAATGTTTTTGAG 58.196 41.667 0.00 0.00 0.00 3.02
129 130 4.394610 GGAGGAGAGAGAATGTTTTTGAGC 59.605 45.833 0.00 0.00 0.00 4.26
130 131 4.978099 AGGAGAGAGAATGTTTTTGAGCA 58.022 39.130 0.00 0.00 0.00 4.26
131 132 4.759183 AGGAGAGAGAATGTTTTTGAGCAC 59.241 41.667 0.00 0.00 0.00 4.40
132 133 4.083057 GGAGAGAGAATGTTTTTGAGCACC 60.083 45.833 0.00 0.00 0.00 5.01
133 134 4.464008 AGAGAGAATGTTTTTGAGCACCA 58.536 39.130 0.00 0.00 0.00 4.17
134 135 4.518211 AGAGAGAATGTTTTTGAGCACCAG 59.482 41.667 0.00 0.00 0.00 4.00
135 136 3.005155 AGAGAATGTTTTTGAGCACCAGC 59.995 43.478 0.00 0.00 42.56 4.85
136 137 2.036346 AGAATGTTTTTGAGCACCAGCC 59.964 45.455 0.00 0.00 43.56 4.85
137 138 1.708341 ATGTTTTTGAGCACCAGCCT 58.292 45.000 0.00 0.00 43.56 4.58
138 139 0.746063 TGTTTTTGAGCACCAGCCTG 59.254 50.000 0.00 0.00 43.56 4.85
139 140 1.032014 GTTTTTGAGCACCAGCCTGA 58.968 50.000 0.00 0.00 43.56 3.86
140 141 1.032014 TTTTTGAGCACCAGCCTGAC 58.968 50.000 0.00 0.00 43.56 3.51
141 142 0.183492 TTTTGAGCACCAGCCTGACT 59.817 50.000 0.00 0.00 43.56 3.41
142 143 0.183492 TTTGAGCACCAGCCTGACTT 59.817 50.000 0.00 0.00 43.56 3.01
143 144 0.183492 TTGAGCACCAGCCTGACTTT 59.817 50.000 0.00 0.00 43.56 2.66
144 145 0.183492 TGAGCACCAGCCTGACTTTT 59.817 50.000 0.00 0.00 43.56 2.27
145 146 0.595095 GAGCACCAGCCTGACTTTTG 59.405 55.000 0.00 0.00 43.56 2.44
146 147 1.006922 GCACCAGCCTGACTTTTGC 60.007 57.895 0.00 0.00 33.58 3.68
147 148 1.458639 GCACCAGCCTGACTTTTGCT 61.459 55.000 0.00 0.00 32.78 3.91
148 149 1.035139 CACCAGCCTGACTTTTGCTT 58.965 50.000 0.00 0.00 31.77 3.91
149 150 1.410153 CACCAGCCTGACTTTTGCTTT 59.590 47.619 0.00 0.00 31.77 3.51
150 151 2.622942 CACCAGCCTGACTTTTGCTTTA 59.377 45.455 0.00 0.00 31.77 1.85
151 152 3.068024 CACCAGCCTGACTTTTGCTTTAA 59.932 43.478 0.00 0.00 31.77 1.52
152 153 3.704061 ACCAGCCTGACTTTTGCTTTAAA 59.296 39.130 0.00 0.00 31.77 1.52
153 154 4.344968 ACCAGCCTGACTTTTGCTTTAAAT 59.655 37.500 0.00 0.00 31.77 1.40
154 155 5.538433 ACCAGCCTGACTTTTGCTTTAAATA 59.462 36.000 0.00 0.00 31.77 1.40
155 156 6.041523 ACCAGCCTGACTTTTGCTTTAAATAA 59.958 34.615 0.00 0.00 31.77 1.40
156 157 7.099120 CCAGCCTGACTTTTGCTTTAAATAAT 58.901 34.615 0.00 0.00 31.77 1.28
157 158 7.063780 CCAGCCTGACTTTTGCTTTAAATAATG 59.936 37.037 0.00 0.00 31.77 1.90
158 159 7.599998 CAGCCTGACTTTTGCTTTAAATAATGT 59.400 33.333 0.00 0.00 31.77 2.71
159 160 8.802267 AGCCTGACTTTTGCTTTAAATAATGTA 58.198 29.630 0.00 0.00 29.17 2.29
160 161 9.076596 GCCTGACTTTTGCTTTAAATAATGTAG 57.923 33.333 0.00 0.00 0.00 2.74
171 172 9.678941 GCTTTAAATAATGTAGAAGTAATGCCC 57.321 33.333 0.00 0.00 0.00 5.36
227 228 6.723977 AGTAATGCCCTAAAATTTGAGAACCA 59.276 34.615 3.89 0.00 0.00 3.67
228 229 4.864704 TGCCCTAAAATTTGAGAACCAC 57.135 40.909 3.89 0.00 0.00 4.16
244 245 4.761739 AGAACCACGTGAAACATGATGATT 59.238 37.500 19.30 0.00 35.74 2.57
246 247 4.797471 ACCACGTGAAACATGATGATTTG 58.203 39.130 19.30 0.00 35.74 2.32
247 248 4.518590 ACCACGTGAAACATGATGATTTGA 59.481 37.500 19.30 0.00 35.74 2.69
248 249 5.183713 ACCACGTGAAACATGATGATTTGAT 59.816 36.000 19.30 0.00 35.74 2.57
249 250 5.513849 CCACGTGAAACATGATGATTTGATG 59.486 40.000 19.30 0.00 35.74 3.07
250 251 5.513849 CACGTGAAACATGATGATTTGATGG 59.486 40.000 10.90 0.00 35.74 3.51
251 252 4.501559 CGTGAAACATGATGATTTGATGGC 59.498 41.667 0.00 0.00 35.74 4.40
252 253 4.807304 GTGAAACATGATGATTTGATGGCC 59.193 41.667 0.00 0.00 36.32 5.36
253 254 3.720949 AACATGATGATTTGATGGCCG 57.279 42.857 0.00 0.00 0.00 6.13
254 255 1.958579 ACATGATGATTTGATGGCCGG 59.041 47.619 0.00 0.00 0.00 6.13
255 256 2.232399 CATGATGATTTGATGGCCGGA 58.768 47.619 5.05 0.00 0.00 5.14
256 257 2.433662 TGATGATTTGATGGCCGGAA 57.566 45.000 5.05 0.00 0.00 4.30
257 258 2.300433 TGATGATTTGATGGCCGGAAG 58.700 47.619 5.05 0.00 0.00 3.46
271 272 4.144703 GAAGGTCGGGAGGCGGAC 62.145 72.222 0.00 0.00 33.19 4.79
293 294 0.605589 AACGACAGGAAGGAGCTCAG 59.394 55.000 17.19 0.16 0.00 3.35
295 296 1.153667 GACAGGAAGGAGCTCAGCG 60.154 63.158 17.19 0.00 0.00 5.18
300 301 2.366167 AAGGAGCTCAGCGGGGAT 60.366 61.111 17.19 0.00 0.00 3.85
358 359 0.992431 AGGGATGATGGCAGGAGCTT 60.992 55.000 0.00 0.00 41.70 3.74
366 367 4.785453 GCAGGAGCTTGGGGACGG 62.785 72.222 0.00 0.00 37.91 4.79
410 411 4.086178 CACGAGCTCGACGACCGT 62.086 66.667 40.58 16.01 43.02 4.83
414 415 3.978867 GAGCTCGACGACCGTGACG 62.979 68.421 0.00 0.00 39.75 4.35
441 442 4.506255 GAAGGGCGGGATGGGGTG 62.506 72.222 0.00 0.00 0.00 4.61
446 447 4.041762 GCGGGATGGGGTGGACAA 62.042 66.667 0.00 0.00 0.00 3.18
447 448 2.045340 CGGGATGGGGTGGACAAC 60.045 66.667 0.00 0.00 0.00 3.32
448 449 2.045340 GGGATGGGGTGGACAACG 60.045 66.667 0.00 0.00 0.00 4.10
449 450 2.754375 GGATGGGGTGGACAACGT 59.246 61.111 0.00 0.00 0.00 3.99
450 451 1.074248 GGATGGGGTGGACAACGTT 59.926 57.895 0.00 0.00 0.00 3.99
451 452 1.241315 GGATGGGGTGGACAACGTTG 61.241 60.000 26.20 26.20 0.00 4.10
452 453 1.228429 ATGGGGTGGACAACGTTGG 60.228 57.895 30.34 13.78 0.00 3.77
453 454 3.292159 GGGGTGGACAACGTTGGC 61.292 66.667 30.34 28.49 34.70 4.52
458 459 3.047877 GGACAACGTTGGCGGGAG 61.048 66.667 30.34 5.61 43.45 4.30
481 482 1.265095 CACAACTGTGTAGCCAGCTTG 59.735 52.381 0.00 0.00 40.96 4.01
495 496 2.039951 CTTGGAGGGGTCGGGGTA 59.960 66.667 0.00 0.00 0.00 3.69
511 512 1.438384 GTAGCCGCGACGTAGATCG 60.438 63.158 8.23 0.00 45.09 3.69
548 549 1.028868 GTGAGAGGCTTCATGGTGGC 61.029 60.000 0.00 0.00 0.00 5.01
550 551 2.440980 GAGGCTTCATGGTGGCCC 60.441 66.667 16.70 8.26 46.31 5.80
605 606 1.720694 AAAGTTCACGGTGGCGGTTG 61.721 55.000 8.50 0.00 0.00 3.77
607 608 4.939368 TTCACGGTGGCGGTTGGG 62.939 66.667 8.50 0.00 0.00 4.12
610 611 4.941309 ACGGTGGCGGTTGGGTTC 62.941 66.667 0.00 0.00 0.00 3.62
612 613 4.589675 GGTGGCGGTTGGGTTCCA 62.590 66.667 0.00 0.00 0.00 3.53
613 614 2.983592 GTGGCGGTTGGGTTCCAG 60.984 66.667 0.00 0.00 33.81 3.86
614 615 4.966787 TGGCGGTTGGGTTCCAGC 62.967 66.667 0.00 0.00 33.81 4.85
616 617 3.365265 GCGGTTGGGTTCCAGCTG 61.365 66.667 6.78 6.78 42.76 4.24
617 618 2.113139 CGGTTGGGTTCCAGCTGT 59.887 61.111 13.81 0.00 36.55 4.40
618 619 1.528309 CGGTTGGGTTCCAGCTGTT 60.528 57.895 13.81 0.00 36.55 3.16
619 620 1.106944 CGGTTGGGTTCCAGCTGTTT 61.107 55.000 13.81 0.00 36.55 2.83
634 635 2.436417 CTGTTTTAGGGCAGCTGCTAA 58.564 47.619 35.82 24.59 41.70 3.09
686 689 9.154847 GAGTTAAAATTTAGGATTGCTGCAAAT 57.845 29.630 20.06 10.83 0.00 2.32
725 728 4.702131 AGAGATACACCATTTGTTGAAGGC 59.298 41.667 0.00 0.00 39.91 4.35
771 774 1.137459 TGCTCTTACACGCGCATACG 61.137 55.000 5.73 0.00 44.07 3.06
805 809 1.308047 CTTGCTTGCTGTGGTGTACA 58.692 50.000 0.00 0.00 37.78 2.90
817 850 6.072728 TGCTGTGGTGTACAAAGAATATTGAC 60.073 38.462 0.00 0.00 36.45 3.18
818 851 6.622896 GCTGTGGTGTACAAAGAATATTGACC 60.623 42.308 0.00 0.00 36.45 4.02
833 866 1.098869 TGACCACAACGTGCACAAAT 58.901 45.000 18.64 0.00 31.34 2.32
969 1015 2.506438 CGAGTCGCCGTTCCCTTC 60.506 66.667 0.00 0.00 0.00 3.46
1507 1554 1.196808 ACTGCTCGTTTTACCGCATTG 59.803 47.619 0.00 0.00 0.00 2.82
1517 1564 1.810959 TACCGCATTGTAACGCCTTT 58.189 45.000 0.00 0.00 0.00 3.11
1546 1593 4.400251 TGTACTGTTCTTGGTATACTCGGG 59.600 45.833 2.25 0.00 0.00 5.14
1559 1606 5.300286 GGTATACTCGGGTATTACTGTGTGT 59.700 44.000 14.31 0.00 39.19 3.72
1571 1618 0.174389 CTGTGTGTCTGGCGAGCTAT 59.826 55.000 0.00 0.00 0.00 2.97
1635 1683 8.866956 GGTATGTTAGTTAATGTGTACACAGAC 58.133 37.037 30.65 25.94 45.48 3.51
1661 1709 5.526111 ACAGCTAAAGCAAAAGTAGAACGAA 59.474 36.000 4.54 0.00 45.16 3.85
1684 1732 8.346300 CGAAGTTGTAGAGAATAGAGATGCTAA 58.654 37.037 0.00 0.00 31.66 3.09
1700 1748 2.557924 TGCTAATTGACTTGGTTGGCTG 59.442 45.455 0.00 0.00 31.60 4.85
1709 1757 3.939592 GACTTGGTTGGCTGTATTAGTCC 59.060 47.826 0.00 0.00 0.00 3.85
1715 1763 1.133598 TGGCTGTATTAGTCCGACGTG 59.866 52.381 0.00 0.00 0.00 4.49
1742 1798 4.389890 TTCAACTTGCTTGCTCACAAAT 57.610 36.364 0.00 0.00 34.74 2.32
1831 1890 3.929610 GCTGTATGACCAGAAGTGACTTC 59.070 47.826 17.22 17.22 40.45 3.01
1856 1915 7.801315 TCAATTTCACACGCTAGTTATTTTGTC 59.199 33.333 0.00 0.00 0.00 3.18
2373 2434 4.900635 TTTGGAACTCTTGAGTGCTTTC 57.099 40.909 8.49 1.07 0.00 2.62
2428 2619 7.071321 CCTTCCAGTATGACTCTTATTTACCCT 59.929 40.741 0.00 0.00 39.69 4.34
2486 2677 6.602179 TCTTTGAATCTGATTTGTTAGTGCG 58.398 36.000 4.11 0.00 0.00 5.34
2487 2678 5.940192 TTGAATCTGATTTGTTAGTGCGT 57.060 34.783 4.11 0.00 0.00 5.24
2548 2739 2.559698 TGGAATTCGGAAGTTGCTCA 57.440 45.000 0.00 0.00 0.00 4.26
2558 2749 7.857734 TTCGGAAGTTGCTCATAATTGATAA 57.142 32.000 0.00 0.00 0.00 1.75
2583 2774 2.111669 CTGGTCACCACTGCAGCA 59.888 61.111 15.27 0.16 0.00 4.41
3181 3373 8.246180 CACAAATCTTTAGTTCAGGTATGCATT 58.754 33.333 3.54 0.00 0.00 3.56
3202 3408 7.095229 TGCATTGTGAGTAGTAGATTTTGTCAC 60.095 37.037 0.00 0.00 34.68 3.67
3330 3541 9.274206 GGAAAATAATGTAGAAGATCAGGGTAC 57.726 37.037 0.00 0.00 0.00 3.34
3442 3654 6.031751 AGAATGAAGAACTGAGTAGTGGAC 57.968 41.667 0.00 0.00 37.19 4.02
3729 3941 4.679373 AGGTCTACCTGCTTGTGATATG 57.321 45.455 0.00 0.00 46.55 1.78
4124 4336 9.578576 TTACTCGTATAATGTAATGTACTCCCT 57.421 33.333 0.00 0.00 0.00 4.20
4125 4337 8.108551 ACTCGTATAATGTAATGTACTCCCTC 57.891 38.462 0.00 0.00 0.00 4.30
4126 4338 7.943447 ACTCGTATAATGTAATGTACTCCCTCT 59.057 37.037 0.00 0.00 0.00 3.69
4127 4339 8.107399 TCGTATAATGTAATGTACTCCCTCTG 57.893 38.462 0.00 0.00 0.00 3.35
4128 4340 7.722728 TCGTATAATGTAATGTACTCCCTCTGT 59.277 37.037 0.00 0.00 0.00 3.41
4129 4341 8.021973 CGTATAATGTAATGTACTCCCTCTGTC 58.978 40.741 0.00 0.00 0.00 3.51
4130 4342 5.615925 AATGTAATGTACTCCCTCTGTCC 57.384 43.478 0.00 0.00 0.00 4.02
4131 4343 3.371965 TGTAATGTACTCCCTCTGTCCC 58.628 50.000 0.00 0.00 0.00 4.46
4132 4344 2.642171 AATGTACTCCCTCTGTCCCA 57.358 50.000 0.00 0.00 0.00 4.37
4133 4345 2.877154 ATGTACTCCCTCTGTCCCAT 57.123 50.000 0.00 0.00 0.00 4.00
4134 4346 3.993658 ATGTACTCCCTCTGTCCCATA 57.006 47.619 0.00 0.00 0.00 2.74
4135 4347 3.769189 TGTACTCCCTCTGTCCCATAA 57.231 47.619 0.00 0.00 0.00 1.90
4136 4348 4.280789 TGTACTCCCTCTGTCCCATAAT 57.719 45.455 0.00 0.00 0.00 1.28
4137 4349 5.412617 TGTACTCCCTCTGTCCCATAATA 57.587 43.478 0.00 0.00 0.00 0.98
4138 4350 5.977533 TGTACTCCCTCTGTCCCATAATAT 58.022 41.667 0.00 0.00 0.00 1.28
4139 4351 7.111136 TGTACTCCCTCTGTCCCATAATATA 57.889 40.000 0.00 0.00 0.00 0.86
4140 4352 7.541074 TGTACTCCCTCTGTCCCATAATATAA 58.459 38.462 0.00 0.00 0.00 0.98
4141 4353 7.674348 TGTACTCCCTCTGTCCCATAATATAAG 59.326 40.741 0.00 0.00 0.00 1.73
4142 4354 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
4143 4355 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
4144 4356 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
4145 4357 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
4146 4358 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
4147 4359 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
4148 4360 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
4149 4361 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
4150 4362 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
4151 4363 9.931210 CTGTCCCATAATATAAGAACGTTTTTC 57.069 33.333 7.42 0.00 0.00 2.29
4152 4364 9.451002 TGTCCCATAATATAAGAACGTTTTTCA 57.549 29.630 7.42 0.00 0.00 2.69
4164 4376 8.950403 AAGAACGTTTTTCAATCTATGTTAGC 57.050 30.769 0.46 0.00 0.00 3.09
4165 4377 8.324163 AGAACGTTTTTCAATCTATGTTAGCT 57.676 30.769 0.46 0.00 0.00 3.32
4166 4378 8.784043 AGAACGTTTTTCAATCTATGTTAGCTT 58.216 29.630 0.46 0.00 0.00 3.74
4167 4379 8.728088 AACGTTTTTCAATCTATGTTAGCTTG 57.272 30.769 0.00 0.00 34.21 4.01
4168 4380 8.094798 ACGTTTTTCAATCTATGTTAGCTTGA 57.905 30.769 0.00 0.00 38.66 3.02
4169 4381 8.564574 ACGTTTTTCAATCTATGTTAGCTTGAA 58.435 29.630 8.65 8.65 44.46 2.69
4174 4386 8.948853 TTCAATCTATGTTAGCTTGAAAAACG 57.051 30.769 9.79 0.00 43.70 3.60
4175 4387 8.094798 TCAATCTATGTTAGCTTGAAAAACGT 57.905 30.769 0.00 0.00 37.81 3.99
4176 4388 8.564574 TCAATCTATGTTAGCTTGAAAAACGTT 58.435 29.630 0.00 0.00 37.81 3.99
4177 4389 8.840867 CAATCTATGTTAGCTTGAAAAACGTTC 58.159 33.333 0.00 0.00 34.69 3.95
4178 4390 7.724305 TCTATGTTAGCTTGAAAAACGTTCT 57.276 32.000 0.00 0.00 0.00 3.01
4179 4391 8.149973 TCTATGTTAGCTTGAAAAACGTTCTT 57.850 30.769 0.00 0.00 0.00 2.52
4180 4392 9.263538 TCTATGTTAGCTTGAAAAACGTTCTTA 57.736 29.630 0.00 0.00 0.00 2.10
4189 4401 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
4192 4404 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
4193 4405 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4194 4406 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4195 4407 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4196 4408 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4197 4409 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4198 4410 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4199 4411 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4200 4412 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4201 4413 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4667 4888 6.930731 ACATCAGGCATTTTATTTTTACGGT 58.069 32.000 0.00 0.00 0.00 4.83
4716 4937 0.107017 GGTGTAGCATCTGTGGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
4840 5061 3.126831 GTGCAGCATGTATAGTCCAGTC 58.873 50.000 0.00 0.00 39.31 3.51
4843 5064 4.054671 GCAGCATGTATAGTCCAGTCTTC 58.945 47.826 0.00 0.00 39.31 2.87
4845 5066 5.046529 CAGCATGTATAGTCCAGTCTTCAC 58.953 45.833 0.00 0.00 0.00 3.18
4961 5182 8.911918 TCTAAGAAGGCAAGTTATTTGTGTTA 57.088 30.769 0.00 0.00 39.08 2.41
5008 5236 6.037172 GTCTTCGGAAGAGCATTAAAATAGCA 59.963 38.462 20.23 0.00 43.69 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.538037 GCACGTGTACGCATCATCATAA 59.462 45.455 18.38 0.00 44.43 1.90
1 2 2.124122 GCACGTGTACGCATCATCATA 58.876 47.619 18.38 0.00 44.43 2.15
2 3 0.930310 GCACGTGTACGCATCATCAT 59.070 50.000 18.38 0.00 44.43 2.45
3 4 0.108851 AGCACGTGTACGCATCATCA 60.109 50.000 18.38 0.00 44.43 3.07
4 5 0.999406 AAGCACGTGTACGCATCATC 59.001 50.000 18.38 0.00 44.43 2.92
5 6 1.128507 CAAAGCACGTGTACGCATCAT 59.871 47.619 18.38 0.00 44.43 2.45
6 7 0.510790 CAAAGCACGTGTACGCATCA 59.489 50.000 18.38 0.00 44.43 3.07
7 8 0.179225 CCAAAGCACGTGTACGCATC 60.179 55.000 18.38 0.00 44.43 3.91
8 9 0.882927 ACCAAAGCACGTGTACGCAT 60.883 50.000 18.38 0.00 44.43 4.73
9 10 1.090625 AACCAAAGCACGTGTACGCA 61.091 50.000 18.38 0.00 44.43 5.24
10 11 0.028374 AAACCAAAGCACGTGTACGC 59.972 50.000 18.38 1.83 44.43 4.42
11 12 1.328069 TCAAACCAAAGCACGTGTACG 59.672 47.619 18.38 2.43 46.33 3.67
12 13 2.096174 TGTCAAACCAAAGCACGTGTAC 59.904 45.455 18.38 0.57 0.00 2.90
13 14 2.357075 TGTCAAACCAAAGCACGTGTA 58.643 42.857 18.38 0.00 0.00 2.90
14 15 1.169577 TGTCAAACCAAAGCACGTGT 58.830 45.000 18.38 0.68 0.00 4.49
15 16 1.917303 GTTGTCAAACCAAAGCACGTG 59.083 47.619 12.28 12.28 0.00 4.49
16 17 1.542030 TGTTGTCAAACCAAAGCACGT 59.458 42.857 0.00 0.00 35.25 4.49
17 18 1.917303 GTGTTGTCAAACCAAAGCACG 59.083 47.619 0.00 0.00 35.25 5.34
18 19 3.230743 AGTGTTGTCAAACCAAAGCAC 57.769 42.857 0.00 0.00 35.25 4.40
19 20 3.256879 TGAAGTGTTGTCAAACCAAAGCA 59.743 39.130 0.00 0.00 35.25 3.91
20 21 3.843999 TGAAGTGTTGTCAAACCAAAGC 58.156 40.909 0.00 0.00 35.25 3.51
21 22 5.220453 GCAATGAAGTGTTGTCAAACCAAAG 60.220 40.000 0.00 0.00 35.25 2.77
22 23 4.629200 GCAATGAAGTGTTGTCAAACCAAA 59.371 37.500 0.00 0.00 35.25 3.28
23 24 4.180057 GCAATGAAGTGTTGTCAAACCAA 58.820 39.130 0.00 0.00 35.25 3.67
24 25 3.194329 TGCAATGAAGTGTTGTCAAACCA 59.806 39.130 0.00 0.00 35.25 3.67
25 26 3.779759 TGCAATGAAGTGTTGTCAAACC 58.220 40.909 0.00 0.00 35.25 3.27
26 27 4.259930 GCTTGCAATGAAGTGTTGTCAAAC 60.260 41.667 0.00 0.00 36.78 2.93
27 28 3.864583 GCTTGCAATGAAGTGTTGTCAAA 59.135 39.130 0.00 0.00 0.00 2.69
28 29 3.119209 TGCTTGCAATGAAGTGTTGTCAA 60.119 39.130 0.00 0.00 0.00 3.18
29 30 2.426381 TGCTTGCAATGAAGTGTTGTCA 59.574 40.909 0.00 0.00 0.00 3.58
30 31 3.047796 CTGCTTGCAATGAAGTGTTGTC 58.952 45.455 0.00 0.00 0.00 3.18
31 32 2.689471 TCTGCTTGCAATGAAGTGTTGT 59.311 40.909 0.00 0.00 0.00 3.32
32 33 3.047796 GTCTGCTTGCAATGAAGTGTTG 58.952 45.455 0.00 0.00 0.00 3.33
33 34 2.689471 TGTCTGCTTGCAATGAAGTGTT 59.311 40.909 0.00 0.00 0.00 3.32
34 35 2.300433 TGTCTGCTTGCAATGAAGTGT 58.700 42.857 0.00 0.00 0.00 3.55
35 36 3.570926 ATGTCTGCTTGCAATGAAGTG 57.429 42.857 0.00 0.00 0.00 3.16
36 37 4.520111 TGTAATGTCTGCTTGCAATGAAGT 59.480 37.500 0.00 0.00 0.00 3.01
37 38 5.050644 TGTAATGTCTGCTTGCAATGAAG 57.949 39.130 0.00 0.00 0.00 3.02
38 39 5.183522 TGATGTAATGTCTGCTTGCAATGAA 59.816 36.000 0.00 0.00 0.00 2.57
39 40 4.701171 TGATGTAATGTCTGCTTGCAATGA 59.299 37.500 0.00 0.00 0.00 2.57
40 41 4.989044 TGATGTAATGTCTGCTTGCAATG 58.011 39.130 0.00 0.00 0.00 2.82
41 42 5.593095 AGATGATGTAATGTCTGCTTGCAAT 59.407 36.000 0.00 0.00 0.00 3.56
42 43 4.945543 AGATGATGTAATGTCTGCTTGCAA 59.054 37.500 0.00 0.00 0.00 4.08
43 44 4.520179 AGATGATGTAATGTCTGCTTGCA 58.480 39.130 0.00 0.00 0.00 4.08
44 45 5.296283 AGAAGATGATGTAATGTCTGCTTGC 59.704 40.000 0.00 0.00 0.00 4.01
45 46 6.922247 AGAAGATGATGTAATGTCTGCTTG 57.078 37.500 0.00 0.00 0.00 4.01
46 47 7.108194 TGAAGAAGATGATGTAATGTCTGCTT 58.892 34.615 0.00 0.00 36.66 3.91
47 48 6.647229 TGAAGAAGATGATGTAATGTCTGCT 58.353 36.000 0.00 0.00 27.59 4.24
48 49 6.915544 TGAAGAAGATGATGTAATGTCTGC 57.084 37.500 0.00 0.00 0.00 4.26
49 50 8.890718 ACATTGAAGAAGATGATGTAATGTCTG 58.109 33.333 0.00 0.00 33.65 3.51
57 58 8.017373 CGTGTTTTACATTGAAGAAGATGATGT 58.983 33.333 0.00 0.00 35.36 3.06
58 59 8.229811 TCGTGTTTTACATTGAAGAAGATGATG 58.770 33.333 0.00 0.00 0.00 3.07
59 60 8.322906 TCGTGTTTTACATTGAAGAAGATGAT 57.677 30.769 0.00 0.00 0.00 2.45
60 61 7.722795 TCGTGTTTTACATTGAAGAAGATGA 57.277 32.000 0.00 0.00 0.00 2.92
61 62 7.007725 GCATCGTGTTTTACATTGAAGAAGATG 59.992 37.037 0.00 0.00 37.75 2.90
62 63 7.023575 GCATCGTGTTTTACATTGAAGAAGAT 58.976 34.615 0.00 0.00 0.00 2.40
63 64 6.370593 GCATCGTGTTTTACATTGAAGAAGA 58.629 36.000 0.00 0.00 0.00 2.87
64 65 5.569059 GGCATCGTGTTTTACATTGAAGAAG 59.431 40.000 0.00 0.00 0.00 2.85
65 66 5.457140 GGCATCGTGTTTTACATTGAAGAA 58.543 37.500 0.00 0.00 0.00 2.52
66 67 4.083003 GGGCATCGTGTTTTACATTGAAGA 60.083 41.667 0.00 0.00 0.00 2.87
67 68 4.082787 AGGGCATCGTGTTTTACATTGAAG 60.083 41.667 0.00 0.00 0.00 3.02
68 69 3.823873 AGGGCATCGTGTTTTACATTGAA 59.176 39.130 0.00 0.00 0.00 2.69
69 70 3.417101 AGGGCATCGTGTTTTACATTGA 58.583 40.909 0.00 0.00 0.00 2.57
70 71 3.848272 AGGGCATCGTGTTTTACATTG 57.152 42.857 0.00 0.00 0.00 2.82
71 72 5.968528 TTTAGGGCATCGTGTTTTACATT 57.031 34.783 0.00 0.00 0.00 2.71
72 73 5.968528 TTTTAGGGCATCGTGTTTTACAT 57.031 34.783 0.00 0.00 0.00 2.29
73 74 5.507650 GGTTTTTAGGGCATCGTGTTTTACA 60.508 40.000 0.00 0.00 0.00 2.41
74 75 4.919168 GGTTTTTAGGGCATCGTGTTTTAC 59.081 41.667 0.00 0.00 0.00 2.01
75 76 4.583489 TGGTTTTTAGGGCATCGTGTTTTA 59.417 37.500 0.00 0.00 0.00 1.52
76 77 3.385111 TGGTTTTTAGGGCATCGTGTTTT 59.615 39.130 0.00 0.00 0.00 2.43
77 78 2.959707 TGGTTTTTAGGGCATCGTGTTT 59.040 40.909 0.00 0.00 0.00 2.83
78 79 2.588620 TGGTTTTTAGGGCATCGTGTT 58.411 42.857 0.00 0.00 0.00 3.32
79 80 2.279935 TGGTTTTTAGGGCATCGTGT 57.720 45.000 0.00 0.00 0.00 4.49
80 81 3.866883 AATGGTTTTTAGGGCATCGTG 57.133 42.857 0.00 0.00 0.00 4.35
81 82 6.597562 TCTATAATGGTTTTTAGGGCATCGT 58.402 36.000 0.00 0.00 0.00 3.73
82 83 6.149474 CCTCTATAATGGTTTTTAGGGCATCG 59.851 42.308 0.00 0.00 0.00 3.84
83 84 7.231467 TCCTCTATAATGGTTTTTAGGGCATC 58.769 38.462 0.00 0.00 0.00 3.91
84 85 7.161715 TCCTCTATAATGGTTTTTAGGGCAT 57.838 36.000 0.00 0.00 0.00 4.40
85 86 6.410388 CCTCCTCTATAATGGTTTTTAGGGCA 60.410 42.308 0.00 0.00 0.00 5.36
86 87 6.004574 CCTCCTCTATAATGGTTTTTAGGGC 58.995 44.000 0.00 0.00 0.00 5.19
87 88 7.292591 TCTCCTCCTCTATAATGGTTTTTAGGG 59.707 40.741 0.00 0.00 0.00 3.53
88 89 8.263854 TCTCCTCCTCTATAATGGTTTTTAGG 57.736 38.462 0.00 0.00 0.00 2.69
89 90 9.148879 TCTCTCCTCCTCTATAATGGTTTTTAG 57.851 37.037 0.00 0.00 0.00 1.85
90 91 9.148879 CTCTCTCCTCCTCTATAATGGTTTTTA 57.851 37.037 0.00 0.00 0.00 1.52
91 92 7.846823 TCTCTCTCCTCCTCTATAATGGTTTTT 59.153 37.037 0.00 0.00 0.00 1.94
92 93 7.366226 TCTCTCTCCTCCTCTATAATGGTTTT 58.634 38.462 0.00 0.00 0.00 2.43
93 94 6.928202 TCTCTCTCCTCCTCTATAATGGTTT 58.072 40.000 0.00 0.00 0.00 3.27
94 95 6.538209 TCTCTCTCCTCCTCTATAATGGTT 57.462 41.667 0.00 0.00 0.00 3.67
95 96 6.538209 TTCTCTCTCCTCCTCTATAATGGT 57.462 41.667 0.00 0.00 0.00 3.55
96 97 6.953520 ACATTCTCTCTCCTCCTCTATAATGG 59.046 42.308 0.00 0.00 0.00 3.16
97 98 8.421249 AACATTCTCTCTCCTCCTCTATAATG 57.579 38.462 0.00 0.00 0.00 1.90
98 99 9.445973 AAAACATTCTCTCTCCTCCTCTATAAT 57.554 33.333 0.00 0.00 0.00 1.28
99 100 8.846423 AAAACATTCTCTCTCCTCCTCTATAA 57.154 34.615 0.00 0.00 0.00 0.98
100 101 8.700051 CAAAAACATTCTCTCTCCTCCTCTATA 58.300 37.037 0.00 0.00 0.00 1.31
101 102 7.401493 TCAAAAACATTCTCTCTCCTCCTCTAT 59.599 37.037 0.00 0.00 0.00 1.98
102 103 6.726299 TCAAAAACATTCTCTCTCCTCCTCTA 59.274 38.462 0.00 0.00 0.00 2.43
103 104 5.545723 TCAAAAACATTCTCTCTCCTCCTCT 59.454 40.000 0.00 0.00 0.00 3.69
104 105 5.799213 TCAAAAACATTCTCTCTCCTCCTC 58.201 41.667 0.00 0.00 0.00 3.71
105 106 5.802821 GCTCAAAAACATTCTCTCTCCTCCT 60.803 44.000 0.00 0.00 0.00 3.69
106 107 4.394610 GCTCAAAAACATTCTCTCTCCTCC 59.605 45.833 0.00 0.00 0.00 4.30
107 108 4.999950 TGCTCAAAAACATTCTCTCTCCTC 59.000 41.667 0.00 0.00 0.00 3.71
108 109 4.759183 GTGCTCAAAAACATTCTCTCTCCT 59.241 41.667 0.00 0.00 0.00 3.69
109 110 4.083057 GGTGCTCAAAAACATTCTCTCTCC 60.083 45.833 0.00 0.00 0.00 3.71
110 111 4.516698 TGGTGCTCAAAAACATTCTCTCTC 59.483 41.667 0.00 0.00 0.00 3.20
111 112 4.464008 TGGTGCTCAAAAACATTCTCTCT 58.536 39.130 0.00 0.00 0.00 3.10
112 113 4.791974 CTGGTGCTCAAAAACATTCTCTC 58.208 43.478 0.00 0.00 0.00 3.20
113 114 3.005155 GCTGGTGCTCAAAAACATTCTCT 59.995 43.478 0.00 0.00 36.03 3.10
114 115 3.311966 GCTGGTGCTCAAAAACATTCTC 58.688 45.455 0.00 0.00 36.03 2.87
115 116 2.036346 GGCTGGTGCTCAAAAACATTCT 59.964 45.455 0.00 0.00 39.59 2.40
116 117 2.036346 AGGCTGGTGCTCAAAAACATTC 59.964 45.455 0.00 0.00 39.59 2.67
117 118 2.041701 AGGCTGGTGCTCAAAAACATT 58.958 42.857 0.00 0.00 39.59 2.71
118 119 1.342174 CAGGCTGGTGCTCAAAAACAT 59.658 47.619 6.61 0.00 39.59 2.71
119 120 0.746063 CAGGCTGGTGCTCAAAAACA 59.254 50.000 6.61 0.00 39.59 2.83
120 121 1.032014 TCAGGCTGGTGCTCAAAAAC 58.968 50.000 15.73 0.00 39.59 2.43
121 122 1.032014 GTCAGGCTGGTGCTCAAAAA 58.968 50.000 15.73 0.00 39.59 1.94
122 123 0.183492 AGTCAGGCTGGTGCTCAAAA 59.817 50.000 15.73 0.00 39.59 2.44
123 124 0.183492 AAGTCAGGCTGGTGCTCAAA 59.817 50.000 15.73 0.00 39.59 2.69
124 125 0.183492 AAAGTCAGGCTGGTGCTCAA 59.817 50.000 15.73 0.00 39.59 3.02
125 126 0.183492 AAAAGTCAGGCTGGTGCTCA 59.817 50.000 15.73 0.00 39.59 4.26
126 127 0.595095 CAAAAGTCAGGCTGGTGCTC 59.405 55.000 15.73 0.94 39.59 4.26
127 128 1.458639 GCAAAAGTCAGGCTGGTGCT 61.459 55.000 15.73 7.93 39.59 4.40
128 129 1.006922 GCAAAAGTCAGGCTGGTGC 60.007 57.895 15.73 12.53 38.76 5.01
129 130 1.035139 AAGCAAAAGTCAGGCTGGTG 58.965 50.000 15.73 6.67 38.04 4.17
130 131 1.780503 AAAGCAAAAGTCAGGCTGGT 58.219 45.000 15.73 0.00 38.04 4.00
131 132 4.320608 TTTAAAGCAAAAGTCAGGCTGG 57.679 40.909 15.73 0.00 38.04 4.85
132 133 7.599998 ACATTATTTAAAGCAAAAGTCAGGCTG 59.400 33.333 8.58 8.58 38.04 4.85
133 134 7.670364 ACATTATTTAAAGCAAAAGTCAGGCT 58.330 30.769 0.00 0.00 40.14 4.58
134 135 7.889589 ACATTATTTAAAGCAAAAGTCAGGC 57.110 32.000 0.00 0.00 0.00 4.85
145 146 9.678941 GGGCATTACTTCTACATTATTTAAAGC 57.321 33.333 0.00 0.00 0.00 3.51
156 157 9.969001 AAGTAATTTTAGGGCATTACTTCTACA 57.031 29.630 11.86 0.00 46.37 2.74
162 163 8.134202 AGCAAAAGTAATTTTAGGGCATTACT 57.866 30.769 10.53 2.34 44.58 2.24
163 164 8.771920 AAGCAAAAGTAATTTTAGGGCATTAC 57.228 30.769 10.53 0.00 36.49 1.89
165 166 9.785982 TTAAAGCAAAAGTAATTTTAGGGCATT 57.214 25.926 10.53 7.89 0.00 3.56
166 167 9.785982 TTTAAAGCAAAAGTAATTTTAGGGCAT 57.214 25.926 10.53 0.00 0.00 4.40
167 168 9.785982 ATTTAAAGCAAAAGTAATTTTAGGGCA 57.214 25.926 10.53 0.00 0.00 5.36
227 228 5.643664 CCATCAAATCATCATGTTTCACGT 58.356 37.500 0.00 0.00 0.00 4.49
228 229 4.501559 GCCATCAAATCATCATGTTTCACG 59.498 41.667 0.00 0.00 0.00 4.35
244 245 2.267642 CGACCTTCCGGCCATCAA 59.732 61.111 2.24 0.00 0.00 2.57
254 255 4.144703 GTCCGCCTCCCGACCTTC 62.145 72.222 0.00 0.00 40.02 3.46
271 272 1.376037 GCTCCTTCCTGTCGTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
276 277 1.153667 GCTGAGCTCCTTCCTGTCG 60.154 63.158 12.15 0.00 0.00 4.35
295 296 0.535102 CTATCACCGTTGCCATCCCC 60.535 60.000 0.00 0.00 0.00 4.81
300 301 2.125310 CCGCTATCACCGTTGCCA 60.125 61.111 0.00 0.00 0.00 4.92
304 305 1.674817 CCAAAGTCCGCTATCACCGTT 60.675 52.381 0.00 0.00 0.00 4.44
331 332 3.496870 CCTGCCATCATCCCTAAACTACC 60.497 52.174 0.00 0.00 0.00 3.18
396 397 2.202324 GTCACGGTCGTCGAGCTC 60.202 66.667 21.01 2.73 42.43 4.09
414 415 3.047877 CGCCCTTCGGTGTTGTCC 61.048 66.667 0.00 0.00 34.70 4.02
434 435 1.228429 CCAACGTTGTCCACCCCAT 60.228 57.895 25.63 0.00 0.00 4.00
436 437 3.292159 GCCAACGTTGTCCACCCC 61.292 66.667 25.63 2.76 0.00 4.95
437 438 3.656045 CGCCAACGTTGTCCACCC 61.656 66.667 25.63 6.84 33.53 4.61
438 439 3.656045 CCGCCAACGTTGTCCACC 61.656 66.667 25.63 8.44 37.70 4.61
439 440 3.656045 CCCGCCAACGTTGTCCAC 61.656 66.667 25.63 11.76 37.70 4.02
440 441 3.818121 CTCCCGCCAACGTTGTCCA 62.818 63.158 25.63 5.20 37.70 4.02
441 442 3.047877 CTCCCGCCAACGTTGTCC 61.048 66.667 25.63 15.34 37.70 4.02
442 443 3.047877 CCTCCCGCCAACGTTGTC 61.048 66.667 25.63 13.65 37.70 3.18
443 444 4.636435 CCCTCCCGCCAACGTTGT 62.636 66.667 25.63 0.00 37.70 3.32
448 449 4.966787 TTGTGCCCTCCCGCCAAC 62.967 66.667 0.00 0.00 0.00 3.77
449 450 4.966787 GTTGTGCCCTCCCGCCAA 62.967 66.667 0.00 0.00 0.00 4.52
452 453 4.643387 ACAGTTGTGCCCTCCCGC 62.643 66.667 0.00 0.00 0.00 6.13
453 454 2.669569 CACAGTTGTGCCCTCCCG 60.670 66.667 0.00 0.00 39.39 5.14
467 468 1.679311 CCTCCAAGCTGGCTACACA 59.321 57.895 0.00 0.00 37.47 3.72
494 495 2.933666 CGATCTACGTCGCGGCTA 59.066 61.111 9.90 0.00 34.56 3.93
504 505 1.159098 ACCGCTCCTCGACGATCTAC 61.159 60.000 0.00 0.00 41.67 2.59
511 512 2.728817 CCCATACCGCTCCTCGAC 59.271 66.667 0.00 0.00 41.67 4.20
513 514 2.838225 ACCCCATACCGCTCCTCG 60.838 66.667 0.00 0.00 38.08 4.63
514 515 1.749334 CTCACCCCATACCGCTCCTC 61.749 65.000 0.00 0.00 0.00 3.71
520 521 1.338136 AAGCCTCTCACCCCATACCG 61.338 60.000 0.00 0.00 0.00 4.02
570 571 0.179250 CTTTCACCATTGTCGCGTCG 60.179 55.000 5.77 0.00 0.00 5.12
595 596 4.589675 TGGAACCCAACCGCCACC 62.590 66.667 0.00 0.00 0.00 4.61
605 606 1.545841 CCCTAAAACAGCTGGAACCC 58.454 55.000 19.93 0.00 0.00 4.11
607 608 1.541588 CTGCCCTAAAACAGCTGGAAC 59.458 52.381 19.93 0.00 0.00 3.62
614 615 2.113860 TAGCAGCTGCCCTAAAACAG 57.886 50.000 34.39 0.00 43.38 3.16
616 617 2.099756 CCATTAGCAGCTGCCCTAAAAC 59.900 50.000 34.39 5.26 43.38 2.43
617 618 2.291540 ACCATTAGCAGCTGCCCTAAAA 60.292 45.455 34.39 20.29 43.38 1.52
618 619 1.284785 ACCATTAGCAGCTGCCCTAAA 59.715 47.619 34.39 22.68 43.38 1.85
619 620 0.918983 ACCATTAGCAGCTGCCCTAA 59.081 50.000 34.39 25.93 43.38 2.69
634 635 8.579006 CCAAGTGATATATATTTGCAACACCAT 58.421 33.333 0.00 0.00 0.00 3.55
672 675 3.328505 CCGAAAAATTTGCAGCAATCCT 58.671 40.909 9.12 0.00 0.00 3.24
676 679 1.596727 GTGCCGAAAAATTTGCAGCAA 59.403 42.857 2.83 2.83 33.80 3.91
686 689 5.941058 TGTATCTCTATTTGGTGCCGAAAAA 59.059 36.000 0.00 0.00 0.00 1.94
725 728 4.036971 TCAAAGGGTGATGTAAAACAACGG 59.963 41.667 0.00 0.00 0.00 4.44
771 774 4.051237 CAAGCAAGCCAAAGAAAAGTACC 58.949 43.478 0.00 0.00 0.00 3.34
805 809 4.277174 TGCACGTTGTGGTCAATATTCTTT 59.723 37.500 0.00 0.00 35.92 2.52
817 850 2.118683 CTCAATTTGTGCACGTTGTGG 58.881 47.619 21.28 14.67 33.64 4.17
818 851 3.038017 CTCTCAATTTGTGCACGTTGTG 58.962 45.455 21.28 19.52 36.51 3.33
833 866 3.973206 TTCTGGATAAACGGCTCTCAA 57.027 42.857 0.00 0.00 0.00 3.02
901 938 6.183360 CGTTTAGATCTTCTGCGATCCTTTTT 60.183 38.462 0.00 0.00 40.50 1.94
1085 1131 2.606519 AAGAGGGCTACCACGGCA 60.607 61.111 0.00 0.00 40.13 5.69
1482 1529 1.366679 GGTAAAACGAGCAGTAGGGC 58.633 55.000 0.00 0.00 0.00 5.19
1507 1554 7.543520 AGAACAGTACAATACTAAAGGCGTTAC 59.456 37.037 0.00 0.00 37.23 2.50
1546 1593 3.179830 CTCGCCAGACACACAGTAATAC 58.820 50.000 0.00 0.00 0.00 1.89
1559 1606 0.178767 AATGTGCATAGCTCGCCAGA 59.821 50.000 5.65 0.00 0.00 3.86
1571 1618 3.947196 ACTTCAGAGTTTGACAATGTGCA 59.053 39.130 0.00 0.00 34.94 4.57
1635 1683 5.452777 GTTCTACTTTTGCTTTAGCTGTGG 58.547 41.667 0.00 0.42 42.66 4.17
1661 1709 9.979578 CAATTAGCATCTCTATTCTCTACAACT 57.020 33.333 0.00 0.00 0.00 3.16
1667 1715 8.149647 CCAAGTCAATTAGCATCTCTATTCTCT 58.850 37.037 0.00 0.00 0.00 3.10
1668 1716 7.930865 ACCAAGTCAATTAGCATCTCTATTCTC 59.069 37.037 0.00 0.00 0.00 2.87
1669 1717 7.800092 ACCAAGTCAATTAGCATCTCTATTCT 58.200 34.615 0.00 0.00 0.00 2.40
1670 1718 8.341173 CAACCAAGTCAATTAGCATCTCTATTC 58.659 37.037 0.00 0.00 0.00 1.75
1671 1719 7.284034 CCAACCAAGTCAATTAGCATCTCTATT 59.716 37.037 0.00 0.00 0.00 1.73
1672 1720 6.769822 CCAACCAAGTCAATTAGCATCTCTAT 59.230 38.462 0.00 0.00 0.00 1.98
1673 1721 6.115446 CCAACCAAGTCAATTAGCATCTCTA 58.885 40.000 0.00 0.00 0.00 2.43
1684 1732 5.570320 ACTAATACAGCCAACCAAGTCAAT 58.430 37.500 0.00 0.00 0.00 2.57
1700 1748 1.474077 ACACCCACGTCGGACTAATAC 59.526 52.381 6.09 0.00 36.56 1.89
1709 1757 1.011333 AAGTTGAAACACCCACGTCG 58.989 50.000 0.00 0.00 0.00 5.12
1715 1763 1.136891 AGCAAGCAAGTTGAAACACCC 59.863 47.619 7.16 0.00 38.60 4.61
1764 1820 3.949754 ACAGTTCAACCATGGCATCATAG 59.050 43.478 13.04 0.00 31.33 2.23
1831 1890 7.803189 AGACAAAATAACTAGCGTGTGAAATTG 59.197 33.333 0.00 0.00 0.00 2.32
1856 1915 4.858692 CACAAAACCAGAAGAACAACACAG 59.141 41.667 0.00 0.00 0.00 3.66
2189 2248 3.266510 TCAATGTCATTCCCTCCTTCG 57.733 47.619 0.00 0.00 0.00 3.79
2351 2411 5.136105 AGAAAGCACTCAAGAGTTCCAAAT 58.864 37.500 0.00 0.00 40.20 2.32
2428 2619 7.933577 CCTCAATGCATAAATAAGGAGACAGTA 59.066 37.037 0.00 0.00 0.00 2.74
2481 2672 4.935205 TCACAGCTTAAAATCATACGCACT 59.065 37.500 0.00 0.00 0.00 4.40
2633 2824 3.731652 TTGTCCTGTTTTCCATTGCAG 57.268 42.857 0.00 0.00 0.00 4.41
3202 3408 8.773645 TGAATGCATAAATCGGAAGTTGTATAG 58.226 33.333 0.00 0.00 0.00 1.31
3207 3413 6.732154 AGATGAATGCATAAATCGGAAGTTG 58.268 36.000 0.00 0.00 34.11 3.16
3350 3562 5.147330 ACACATTAGAATCTCGACCAACA 57.853 39.130 0.00 0.00 0.00 3.33
3442 3654 9.671279 AAGAAATAAAATAGCCAAATCAAAGGG 57.329 29.630 0.00 0.00 0.00 3.95
4139 4351 8.784043 AGCTAACATAGATTGAAAAACGTTCTT 58.216 29.630 0.00 0.00 0.00 2.52
4140 4352 8.324163 AGCTAACATAGATTGAAAAACGTTCT 57.676 30.769 0.00 0.00 0.00 3.01
4141 4353 8.950403 AAGCTAACATAGATTGAAAAACGTTC 57.050 30.769 0.00 0.00 32.40 3.95
4152 4364 8.784043 AGAACGTTTTTCAAGCTAACATAGATT 58.216 29.630 0.46 0.00 34.19 2.40
4153 4365 8.324163 AGAACGTTTTTCAAGCTAACATAGAT 57.676 30.769 0.46 0.00 0.00 1.98
4154 4366 7.724305 AGAACGTTTTTCAAGCTAACATAGA 57.276 32.000 0.46 0.00 0.00 1.98
4163 4375 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
4166 4378 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
4167 4379 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
4168 4380 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4169 4381 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4170 4382 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4171 4383 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4172 4384 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4173 4385 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4174 4386 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4175 4387 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4176 4388 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4177 4389 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4178 4390 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4179 4391 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4180 4392 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4181 4393 4.044952 TCATACTCCCTCCGTCCCATAATA 59.955 45.833 0.00 0.00 0.00 0.98
4182 4394 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
4183 4395 2.178325 TCATACTCCCTCCGTCCCATAA 59.822 50.000 0.00 0.00 0.00 1.90
4184 4396 1.784593 TCATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
4185 4397 0.561184 TCATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
4186 4398 0.561184 ATCATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
4187 4399 2.599408 TATCATACTCCCTCCGTCCC 57.401 55.000 0.00 0.00 0.00 4.46
4188 4400 5.446860 TCATATATCATACTCCCTCCGTCC 58.553 45.833 0.00 0.00 0.00 4.79
4189 4401 7.589958 AATCATATATCATACTCCCTCCGTC 57.410 40.000 0.00 0.00 0.00 4.79
4190 4402 9.661954 AATAATCATATATCATACTCCCTCCGT 57.338 33.333 0.00 0.00 0.00 4.69
4342 4561 2.158769 TGGGTGCACATGGATGATAGTC 60.159 50.000 20.43 0.00 0.00 2.59
4610 4829 4.980573 AGTCTACTGCCAAACCAACATTA 58.019 39.130 0.00 0.00 0.00 1.90
4618 4837 8.979574 GTCATGTATATAAGTCTACTGCCAAAC 58.020 37.037 0.00 0.00 0.00 2.93
4667 4888 4.284829 TGTCTTGATGCACAGTCCATAA 57.715 40.909 0.00 0.00 0.00 1.90
4681 4902 4.099573 GCTACACCCTAGCTAATGTCTTGA 59.900 45.833 7.94 0.00 37.56 3.02
4716 4937 1.477700 GCCAAAGGCTGCAATGTATCA 59.522 47.619 0.50 0.00 46.69 2.15
4840 5061 3.741344 CCCTGAAACTAGACAACGTGAAG 59.259 47.826 0.00 0.00 0.00 3.02
4843 5064 1.798813 GCCCTGAAACTAGACAACGTG 59.201 52.381 0.00 0.00 0.00 4.49
4845 5066 2.457366 AGCCCTGAAACTAGACAACG 57.543 50.000 0.00 0.00 0.00 4.10
5008 5236 2.110578 GGGGGAACAATGCTTGCTTAT 58.889 47.619 0.00 0.00 0.00 1.73



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.