AutoCloner

Multiple sequence alignment - TraesCS6D01G163100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G163100	chr6D	100.000	4086	0	0	1	4086	142740669	142744754	0.000000e+00	7546
1	TraesCS6D01G163100	chr6A	90.008	2442	119	50	1713	4086	187733844	187736228	0.000000e+00	3042
2	TraesCS6D01G163100	chr6A	91.542	733	41	12	746	1472	187732804	187733521	0.000000e+00	990
3	TraesCS6D01G163100	chr6A	83.333	234	38	1	488	721	506508179	506508411	8.900000e-52	215
4	TraesCS6D01G163100	chr6B	91.628	2174	112	31	1503	3653	248348893	248351019	0.000000e+00	2942
5	TraesCS6D01G163100	chr6B	92.435	727	37	7	741	1465	248348184	248348894	0.000000e+00	1022
6	TraesCS6D01G163100	chr6B	85.360	403	22	18	3707	4086	248351034	248351422	2.300000e-102	383
7	TraesCS6D01G163100	chr6B	83.898	236	38	0	486	721	156142975	156142740	4.110000e-55	226
8	TraesCS6D01G163100	chr6B	83.544	237	37	2	486	721	172024374	172024139	1.910000e-53	220
9	TraesCS6D01G163100	chr5B	85.232	237	31	4	487	721	435653995	435654229	1.470000e-59	241
10	TraesCS6D01G163100	chr1D	84.681	235	36	0	487	721	357277447	357277681	6.830000e-58	235
11	TraesCS6D01G163100	chrUn	84.322	236	37	0	486	721	63365968	63366203	8.830000e-57	231
12	TraesCS6D01G163100	chrUn	83.051	236	40	0	486	721	36388277	36388042	8.900000e-52	215
13	TraesCS6D01G163100	chrUn	83.051	236	40	0	486	721	304607072	304606837	8.900000e-52	215
14	TraesCS6D01G163100	chr4B	82.845	239	40	1	483	721	297765911	297765674	3.200000e-51	213

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G163100	chr6D	142740669	142744754	4085	False	7546	7546	100.000000	1	4086	1	chr6D.!!$F1	4085
1	TraesCS6D01G163100	chr6A	187732804	187736228	3424	False	2016	3042	90.775000	746	4086	2	chr6A.!!$F2	3340
2	TraesCS6D01G163100	chr6B	248348184	248351422	3238	False	1449	2942	89.807667	741	4086	3	chr6B.!!$F1	3345

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
123	124	0.027716	CATGAGTAGGACGACCGTCG	59.972	60.0	19.24	19.24	45.41	5.12	F
859	861	0.034896	TCGGAAGCAGAAACAGGGAC	59.965	55.0	0.00	0.00	0.00	4.46	F
1257	1261	0.107897	TTGGCGCATCTGTTCCGTAT	60.108	50.0	10.83	0.00	0.00	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1826	1991	0.908198	ACTCCTGATGTCTTGCTCCC	59.092	55.000	0.0	0.00	4.30	R
2413	2608	2.095372	GGAAGGTAGCAAACACATACGC	59.905	50.000	0.0	0.00	4.42	R
3126	3329	1.139520	CATGCCGGTGCTTAAAGCC	59.860	57.895	1.9	41.51	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.834188	ATAACAACGCCTCCCTTTGG	58.166	50.000	0.00	0.00	0.00	3.28
20	21	0.891904	TAACAACGCCTCCCTTTGGC	60.892	55.000	0.00	0.00	46.42	4.52
25	26	3.661648	GCCTCCCTTTGGCCCTGA	61.662	66.667	0.00	0.00	44.32	3.86
26	27	3.001358	GCCTCCCTTTGGCCCTGAT	62.001	63.158	0.00	0.00	44.32	2.90
27	28	1.076485	CCTCCCTTTGGCCCTGATG	60.076	63.158	0.00	0.00	0.00	3.07
28	29	1.076485	CTCCCTTTGGCCCTGATGG	60.076	63.158	0.00	0.00	37.09	3.51
38	39	4.776322	CCTGATGGCGTGCCGGAA	62.776	66.667	5.05	0.00	39.42	4.30
39	40	3.499737	CTGATGGCGTGCCGGAAC	61.500	66.667	5.05	2.82	39.42	3.62
40	41	4.321966	TGATGGCGTGCCGGAACA	62.322	61.111	14.51	0.00	39.42	3.18
41	42	3.799755	GATGGCGTGCCGGAACAC	61.800	66.667	14.51	1.65	39.42	3.32
46	47	4.308458	CGTGCCGGAACACCTGGA	62.308	66.667	14.51	0.00	37.25	3.86
47	48	2.112297	GTGCCGGAACACCTGGAA	59.888	61.111	8.05	0.00	34.35	3.53
48	49	2.112297	TGCCGGAACACCTGGAAC	59.888	61.111	5.05	0.00	0.00	3.62
49	50	2.671963	GCCGGAACACCTGGAACC	60.672	66.667	5.05	0.00	0.00	3.62
50	51	2.833227	CCGGAACACCTGGAACCA	59.167	61.111	0.00	0.00	0.00	3.67
51	52	1.149627	CCGGAACACCTGGAACCAA	59.850	57.895	0.00	0.00	0.00	3.67
52	53	0.466555	CCGGAACACCTGGAACCAAA	60.467	55.000	0.00	0.00	0.00	3.28
53	54	0.951558	CGGAACACCTGGAACCAAAG	59.048	55.000	0.00	0.00	0.00	2.77
54	55	0.673985	GGAACACCTGGAACCAAAGC	59.326	55.000	0.00	0.00	0.00	3.51
55	56	1.398692	GAACACCTGGAACCAAAGCA	58.601	50.000	0.00	0.00	0.00	3.91
56	57	1.067060	GAACACCTGGAACCAAAGCAC	59.933	52.381	0.00	0.00	0.00	4.40
57	58	0.258774	ACACCTGGAACCAAAGCACT	59.741	50.000	0.00	0.00	0.00	4.40
58	59	1.341976	ACACCTGGAACCAAAGCACTT	60.342	47.619	0.00	0.00	0.00	3.16
59	60	1.756538	CACCTGGAACCAAAGCACTTT	59.243	47.619	0.00	0.00	0.00	2.66
60	61	2.031870	ACCTGGAACCAAAGCACTTTC	58.968	47.619	0.00	0.00	0.00	2.62
61	62	1.341209	CCTGGAACCAAAGCACTTTCC	59.659	52.381	0.00	0.00	38.43	3.13
62	63	1.341209	CTGGAACCAAAGCACTTTCCC	59.659	52.381	0.00	0.00	37.33	3.97
63	64	0.313987	GGAACCAAAGCACTTTCCCG	59.686	55.000	0.00	0.00	32.75	5.14
64	65	1.314730	GAACCAAAGCACTTTCCCGA	58.685	50.000	0.00	0.00	0.00	5.14
65	66	1.886542	GAACCAAAGCACTTTCCCGAT	59.113	47.619	0.00	0.00	0.00	4.18
66	67	2.871096	ACCAAAGCACTTTCCCGATA	57.129	45.000	0.00	0.00	0.00	2.92
67	68	2.433436	ACCAAAGCACTTTCCCGATAC	58.567	47.619	0.00	0.00	0.00	2.24
68	69	1.396996	CCAAAGCACTTTCCCGATACG	59.603	52.381	0.00	0.00	0.00	3.06
78	79	3.151710	CCGATACGGGCTGGTGGA	61.152	66.667	0.00	0.00	44.15	4.02
79	80	2.106332	CGATACGGGCTGGTGGAC	59.894	66.667	0.00	0.00	0.00	4.02
80	81	2.717044	CGATACGGGCTGGTGGACA	61.717	63.158	0.00	0.00	0.00	4.02
81	82	1.600107	GATACGGGCTGGTGGACAA	59.400	57.895	0.00	0.00	0.00	3.18
82	83	0.743345	GATACGGGCTGGTGGACAAC	60.743	60.000	0.00	0.00	0.00	3.32
83	84	2.515996	ATACGGGCTGGTGGACAACG	62.516	60.000	0.00	0.00	0.00	4.10
84	85	4.619227	CGGGCTGGTGGACAACGT	62.619	66.667	0.00	0.00	0.00	3.99
85	86	2.745037	GGGCTGGTGGACAACGTA	59.255	61.111	0.00	0.00	0.00	3.57
86	87	1.670083	GGGCTGGTGGACAACGTAC	60.670	63.158	0.00	0.00	0.00	3.67
87	88	1.070105	GGCTGGTGGACAACGTACA	59.930	57.895	0.00	0.00	0.00	2.90
88	89	0.533308	GGCTGGTGGACAACGTACAA	60.533	55.000	0.00	0.00	0.00	2.41
89	90	1.519408	GCTGGTGGACAACGTACAAT	58.481	50.000	0.00	0.00	0.00	2.71
90	91	2.613474	GGCTGGTGGACAACGTACAATA	60.613	50.000	0.00	0.00	0.00	1.90
91	92	3.068560	GCTGGTGGACAACGTACAATAA	58.931	45.455	0.00	0.00	0.00	1.40
92	93	3.120442	GCTGGTGGACAACGTACAATAAC	60.120	47.826	0.00	0.00	0.00	1.89
104	105	3.486108	CGTACAATAACGTCAGATCAGGC	59.514	47.826	0.00	0.00	38.07	4.85
105	106	3.610040	ACAATAACGTCAGATCAGGCA	57.390	42.857	0.00	0.00	0.00	4.75
106	107	4.142609	ACAATAACGTCAGATCAGGCAT	57.857	40.909	0.00	0.00	0.00	4.40
107	108	3.873361	ACAATAACGTCAGATCAGGCATG	59.127	43.478	0.00	0.00	0.00	4.06
108	109	4.122046	CAATAACGTCAGATCAGGCATGA	58.878	43.478	2.36	2.36	40.50	3.07
109	110	2.306341	AACGTCAGATCAGGCATGAG	57.694	50.000	7.33	0.00	39.29	2.90
110	111	1.189752	ACGTCAGATCAGGCATGAGT	58.810	50.000	7.33	0.00	39.29	3.41
111	112	2.379005	ACGTCAGATCAGGCATGAGTA	58.621	47.619	7.33	0.00	39.29	2.59
112	113	2.360483	ACGTCAGATCAGGCATGAGTAG	59.640	50.000	7.33	0.00	39.29	2.57
113	114	2.288091	CGTCAGATCAGGCATGAGTAGG	60.288	54.545	7.33	0.00	39.29	3.18
114	115	2.961741	GTCAGATCAGGCATGAGTAGGA	59.038	50.000	7.33	0.00	39.29	2.94
115	116	2.961741	TCAGATCAGGCATGAGTAGGAC	59.038	50.000	7.33	0.00	39.29	3.85
116	117	1.959985	AGATCAGGCATGAGTAGGACG	59.040	52.381	7.33	0.00	39.29	4.79
117	118	1.957177	GATCAGGCATGAGTAGGACGA	59.043	52.381	7.33	0.00	39.29	4.20
118	119	1.103803	TCAGGCATGAGTAGGACGAC	58.896	55.000	0.00	0.00	0.00	4.34
119	120	0.103208	CAGGCATGAGTAGGACGACC	59.897	60.000	0.00	0.00	0.00	4.79
120	121	1.065928	GGCATGAGTAGGACGACCG	59.934	63.158	0.00	0.00	41.83	4.79
121	122	1.664321	GGCATGAGTAGGACGACCGT	61.664	60.000	0.00	0.00	41.83	4.83
122	123	0.248539	GCATGAGTAGGACGACCGTC	60.249	60.000	13.56	13.56	43.87	4.79
123	124	0.027716	CATGAGTAGGACGACCGTCG	59.972	60.000	19.24	19.24	45.41	5.12
132	133	2.178273	CGACCGTCGTGCTCATCA	59.822	61.111	12.91	0.00	34.72	3.07
133	134	2.152699	CGACCGTCGTGCTCATCAC	61.153	63.158	12.91	0.00	42.23	3.06
134	135	1.080772	GACCGTCGTGCTCATCACA	60.081	57.895	0.00	0.00	45.92	3.58
135	136	1.344942	GACCGTCGTGCTCATCACAC	61.345	60.000	0.00	0.00	45.92	3.82
136	137	2.094659	CCGTCGTGCTCATCACACC	61.095	63.158	0.00	0.00	45.92	4.16
137	138	2.094659	CGTCGTGCTCATCACACCC	61.095	63.158	0.00	0.00	45.92	4.61
138	139	1.293498	GTCGTGCTCATCACACCCT	59.707	57.895	0.00	0.00	45.92	4.34
139	140	1.016130	GTCGTGCTCATCACACCCTG	61.016	60.000	0.00	0.00	45.92	4.45
140	141	1.742880	CGTGCTCATCACACCCTGG	60.743	63.158	0.00	0.00	45.92	4.45
141	142	1.679311	GTGCTCATCACACCCTGGA	59.321	57.895	0.00	0.00	44.98	3.86
142	143	0.254178	GTGCTCATCACACCCTGGAT	59.746	55.000	0.00	0.00	44.98	3.41
143	144	0.253894	TGCTCATCACACCCTGGATG	59.746	55.000	0.00	0.00	41.73	3.51
144	145	0.465097	GCTCATCACACCCTGGATGG	60.465	60.000	0.00	0.00	40.94	3.51
145	146	0.914644	CTCATCACACCCTGGATGGT	59.085	55.000	0.00	0.00	40.94	3.55
146	147	1.283029	CTCATCACACCCTGGATGGTT	59.717	52.381	0.00	0.00	40.94	3.67
147	148	1.281867	TCATCACACCCTGGATGGTTC	59.718	52.381	0.00	0.00	40.94	3.62
148	149	0.253044	ATCACACCCTGGATGGTTCG	59.747	55.000	0.00	0.00	36.12	3.95
149	150	0.834261	TCACACCCTGGATGGTTCGA	60.834	55.000	0.00	0.00	36.12	3.71
150	151	0.253044	CACACCCTGGATGGTTCGAT	59.747	55.000	0.00	0.00	36.12	3.59
151	152	0.541863	ACACCCTGGATGGTTCGATC	59.458	55.000	0.00	0.00	36.12	3.69
152	153	0.833287	CACCCTGGATGGTTCGATCT	59.167	55.000	0.00	0.00	36.12	2.75
153	154	1.123928	ACCCTGGATGGTTCGATCTC	58.876	55.000	0.00	0.00	33.91	2.75
154	155	1.123077	CCCTGGATGGTTCGATCTCA	58.877	55.000	0.00	0.00	0.00	3.27
155	156	1.486310	CCCTGGATGGTTCGATCTCAA	59.514	52.381	0.00	0.00	0.00	3.02
156	157	2.484417	CCCTGGATGGTTCGATCTCAAG	60.484	54.545	0.00	0.00	0.00	3.02
157	158	2.484417	CCTGGATGGTTCGATCTCAAGG	60.484	54.545	0.00	0.00	0.00	3.61
158	159	1.486310	TGGATGGTTCGATCTCAAGGG	59.514	52.381	0.00	0.00	0.00	3.95
159	160	1.202698	GGATGGTTCGATCTCAAGGGG	60.203	57.143	0.00	0.00	0.00	4.79
160	161	0.839946	ATGGTTCGATCTCAAGGGGG	59.160	55.000	0.00	0.00	0.00	5.40
161	162	1.153147	GGTTCGATCTCAAGGGGGC	60.153	63.158	0.00	0.00	0.00	5.80
162	163	1.627297	GGTTCGATCTCAAGGGGGCT	61.627	60.000	0.00	0.00	0.00	5.19
163	164	0.462759	GTTCGATCTCAAGGGGGCTG	60.463	60.000	0.00	0.00	0.00	4.85
164	165	1.626356	TTCGATCTCAAGGGGGCTGG	61.626	60.000	0.00	0.00	0.00	4.85
165	166	2.194326	GATCTCAAGGGGGCTGGC	59.806	66.667	0.00	0.00	0.00	4.85
166	167	2.286732	ATCTCAAGGGGGCTGGCT	60.287	61.111	0.00	0.00	0.00	4.75
167	168	1.004758	ATCTCAAGGGGGCTGGCTA	59.995	57.895	0.00	0.00	0.00	3.93
168	169	0.402566	ATCTCAAGGGGGCTGGCTAT	60.403	55.000	0.00	0.00	0.00	2.97
169	170	1.150081	CTCAAGGGGGCTGGCTATG	59.850	63.158	0.00	0.00	0.00	2.23
170	171	2.196776	CAAGGGGGCTGGCTATGG	59.803	66.667	0.00	0.00	0.00	2.74
171	172	2.287194	AAGGGGGCTGGCTATGGT	60.287	61.111	0.00	0.00	0.00	3.55
172	173	2.693871	AAGGGGGCTGGCTATGGTG	61.694	63.158	0.00	0.00	0.00	4.17
173	174	4.902645	GGGGGCTGGCTATGGTGC	62.903	72.222	0.00	0.00	0.00	5.01
174	175	4.127744	GGGGCTGGCTATGGTGCA	62.128	66.667	0.00	0.00	34.04	4.57
175	176	2.830370	GGGCTGGCTATGGTGCAC	60.830	66.667	8.80	8.80	34.04	4.57
176	177	2.830370	GGCTGGCTATGGTGCACC	60.830	66.667	29.67	29.67	34.04	5.01
194	195	3.495124	CAAGTTTTGGGCGGTGATG	57.505	52.632	0.00	0.00	0.00	3.07
195	196	0.673437	CAAGTTTTGGGCGGTGATGT	59.327	50.000	0.00	0.00	0.00	3.06
196	197	0.958822	AAGTTTTGGGCGGTGATGTC	59.041	50.000	0.00	0.00	0.00	3.06
197	198	0.179004	AGTTTTGGGCGGTGATGTCA	60.179	50.000	0.00	0.00	0.00	3.58
198	199	0.887933	GTTTTGGGCGGTGATGTCAT	59.112	50.000	0.00	0.00	0.00	3.06
199	200	2.088423	GTTTTGGGCGGTGATGTCATA	58.912	47.619	0.00	0.00	0.00	2.15
200	201	2.036958	TTTGGGCGGTGATGTCATAG	57.963	50.000	0.00	0.00	0.00	2.23
201	202	0.908910	TTGGGCGGTGATGTCATAGT	59.091	50.000	0.00	0.00	0.00	2.12
202	203	0.464036	TGGGCGGTGATGTCATAGTC	59.536	55.000	0.00	0.00	0.00	2.59
203	204	0.753262	GGGCGGTGATGTCATAGTCT	59.247	55.000	0.00	0.00	0.00	3.24
204	205	1.139058	GGGCGGTGATGTCATAGTCTT	59.861	52.381	0.00	0.00	0.00	3.01
205	206	2.474816	GGCGGTGATGTCATAGTCTTC	58.525	52.381	0.00	0.00	0.00	2.87
206	207	2.101582	GGCGGTGATGTCATAGTCTTCT	59.898	50.000	0.00	0.00	0.00	2.85
207	208	3.318275	GGCGGTGATGTCATAGTCTTCTA	59.682	47.826	0.00	0.00	0.00	2.10
208	209	4.541779	GCGGTGATGTCATAGTCTTCTAG	58.458	47.826	0.00	0.00	0.00	2.43
209	210	4.276183	GCGGTGATGTCATAGTCTTCTAGA	59.724	45.833	0.00	0.00	0.00	2.43
210	211	5.048364	GCGGTGATGTCATAGTCTTCTAGAT	60.048	44.000	0.00	0.00	0.00	1.98
211	212	6.515862	GCGGTGATGTCATAGTCTTCTAGATT	60.516	42.308	0.00	0.00	0.00	2.40
212	213	6.860539	CGGTGATGTCATAGTCTTCTAGATTG	59.139	42.308	0.00	0.00	0.00	2.67
213	214	7.151308	GGTGATGTCATAGTCTTCTAGATTGG	58.849	42.308	0.00	0.00	0.00	3.16
214	215	7.151308	GTGATGTCATAGTCTTCTAGATTGGG	58.849	42.308	0.00	0.00	0.00	4.12
215	216	5.537300	TGTCATAGTCTTCTAGATTGGGC	57.463	43.478	0.00	0.00	0.00	5.36
216	217	4.345257	TGTCATAGTCTTCTAGATTGGGCC	59.655	45.833	0.00	0.00	0.00	5.80
217	218	3.904339	TCATAGTCTTCTAGATTGGGCCC	59.096	47.826	17.59	17.59	0.00	5.80
218	219	1.512735	AGTCTTCTAGATTGGGCCCC	58.487	55.000	22.27	3.22	0.00	5.80
219	220	1.010170	AGTCTTCTAGATTGGGCCCCT	59.990	52.381	22.27	12.28	0.00	4.79
220	221	1.418264	GTCTTCTAGATTGGGCCCCTC	59.582	57.143	22.27	16.61	0.00	4.30
221	222	0.767998	CTTCTAGATTGGGCCCCTCC	59.232	60.000	22.27	7.91	0.00	4.30
230	231	4.847367	GGCCCCTCCCCATTGCAG	62.847	72.222	0.00	0.00	0.00	4.41
235	236	4.809496	CTCCCCATTGCAGCGGCT	62.809	66.667	10.92	0.00	41.91	5.52
238	239	3.063704	CCCATTGCAGCGGCTGAA	61.064	61.111	32.72	21.47	41.91	3.02
239	240	2.420568	CCCATTGCAGCGGCTGAAT	61.421	57.895	32.72	23.22	41.91	2.57
240	241	1.514087	CCATTGCAGCGGCTGAATT	59.486	52.632	32.72	16.65	41.91	2.17
241	242	0.804544	CCATTGCAGCGGCTGAATTG	60.805	55.000	32.72	26.09	41.91	2.32
242	243	0.804544	CATTGCAGCGGCTGAATTGG	60.805	55.000	32.72	11.49	41.91	3.16
243	244	0.966875	ATTGCAGCGGCTGAATTGGA	60.967	50.000	32.72	8.45	41.91	3.53
244	245	0.966875	TTGCAGCGGCTGAATTGGAT	60.967	50.000	32.72	0.00	41.91	3.41
245	246	0.107263	TGCAGCGGCTGAATTGGATA	60.107	50.000	32.72	5.51	41.91	2.59
246	247	1.024271	GCAGCGGCTGAATTGGATAA	58.976	50.000	32.72	0.00	36.96	1.75
247	248	1.002033	GCAGCGGCTGAATTGGATAAG	60.002	52.381	32.72	2.57	36.96	1.73
248	249	1.002033	CAGCGGCTGAATTGGATAAGC	60.002	52.381	25.33	0.00	32.44	3.09
249	250	0.040958	GCGGCTGAATTGGATAAGCG	60.041	55.000	0.00	0.00	36.50	4.68
250	251	0.588252	CGGCTGAATTGGATAAGCGG	59.412	55.000	0.00	0.00	36.50	5.52
251	252	1.680338	GGCTGAATTGGATAAGCGGT	58.320	50.000	0.00	0.00	36.50	5.68
252	253	2.805295	CGGCTGAATTGGATAAGCGGTA	60.805	50.000	0.00	0.00	36.50	4.02
253	254	3.211045	GGCTGAATTGGATAAGCGGTAA	58.789	45.455	0.00	0.00	36.50	2.85
254	255	3.003378	GGCTGAATTGGATAAGCGGTAAC	59.997	47.826	0.00	0.00	36.50	2.50
255	256	3.003378	GCTGAATTGGATAAGCGGTAACC	59.997	47.826	0.00	0.00	0.00	2.85
256	257	3.547746	TGAATTGGATAAGCGGTAACCC	58.452	45.455	0.00	0.00	0.00	4.11
257	258	3.201266	TGAATTGGATAAGCGGTAACCCT	59.799	43.478	0.00	0.00	0.00	4.34
258	259	4.409574	TGAATTGGATAAGCGGTAACCCTA	59.590	41.667	0.00	0.00	0.00	3.53
259	260	5.104444	TGAATTGGATAAGCGGTAACCCTAA	60.104	40.000	0.00	0.00	0.00	2.69
260	261	4.840716	TTGGATAAGCGGTAACCCTAAA	57.159	40.909	0.00	0.00	0.00	1.85
261	262	4.840716	TGGATAAGCGGTAACCCTAAAA	57.159	40.909	0.00	0.00	0.00	1.52
262	263	5.176741	TGGATAAGCGGTAACCCTAAAAA	57.823	39.130	0.00	0.00	0.00	1.94
280	281	3.793797	AAAATAATAGTTGCGCCCACC	57.206	42.857	4.18	0.00	0.00	4.61
281	282	2.729028	AATAATAGTTGCGCCCACCT	57.271	45.000	4.18	0.00	0.00	4.00
282	283	2.729028	ATAATAGTTGCGCCCACCTT	57.271	45.000	4.18	1.42	0.00	3.50
283	284	2.500392	TAATAGTTGCGCCCACCTTT	57.500	45.000	4.18	1.24	0.00	3.11
284	285	1.173913	AATAGTTGCGCCCACCTTTC	58.826	50.000	4.18	0.00	0.00	2.62
285	286	1.024579	ATAGTTGCGCCCACCTTTCG	61.025	55.000	4.18	0.00	0.00	3.46
286	287	2.386064	TAGTTGCGCCCACCTTTCGT	62.386	55.000	4.18	0.00	0.00	3.85
287	288	3.283684	TTGCGCCCACCTTTCGTG	61.284	61.111	4.18	0.00	42.62	4.35
292	293	4.278513	CCCACCTTTCGTGCCCCA	62.279	66.667	0.00	0.00	41.53	4.96
293	294	2.035626	CCACCTTTCGTGCCCCAT	59.964	61.111	0.00	0.00	41.53	4.00
294	295	1.301623	CCACCTTTCGTGCCCCATA	59.698	57.895	0.00	0.00	41.53	2.74
295	296	0.322997	CCACCTTTCGTGCCCCATAA	60.323	55.000	0.00	0.00	41.53	1.90
296	297	1.684869	CCACCTTTCGTGCCCCATAAT	60.685	52.381	0.00	0.00	41.53	1.28
297	298	2.099405	CACCTTTCGTGCCCCATAATT	58.901	47.619	0.00	0.00	35.18	1.40
298	299	3.283751	CACCTTTCGTGCCCCATAATTA	58.716	45.455	0.00	0.00	35.18	1.40
299	300	3.888930	CACCTTTCGTGCCCCATAATTAT	59.111	43.478	0.00	0.00	35.18	1.28
300	301	3.888930	ACCTTTCGTGCCCCATAATTATG	59.111	43.478	17.11	17.11	0.00	1.90
301	302	7.231762	CACCTTTCGTGCCCCATAATTATGG	62.232	48.000	30.31	30.31	43.15	2.74
320	321	9.541884	AATTATGGACAGGTTTTAATAGTGGTT	57.458	29.630	0.00	0.00	0.00	3.67
321	322	8.943594	TTATGGACAGGTTTTAATAGTGGTTT	57.056	30.769	0.00	0.00	0.00	3.27
322	323	6.642707	TGGACAGGTTTTAATAGTGGTTTG	57.357	37.500	0.00	0.00	0.00	2.93
323	324	5.010213	TGGACAGGTTTTAATAGTGGTTTGC	59.990	40.000	0.00	0.00	0.00	3.68
324	325	5.010213	GGACAGGTTTTAATAGTGGTTTGCA	59.990	40.000	0.00	0.00	0.00	4.08
325	326	6.295067	GGACAGGTTTTAATAGTGGTTTGCAT	60.295	38.462	0.00	0.00	0.00	3.96
326	327	6.454795	ACAGGTTTTAATAGTGGTTTGCATG	58.545	36.000	0.00	0.00	0.00	4.06
327	328	5.348451	CAGGTTTTAATAGTGGTTTGCATGC	59.652	40.000	11.82	11.82	0.00	4.06
328	329	4.629634	GGTTTTAATAGTGGTTTGCATGCC	59.370	41.667	16.68	0.00	0.00	4.40
329	330	5.233988	GTTTTAATAGTGGTTTGCATGCCA	58.766	37.500	16.68	0.00	0.00	4.92
330	331	5.674052	TTTAATAGTGGTTTGCATGCCAT	57.326	34.783	16.68	5.52	37.09	4.40
331	332	3.530265	AATAGTGGTTTGCATGCCATG	57.470	42.857	16.68	0.00	37.09	3.66
332	333	1.921982	TAGTGGTTTGCATGCCATGT	58.078	45.000	16.68	6.58	37.09	3.21
333	334	1.050204	AGTGGTTTGCATGCCATGTT	58.950	45.000	16.68	0.00	37.09	2.71
334	335	1.417145	AGTGGTTTGCATGCCATGTTT	59.583	42.857	16.68	0.00	37.09	2.83
335	336	2.158784	AGTGGTTTGCATGCCATGTTTT	60.159	40.909	16.68	0.00	37.09	2.43
336	337	2.617774	GTGGTTTGCATGCCATGTTTTT	59.382	40.909	16.68	0.00	37.09	1.94
361	362	9.463902	TTTTTACGTATTGAGGGGATTAATCAA	57.536	29.630	17.07	4.46	37.36	2.57
362	363	9.635404	TTTTACGTATTGAGGGGATTAATCAAT	57.365	29.630	17.07	11.24	43.93	2.57
363	364	8.615878	TTACGTATTGAGGGGATTAATCAATG	57.384	34.615	17.07	2.15	42.19	2.82
364	365	6.003950	ACGTATTGAGGGGATTAATCAATGG	58.996	40.000	17.07	8.33	42.19	3.16
365	366	5.106157	CGTATTGAGGGGATTAATCAATGGC	60.106	44.000	17.07	6.47	42.19	4.40
366	367	3.969466	TGAGGGGATTAATCAATGGCA	57.031	42.857	17.07	5.65	0.00	4.92
367	368	4.262891	TGAGGGGATTAATCAATGGCAA	57.737	40.909	17.07	0.00	0.00	4.52
368	369	4.618635	TGAGGGGATTAATCAATGGCAAA	58.381	39.130	17.07	0.00	0.00	3.68
369	370	5.028802	TGAGGGGATTAATCAATGGCAAAA	58.971	37.500	17.07	0.00	0.00	2.44
370	371	5.104982	TGAGGGGATTAATCAATGGCAAAAC	60.105	40.000	17.07	0.00	0.00	2.43
371	372	5.032170	AGGGGATTAATCAATGGCAAAACT	58.968	37.500	17.07	0.00	0.00	2.66
372	373	5.104817	AGGGGATTAATCAATGGCAAAACTG	60.105	40.000	17.07	0.00	0.00	3.16
373	374	5.118286	GGGATTAATCAATGGCAAAACTGG	58.882	41.667	17.07	0.00	0.00	4.00
374	375	4.571984	GGATTAATCAATGGCAAAACTGGC	59.428	41.667	17.07	0.00	0.00	4.85
379	380	2.339348	TGGCAAAACTGGCATGCG	59.661	55.556	12.44	0.62	40.94	4.73
380	381	2.198969	TGGCAAAACTGGCATGCGA	61.199	52.632	12.44	6.97	40.94	5.10
381	382	1.216178	GGCAAAACTGGCATGCGAT	59.784	52.632	12.44	0.00	40.94	4.58
382	383	1.079875	GGCAAAACTGGCATGCGATG	61.080	55.000	12.44	4.05	40.94	3.84
383	384	0.388907	GCAAAACTGGCATGCGATGT	60.389	50.000	12.44	7.31	0.00	3.06
384	385	1.342555	CAAAACTGGCATGCGATGTG	58.657	50.000	12.44	0.00	0.00	3.21
385	386	1.068402	CAAAACTGGCATGCGATGTGA	60.068	47.619	12.44	0.00	0.00	3.58
386	387	1.246649	AAACTGGCATGCGATGTGAA	58.753	45.000	12.44	0.00	0.00	3.18
387	388	0.806868	AACTGGCATGCGATGTGAAG	59.193	50.000	12.44	3.01	0.00	3.02
388	389	1.063649	CTGGCATGCGATGTGAAGC	59.936	57.895	12.44	0.00	0.00	3.86
389	390	1.374343	CTGGCATGCGATGTGAAGCT	61.374	55.000	12.44	0.00	0.00	3.74
390	391	1.063649	GGCATGCGATGTGAAGCTG	59.936	57.895	12.44	0.00	0.00	4.24
391	392	1.371337	GGCATGCGATGTGAAGCTGA	61.371	55.000	12.44	0.00	0.00	4.26
392	393	0.448990	GCATGCGATGTGAAGCTGAA	59.551	50.000	0.00	0.00	0.00	3.02
393	394	1.792993	GCATGCGATGTGAAGCTGAAC	60.793	52.381	0.00	0.00	0.00	3.18
394	395	0.723414	ATGCGATGTGAAGCTGAACG	59.277	50.000	0.00	0.00	0.00	3.95
395	396	0.319469	TGCGATGTGAAGCTGAACGA	60.319	50.000	0.00	0.00	0.00	3.85
396	397	0.790207	GCGATGTGAAGCTGAACGAA	59.210	50.000	0.00	0.00	0.00	3.85
397	398	1.201855	GCGATGTGAAGCTGAACGAAG	60.202	52.381	0.00	0.00	0.00	3.79
398	399	1.201855	CGATGTGAAGCTGAACGAAGC	60.202	52.381	0.00	0.00	43.88	3.86
404	405	3.423154	GCTGAACGAAGCGGGGTG	61.423	66.667	0.00	0.00	32.56	4.61
405	406	2.742372	CTGAACGAAGCGGGGTGG	60.742	66.667	0.00	0.00	0.00	4.61
406	407	4.323477	TGAACGAAGCGGGGTGGG	62.323	66.667	0.00	0.00	0.00	4.61
422	423	4.410400	GGGTGGGGTGAGCGGAAG	62.410	72.222	0.00	0.00	0.00	3.46
423	424	3.637273	GGTGGGGTGAGCGGAAGT	61.637	66.667	0.00	0.00	0.00	3.01
424	425	2.358737	GTGGGGTGAGCGGAAGTG	60.359	66.667	0.00	0.00	0.00	3.16
425	426	3.636231	TGGGGTGAGCGGAAGTGG	61.636	66.667	0.00	0.00	0.00	4.00
426	427	4.410400	GGGGTGAGCGGAAGTGGG	62.410	72.222	0.00	0.00	0.00	4.61
427	428	3.319198	GGGTGAGCGGAAGTGGGA	61.319	66.667	0.00	0.00	0.00	4.37
428	429	2.266055	GGTGAGCGGAAGTGGGAG	59.734	66.667	0.00	0.00	0.00	4.30
429	430	2.266055	GTGAGCGGAAGTGGGAGG	59.734	66.667	0.00	0.00	0.00	4.30
430	431	2.203788	TGAGCGGAAGTGGGAGGT	60.204	61.111	0.00	0.00	0.00	3.85
431	432	2.283529	TGAGCGGAAGTGGGAGGTC	61.284	63.158	0.00	0.00	0.00	3.85
432	433	3.358076	GAGCGGAAGTGGGAGGTCG	62.358	68.421	0.00	0.00	0.00	4.79
433	434	3.379445	GCGGAAGTGGGAGGTCGA	61.379	66.667	0.00	0.00	0.00	4.20
434	435	2.939261	GCGGAAGTGGGAGGTCGAA	61.939	63.158	0.00	0.00	0.00	3.71
435	436	1.080025	CGGAAGTGGGAGGTCGAAC	60.080	63.158	0.00	0.00	0.00	3.95
436	437	1.812686	CGGAAGTGGGAGGTCGAACA	61.813	60.000	1.87	0.00	0.00	3.18
437	438	0.395312	GGAAGTGGGAGGTCGAACAA	59.605	55.000	1.87	0.00	0.00	2.83
438	439	1.202722	GGAAGTGGGAGGTCGAACAAA	60.203	52.381	1.87	0.00	0.00	2.83
439	440	2.567985	GAAGTGGGAGGTCGAACAAAA	58.432	47.619	1.87	0.00	0.00	2.44
440	441	1.963172	AGTGGGAGGTCGAACAAAAC	58.037	50.000	1.87	0.00	0.00	2.43
441	442	1.489230	AGTGGGAGGTCGAACAAAACT	59.511	47.619	1.87	0.00	0.00	2.66
442	443	2.701951	AGTGGGAGGTCGAACAAAACTA	59.298	45.455	1.87	0.00	0.00	2.24
443	444	3.135167	AGTGGGAGGTCGAACAAAACTAA	59.865	43.478	1.87	0.00	0.00	2.24
444	445	3.497262	GTGGGAGGTCGAACAAAACTAAG	59.503	47.826	1.87	0.00	0.00	2.18
445	446	2.483106	GGGAGGTCGAACAAAACTAAGC	59.517	50.000	1.87	0.00	0.00	3.09
446	447	2.157085	GGAGGTCGAACAAAACTAAGCG	59.843	50.000	1.87	0.00	0.00	4.68
447	448	3.054878	GAGGTCGAACAAAACTAAGCGA	58.945	45.455	1.87	0.00	0.00	4.93
448	449	2.798847	AGGTCGAACAAAACTAAGCGAC	59.201	45.455	1.87	0.00	45.05	5.19
449	450	2.409371	GGTCGAACAAAACTAAGCGACG	60.409	50.000	0.00	0.00	46.26	5.12
450	451	2.468777	GTCGAACAAAACTAAGCGACGA	59.531	45.455	0.00	0.00	38.68	4.20
451	452	3.061006	GTCGAACAAAACTAAGCGACGAA	60.061	43.478	0.00	0.00	38.68	3.85
452	453	3.551082	TCGAACAAAACTAAGCGACGAAA	59.449	39.130	0.00	0.00	0.00	3.46
453	454	3.892552	CGAACAAAACTAAGCGACGAAAG	59.107	43.478	0.00	0.00	0.00	2.62
454	455	4.317558	CGAACAAAACTAAGCGACGAAAGA	60.318	41.667	0.00	0.00	0.00	2.52
455	456	4.448363	ACAAAACTAAGCGACGAAAGAC	57.552	40.909	0.00	0.00	0.00	3.01
467	468	2.141535	CGAAAGACGGGAGATGGATC	57.858	55.000	0.00	0.00	38.46	3.36
468	469	1.269831	CGAAAGACGGGAGATGGATCC	60.270	57.143	4.20	4.20	38.76	3.36
469	470	2.043227	GAAAGACGGGAGATGGATCCT	58.957	52.381	14.23	0.00	39.50	3.24
470	471	2.182516	AAGACGGGAGATGGATCCTT	57.817	50.000	14.23	6.57	39.50	3.36
471	472	3.330126	AAGACGGGAGATGGATCCTTA	57.670	47.619	14.23	0.00	39.50	2.69
472	473	2.599677	AGACGGGAGATGGATCCTTAC	58.400	52.381	14.23	4.36	39.50	2.34
473	474	2.178106	AGACGGGAGATGGATCCTTACT	59.822	50.000	14.23	9.32	39.50	2.24
474	475	2.966516	GACGGGAGATGGATCCTTACTT	59.033	50.000	14.23	0.00	39.50	2.24
475	476	3.385115	ACGGGAGATGGATCCTTACTTT	58.615	45.455	14.23	0.00	39.50	2.66
476	477	3.780850	ACGGGAGATGGATCCTTACTTTT	59.219	43.478	14.23	0.00	39.50	2.27
477	478	4.227527	ACGGGAGATGGATCCTTACTTTTT	59.772	41.667	14.23	0.00	39.50	1.94
513	514	8.756927	ACTACCTTTGTCCTAGTTTATTAGTCC	58.243	37.037	0.00	0.00	0.00	3.85
514	515	7.809880	ACCTTTGTCCTAGTTTATTAGTCCT	57.190	36.000	0.00	0.00	0.00	3.85
515	516	8.215954	ACCTTTGTCCTAGTTTATTAGTCCTT	57.784	34.615	0.00	0.00	0.00	3.36
516	517	9.330220	ACCTTTGTCCTAGTTTATTAGTCCTTA	57.670	33.333	0.00	0.00	0.00	2.69
531	532	8.588290	ATTAGTCCTTATTGTATTTTGTGCCA	57.412	30.769	0.00	0.00	0.00	4.92
532	533	6.909550	AGTCCTTATTGTATTTTGTGCCAA	57.090	33.333	0.00	0.00	0.00	4.52
533	534	7.296628	AGTCCTTATTGTATTTTGTGCCAAA	57.703	32.000	0.00	0.00	0.00	3.28
534	535	7.151976	AGTCCTTATTGTATTTTGTGCCAAAC	58.848	34.615	0.52	0.00	0.00	2.93
535	536	7.015195	AGTCCTTATTGTATTTTGTGCCAAACT	59.985	33.333	0.52	0.00	0.00	2.66
536	537	7.655732	GTCCTTATTGTATTTTGTGCCAAACTT	59.344	33.333	0.52	0.00	0.00	2.66
537	538	8.207545	TCCTTATTGTATTTTGTGCCAAACTTT	58.792	29.630	0.52	0.00	0.00	2.66
538	539	8.281893	CCTTATTGTATTTTGTGCCAAACTTTG	58.718	33.333	0.52	0.00	0.00	2.77
539	540	8.948631	TTATTGTATTTTGTGCCAAACTTTGA	57.051	26.923	2.87	0.00	0.00	2.69
540	541	9.553064	TTATTGTATTTTGTGCCAAACTTTGAT	57.447	25.926	2.87	0.00	0.00	2.57
541	542	7.475771	TTGTATTTTGTGCCAAACTTTGATC	57.524	32.000	2.87	0.00	0.00	2.92
542	543	6.577103	TGTATTTTGTGCCAAACTTTGATCA	58.423	32.000	2.87	0.00	0.00	2.92
543	544	7.215789	TGTATTTTGTGCCAAACTTTGATCAT	58.784	30.769	0.00	0.00	0.00	2.45
544	545	8.363390	TGTATTTTGTGCCAAACTTTGATCATA	58.637	29.630	0.00	0.00	0.00	2.15
545	546	7.894376	ATTTTGTGCCAAACTTTGATCATAG	57.106	32.000	11.18	11.18	0.00	2.23
546	547	6.647334	TTTGTGCCAAACTTTGATCATAGA	57.353	33.333	18.61	0.00	0.00	1.98
547	548	6.839124	TTGTGCCAAACTTTGATCATAGAT	57.161	33.333	18.61	5.21	0.00	1.98
548	549	6.839124	TGTGCCAAACTTTGATCATAGATT	57.161	33.333	18.61	10.89	0.00	2.40
549	550	7.230849	TGTGCCAAACTTTGATCATAGATTT	57.769	32.000	18.61	12.08	0.00	2.17
550	551	8.347004	TGTGCCAAACTTTGATCATAGATTTA	57.653	30.769	18.61	1.59	0.00	1.40
551	552	8.801299	TGTGCCAAACTTTGATCATAGATTTAA	58.199	29.630	18.61	0.00	0.00	1.52
552	553	9.076596	GTGCCAAACTTTGATCATAGATTTAAC	57.923	33.333	18.61	8.02	0.00	2.01
553	554	9.023962	TGCCAAACTTTGATCATAGATTTAACT	57.976	29.630	18.61	0.00	0.00	2.24
554	555	9.860898	GCCAAACTTTGATCATAGATTTAACTT	57.139	29.630	18.61	0.00	0.00	2.66
570	571	9.979578	AGATTTAACTTACAAAATGTTCATGCA	57.020	25.926	0.00	0.00	0.00	3.96
577	578	9.740239	ACTTACAAAATGTTCATGCATATCATC	57.260	29.630	0.00	0.00	31.79	2.92
578	579	8.785468	TTACAAAATGTTCATGCATATCATCG	57.215	30.769	0.00	0.84	31.79	3.84
579	580	7.030075	ACAAAATGTTCATGCATATCATCGA	57.970	32.000	0.00	0.00	31.79	3.59
580	581	7.482474	ACAAAATGTTCATGCATATCATCGAA	58.518	30.769	0.00	0.00	31.79	3.71
581	582	7.975058	ACAAAATGTTCATGCATATCATCGAAA	59.025	29.630	0.00	0.00	31.79	3.46
582	583	8.809478	CAAAATGTTCATGCATATCATCGAAAA	58.191	29.630	0.00	0.00	31.79	2.29
583	584	9.537192	AAAATGTTCATGCATATCATCGAAAAT	57.463	25.926	0.00	0.00	31.79	1.82
584	585	9.537192	AAATGTTCATGCATATCATCGAAAATT	57.463	25.926	0.00	1.87	34.86	1.82
590	591	9.447157	TCATGCATATCATCGAAAATTATACCA	57.553	29.630	0.00	0.00	31.79	3.25
701	702	5.843673	TGGCACAAATTACAAAAGAGACA	57.156	34.783	0.00	0.00	31.92	3.41
702	703	6.214191	TGGCACAAATTACAAAAGAGACAA	57.786	33.333	0.00	0.00	31.92	3.18
703	704	6.634805	TGGCACAAATTACAAAAGAGACAAA	58.365	32.000	0.00	0.00	31.92	2.83
704	705	7.271511	TGGCACAAATTACAAAAGAGACAAAT	58.728	30.769	0.00	0.00	31.92	2.32
705	706	8.417106	TGGCACAAATTACAAAAGAGACAAATA	58.583	29.630	0.00	0.00	31.92	1.40
706	707	9.255304	GGCACAAATTACAAAAGAGACAAATAA	57.745	29.630	0.00	0.00	0.00	1.40
715	716	7.584987	ACAAAAGAGACAAATAAATCAGGACG	58.415	34.615	0.00	0.00	0.00	4.79
716	717	6.743575	AAAGAGACAAATAAATCAGGACGG	57.256	37.500	0.00	0.00	0.00	4.79
717	718	5.677319	AGAGACAAATAAATCAGGACGGA	57.323	39.130	0.00	0.00	0.00	4.69
718	719	5.665459	AGAGACAAATAAATCAGGACGGAG	58.335	41.667	0.00	0.00	0.00	4.63
719	720	4.770795	AGACAAATAAATCAGGACGGAGG	58.229	43.478	0.00	0.00	0.00	4.30
720	721	4.225267	AGACAAATAAATCAGGACGGAGGT	59.775	41.667	0.00	0.00	0.00	3.85
721	722	4.918588	ACAAATAAATCAGGACGGAGGTT	58.081	39.130	0.00	0.00	0.00	3.50
722	723	5.321927	ACAAATAAATCAGGACGGAGGTTT	58.678	37.500	0.00	0.00	0.00	3.27
723	724	5.773176	ACAAATAAATCAGGACGGAGGTTTT	59.227	36.000	0.00	0.00	0.00	2.43
724	725	6.266786	ACAAATAAATCAGGACGGAGGTTTTT	59.733	34.615	0.00	0.00	0.00	1.94
811	813	4.451150	GCTCATCCGACGGCCACA	62.451	66.667	9.66	0.00	0.00	4.17
835	837	4.380843	TCCTTGAAGGCTGAATTGGTTA	57.619	40.909	6.30	0.00	34.61	2.85
852	854	4.584874	TGGTTAATCATCGGAAGCAGAAA	58.415	39.130	0.00	0.00	0.00	2.52
859	861	0.034896	TCGGAAGCAGAAACAGGGAC	59.965	55.000	0.00	0.00	0.00	4.46
863	865	0.472471	AAGCAGAAACAGGGACCGAA	59.528	50.000	0.00	0.00	0.00	4.30
868	870	1.067071	AGAAACAGGGACCGAACGATC	60.067	52.381	0.00	0.00	0.00	3.69
908	910	1.663074	CTATCGCTCGCTGCTTCCC	60.663	63.158	0.00	0.00	40.11	3.97
1106	1109	3.077556	AATCTCACCCGAGCCGCT	61.078	61.111	0.00	0.00	39.30	5.52
1131	1134	4.287781	TCACCGCCTCGTTCGCAA	62.288	61.111	0.00	0.00	0.00	4.85
1169	1173	3.496130	CCTTTTGCTGATCGCGATTCTAT	59.504	43.478	24.55	0.00	43.27	1.98
1187	1191	4.740268	TCTATTGTTGTTATGTCGAGCGT	58.260	39.130	0.00	0.00	0.00	5.07
1213	1217	2.308866	GGTTTTGAGGGAGATTGAGGGA	59.691	50.000	0.00	0.00	0.00	4.20
1257	1261	0.107897	TTGGCGCATCTGTTCCGTAT	60.108	50.000	10.83	0.00	0.00	3.06
1273	1277	7.483307	TGTTCCGTATGTACAGATAAACCTAC	58.517	38.462	0.33	0.00	0.00	3.18
1286	1290	7.607991	ACAGATAAACCTACCTGAATCAACTTG	59.392	37.037	0.00	0.00	0.00	3.16
1287	1291	7.607991	CAGATAAACCTACCTGAATCAACTTGT	59.392	37.037	0.00	0.00	0.00	3.16
1303	1307	4.963318	ACTTGTGATCTGTTCCTTCTCA	57.037	40.909	0.00	0.00	0.00	3.27
1305	1309	5.486526	ACTTGTGATCTGTTCCTTCTCATC	58.513	41.667	0.00	0.00	0.00	2.92
1324	1328	5.019470	TCATCTAGAGACTTCAGCTTCCAA	58.981	41.667	0.00	0.00	0.00	3.53
1448	1452	8.911918	TTCAGTAGCTTGGTCAAATTTACTAA	57.088	30.769	0.00	0.00	0.00	2.24
1476	1634	5.121221	AGGTTTTGTGCTTACTACAATGC	57.879	39.130	0.00	0.00	37.81	3.56
1550	1708	2.092323	GGAGGGTTTCTGGTATGTTGC	58.908	52.381	0.00	0.00	0.00	4.17
1554	1712	2.488153	GGGTTTCTGGTATGTTGCACTC	59.512	50.000	0.00	0.00	0.00	3.51
1562	1720	5.705441	TCTGGTATGTTGCACTCTAAAAAGG	59.295	40.000	0.00	0.00	0.00	3.11
1570	1728	2.218603	CACTCTAAAAAGGGTGCGTGT	58.781	47.619	0.00	0.00	0.00	4.49
1619	1784	3.057739	CGTGTTTGTCGAGAACTGTATCG	59.942	47.826	11.55	8.54	39.86	2.92
1638	1803	3.926616	TCGAGGTCTCTTGTTTTGATCC	58.073	45.455	0.00	0.00	0.00	3.36
1686	1851	6.542005	TGTTTGTGTGATGTCTTACAGTGATT	59.458	34.615	0.00	0.00	0.00	2.57
1688	1853	5.610398	TGTGTGATGTCTTACAGTGATTGT	58.390	37.500	0.00	0.00	43.96	2.71
1689	1854	5.466393	TGTGTGATGTCTTACAGTGATTGTG	59.534	40.000	0.00	0.00	41.10	3.33
1693	1858	7.545615	TGTGATGTCTTACAGTGATTGTGTATC	59.454	37.037	0.00	0.00	41.10	2.24
1703	1868	6.203530	ACAGTGATTGTGTATCTGACAAGTTG	59.796	38.462	0.00	0.00	40.66	3.16
1709	1874	4.202357	TGTGTATCTGACAAGTTGGAGCTT	60.202	41.667	7.96	0.00	40.66	3.74
1763	1928	8.736751	TTCGTTTTGAATAACTTTATGGAAGC	57.263	30.769	0.00	0.00	39.04	3.86
1767	1932	9.860898	GTTTTGAATAACTTTATGGAAGCTCAT	57.139	29.630	0.00	0.00	39.04	2.90
1784	1949	9.007901	GGAAGCTCATTATCAATAAATAGCACT	57.992	33.333	15.99	7.59	36.93	4.40
1826	1991	3.963383	ACTAAACCAAAAGTGAGCACG	57.037	42.857	0.00	0.00	36.20	5.34
1920	2092	4.194640	AGCATGTAGAGAACGATGCAATT	58.805	39.130	0.00	0.00	41.31	2.32
1986	2165	7.120726	GCACACTCAGGTATTTTGGTACTAATT	59.879	37.037	0.00	0.00	0.00	1.40
2164	2343	3.173668	TCACTTACGTGTTGCTTCACT	57.826	42.857	0.00	1.71	41.89	3.41
2165	2344	4.310357	TCACTTACGTGTTGCTTCACTA	57.690	40.909	0.00	1.00	41.89	2.74
2323	2506	0.257039	TGGAGACCGTACTAGTCCCC	59.743	60.000	0.00	7.63	34.67	4.81
2413	2608	2.361757	TCAATGTTTGGTTGTGCTCTGG	59.638	45.455	0.00	0.00	0.00	3.86
2466	2661	8.940397	TCCCATTTCATTTCTCTTCTACTTTT	57.060	30.769	0.00	0.00	0.00	2.27
2508	2704	8.207521	AGCTGTATTCTTGCTCTAAATTTCTC	57.792	34.615	0.00	0.00	30.41	2.87
2658	2857	0.389025	GGCTGTTTTGTTGTCCCCTG	59.611	55.000	0.00	0.00	0.00	4.45
2741	2943	3.907221	AGAATTCCCAGATGGTGAATGG	58.093	45.455	13.14	0.00	36.17	3.16
2783	2985	6.763355	AGCAGTATTGTATAGGAGGTTCATG	58.237	40.000	0.00	0.00	0.00	3.07
2785	2987	6.647067	GCAGTATTGTATAGGAGGTTCATGTC	59.353	42.308	0.00	0.00	0.00	3.06
2853	3055	0.250553	TACGGACAAGCACCTTTGGG	60.251	55.000	0.00	0.00	38.88	4.12
2896	3098	7.615403	TGATGTTCAAGCTTAGTCTCAGTAAT	58.385	34.615	0.00	0.00	0.00	1.89
2926	3128	3.790089	AGTAGTTGAAACCCTGGGAAG	57.210	47.619	22.23	0.00	0.00	3.46
3001	3203	4.022068	GGATTGCAAAATCTCACCTGAACA	60.022	41.667	1.71	0.00	0.00	3.18
3003	3205	4.771590	TGCAAAATCTCACCTGAACATC	57.228	40.909	0.00	0.00	0.00	3.06
3087	3290	3.933332	GTCACCCTCAACGGAATCTAAAG	59.067	47.826	0.00	0.00	33.16	1.85
3108	3311	5.222278	AGGGAGTATTAGAAACCTGGAGA	57.778	43.478	0.00	0.00	0.00	3.71
3124	3327	1.387539	GAGAAAGGAGGAATGCTGGC	58.612	55.000	0.00	0.00	0.00	4.85
3126	3329	1.379044	AAAGGAGGAATGCTGGCCG	60.379	57.895	0.00	0.00	0.00	6.13
3139	3342	3.810896	GGCCGGCTTTAAGCACCG	61.811	66.667	28.56	13.21	44.75	4.94
3176	3379	3.817647	GACCTGAGAGCTTTGAACATGTT	59.182	43.478	11.78	11.78	0.00	2.71
3196	3400	1.600636	TGTACGGGTCGTCGGTCTT	60.601	57.895	0.00	0.00	41.54	3.01
3258	3462	4.293415	GAGCCAACATGAGTGTTCAAAAG	58.707	43.478	0.00	0.00	45.14	2.27
3259	3463	3.953612	AGCCAACATGAGTGTTCAAAAGA	59.046	39.130	0.00	0.00	45.14	2.52
3264	3468	3.256631	ACATGAGTGTTCAAAAGATGGGC	59.743	43.478	0.00	0.00	36.78	5.36
3265	3469	1.879380	TGAGTGTTCAAAAGATGGGCG	59.121	47.619	0.00	0.00	0.00	6.13
3266	3470	1.880027	GAGTGTTCAAAAGATGGGCGT	59.120	47.619	0.00	0.00	0.00	5.68
3267	3471	3.071479	GAGTGTTCAAAAGATGGGCGTA	58.929	45.455	0.00	0.00	0.00	4.42
3268	3472	2.812011	AGTGTTCAAAAGATGGGCGTAC	59.188	45.455	0.00	0.00	0.00	3.67
3269	3473	2.095415	GTGTTCAAAAGATGGGCGTACC	60.095	50.000	0.00	0.00	40.81	3.34
3316	3520	3.512033	AGAGTTTCTCGTCCATGTAGC	57.488	47.619	0.00	0.00	35.36	3.58
3396	3601	2.503331	TGCGGTGACATTTCAGATTGT	58.497	42.857	0.00	0.00	30.10	2.71
3399	3604	4.517075	TGCGGTGACATTTCAGATTGTTTA	59.483	37.500	0.00	0.00	30.10	2.01
3400	3605	5.009110	TGCGGTGACATTTCAGATTGTTTAA	59.991	36.000	0.00	0.00	30.10	1.52
3402	3607	6.586082	GCGGTGACATTTCAGATTGTTTAATT	59.414	34.615	0.00	0.00	30.10	1.40
3403	3608	7.116233	GCGGTGACATTTCAGATTGTTTAATTT	59.884	33.333	0.00	0.00	30.10	1.82
3404	3609	8.977505	CGGTGACATTTCAGATTGTTTAATTTT	58.022	29.630	0.00	0.00	30.10	1.82
3426	3631	3.147595	CCCCTCGCAGACGGATCA	61.148	66.667	0.00	0.00	40.63	2.92
3483	3689	0.385223	CGCTCTGCAACTGAACAAGC	60.385	55.000	0.00	0.00	0.00	4.01
3527	3733	4.459199	GGGTGGCACCATCCATTT	57.541	55.556	35.69	0.00	46.13	2.32
3528	3734	1.899617	GGGTGGCACCATCCATTTG	59.100	57.895	35.69	0.00	46.13	2.32
3529	3735	1.218854	GGTGGCACCATCCATTTGC	59.781	57.895	31.26	0.00	38.42	3.68
3530	3736	1.543065	GGTGGCACCATCCATTTGCA	61.543	55.000	31.26	0.00	38.42	4.08
3531	3737	0.321021	GTGGCACCATCCATTTGCAA	59.679	50.000	6.29	0.00	38.57	4.08
3588	3794	1.226547	GTCGAGAGAAGCGAGGCAG	60.227	63.158	0.00	0.00	45.01	4.85
3636	3843	1.115930	ATCCCGATTCCACTCCGAGG	61.116	60.000	0.00	0.00	0.00	4.63
3686	3893	4.821589	CGCCGCCCTCTTCACTCC	62.822	72.222	0.00	0.00	0.00	3.85
3696	3903	3.649277	CTTCACTCCGGACGCTGGG	62.649	68.421	0.00	0.00	0.00	4.45
3697	3904	4.988716	TCACTCCGGACGCTGGGT	62.989	66.667	0.00	0.00	0.00	4.51
3698	3905	4.436998	CACTCCGGACGCTGGGTC	62.437	72.222	15.72	15.72	45.31	4.46
3721	3928	2.359169	CCTGCTCCCTCGCAACCTA	61.359	63.158	0.00	0.00	39.80	3.08
3858	4102	1.405661	GGGGTGAGAGCCGTTAAGAAG	60.406	57.143	0.00	0.00	36.39	2.85
3871	4115	4.563993	CCGTTAAGAAGTGTTACCATCCCA	60.564	45.833	0.00	0.00	0.00	4.37
4015	4274	1.587933	GCTAGATAGACGGGGCCTCG	61.588	65.000	27.07	27.07	0.00	4.63

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	0.891904	GCCAAAGGGAGGCGTTGTTA	60.892	55.000	0.00	0.00	43.15	2.41
3	4	2.597510	GCCAAAGGGAGGCGTTGT	60.598	61.111	0.00	0.00	43.15	3.32
9	10	1.076485	CATCAGGGCCAAAGGGAGG	60.076	63.158	6.18	0.00	35.59	4.30
10	11	1.076485	CCATCAGGGCCAAAGGGAG	60.076	63.158	6.18	0.00	35.59	4.30
11	12	3.099171	CCATCAGGGCCAAAGGGA	58.901	61.111	6.18	0.00	35.59	4.20
30	31	2.112297	TTCCAGGTGTTCCGGCAC	59.888	61.111	0.00	0.00	39.05	5.01
31	32	2.112297	GTTCCAGGTGTTCCGGCA	59.888	61.111	0.00	0.00	39.05	5.69
32	33	2.671963	GGTTCCAGGTGTTCCGGC	60.672	66.667	0.00	0.00	39.05	6.13
33	34	0.466555	TTTGGTTCCAGGTGTTCCGG	60.467	55.000	0.00	0.00	39.05	5.14
34	35	0.951558	CTTTGGTTCCAGGTGTTCCG	59.048	55.000	0.00	0.00	39.05	4.30
35	36	0.673985	GCTTTGGTTCCAGGTGTTCC	59.326	55.000	0.00	0.00	0.00	3.62
36	37	1.067060	GTGCTTTGGTTCCAGGTGTTC	59.933	52.381	0.00	0.00	0.00	3.18
37	38	1.111277	GTGCTTTGGTTCCAGGTGTT	58.889	50.000	0.00	0.00	0.00	3.32
38	39	0.258774	AGTGCTTTGGTTCCAGGTGT	59.741	50.000	0.00	0.00	0.00	4.16
39	40	1.402787	AAGTGCTTTGGTTCCAGGTG	58.597	50.000	0.00	0.00	0.00	4.00
40	41	2.031870	GAAAGTGCTTTGGTTCCAGGT	58.968	47.619	1.51	0.00	32.11	4.00
41	42	1.341209	GGAAAGTGCTTTGGTTCCAGG	59.659	52.381	1.51	0.00	39.51	4.45
42	43	1.341209	GGGAAAGTGCTTTGGTTCCAG	59.659	52.381	1.51	0.00	41.17	3.86
43	44	1.408969	GGGAAAGTGCTTTGGTTCCA	58.591	50.000	1.51	0.00	41.17	3.53
44	45	0.313987	CGGGAAAGTGCTTTGGTTCC	59.686	55.000	1.51	0.00	39.08	3.62
45	46	1.314730	TCGGGAAAGTGCTTTGGTTC	58.685	50.000	1.51	0.00	32.11	3.62
46	47	1.995376	ATCGGGAAAGTGCTTTGGTT	58.005	45.000	1.51	0.00	32.11	3.67
47	48	2.433436	GTATCGGGAAAGTGCTTTGGT	58.567	47.619	1.51	0.00	32.11	3.67
48	49	1.396996	CGTATCGGGAAAGTGCTTTGG	59.603	52.381	1.51	0.00	32.11	3.28
49	50	1.396996	CCGTATCGGGAAAGTGCTTTG	59.603	52.381	1.51	0.00	44.15	2.77
50	51	1.734163	CCGTATCGGGAAAGTGCTTT	58.266	50.000	0.00	0.00	44.15	3.51
51	52	3.453559	CCGTATCGGGAAAGTGCTT	57.546	52.632	0.00	0.00	44.15	3.91
62	63	2.106332	GTCCACCAGCCCGTATCG	59.894	66.667	0.00	0.00	0.00	2.92
63	64	0.743345	GTTGTCCACCAGCCCGTATC	60.743	60.000	0.00	0.00	0.00	2.24
64	65	1.298667	GTTGTCCACCAGCCCGTAT	59.701	57.895	0.00	0.00	0.00	3.06
65	66	2.745037	GTTGTCCACCAGCCCGTA	59.255	61.111	0.00	0.00	0.00	4.02
66	67	4.619227	CGTTGTCCACCAGCCCGT	62.619	66.667	0.00	0.00	0.00	5.28
67	68	3.229156	TACGTTGTCCACCAGCCCG	62.229	63.158	0.00	0.00	0.00	6.13
68	69	1.670083	GTACGTTGTCCACCAGCCC	60.670	63.158	0.00	0.00	0.00	5.19
69	70	0.533308	TTGTACGTTGTCCACCAGCC	60.533	55.000	0.00	0.00	0.00	4.85
70	71	1.519408	ATTGTACGTTGTCCACCAGC	58.481	50.000	0.00	0.00	0.00	4.85
71	72	3.122278	CGTTATTGTACGTTGTCCACCAG	59.878	47.826	0.00	0.00	36.80	4.00
72	73	3.058450	CGTTATTGTACGTTGTCCACCA	58.942	45.455	0.00	0.00	36.80	4.17
73	74	3.710437	CGTTATTGTACGTTGTCCACC	57.290	47.619	0.00	0.00	36.80	4.61
82	83	3.486108	GCCTGATCTGACGTTATTGTACG	59.514	47.826	0.38	0.00	46.52	3.67
83	84	4.430007	TGCCTGATCTGACGTTATTGTAC	58.570	43.478	0.38	0.00	0.00	2.90
84	85	4.729227	TGCCTGATCTGACGTTATTGTA	57.271	40.909	0.38	0.00	0.00	2.41
85	86	3.610040	TGCCTGATCTGACGTTATTGT	57.390	42.857	0.38	0.00	0.00	2.71
86	87	4.122046	TCATGCCTGATCTGACGTTATTG	58.878	43.478	0.38	0.00	0.00	1.90
87	88	4.141846	ACTCATGCCTGATCTGACGTTATT	60.142	41.667	0.38	0.00	0.00	1.40
88	89	3.386078	ACTCATGCCTGATCTGACGTTAT	59.614	43.478	0.38	0.00	0.00	1.89
89	90	2.760650	ACTCATGCCTGATCTGACGTTA	59.239	45.455	0.38	0.00	0.00	3.18
90	91	1.552337	ACTCATGCCTGATCTGACGTT	59.448	47.619	0.38	0.00	0.00	3.99
91	92	1.189752	ACTCATGCCTGATCTGACGT	58.810	50.000	0.38	0.00	0.00	4.34
92	93	2.288091	CCTACTCATGCCTGATCTGACG	60.288	54.545	0.38	0.00	0.00	4.35
93	94	2.961741	TCCTACTCATGCCTGATCTGAC	59.038	50.000	0.38	0.00	0.00	3.51
94	95	2.961741	GTCCTACTCATGCCTGATCTGA	59.038	50.000	0.38	0.00	0.00	3.27
95	96	2.288091	CGTCCTACTCATGCCTGATCTG	60.288	54.545	0.00	0.00	0.00	2.90
96	97	1.959985	CGTCCTACTCATGCCTGATCT	59.040	52.381	0.00	0.00	0.00	2.75
97	98	1.957177	TCGTCCTACTCATGCCTGATC	59.043	52.381	0.00	0.00	0.00	2.92
98	99	1.683917	GTCGTCCTACTCATGCCTGAT	59.316	52.381	0.00	0.00	0.00	2.90
99	100	1.103803	GTCGTCCTACTCATGCCTGA	58.896	55.000	0.00	0.00	0.00	3.86
100	101	0.103208	GGTCGTCCTACTCATGCCTG	59.897	60.000	0.00	0.00	0.00	4.85
101	102	1.384989	CGGTCGTCCTACTCATGCCT	61.385	60.000	0.00	0.00	0.00	4.75
102	103	1.065928	CGGTCGTCCTACTCATGCC	59.934	63.158	0.00	0.00	0.00	4.40
103	104	0.248539	GACGGTCGTCCTACTCATGC	60.249	60.000	11.96	0.00	39.08	4.06
104	105	0.027716	CGACGGTCGTCCTACTCATG	59.972	60.000	21.68	0.00	41.76	3.07
105	106	2.391469	CGACGGTCGTCCTACTCAT	58.609	57.895	21.68	0.00	41.76	2.90
106	107	3.880591	CGACGGTCGTCCTACTCA	58.119	61.111	21.68	0.00	41.76	3.41
115	116	2.152699	GTGATGAGCACGACGGTCG	61.153	63.158	27.33	27.33	45.52	4.79
116	117	3.768632	GTGATGAGCACGACGGTC	58.231	61.111	0.00	0.00	42.75	4.79
124	125	0.253894	CATCCAGGGTGTGATGAGCA	59.746	55.000	0.00	0.00	40.64	4.26
125	126	0.465097	CCATCCAGGGTGTGATGAGC	60.465	60.000	0.00	0.00	40.64	4.26
126	127	0.914644	ACCATCCAGGGTGTGATGAG	59.085	55.000	0.00	0.00	43.89	2.90
127	128	1.281867	GAACCATCCAGGGTGTGATGA	59.718	52.381	0.00	0.00	37.53	2.92
128	129	1.755179	GAACCATCCAGGGTGTGATG	58.245	55.000	0.00	0.00	37.53	3.07
129	130	0.253044	CGAACCATCCAGGGTGTGAT	59.747	55.000	0.00	0.00	37.53	3.06
130	131	0.834261	TCGAACCATCCAGGGTGTGA	60.834	55.000	0.00	0.00	37.53	3.58
131	132	0.253044	ATCGAACCATCCAGGGTGTG	59.747	55.000	0.00	0.00	37.53	3.82
132	133	0.541863	GATCGAACCATCCAGGGTGT	59.458	55.000	0.00	0.00	37.53	4.16
133	134	0.833287	AGATCGAACCATCCAGGGTG	59.167	55.000	0.00	0.00	37.53	4.61
134	135	1.123928	GAGATCGAACCATCCAGGGT	58.876	55.000	0.00	0.00	43.33	4.34
135	136	1.123077	TGAGATCGAACCATCCAGGG	58.877	55.000	0.00	0.00	43.89	4.45
136	137	2.484417	CCTTGAGATCGAACCATCCAGG	60.484	54.545	0.00	0.00	45.67	4.45
137	138	2.484417	CCCTTGAGATCGAACCATCCAG	60.484	54.545	0.00	0.00	0.00	3.86
138	139	1.486310	CCCTTGAGATCGAACCATCCA	59.514	52.381	0.00	0.00	0.00	3.41
139	140	1.202698	CCCCTTGAGATCGAACCATCC	60.203	57.143	0.00	0.00	0.00	3.51
140	141	1.202698	CCCCCTTGAGATCGAACCATC	60.203	57.143	0.00	0.00	0.00	3.51
141	142	0.839946	CCCCCTTGAGATCGAACCAT	59.160	55.000	0.00	0.00	0.00	3.55
142	143	1.910580	GCCCCCTTGAGATCGAACCA	61.911	60.000	0.00	0.00	0.00	3.67
143	144	1.153147	GCCCCCTTGAGATCGAACC	60.153	63.158	0.00	0.00	0.00	3.62
144	145	0.462759	CAGCCCCCTTGAGATCGAAC	60.463	60.000	0.00	0.00	0.00	3.95
145	146	1.626356	CCAGCCCCCTTGAGATCGAA	61.626	60.000	0.00	0.00	0.00	3.71
146	147	2.066393	CCAGCCCCCTTGAGATCGA	61.066	63.158	0.00	0.00	0.00	3.59
147	148	2.507944	CCAGCCCCCTTGAGATCG	59.492	66.667	0.00	0.00	0.00	3.69
148	149	1.056700	TAGCCAGCCCCCTTGAGATC	61.057	60.000	0.00	0.00	0.00	2.75
149	150	0.402566	ATAGCCAGCCCCCTTGAGAT	60.403	55.000	0.00	0.00	0.00	2.75
150	151	1.004758	ATAGCCAGCCCCCTTGAGA	59.995	57.895	0.00	0.00	0.00	3.27
151	152	1.150081	CATAGCCAGCCCCCTTGAG	59.850	63.158	0.00	0.00	0.00	3.02
152	153	2.386100	CCATAGCCAGCCCCCTTGA	61.386	63.158	0.00	0.00	0.00	3.02
153	154	2.196776	CCATAGCCAGCCCCCTTG	59.803	66.667	0.00	0.00	0.00	3.61
154	155	2.287194	ACCATAGCCAGCCCCCTT	60.287	61.111	0.00	0.00	0.00	3.95
155	156	3.099170	CACCATAGCCAGCCCCCT	61.099	66.667	0.00	0.00	0.00	4.79
156	157	4.902645	GCACCATAGCCAGCCCCC	62.903	72.222	0.00	0.00	0.00	5.40
157	158	4.127744	TGCACCATAGCCAGCCCC	62.128	66.667	0.00	0.00	0.00	5.80
158	159	2.830370	GTGCACCATAGCCAGCCC	60.830	66.667	5.22	0.00	0.00	5.19
159	160	2.830370	GGTGCACCATAGCCAGCC	60.830	66.667	31.23	0.00	35.64	4.85
160	161	1.660560	CTTGGTGCACCATAGCCAGC	61.661	60.000	37.97	8.24	46.97	4.85
161	162	0.322816	ACTTGGTGCACCATAGCCAG	60.323	55.000	37.97	31.23	46.97	4.85
162	163	0.112218	AACTTGGTGCACCATAGCCA	59.888	50.000	37.97	22.24	46.97	4.75
163	164	1.256812	AAACTTGGTGCACCATAGCC	58.743	50.000	37.97	10.92	46.97	3.93
164	165	2.610232	CCAAAACTTGGTGCACCATAGC	60.610	50.000	37.97	11.40	46.97	2.97
165	166	3.302365	CCAAAACTTGGTGCACCATAG	57.698	47.619	37.97	33.28	46.97	2.23
176	177	0.673437	ACATCACCGCCCAAAACTTG	59.327	50.000	0.00	0.00	0.00	3.16
177	178	0.958822	GACATCACCGCCCAAAACTT	59.041	50.000	0.00	0.00	0.00	2.66
178	179	0.179004	TGACATCACCGCCCAAAACT	60.179	50.000	0.00	0.00	0.00	2.66
179	180	0.887933	ATGACATCACCGCCCAAAAC	59.112	50.000	0.00	0.00	0.00	2.43
180	181	2.290641	ACTATGACATCACCGCCCAAAA	60.291	45.455	0.00	0.00	0.00	2.44
181	182	1.280710	ACTATGACATCACCGCCCAAA	59.719	47.619	0.00	0.00	0.00	3.28
182	183	0.908910	ACTATGACATCACCGCCCAA	59.091	50.000	0.00	0.00	0.00	4.12
183	184	0.464036	GACTATGACATCACCGCCCA	59.536	55.000	0.00	0.00	0.00	5.36
184	185	0.753262	AGACTATGACATCACCGCCC	59.247	55.000	0.00	0.00	0.00	6.13
185	186	2.101582	AGAAGACTATGACATCACCGCC	59.898	50.000	0.00	0.00	0.00	6.13
186	187	3.444703	AGAAGACTATGACATCACCGC	57.555	47.619	0.00	0.00	0.00	5.68
187	188	6.567687	ATCTAGAAGACTATGACATCACCG	57.432	41.667	0.00	0.00	0.00	4.94
188	189	7.151308	CCAATCTAGAAGACTATGACATCACC	58.849	42.308	0.00	0.00	0.00	4.02
189	190	7.151308	CCCAATCTAGAAGACTATGACATCAC	58.849	42.308	0.00	0.00	0.00	3.06
190	191	6.239430	GCCCAATCTAGAAGACTATGACATCA	60.239	42.308	0.00	0.00	0.00	3.07
191	192	6.162777	GCCCAATCTAGAAGACTATGACATC	58.837	44.000	0.00	0.00	0.00	3.06
192	193	5.012561	GGCCCAATCTAGAAGACTATGACAT	59.987	44.000	0.00	0.00	0.00	3.06
193	194	4.345257	GGCCCAATCTAGAAGACTATGACA	59.655	45.833	0.00	0.00	0.00	3.58
194	195	4.262678	GGGCCCAATCTAGAAGACTATGAC	60.263	50.000	19.95	0.00	0.00	3.06
195	196	3.904339	GGGCCCAATCTAGAAGACTATGA	59.096	47.826	19.95	0.00	0.00	2.15
196	197	3.008485	GGGGCCCAATCTAGAAGACTATG	59.992	52.174	26.86	0.00	0.00	2.23
197	198	3.116159	AGGGGCCCAATCTAGAAGACTAT	60.116	47.826	27.72	0.00	0.00	2.12
198	199	2.250273	AGGGGCCCAATCTAGAAGACTA	59.750	50.000	27.72	0.00	0.00	2.59
199	200	1.010170	AGGGGCCCAATCTAGAAGACT	59.990	52.381	27.72	3.09	0.00	3.24
200	201	1.418264	GAGGGGCCCAATCTAGAAGAC	59.582	57.143	27.72	0.20	0.00	3.01
201	202	1.695989	GGAGGGGCCCAATCTAGAAGA	60.696	57.143	27.72	0.00	0.00	2.87
202	203	0.767998	GGAGGGGCCCAATCTAGAAG	59.232	60.000	27.72	0.00	0.00	2.85
203	204	2.945718	GGAGGGGCCCAATCTAGAA	58.054	57.895	27.72	0.00	0.00	2.10
204	205	4.750289	GGAGGGGCCCAATCTAGA	57.250	61.111	27.72	0.00	0.00	2.43
213	214	4.847367	CTGCAATGGGGAGGGGCC	62.847	72.222	0.00	0.00	0.00	5.80
218	219	4.809496	AGCCGCTGCAATGGGGAG	62.809	66.667	12.62	0.00	41.89	4.30
221	222	1.952102	AATTCAGCCGCTGCAATGGG	61.952	55.000	15.98	0.00	41.13	4.00
222	223	0.804544	CAATTCAGCCGCTGCAATGG	60.805	55.000	15.98	9.84	41.13	3.16
223	224	0.804544	CCAATTCAGCCGCTGCAATG	60.805	55.000	15.98	8.29	41.13	2.82
224	225	0.966875	TCCAATTCAGCCGCTGCAAT	60.967	50.000	15.98	12.66	41.13	3.56
225	226	0.966875	ATCCAATTCAGCCGCTGCAA	60.967	50.000	15.98	10.98	41.13	4.08
226	227	0.107263	TATCCAATTCAGCCGCTGCA	60.107	50.000	15.98	5.16	41.13	4.41
227	228	1.002033	CTTATCCAATTCAGCCGCTGC	60.002	52.381	15.98	0.00	37.95	5.25
228	229	1.002033	GCTTATCCAATTCAGCCGCTG	60.002	52.381	14.62	14.62	0.00	5.18
229	230	1.312815	GCTTATCCAATTCAGCCGCT	58.687	50.000	0.00	0.00	0.00	5.52
230	231	0.040958	CGCTTATCCAATTCAGCCGC	60.041	55.000	0.00	0.00	0.00	6.53
231	232	0.588252	CCGCTTATCCAATTCAGCCG	59.412	55.000	0.00	0.00	0.00	5.52
232	233	1.680338	ACCGCTTATCCAATTCAGCC	58.320	50.000	0.00	0.00	0.00	4.85
233	234	3.003378	GGTTACCGCTTATCCAATTCAGC	59.997	47.826	0.00	0.00	0.00	4.26
234	235	3.564225	GGGTTACCGCTTATCCAATTCAG	59.436	47.826	0.00	0.00	0.00	3.02
235	236	3.201266	AGGGTTACCGCTTATCCAATTCA	59.799	43.478	0.00	0.00	43.47	2.57
236	237	3.816994	AGGGTTACCGCTTATCCAATTC	58.183	45.455	0.00	0.00	43.47	2.17
237	238	3.945640	AGGGTTACCGCTTATCCAATT	57.054	42.857	0.00	0.00	43.47	2.32
238	239	5.376756	TTTAGGGTTACCGCTTATCCAAT	57.623	39.130	0.00	0.00	43.47	3.16
239	240	4.840716	TTTAGGGTTACCGCTTATCCAA	57.159	40.909	0.00	0.00	43.47	3.53
240	241	4.840716	TTTTAGGGTTACCGCTTATCCA	57.159	40.909	0.00	0.00	43.47	3.41
259	260	3.767131	AGGTGGGCGCAACTATTATTTTT	59.233	39.130	21.29	0.00	0.00	1.94
260	261	3.361786	AGGTGGGCGCAACTATTATTTT	58.638	40.909	21.29	0.00	0.00	1.82
261	262	3.012934	AGGTGGGCGCAACTATTATTT	57.987	42.857	21.29	0.00	0.00	1.40
262	263	2.729028	AGGTGGGCGCAACTATTATT	57.271	45.000	21.29	0.00	0.00	1.40
263	264	2.729028	AAGGTGGGCGCAACTATTAT	57.271	45.000	22.94	2.92	0.00	1.28
264	265	2.361789	GAAAGGTGGGCGCAACTATTA	58.638	47.619	22.94	0.00	0.00	0.98
265	266	1.173913	GAAAGGTGGGCGCAACTATT	58.826	50.000	22.94	17.20	0.00	1.73
266	267	1.024579	CGAAAGGTGGGCGCAACTAT	61.025	55.000	22.94	9.56	0.00	2.12
267	268	1.669760	CGAAAGGTGGGCGCAACTA	60.670	57.895	22.94	0.00	0.00	2.24
268	269	2.978010	CGAAAGGTGGGCGCAACT	60.978	61.111	16.79	16.79	0.00	3.16
269	270	3.284449	ACGAAAGGTGGGCGCAAC	61.284	61.111	11.52	11.52	0.00	4.17
270	271	3.283684	CACGAAAGGTGGGCGCAA	61.284	61.111	10.83	0.00	43.16	4.85
278	279	2.525105	AATTATGGGGCACGAAAGGT	57.475	45.000	0.00	0.00	0.00	3.50
279	280	4.503741	CATAATTATGGGGCACGAAAGG	57.496	45.455	16.41	0.00	0.00	3.11
294	295	9.541884	AACCACTATTAAAACCTGTCCATAATT	57.458	29.630	0.00	0.00	0.00	1.40
295	296	9.541884	AAACCACTATTAAAACCTGTCCATAAT	57.458	29.630	0.00	0.00	0.00	1.28
296	297	8.798402	CAAACCACTATTAAAACCTGTCCATAA	58.202	33.333	0.00	0.00	0.00	1.90
297	298	7.094118	GCAAACCACTATTAAAACCTGTCCATA	60.094	37.037	0.00	0.00	0.00	2.74
298	299	6.295067	GCAAACCACTATTAAAACCTGTCCAT	60.295	38.462	0.00	0.00	0.00	3.41
299	300	5.010213	GCAAACCACTATTAAAACCTGTCCA	59.990	40.000	0.00	0.00	0.00	4.02
300	301	5.010213	TGCAAACCACTATTAAAACCTGTCC	59.990	40.000	0.00	0.00	0.00	4.02
301	302	6.079424	TGCAAACCACTATTAAAACCTGTC	57.921	37.500	0.00	0.00	0.00	3.51
302	303	6.454795	CATGCAAACCACTATTAAAACCTGT	58.545	36.000	0.00	0.00	0.00	4.00
303	304	5.348451	GCATGCAAACCACTATTAAAACCTG	59.652	40.000	14.21	0.00	0.00	4.00
304	305	5.478407	GCATGCAAACCACTATTAAAACCT	58.522	37.500	14.21	0.00	0.00	3.50
305	306	4.629634	GGCATGCAAACCACTATTAAAACC	59.370	41.667	21.36	0.00	0.00	3.27
306	307	5.233988	TGGCATGCAAACCACTATTAAAAC	58.766	37.500	21.36	0.00	0.00	2.43
307	308	5.474578	TGGCATGCAAACCACTATTAAAA	57.525	34.783	21.36	0.00	0.00	1.52
308	309	5.046735	ACATGGCATGCAAACCACTATTAAA	60.047	36.000	26.70	0.00	39.19	1.52
309	310	4.465660	ACATGGCATGCAAACCACTATTAA	59.534	37.500	26.70	0.00	39.19	1.40
310	311	4.022603	ACATGGCATGCAAACCACTATTA	58.977	39.130	26.70	0.00	39.19	0.98
311	312	2.833338	ACATGGCATGCAAACCACTATT	59.167	40.909	26.70	0.00	39.19	1.73
312	313	2.459644	ACATGGCATGCAAACCACTAT	58.540	42.857	26.70	0.52	39.19	2.12
313	314	1.921982	ACATGGCATGCAAACCACTA	58.078	45.000	26.70	0.00	39.19	2.74
314	315	1.050204	AACATGGCATGCAAACCACT	58.950	45.000	26.70	2.08	39.19	4.00
315	316	1.881591	AAACATGGCATGCAAACCAC	58.118	45.000	26.70	0.64	39.19	4.16
316	317	2.634815	AAAACATGGCATGCAAACCA	57.365	40.000	26.70	12.95	41.06	3.67
335	336	9.463902	TTGATTAATCCCCTCAATACGTAAAAA	57.536	29.630	12.90	0.00	0.00	1.94
336	337	9.635404	ATTGATTAATCCCCTCAATACGTAAAA	57.365	29.630	12.90	0.00	37.73	1.52
337	338	9.062524	CATTGATTAATCCCCTCAATACGTAAA	57.937	33.333	12.90	0.00	37.48	2.01
338	339	7.663905	CCATTGATTAATCCCCTCAATACGTAA	59.336	37.037	12.90	0.00	37.48	3.18
339	340	7.165485	CCATTGATTAATCCCCTCAATACGTA	58.835	38.462	12.90	0.00	37.48	3.57
340	341	6.003950	CCATTGATTAATCCCCTCAATACGT	58.996	40.000	12.90	0.00	37.48	3.57
341	342	5.106157	GCCATTGATTAATCCCCTCAATACG	60.106	44.000	12.90	2.83	37.48	3.06
342	343	5.774690	TGCCATTGATTAATCCCCTCAATAC	59.225	40.000	12.90	4.16	37.48	1.89
343	344	5.963092	TGCCATTGATTAATCCCCTCAATA	58.037	37.500	12.90	0.00	37.48	1.90
344	345	4.818447	TGCCATTGATTAATCCCCTCAAT	58.182	39.130	12.90	4.39	39.55	2.57
345	346	4.262891	TGCCATTGATTAATCCCCTCAA	57.737	40.909	12.90	2.06	33.75	3.02
346	347	3.969466	TGCCATTGATTAATCCCCTCA	57.031	42.857	12.90	2.39	0.00	3.86
347	348	5.129320	AGTTTTGCCATTGATTAATCCCCTC	59.871	40.000	12.90	0.00	0.00	4.30
348	349	5.032170	AGTTTTGCCATTGATTAATCCCCT	58.968	37.500	12.90	0.00	0.00	4.79
349	350	5.118286	CAGTTTTGCCATTGATTAATCCCC	58.882	41.667	12.90	0.00	0.00	4.81
350	351	5.118286	CCAGTTTTGCCATTGATTAATCCC	58.882	41.667	12.90	0.00	0.00	3.85
351	352	4.571984	GCCAGTTTTGCCATTGATTAATCC	59.428	41.667	12.90	0.00	0.00	3.01
352	353	5.177326	TGCCAGTTTTGCCATTGATTAATC	58.823	37.500	8.60	8.60	0.00	1.75
353	354	5.163281	TGCCAGTTTTGCCATTGATTAAT	57.837	34.783	0.00	0.00	0.00	1.40
354	355	4.613925	TGCCAGTTTTGCCATTGATTAA	57.386	36.364	0.00	0.00	0.00	1.40
355	356	4.505808	CATGCCAGTTTTGCCATTGATTA	58.494	39.130	0.00	0.00	0.00	1.75
356	357	3.340034	CATGCCAGTTTTGCCATTGATT	58.660	40.909	0.00	0.00	0.00	2.57
357	358	2.937873	GCATGCCAGTTTTGCCATTGAT	60.938	45.455	6.36	0.00	0.00	2.57
358	359	1.608542	GCATGCCAGTTTTGCCATTGA	60.609	47.619	6.36	0.00	0.00	2.57
359	360	0.800012	GCATGCCAGTTTTGCCATTG	59.200	50.000	6.36	0.00	0.00	2.82
360	361	0.671163	CGCATGCCAGTTTTGCCATT	60.671	50.000	13.15	0.00	32.76	3.16
361	362	1.079681	CGCATGCCAGTTTTGCCAT	60.080	52.632	13.15	0.00	32.76	4.40
362	363	1.534336	ATCGCATGCCAGTTTTGCCA	61.534	50.000	13.15	0.00	32.76	4.92
363	364	1.079875	CATCGCATGCCAGTTTTGCC	61.080	55.000	13.15	0.00	32.76	4.52
364	365	0.388907	ACATCGCATGCCAGTTTTGC	60.389	50.000	13.15	0.00	0.00	3.68
365	366	1.068402	TCACATCGCATGCCAGTTTTG	60.068	47.619	13.15	2.27	0.00	2.44
366	367	1.246649	TCACATCGCATGCCAGTTTT	58.753	45.000	13.15	0.00	0.00	2.43
367	368	1.200716	CTTCACATCGCATGCCAGTTT	59.799	47.619	13.15	0.00	0.00	2.66
368	369	0.806868	CTTCACATCGCATGCCAGTT	59.193	50.000	13.15	0.00	0.00	3.16
369	370	1.651240	GCTTCACATCGCATGCCAGT	61.651	55.000	13.15	5.24	0.00	4.00
370	371	1.063649	GCTTCACATCGCATGCCAG	59.936	57.895	13.15	4.54	0.00	4.85
371	372	1.377594	AGCTTCACATCGCATGCCA	60.378	52.632	13.15	0.00	0.00	4.92
372	373	1.063649	CAGCTTCACATCGCATGCC	59.936	57.895	13.15	0.00	0.00	4.40
373	374	0.448990	TTCAGCTTCACATCGCATGC	59.551	50.000	7.91	7.91	0.00	4.06
374	375	1.528400	CGTTCAGCTTCACATCGCATG	60.528	52.381	0.00	0.00	0.00	4.06
375	376	0.723414	CGTTCAGCTTCACATCGCAT	59.277	50.000	0.00	0.00	0.00	4.73
376	377	0.319469	TCGTTCAGCTTCACATCGCA	60.319	50.000	0.00	0.00	0.00	5.10
377	378	0.790207	TTCGTTCAGCTTCACATCGC	59.210	50.000	0.00	0.00	0.00	4.58
378	379	1.201855	GCTTCGTTCAGCTTCACATCG	60.202	52.381	0.00	0.00	36.79	3.84
379	380	1.201855	CGCTTCGTTCAGCTTCACATC	60.202	52.381	0.00	0.00	37.68	3.06
380	381	0.792640	CGCTTCGTTCAGCTTCACAT	59.207	50.000	0.00	0.00	37.68	3.21
381	382	1.221466	CCGCTTCGTTCAGCTTCACA	61.221	55.000	0.00	0.00	37.68	3.58
382	383	1.493311	CCGCTTCGTTCAGCTTCAC	59.507	57.895	0.00	0.00	37.68	3.18
383	384	1.667830	CCCGCTTCGTTCAGCTTCA	60.668	57.895	0.00	0.00	37.68	3.02
384	385	2.391389	CCCCGCTTCGTTCAGCTTC	61.391	63.158	0.00	0.00	37.68	3.86
385	386	2.358737	CCCCGCTTCGTTCAGCTT	60.359	61.111	0.00	0.00	37.68	3.74
386	387	3.626924	ACCCCGCTTCGTTCAGCT	61.627	61.111	3.22	0.00	37.68	4.24
387	388	3.423154	CACCCCGCTTCGTTCAGC	61.423	66.667	0.00	0.00	36.33	4.26
388	389	2.742372	CCACCCCGCTTCGTTCAG	60.742	66.667	0.00	0.00	0.00	3.02
389	390	4.323477	CCCACCCCGCTTCGTTCA	62.323	66.667	0.00	0.00	0.00	3.18
405	406	4.410400	CTTCCGCTCACCCCACCC	62.410	72.222	0.00	0.00	0.00	4.61
406	407	3.637273	ACTTCCGCTCACCCCACC	61.637	66.667	0.00	0.00	0.00	4.61
407	408	2.358737	CACTTCCGCTCACCCCAC	60.359	66.667	0.00	0.00	0.00	4.61
408	409	3.636231	CCACTTCCGCTCACCCCA	61.636	66.667	0.00	0.00	0.00	4.96
409	410	4.410400	CCCACTTCCGCTCACCCC	62.410	72.222	0.00	0.00	0.00	4.95
410	411	3.316573	CTCCCACTTCCGCTCACCC	62.317	68.421	0.00	0.00	0.00	4.61
411	412	2.266055	CTCCCACTTCCGCTCACC	59.734	66.667	0.00	0.00	0.00	4.02
412	413	2.266055	CCTCCCACTTCCGCTCAC	59.734	66.667	0.00	0.00	0.00	3.51
413	414	2.203788	ACCTCCCACTTCCGCTCA	60.204	61.111	0.00	0.00	0.00	4.26
414	415	2.579738	GACCTCCCACTTCCGCTC	59.420	66.667	0.00	0.00	0.00	5.03
415	416	3.382832	CGACCTCCCACTTCCGCT	61.383	66.667	0.00	0.00	0.00	5.52
416	417	2.939261	TTCGACCTCCCACTTCCGC	61.939	63.158	0.00	0.00	0.00	5.54
417	418	1.080025	GTTCGACCTCCCACTTCCG	60.080	63.158	0.00	0.00	0.00	4.30
418	419	0.395312	TTGTTCGACCTCCCACTTCC	59.605	55.000	0.00	0.00	0.00	3.46
419	420	2.249844	TTTGTTCGACCTCCCACTTC	57.750	50.000	0.00	0.00	0.00	3.01
420	421	2.092592	AGTTTTGTTCGACCTCCCACTT	60.093	45.455	0.00	0.00	0.00	3.16
421	422	1.489230	AGTTTTGTTCGACCTCCCACT	59.511	47.619	0.00	0.00	0.00	4.00
422	423	1.963172	AGTTTTGTTCGACCTCCCAC	58.037	50.000	0.00	0.00	0.00	4.61
423	424	3.735591	CTTAGTTTTGTTCGACCTCCCA	58.264	45.455	0.00	0.00	0.00	4.37
424	425	2.483106	GCTTAGTTTTGTTCGACCTCCC	59.517	50.000	0.00	0.00	0.00	4.30
425	426	2.157085	CGCTTAGTTTTGTTCGACCTCC	59.843	50.000	0.00	0.00	0.00	4.30
426	427	3.054878	TCGCTTAGTTTTGTTCGACCTC	58.945	45.455	0.00	0.00	0.00	3.85
427	428	2.798847	GTCGCTTAGTTTTGTTCGACCT	59.201	45.455	0.00	0.00	39.98	3.85
428	429	2.409371	CGTCGCTTAGTTTTGTTCGACC	60.409	50.000	6.94	0.00	42.01	4.79
429	430	2.468777	TCGTCGCTTAGTTTTGTTCGAC	59.531	45.455	0.00	0.00	41.72	4.20
430	431	2.730069	TCGTCGCTTAGTTTTGTTCGA	58.270	42.857	0.00	0.00	0.00	3.71
431	432	3.492725	TTCGTCGCTTAGTTTTGTTCG	57.507	42.857	0.00	0.00	0.00	3.95
432	433	4.896799	GTCTTTCGTCGCTTAGTTTTGTTC	59.103	41.667	0.00	0.00	0.00	3.18
433	434	4.549489	CGTCTTTCGTCGCTTAGTTTTGTT	60.549	41.667	0.00	0.00	34.52	2.83
434	435	3.060740	CGTCTTTCGTCGCTTAGTTTTGT	60.061	43.478	0.00	0.00	34.52	2.83
435	436	3.457596	CGTCTTTCGTCGCTTAGTTTTG	58.542	45.455	0.00	0.00	34.52	2.44
436	437	2.473984	CCGTCTTTCGTCGCTTAGTTTT	59.526	45.455	0.00	0.00	37.94	2.43
437	438	2.056577	CCGTCTTTCGTCGCTTAGTTT	58.943	47.619	0.00	0.00	37.94	2.66
438	439	1.668047	CCCGTCTTTCGTCGCTTAGTT	60.668	52.381	0.00	0.00	37.94	2.24
439	440	0.109412	CCCGTCTTTCGTCGCTTAGT	60.109	55.000	0.00	0.00	37.94	2.24
440	441	0.169672	TCCCGTCTTTCGTCGCTTAG	59.830	55.000	0.00	0.00	37.94	2.18
441	442	0.169672	CTCCCGTCTTTCGTCGCTTA	59.830	55.000	0.00	0.00	37.94	3.09
442	443	1.080705	CTCCCGTCTTTCGTCGCTT	60.081	57.895	0.00	0.00	37.94	4.68
443	444	1.313812	ATCTCCCGTCTTTCGTCGCT	61.314	55.000	0.00	0.00	37.94	4.93
444	445	1.139095	ATCTCCCGTCTTTCGTCGC	59.861	57.895	0.00	0.00	37.94	5.19
445	446	0.525668	CCATCTCCCGTCTTTCGTCG	60.526	60.000	0.00	0.00	37.94	5.12
446	447	0.815734	TCCATCTCCCGTCTTTCGTC	59.184	55.000	0.00	0.00	37.94	4.20
447	448	1.409427	GATCCATCTCCCGTCTTTCGT	59.591	52.381	0.00	0.00	37.94	3.85
448	449	1.269831	GGATCCATCTCCCGTCTTTCG	60.270	57.143	6.95	0.00	39.52	3.46
449	450	2.043227	AGGATCCATCTCCCGTCTTTC	58.957	52.381	15.82	0.00	35.79	2.62
450	451	2.182516	AGGATCCATCTCCCGTCTTT	57.817	50.000	15.82	0.00	35.79	2.52
451	452	2.182516	AAGGATCCATCTCCCGTCTT	57.817	50.000	15.82	0.00	35.79	3.01
452	453	2.178106	AGTAAGGATCCATCTCCCGTCT	59.822	50.000	15.82	0.00	35.79	4.18
453	454	2.599677	AGTAAGGATCCATCTCCCGTC	58.400	52.381	15.82	0.00	35.79	4.79
454	455	2.777459	AGTAAGGATCCATCTCCCGT	57.223	50.000	15.82	0.00	35.79	5.28
455	456	4.423625	AAAAGTAAGGATCCATCTCCCG	57.576	45.455	15.82	0.00	35.79	5.14
487	488	8.756927	GGACTAATAAACTAGGACAAAGGTAGT	58.243	37.037	0.00	0.00	0.00	2.73
488	489	8.979534	AGGACTAATAAACTAGGACAAAGGTAG	58.020	37.037	0.00	0.00	0.00	3.18
489	490	8.906238	AGGACTAATAAACTAGGACAAAGGTA	57.094	34.615	0.00	0.00	0.00	3.08
490	491	7.809880	AGGACTAATAAACTAGGACAAAGGT	57.190	36.000	0.00	0.00	0.00	3.50
505	506	9.688091	TGGCACAAAATACAATAAGGACTAATA	57.312	29.630	0.00	0.00	31.92	0.98
506	507	8.588290	TGGCACAAAATACAATAAGGACTAAT	57.412	30.769	0.00	0.00	31.92	1.73
525	526	6.839124	AATCTATGATCAAAGTTTGGCACA	57.161	33.333	15.47	12.65	0.00	4.57
526	527	9.076596	GTTAAATCTATGATCAAAGTTTGGCAC	57.923	33.333	15.47	7.92	0.00	5.01
527	528	9.023962	AGTTAAATCTATGATCAAAGTTTGGCA	57.976	29.630	15.47	13.69	0.00	4.92
528	529	9.860898	AAGTTAAATCTATGATCAAAGTTTGGC	57.139	29.630	15.47	8.75	0.00	4.52
544	545	9.979578	TGCATGAACATTTTGTAAGTTAAATCT	57.020	25.926	0.00	0.00	0.00	2.40
551	552	9.740239	GATGATATGCATGAACATTTTGTAAGT	57.260	29.630	10.16	0.00	37.34	2.24
552	553	8.898792	CGATGATATGCATGAACATTTTGTAAG	58.101	33.333	10.16	0.00	37.34	2.34
553	554	8.619546	TCGATGATATGCATGAACATTTTGTAA	58.380	29.630	10.16	0.00	37.34	2.41
554	555	8.152309	TCGATGATATGCATGAACATTTTGTA	57.848	30.769	10.16	0.00	37.34	2.41
555	556	7.030075	TCGATGATATGCATGAACATTTTGT	57.970	32.000	10.16	0.00	37.34	2.83
556	557	7.917720	TTCGATGATATGCATGAACATTTTG	57.082	32.000	10.16	6.73	37.34	2.44
557	558	8.929827	TTTTCGATGATATGCATGAACATTTT	57.070	26.923	10.16	0.00	37.34	1.82
558	559	9.537192	AATTTTCGATGATATGCATGAACATTT	57.463	25.926	10.16	0.40	37.34	2.32
564	565	9.447157	TGGTATAATTTTCGATGATATGCATGA	57.553	29.630	10.16	0.00	37.34	3.07
673	674	9.171877	TCTCTTTTGTAATTTGTGCCAAAATTT	57.828	25.926	10.60	0.00	39.73	1.82
674	675	8.611757	GTCTCTTTTGTAATTTGTGCCAAAATT	58.388	29.630	10.29	10.29	41.45	1.82
675	676	7.768120	TGTCTCTTTTGTAATTTGTGCCAAAAT	59.232	29.630	4.76	0.25	36.52	1.82
676	677	7.099764	TGTCTCTTTTGTAATTTGTGCCAAAA	58.900	30.769	4.76	0.00	35.95	2.44
677	678	6.634805	TGTCTCTTTTGTAATTTGTGCCAAA	58.365	32.000	3.33	3.33	0.00	3.28
678	679	6.214191	TGTCTCTTTTGTAATTTGTGCCAA	57.786	33.333	0.00	0.00	0.00	4.52
679	680	5.843673	TGTCTCTTTTGTAATTTGTGCCA	57.156	34.783	0.00	0.00	0.00	4.92
680	681	7.713764	ATTTGTCTCTTTTGTAATTTGTGCC	57.286	32.000	0.00	0.00	0.00	5.01
689	690	8.717821	CGTCCTGATTTATTTGTCTCTTTTGTA	58.282	33.333	0.00	0.00	0.00	2.41
690	691	7.308589	CCGTCCTGATTTATTTGTCTCTTTTGT	60.309	37.037	0.00	0.00	0.00	2.83
691	692	7.023575	CCGTCCTGATTTATTTGTCTCTTTTG	58.976	38.462	0.00	0.00	0.00	2.44
692	693	6.940298	TCCGTCCTGATTTATTTGTCTCTTTT	59.060	34.615	0.00	0.00	0.00	2.27
693	694	6.472887	TCCGTCCTGATTTATTTGTCTCTTT	58.527	36.000	0.00	0.00	0.00	2.52
694	695	6.049955	TCCGTCCTGATTTATTTGTCTCTT	57.950	37.500	0.00	0.00	0.00	2.85
695	696	5.395768	CCTCCGTCCTGATTTATTTGTCTCT	60.396	44.000	0.00	0.00	0.00	3.10
696	697	4.811557	CCTCCGTCCTGATTTATTTGTCTC	59.188	45.833	0.00	0.00	0.00	3.36
697	698	4.225267	ACCTCCGTCCTGATTTATTTGTCT	59.775	41.667	0.00	0.00	0.00	3.41
698	699	4.514401	ACCTCCGTCCTGATTTATTTGTC	58.486	43.478	0.00	0.00	0.00	3.18
699	700	4.569719	ACCTCCGTCCTGATTTATTTGT	57.430	40.909	0.00	0.00	0.00	2.83
700	701	5.897377	AAACCTCCGTCCTGATTTATTTG	57.103	39.130	0.00	0.00	0.00	2.32
701	702	6.911250	AAAAACCTCCGTCCTGATTTATTT	57.089	33.333	0.00	0.00	0.00	1.40
735	736	5.104444	TCTCTTGTCTACTACTACCTCCAGG	60.104	48.000	0.00	0.00	42.17	4.45
736	737	5.991861	TCTCTTGTCTACTACTACCTCCAG	58.008	45.833	0.00	0.00	0.00	3.86
737	738	6.578313	ATCTCTTGTCTACTACTACCTCCA	57.422	41.667	0.00	0.00	0.00	3.86
738	739	9.577222	AATTATCTCTTGTCTACTACTACCTCC	57.423	37.037	0.00	0.00	0.00	4.30
811	813	4.162651	ACCAATTCAGCCTTCAAGGATTT	58.837	39.130	7.98	0.00	37.67	2.17
835	837	3.012518	CCTGTTTCTGCTTCCGATGATT	58.987	45.455	0.00	0.00	0.00	2.57
852	854	3.295800	GGATCGTTCGGTCCCTGT	58.704	61.111	12.85	0.00	0.00	4.00
859	861	2.504519	GGGAAGGGGATCGTTCGG	59.495	66.667	0.00	0.00	38.32	4.30
863	865	2.762875	GTCCGGGAAGGGGATCGT	60.763	66.667	0.00	0.00	41.52	3.73
868	870	4.078516	GTCGTGTCCGGGAAGGGG	62.079	72.222	0.00	0.00	41.52	4.79
996	999	3.136123	CACTTGGCGGCCATGGAG	61.136	66.667	30.96	23.90	33.63	3.86
1131	1134	3.479866	AAAGGATGAAGCCCTGGATTT	57.520	42.857	0.00	0.00	33.55	2.17
1169	1173	2.349060	GCAACGCTCGACATAACAACAA	60.349	45.455	0.00	0.00	0.00	2.83
1187	1191	2.892852	CAATCTCCCTCAAAACCTGCAA	59.107	45.455	0.00	0.00	0.00	4.08
1213	1217	1.827969	CACTTGAACCCGGAGAGATCT	59.172	52.381	0.73	0.00	0.00	2.75
1257	1261	7.727578	TGATTCAGGTAGGTTTATCTGTACA	57.272	36.000	0.00	0.00	38.82	2.90
1267	1271	5.304686	TCACAAGTTGATTCAGGTAGGTT	57.695	39.130	10.54	0.00	0.00	3.50
1273	1277	5.106396	GGAACAGATCACAAGTTGATTCAGG	60.106	44.000	10.54	3.06	45.67	3.86
1286	1290	6.707440	TCTAGATGAGAAGGAACAGATCAC	57.293	41.667	0.00	0.00	0.00	3.06
1287	1291	6.957920	CTCTAGATGAGAAGGAACAGATCA	57.042	41.667	0.00	0.00	45.39	2.92
1303	1307	4.774726	TGTTGGAAGCTGAAGTCTCTAGAT	59.225	41.667	0.00	0.00	0.00	1.98
1305	1309	4.527509	TGTTGGAAGCTGAAGTCTCTAG	57.472	45.455	0.00	0.00	0.00	2.43
1319	1323	7.201609	CGTCTAGCATAATAAAGCTTGTTGGAA	60.202	37.037	0.00	0.00	42.05	3.53
1324	1328	5.671493	ACCGTCTAGCATAATAAAGCTTGT	58.329	37.500	0.00	0.00	42.05	3.16
1448	1452	7.081833	TTGTAGTAAGCACAAAACCTCAAGGT	61.082	38.462	0.00	0.00	39.42	3.50
1550	1708	2.218603	ACACGCACCCTTTTTAGAGTG	58.781	47.619	0.00	0.00	34.85	3.51
1554	1712	3.135994	ACTGTACACGCACCCTTTTTAG	58.864	45.455	0.00	0.00	0.00	1.85
1562	1720	3.119029	TCCCTAAATACTGTACACGCACC	60.119	47.826	0.00	0.00	0.00	5.01
1566	1724	4.117685	GCCTTCCCTAAATACTGTACACG	58.882	47.826	0.00	0.00	0.00	4.49
1570	1728	4.473559	AGCTTGCCTTCCCTAAATACTGTA	59.526	41.667	0.00	0.00	0.00	2.74
1619	1784	8.424918	TCATATAGGATCAAAACAAGAGACCTC	58.575	37.037	0.00	0.00	31.51	3.85
1663	1828	6.542005	ACAATCACTGTAAGACATCACACAAA	59.458	34.615	0.00	0.00	36.10	2.83
1686	1851	3.324846	AGCTCCAACTTGTCAGATACACA	59.675	43.478	0.00	0.00	38.00	3.72
1688	1853	4.623932	AAGCTCCAACTTGTCAGATACA	57.376	40.909	0.00	0.00	35.88	2.29
1689	1854	5.948992	AAAAGCTCCAACTTGTCAGATAC	57.051	39.130	0.00	0.00	0.00	2.24
1693	1858	5.455392	CATGTAAAAGCTCCAACTTGTCAG	58.545	41.667	0.00	0.00	0.00	3.51
1703	1868	4.640201	TGATGTAAGCCATGTAAAAGCTCC	59.360	41.667	0.00	0.00	35.30	4.70
1709	1874	5.186603	TGCCAAATGATGTAAGCCATGTAAA	59.813	36.000	0.00	0.00	32.56	2.01
1794	1959	5.811399	TTTGGTTTAGTTATCATGCTCCG	57.189	39.130	0.00	0.00	0.00	4.63
1826	1991	0.908198	ACTCCTGATGTCTTGCTCCC	59.092	55.000	0.00	0.00	0.00	4.30
1938	2112	6.146837	GTGCTCTACATGGTTATCAGCTTATG	59.853	42.308	0.00	0.00	0.00	1.90
1986	2165	3.002791	CACTGCAGAGCGAAGGAATTTA	58.997	45.455	23.35	0.00	0.00	1.40
2164	2343	4.887071	GGCCCTGACAATAATCAACACATA	59.113	41.667	0.00	0.00	0.00	2.29
2165	2344	3.701040	GGCCCTGACAATAATCAACACAT	59.299	43.478	0.00	0.00	0.00	3.21
2413	2608	2.095372	GGAAGGTAGCAAACACATACGC	59.905	50.000	0.00	0.00	0.00	4.42
2502	2698	9.790344	CATCAGTTATAGGAATTCTGGAGAAAT	57.210	33.333	5.23	0.00	37.61	2.17
2508	2704	6.830912	TGTCCATCAGTTATAGGAATTCTGG	58.169	40.000	5.23	1.21	0.00	3.86
2568	2764	8.708378	AGAGATGATTTCTGGAACATGTATACA	58.292	33.333	8.27	8.27	38.20	2.29
2569	2765	9.553064	AAGAGATGATTTCTGGAACATGTATAC	57.447	33.333	0.00	0.00	38.20	1.47
2785	2987	2.783828	ATCCAGTCGAAGCATAGTCG	57.216	50.000	0.00	0.00	39.88	4.18
2896	3098	7.827236	CCAGGGTTTCAACTACTATTGATGTTA	59.173	37.037	0.00	0.00	38.37	2.41
2926	3128	3.067106	TGGATTCTTCTGTTCAGTTCGC	58.933	45.455	0.00	0.00	0.00	4.70
3087	3290	5.952347	TTCTCCAGGTTTCTAATACTCCC	57.048	43.478	0.00	0.00	0.00	4.30
3108	3311	1.379044	CGGCCAGCATTCCTCCTTT	60.379	57.895	2.24	0.00	0.00	3.11
3126	3329	1.139520	CATGCCGGTGCTTAAAGCC	59.860	57.895	1.90	0.00	41.51	4.35
3139	3342	1.753073	CAGGTCCTGATTTTCCATGCC	59.247	52.381	14.26	0.00	32.44	4.40
3176	3379	2.594303	ACCGACGACCCGTACACA	60.594	61.111	0.00	0.00	41.37	3.72
3196	3400	8.785329	TTTTGCACTACTCATTCATACATACA	57.215	30.769	0.00	0.00	0.00	2.29
3264	3468	2.037511	TCAAACAACTGGGTAGGGTACG	59.962	50.000	0.00	0.00	0.00	3.67
3265	3469	3.775261	TCAAACAACTGGGTAGGGTAC	57.225	47.619	0.00	0.00	0.00	3.34
3266	3470	5.786457	TCTATTCAAACAACTGGGTAGGGTA	59.214	40.000	0.00	0.00	0.00	3.69
3267	3471	3.895704	ATTCAAACAACTGGGTAGGGT	57.104	42.857	0.00	0.00	0.00	4.34
3268	3472	5.174037	TCTATTCAAACAACTGGGTAGGG	57.826	43.478	0.00	0.00	0.00	3.53
3269	3473	6.001460	TGTTCTATTCAAACAACTGGGTAGG	58.999	40.000	0.00	0.00	33.86	3.18
3270	3474	7.687941	ATGTTCTATTCAAACAACTGGGTAG	57.312	36.000	0.00	0.00	39.84	3.18
3343	3547	8.755977	AGGCATGTTTCTTTCTTCATTCATATT	58.244	29.630	0.00	0.00	0.00	1.28
3403	3608	1.302192	CGTCTGCGAGGGGGAAAAA	60.302	57.895	0.00	0.00	41.33	1.94
3404	3609	2.345991	CGTCTGCGAGGGGGAAAA	59.654	61.111	0.00	0.00	41.33	2.29
3478	3684	2.244651	GCACTCCGTTGTCGCTTGT	61.245	57.895	0.00	0.00	35.54	3.16
3479	3685	2.162921	CTGCACTCCGTTGTCGCTTG	62.163	60.000	0.00	0.00	35.54	4.01
3483	3689	2.029073	ACCTGCACTCCGTTGTCG	59.971	61.111	0.00	0.00	0.00	4.35
3527	3733	3.682885	CGGTGGCCTTGCATTGCA	61.683	61.111	7.38	7.38	36.47	4.08
3528	3734	4.440127	CCGGTGGCCTTGCATTGC	62.440	66.667	3.32	0.46	0.00	3.56
3529	3735	4.440127	GCCGGTGGCCTTGCATTG	62.440	66.667	3.32	0.00	44.06	2.82
3588	3794	1.393883	GAACTCTTCCGCCACGATTTC	59.606	52.381	0.00	0.00	0.00	2.17
3705	3912	2.656069	GGTAGGTTGCGAGGGAGCA	61.656	63.158	0.00	0.00	46.54	4.26
3712	3919	1.597797	CCGGTAGTGGTAGGTTGCGA	61.598	60.000	0.00	0.00	0.00	5.10
3839	4083	1.275573	ACTTCTTAACGGCTCTCACCC	59.724	52.381	0.00	0.00	0.00	4.61
3871	4115	0.845102	ATTGAAACGGGAGGGGGAGT	60.845	55.000	0.00	0.00	0.00	3.85
4015	4274	7.907563	GTGCTTGCTTAATTTAGATTCAGAGAC	59.092	37.037	0.00	0.00	0.00	3.36
4059	4318	3.181483	GGCTCTAAAATTAGGACGACGGA	60.181	47.826	0.00	0.00	0.00	4.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.