Multiple sequence alignment - TraesCS6D01G162700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G162700 chr6D 100.000 3479 0 0 1 3479 141589110 141592588 0.000000e+00 6425.0
1 TraesCS6D01G162700 chr6A 96.422 2096 51 9 631 2703 186528312 186530406 0.000000e+00 3434.0
2 TraesCS6D01G162700 chr6A 88.988 672 34 15 1 646 186527637 186528294 0.000000e+00 795.0
3 TraesCS6D01G162700 chr6A 86.688 308 30 6 2806 3109 186530418 186530718 7.200000e-87 331.0
4 TraesCS6D01G162700 chr6A 75.962 312 64 6 1651 1962 411628251 411627951 2.160000e-32 150.0
5 TraesCS6D01G162700 chr6A 87.879 66 5 2 693 755 186527196 186527261 1.340000e-09 75.0
6 TraesCS6D01G162700 chr6B 93.202 2236 72 29 510 2702 245590661 245592859 0.000000e+00 3214.0
7 TraesCS6D01G162700 chr6B 91.459 281 19 4 206 483 245589071 245589349 7.050000e-102 381.0
8 TraesCS6D01G162700 chr6B 94.304 158 8 1 1 158 245588902 245589058 1.250000e-59 241.0
9 TraesCS6D01G162700 chr6B 88.889 63 7 0 2713 2775 486598153 486598091 1.040000e-10 78.7
10 TraesCS6D01G162700 chr6B 87.879 66 5 2 693 755 245588489 245588554 1.340000e-09 75.0
11 TraesCS6D01G162700 chr3D 88.335 1423 146 7 981 2386 546613747 546612328 0.000000e+00 1690.0
12 TraesCS6D01G162700 chr3D 92.759 290 20 1 3106 3395 285911920 285912208 5.370000e-113 418.0
13 TraesCS6D01G162700 chr3B 87.843 1423 153 7 981 2386 723613291 723611872 0.000000e+00 1652.0
14 TraesCS6D01G162700 chr2D 93.310 284 18 1 3108 3391 555068778 555069060 5.370000e-113 418.0
15 TraesCS6D01G162700 chr2D 92.123 292 20 3 3106 3397 477630095 477630383 3.230000e-110 409.0
16 TraesCS6D01G162700 chr1B 92.982 285 17 3 3108 3391 160737835 160738117 2.500000e-111 412.0
17 TraesCS6D01G162700 chr5D 91.864 295 22 2 3106 3399 508089799 508089506 8.990000e-111 411.0
18 TraesCS6D01G162700 chr5D 92.096 291 22 1 3105 3395 549921560 549921271 3.230000e-110 409.0
19 TraesCS6D01G162700 chr5D 92.069 290 22 1 3106 3395 399710922 399710634 1.160000e-109 407.0
20 TraesCS6D01G162700 chr5D 95.122 41 2 0 2755 2795 61040330 61040290 8.060000e-07 65.8
21 TraesCS6D01G162700 chr1D 92.123 292 21 2 3108 3398 335008167 335007877 8.990000e-111 411.0
22 TraesCS6D01G162700 chr7D 92.606 284 20 1 3108 3391 209496563 209496845 1.160000e-109 407.0
23 TraesCS6D01G162700 chr7D 83.951 405 58 6 1970 2371 8005002 8005402 7.050000e-102 381.0
24 TraesCS6D01G162700 chr7D 88.479 217 25 0 1456 1672 390933671 390933887 2.660000e-66 263.0
25 TraesCS6D01G162700 chr3A 75.976 333 67 4 1627 1959 409684249 409684568 3.590000e-35 159.0
26 TraesCS6D01G162700 chr2A 76.699 309 59 5 1627 1935 150708081 150708376 3.590000e-35 159.0
27 TraesCS6D01G162700 chr2A 76.324 321 63 7 1627 1947 499676633 499676940 3.590000e-35 159.0
28 TraesCS6D01G162700 chr2A 75.595 336 69 4 1627 1962 132784865 132784543 1.670000e-33 154.0
29 TraesCS6D01G162700 chr1A 75.000 336 62 13 1627 1962 204546038 204545725 6.060000e-28 135.0
30 TraesCS6D01G162700 chr7A 74.455 321 68 7 1627 1947 415359042 415359348 3.650000e-25 126.0
31 TraesCS6D01G162700 chr7A 76.404 178 38 4 2003 2178 643993316 643993491 3.700000e-15 93.5
32 TraesCS6D01G162700 chr4D 78.125 160 24 10 2014 2167 14830598 14830444 1.330000e-14 91.6
33 TraesCS6D01G162700 chr4A 77.711 166 26 10 2008 2167 456475072 456475232 1.330000e-14 91.6
34 TraesCS6D01G162700 chr7B 75.281 178 40 4 2003 2178 607281691 607281866 8.000000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G162700 chr6D 141589110 141592588 3478 False 6425.00 6425 100.00000 1 3479 1 chr6D.!!$F1 3478
1 TraesCS6D01G162700 chr6A 186527196 186530718 3522 False 1158.75 3434 89.99425 1 3109 4 chr6A.!!$F1 3108
2 TraesCS6D01G162700 chr6B 245588489 245592859 4370 False 977.75 3214 91.71100 1 2702 4 chr6B.!!$F1 2701
3 TraesCS6D01G162700 chr3D 546612328 546613747 1419 True 1690.00 1690 88.33500 981 2386 1 chr3D.!!$R1 1405
4 TraesCS6D01G162700 chr3B 723611872 723613291 1419 True 1652.00 1652 87.84300 981 2386 1 chr3B.!!$R1 1405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 477 0.240945 GTGTTCTCATTTGGGGTGCG 59.759 55.0 0.00 0.0 0.00 5.34 F
499 994 0.248296 TTGCGCTCAACGTCCAAAAC 60.248 50.0 9.73 0.0 46.11 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 3480 1.735700 CGGAACTGCTTCAGTATCGCA 60.736 52.381 0.0 0.0 44.62 5.10 R
2554 4411 2.612212 GACAAAGTTGCTTCGGTTGAGA 59.388 45.455 0.0 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 477 0.240945 GTGTTCTCATTTGGGGTGCG 59.759 55.000 0.00 0.00 0.00 5.34
158 613 6.126409 AGATTTGTTGGGCCGATTTATTCTA 58.874 36.000 0.00 0.00 0.00 2.10
159 614 5.570234 TTTGTTGGGCCGATTTATTCTAC 57.430 39.130 0.00 0.00 0.00 2.59
160 615 4.497291 TGTTGGGCCGATTTATTCTACT 57.503 40.909 0.00 0.00 0.00 2.57
161 616 4.448210 TGTTGGGCCGATTTATTCTACTC 58.552 43.478 0.00 0.00 0.00 2.59
162 617 3.764237 TGGGCCGATTTATTCTACTCC 57.236 47.619 0.00 0.00 0.00 3.85
163 618 3.042682 TGGGCCGATTTATTCTACTCCA 58.957 45.455 0.00 0.00 0.00 3.86
195 650 5.278964 CATCACATGCATCATACTACTGC 57.721 43.478 0.00 0.00 36.45 4.40
196 651 4.677673 TCACATGCATCATACTACTGCT 57.322 40.909 0.00 0.00 36.84 4.24
197 652 4.374399 TCACATGCATCATACTACTGCTG 58.626 43.478 0.00 0.00 36.84 4.41
198 653 4.124970 CACATGCATCATACTACTGCTGT 58.875 43.478 0.00 0.66 36.84 4.40
199 654 4.573607 CACATGCATCATACTACTGCTGTT 59.426 41.667 0.09 0.00 36.84 3.16
200 655 5.065602 CACATGCATCATACTACTGCTGTTT 59.934 40.000 0.09 0.00 36.84 2.83
201 656 5.649395 ACATGCATCATACTACTGCTGTTTT 59.351 36.000 0.09 0.00 36.84 2.43
202 657 6.151648 ACATGCATCATACTACTGCTGTTTTT 59.848 34.615 0.09 0.00 36.84 1.94
249 725 3.795101 ACACGTCATTTTCGGATCGTATC 59.205 43.478 0.00 0.00 0.00 2.24
299 775 6.099701 TGGTGGTAGCTTGTCTATCATACAAT 59.900 38.462 0.00 0.00 40.29 2.71
420 901 2.202932 CGCAGCCGCTTGATACCT 60.203 61.111 0.00 0.00 35.30 3.08
499 994 0.248296 TTGCGCTCAACGTCCAAAAC 60.248 50.000 9.73 0.00 46.11 2.43
522 1022 0.447011 ACTCGTTCTAACCTCGCTCG 59.553 55.000 0.00 0.00 0.00 5.03
588 2372 1.275421 TTGCATCACCCCACCCGATA 61.275 55.000 0.00 0.00 0.00 2.92
615 2403 0.945099 TTTTATGCCGTCACACGCAA 59.055 45.000 0.00 0.00 40.91 4.85
651 2472 5.190677 CCGGAGTGTTATTTTATCCAGGTT 58.809 41.667 0.00 0.00 0.00 3.50
781 2606 4.562485 TGCACACGCAGACGACGT 62.562 61.111 0.00 0.00 45.36 4.34
877 2707 2.159282 TGCGGTAGCTAAAGAGTACAGC 60.159 50.000 0.00 0.00 45.42 4.40
916 2751 1.815421 CCCAGCTATCGCACACACC 60.815 63.158 0.00 0.00 39.10 4.16
921 2756 1.298157 GCTATCGCACACACCTGCAA 61.298 55.000 0.00 0.00 36.94 4.08
936 2771 2.435586 CAACGGCCAGCTCAGGAG 60.436 66.667 2.24 0.00 0.00 3.69
970 2808 9.237187 GAAGAGAAGACATTTATTTTCTTCCCT 57.763 33.333 7.82 0.00 44.29 4.20
1311 3162 1.979693 GAGGCACCTGGAGACGACT 60.980 63.158 0.00 0.00 0.00 4.18
1623 3480 1.115467 CCTACAAGCTCCTCACCGAT 58.885 55.000 0.00 0.00 0.00 4.18
2425 4282 0.179137 CGCACGAGCAGATAAGGACA 60.179 55.000 5.50 0.00 42.27 4.02
2554 4411 2.886859 CGAGACACGCACAAGACTT 58.113 52.632 0.00 0.00 34.51 3.01
2600 4469 0.874175 CACGCACACAGAGTCGGAAA 60.874 55.000 0.00 0.00 0.00 3.13
2608 4477 2.600420 CACAGAGTCGGAAACATCGATG 59.400 50.000 23.68 23.68 38.93 3.84
2661 4540 0.319900 TGTTGCGAGTCTTGGAGCTC 60.320 55.000 4.71 4.71 0.00 4.09
2703 4582 1.779724 CGCGAGAACCGAAGCTAATAC 59.220 52.381 0.00 0.00 41.76 1.89
2705 4584 3.044286 GCGAGAACCGAAGCTAATACTC 58.956 50.000 0.00 0.00 41.76 2.59
2706 4585 3.630101 CGAGAACCGAAGCTAATACTCC 58.370 50.000 0.00 0.00 41.76 3.85
2707 4586 3.550436 CGAGAACCGAAGCTAATACTCCC 60.550 52.174 0.00 0.00 41.76 4.30
2709 4588 4.031611 AGAACCGAAGCTAATACTCCCTT 58.968 43.478 0.00 0.00 0.00 3.95
2710 4589 4.099727 AGAACCGAAGCTAATACTCCCTTC 59.900 45.833 0.00 0.00 0.00 3.46
2712 4591 3.967987 ACCGAAGCTAATACTCCCTTCAT 59.032 43.478 0.00 0.00 34.77 2.57
2713 4592 4.409247 ACCGAAGCTAATACTCCCTTCATT 59.591 41.667 0.00 0.00 34.77 2.57
2715 4594 5.467063 CCGAAGCTAATACTCCCTTCATTTC 59.533 44.000 0.00 0.00 34.77 2.17
2716 4595 6.049149 CGAAGCTAATACTCCCTTCATTTCA 58.951 40.000 0.00 0.00 34.77 2.69
2717 4596 6.538742 CGAAGCTAATACTCCCTTCATTTCAA 59.461 38.462 0.00 0.00 34.77 2.69
2719 4598 8.650143 AAGCTAATACTCCCTTCATTTCAAAA 57.350 30.769 0.00 0.00 0.00 2.44
2720 4599 8.829373 AGCTAATACTCCCTTCATTTCAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
2721 4600 9.920946 AGCTAATACTCCCTTCATTTCAAAATA 57.079 29.630 0.00 0.00 0.00 1.40
2728 4607 9.588096 ACTCCCTTCATTTCAAAATAAGTAACT 57.412 29.630 0.00 0.00 0.00 2.24
2789 4668 9.893305 AAAATTGAGTCACTTAATTTAAGACGG 57.107 29.630 17.99 10.60 38.23 4.79
2790 4669 8.842358 AATTGAGTCACTTAATTTAAGACGGA 57.158 30.769 20.33 12.33 39.09 4.69
2791 4670 7.884816 TTGAGTCACTTAATTTAAGACGGAG 57.115 36.000 20.33 6.95 39.09 4.63
2792 4671 6.395629 TGAGTCACTTAATTTAAGACGGAGG 58.604 40.000 20.33 5.29 39.09 4.30
2793 4672 6.209986 TGAGTCACTTAATTTAAGACGGAGGA 59.790 38.462 20.33 7.06 39.09 3.71
2794 4673 7.001099 AGTCACTTAATTTAAGACGGAGGAA 57.999 36.000 20.33 0.00 39.09 3.36
2795 4674 7.097834 AGTCACTTAATTTAAGACGGAGGAAG 58.902 38.462 20.33 0.00 39.09 3.46
2796 4675 6.872547 GTCACTTAATTTAAGACGGAGGAAGT 59.127 38.462 20.33 0.00 39.09 3.01
2797 4676 8.031277 GTCACTTAATTTAAGACGGAGGAAGTA 58.969 37.037 20.33 0.00 39.09 2.24
2798 4677 8.587608 TCACTTAATTTAAGACGGAGGAAGTAA 58.412 33.333 20.33 0.00 39.09 2.24
2799 4678 9.379791 CACTTAATTTAAGACGGAGGAAGTAAT 57.620 33.333 20.33 0.00 39.09 1.89
2834 4713 6.586082 GGTCTTCGTTGCATGATATTTTGTTT 59.414 34.615 0.00 0.00 0.00 2.83
2835 4714 7.753132 GGTCTTCGTTGCATGATATTTTGTTTA 59.247 33.333 0.00 0.00 0.00 2.01
2864 4743 5.666969 TCCTCTTGTTATGTTTGTTGTCG 57.333 39.130 0.00 0.00 0.00 4.35
2865 4744 5.361427 TCCTCTTGTTATGTTTGTTGTCGA 58.639 37.500 0.00 0.00 0.00 4.20
2896 4775 3.271250 CCAGGCAGGCTACATGTTT 57.729 52.632 2.30 0.00 0.00 2.83
2902 4781 4.398988 CAGGCAGGCTACATGTTTCAATTA 59.601 41.667 2.30 0.00 0.00 1.40
2906 4785 6.094881 GGCAGGCTACATGTTTCAATTAAGTA 59.905 38.462 2.30 0.00 0.00 2.24
2965 4848 3.853698 TTGGGGCCGTTAAAGCGCT 62.854 57.895 2.64 2.64 42.40 5.92
2995 4878 2.259917 TCTCTCCTGTGAAATGCCTGA 58.740 47.619 0.00 0.00 0.00 3.86
3008 4891 2.659016 CCTGAGCCAGCGAAGACA 59.341 61.111 0.00 0.00 0.00 3.41
3011 4894 2.811317 GAGCCAGCGAAGACACCG 60.811 66.667 0.00 0.00 0.00 4.94
3014 4897 1.373748 GCCAGCGAAGACACCGTTA 60.374 57.895 0.00 0.00 0.00 3.18
3017 4900 1.012486 CAGCGAAGACACCGTTACCC 61.012 60.000 0.00 0.00 0.00 3.69
3023 4906 2.850130 ACACCGTTACCCCCAGCA 60.850 61.111 0.00 0.00 0.00 4.41
3036 4919 0.456653 CCCAGCAAGCGTGTAAATGC 60.457 55.000 0.59 0.00 39.06 3.56
3054 4937 4.234019 AGCACCGCTGTGTTTTCA 57.766 50.000 10.12 0.00 44.65 2.69
3077 4960 3.384348 GGGACCACAGCGGAACTA 58.616 61.111 0.00 0.00 38.63 2.24
3086 4969 2.095768 CACAGCGGAACTACCACAAATG 60.096 50.000 0.00 0.00 38.90 2.32
3094 4977 2.566913 ACTACCACAAATGTCACGCAA 58.433 42.857 0.00 0.00 0.00 4.85
3098 4981 4.355543 ACCACAAATGTCACGCAATATC 57.644 40.909 0.00 0.00 0.00 1.63
3099 4982 3.128589 ACCACAAATGTCACGCAATATCC 59.871 43.478 0.00 0.00 0.00 2.59
3109 4992 4.868171 GTCACGCAATATCCACAGTTTAGA 59.132 41.667 0.00 0.00 0.00 2.10
3110 4993 4.868171 TCACGCAATATCCACAGTTTAGAC 59.132 41.667 0.00 0.00 0.00 2.59
3111 4994 4.870426 CACGCAATATCCACAGTTTAGACT 59.130 41.667 0.00 0.00 36.25 3.24
3112 4995 6.040247 CACGCAATATCCACAGTTTAGACTA 58.960 40.000 0.00 0.00 33.90 2.59
3113 4996 6.199154 CACGCAATATCCACAGTTTAGACTAG 59.801 42.308 0.00 0.00 33.90 2.57
3114 4997 5.175856 CGCAATATCCACAGTTTAGACTAGC 59.824 44.000 0.00 0.00 33.90 3.42
3115 4998 5.467063 GCAATATCCACAGTTTAGACTAGCC 59.533 44.000 0.00 0.00 33.90 3.93
3116 4999 6.582636 CAATATCCACAGTTTAGACTAGCCA 58.417 40.000 0.00 0.00 33.90 4.75
3117 5000 3.955650 TCCACAGTTTAGACTAGCCAC 57.044 47.619 0.00 0.00 33.90 5.01
3118 5001 3.236047 TCCACAGTTTAGACTAGCCACA 58.764 45.455 0.00 0.00 33.90 4.17
3119 5002 3.644265 TCCACAGTTTAGACTAGCCACAA 59.356 43.478 0.00 0.00 33.90 3.33
3120 5003 4.286032 TCCACAGTTTAGACTAGCCACAAT 59.714 41.667 0.00 0.00 33.90 2.71
3121 5004 4.393062 CCACAGTTTAGACTAGCCACAATG 59.607 45.833 0.00 0.00 33.90 2.82
3122 5005 4.393062 CACAGTTTAGACTAGCCACAATGG 59.607 45.833 0.00 0.00 36.00 3.16
3123 5006 3.941483 CAGTTTAGACTAGCCACAATGGG 59.059 47.826 0.00 0.00 34.39 4.00
3135 5018 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
3136 5019 5.057149 GCCACAATGGGTAGTAACATAGAG 58.943 45.833 0.00 0.00 38.19 2.43
3137 5020 5.396436 GCCACAATGGGTAGTAACATAGAGT 60.396 44.000 0.00 0.00 38.19 3.24
3138 5021 6.183360 GCCACAATGGGTAGTAACATAGAGTA 60.183 42.308 0.00 0.00 38.19 2.59
3139 5022 7.434492 CCACAATGGGTAGTAACATAGAGTAG 58.566 42.308 0.00 0.00 32.67 2.57
3140 5023 7.069578 CCACAATGGGTAGTAACATAGAGTAGT 59.930 40.741 0.00 0.00 32.67 2.73
3141 5024 9.128404 CACAATGGGTAGTAACATAGAGTAGTA 57.872 37.037 0.00 0.00 0.00 1.82
3142 5025 9.705103 ACAATGGGTAGTAACATAGAGTAGTAA 57.295 33.333 0.00 0.00 0.00 2.24
3143 5026 9.962783 CAATGGGTAGTAACATAGAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
3144 5027 9.705103 AATGGGTAGTAACATAGAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
3145 5028 9.878737 ATGGGTAGTAACATAGAGTAGTAACAT 57.121 33.333 0.00 0.00 0.00 2.71
3146 5029 9.128404 TGGGTAGTAACATAGAGTAGTAACATG 57.872 37.037 0.00 0.00 0.00 3.21
3147 5030 8.081025 GGGTAGTAACATAGAGTAGTAACATGC 58.919 40.741 0.00 0.00 0.00 4.06
3148 5031 8.081025 GGTAGTAACATAGAGTAGTAACATGCC 58.919 40.741 0.00 0.00 0.00 4.40
3149 5032 7.052142 AGTAACATAGAGTAGTAACATGCCC 57.948 40.000 0.00 0.00 0.00 5.36
3150 5033 5.950544 AACATAGAGTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
3151 5034 6.500589 AACATAGAGTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
3152 5035 5.858381 ACATAGAGTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
3166 5049 5.858381 CATGCCCATGTTACTACTCTATGT 58.142 41.667 0.13 0.00 34.23 2.29
3167 5050 5.950544 TGCCCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
3168 5051 7.441836 CATGCCCATGTTACTACTCTATGTTA 58.558 38.462 0.13 0.00 34.23 2.41
3169 5052 6.812998 TGCCCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
3170 5053 6.610020 TGCCCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
3171 5054 7.781219 TGCCCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
3172 5055 8.804204 GCCCATGTTACTACTCTATGTTACTAT 58.196 37.037 0.00 0.00 0.00 2.12
3197 5080 8.834004 TCTTTATAGTGGGTAGTAACAGATGT 57.166 34.615 0.00 0.00 0.00 3.06
3198 5081 8.692710 TCTTTATAGTGGGTAGTAACAGATGTG 58.307 37.037 0.00 0.00 0.00 3.21
3199 5082 5.871396 ATAGTGGGTAGTAACAGATGTGG 57.129 43.478 0.00 0.00 0.00 4.17
3200 5083 2.236395 AGTGGGTAGTAACAGATGTGGC 59.764 50.000 0.00 0.00 0.00 5.01
3201 5084 1.206132 TGGGTAGTAACAGATGTGGCG 59.794 52.381 0.00 0.00 0.00 5.69
3202 5085 1.206371 GGGTAGTAACAGATGTGGCGT 59.794 52.381 0.00 0.00 0.00 5.68
3203 5086 2.428171 GGGTAGTAACAGATGTGGCGTA 59.572 50.000 0.00 0.00 0.00 4.42
3204 5087 3.119029 GGGTAGTAACAGATGTGGCGTAA 60.119 47.826 0.00 0.00 0.00 3.18
3205 5088 3.861689 GGTAGTAACAGATGTGGCGTAAC 59.138 47.826 0.00 0.00 0.00 2.50
3206 5089 3.671008 AGTAACAGATGTGGCGTAACA 57.329 42.857 0.00 0.00 0.00 2.41
3207 5090 4.202245 AGTAACAGATGTGGCGTAACAT 57.798 40.909 4.99 4.99 43.47 2.71
3208 5091 3.932710 AGTAACAGATGTGGCGTAACATG 59.067 43.478 9.44 0.00 40.87 3.21
3209 5092 2.472695 ACAGATGTGGCGTAACATGT 57.527 45.000 9.44 0.00 40.87 3.21
3210 5093 3.603158 ACAGATGTGGCGTAACATGTA 57.397 42.857 0.00 0.00 40.87 2.29
3211 5094 4.137116 ACAGATGTGGCGTAACATGTAT 57.863 40.909 0.00 0.00 40.87 2.29
3212 5095 4.119862 ACAGATGTGGCGTAACATGTATC 58.880 43.478 0.00 0.00 40.87 2.24
3213 5096 4.119136 CAGATGTGGCGTAACATGTATCA 58.881 43.478 0.00 0.00 40.87 2.15
3214 5097 4.025730 CAGATGTGGCGTAACATGTATCAC 60.026 45.833 0.00 4.56 40.87 3.06
3215 5098 3.603158 TGTGGCGTAACATGTATCACT 57.397 42.857 0.00 0.00 0.00 3.41
3216 5099 3.932822 TGTGGCGTAACATGTATCACTT 58.067 40.909 0.00 0.00 0.00 3.16
3217 5100 3.930229 TGTGGCGTAACATGTATCACTTC 59.070 43.478 0.00 0.00 0.00 3.01
3218 5101 3.930229 GTGGCGTAACATGTATCACTTCA 59.070 43.478 0.00 0.00 0.00 3.02
3219 5102 4.570772 GTGGCGTAACATGTATCACTTCAT 59.429 41.667 0.00 0.00 0.00 2.57
3220 5103 5.064707 GTGGCGTAACATGTATCACTTCATT 59.935 40.000 0.00 0.00 0.00 2.57
3221 5104 5.293324 TGGCGTAACATGTATCACTTCATTC 59.707 40.000 0.00 0.00 0.00 2.67
3222 5105 5.293324 GGCGTAACATGTATCACTTCATTCA 59.707 40.000 0.00 0.00 0.00 2.57
3223 5106 6.017934 GGCGTAACATGTATCACTTCATTCAT 60.018 38.462 0.00 0.00 0.00 2.57
3224 5107 7.409697 GCGTAACATGTATCACTTCATTCATT 58.590 34.615 0.00 0.00 0.00 2.57
3225 5108 8.547894 GCGTAACATGTATCACTTCATTCATTA 58.452 33.333 0.00 0.00 0.00 1.90
3228 5111 7.502120 ACATGTATCACTTCATTCATTAGGC 57.498 36.000 0.00 0.00 0.00 3.93
3229 5112 7.285566 ACATGTATCACTTCATTCATTAGGCT 58.714 34.615 0.00 0.00 0.00 4.58
3230 5113 8.432013 ACATGTATCACTTCATTCATTAGGCTA 58.568 33.333 0.00 0.00 0.00 3.93
3231 5114 9.445878 CATGTATCACTTCATTCATTAGGCTAT 57.554 33.333 0.00 0.00 0.00 2.97
3237 5120 9.905713 TCACTTCATTCATTAGGCTATAAACTT 57.094 29.630 0.00 0.00 0.00 2.66
3245 5128 8.848474 TCATTAGGCTATAAACTTATCTTGCC 57.152 34.615 0.00 0.00 35.88 4.52
3246 5129 8.660435 TCATTAGGCTATAAACTTATCTTGCCT 58.340 33.333 18.81 18.81 42.08 4.75
3247 5130 9.289782 CATTAGGCTATAAACTTATCTTGCCTT 57.710 33.333 19.47 8.13 40.95 4.35
3248 5131 8.677148 TTAGGCTATAAACTTATCTTGCCTTG 57.323 34.615 19.47 0.00 40.95 3.61
3249 5132 6.900194 AGGCTATAAACTTATCTTGCCTTGA 58.100 36.000 13.36 0.00 39.33 3.02
3250 5133 7.521669 AGGCTATAAACTTATCTTGCCTTGAT 58.478 34.615 13.36 0.00 39.33 2.57
3251 5134 8.660435 AGGCTATAAACTTATCTTGCCTTGATA 58.340 33.333 13.36 0.00 39.33 2.15
3252 5135 9.454859 GGCTATAAACTTATCTTGCCTTGATAT 57.545 33.333 0.00 0.00 34.37 1.63
3256 5139 7.944729 AAACTTATCTTGCCTTGATATGTGT 57.055 32.000 0.00 0.00 35.98 3.72
3257 5140 6.932356 ACTTATCTTGCCTTGATATGTGTG 57.068 37.500 0.00 0.00 35.15 3.82
3258 5141 6.653020 ACTTATCTTGCCTTGATATGTGTGA 58.347 36.000 0.00 0.00 35.15 3.58
3259 5142 7.285566 ACTTATCTTGCCTTGATATGTGTGAT 58.714 34.615 0.00 0.00 35.15 3.06
3260 5143 8.432013 ACTTATCTTGCCTTGATATGTGTGATA 58.568 33.333 0.00 0.00 35.15 2.15
3261 5144 9.445878 CTTATCTTGCCTTGATATGTGTGATAT 57.554 33.333 0.00 0.00 0.00 1.63
3262 5145 9.797642 TTATCTTGCCTTGATATGTGTGATATT 57.202 29.630 0.00 0.00 0.00 1.28
3264 5147 8.607441 TCTTGCCTTGATATGTGTGATATTAC 57.393 34.615 0.00 0.00 0.00 1.89
3265 5148 8.432013 TCTTGCCTTGATATGTGTGATATTACT 58.568 33.333 0.00 0.00 0.00 2.24
3266 5149 8.607441 TTGCCTTGATATGTGTGATATTACTC 57.393 34.615 0.00 0.00 0.00 2.59
3267 5150 7.734942 TGCCTTGATATGTGTGATATTACTCA 58.265 34.615 5.04 5.04 0.00 3.41
3268 5151 8.377799 TGCCTTGATATGTGTGATATTACTCAT 58.622 33.333 16.42 16.42 38.11 2.90
3269 5152 9.875691 GCCTTGATATGTGTGATATTACTCATA 57.124 33.333 18.87 18.87 39.73 2.15
3298 5181 9.982651 AATAGTAACTAGCTATGTTACCACATG 57.017 33.333 25.92 0.00 46.31 3.21
3299 5182 6.281405 AGTAACTAGCTATGTTACCACATGC 58.719 40.000 25.92 11.98 46.31 4.06
3300 5183 4.073293 ACTAGCTATGTTACCACATGCC 57.927 45.455 0.00 0.00 43.92 4.40
3301 5184 3.711704 ACTAGCTATGTTACCACATGCCT 59.288 43.478 0.00 0.00 43.92 4.75
3302 5185 3.199880 AGCTATGTTACCACATGCCTC 57.800 47.619 0.00 0.00 43.92 4.70
3303 5186 2.774234 AGCTATGTTACCACATGCCTCT 59.226 45.455 0.00 0.00 43.92 3.69
3304 5187 3.200825 AGCTATGTTACCACATGCCTCTT 59.799 43.478 0.00 0.00 43.92 2.85
3305 5188 3.947834 GCTATGTTACCACATGCCTCTTT 59.052 43.478 0.00 0.00 43.92 2.52
3306 5189 4.399303 GCTATGTTACCACATGCCTCTTTT 59.601 41.667 0.00 0.00 43.92 2.27
3307 5190 5.105756 GCTATGTTACCACATGCCTCTTTTT 60.106 40.000 0.00 0.00 43.92 1.94
3308 5191 4.846779 TGTTACCACATGCCTCTTTTTC 57.153 40.909 0.00 0.00 0.00 2.29
3309 5192 4.469657 TGTTACCACATGCCTCTTTTTCT 58.530 39.130 0.00 0.00 0.00 2.52
3310 5193 4.892934 TGTTACCACATGCCTCTTTTTCTT 59.107 37.500 0.00 0.00 0.00 2.52
3311 5194 5.009610 TGTTACCACATGCCTCTTTTTCTTC 59.990 40.000 0.00 0.00 0.00 2.87
3312 5195 3.565307 ACCACATGCCTCTTTTTCTTCA 58.435 40.909 0.00 0.00 0.00 3.02
3313 5196 4.154942 ACCACATGCCTCTTTTTCTTCAT 58.845 39.130 0.00 0.00 0.00 2.57
3314 5197 4.590222 ACCACATGCCTCTTTTTCTTCATT 59.410 37.500 0.00 0.00 0.00 2.57
3315 5198 5.070847 ACCACATGCCTCTTTTTCTTCATTT 59.929 36.000 0.00 0.00 0.00 2.32
3316 5199 6.267471 ACCACATGCCTCTTTTTCTTCATTTA 59.733 34.615 0.00 0.00 0.00 1.40
3317 5200 7.038799 ACCACATGCCTCTTTTTCTTCATTTAT 60.039 33.333 0.00 0.00 0.00 1.40
3318 5201 7.820872 CCACATGCCTCTTTTTCTTCATTTATT 59.179 33.333 0.00 0.00 0.00 1.40
3319 5202 8.653338 CACATGCCTCTTTTTCTTCATTTATTG 58.347 33.333 0.00 0.00 0.00 1.90
3320 5203 7.332678 ACATGCCTCTTTTTCTTCATTTATTGC 59.667 33.333 0.00 0.00 0.00 3.56
3321 5204 6.996509 TGCCTCTTTTTCTTCATTTATTGCT 58.003 32.000 0.00 0.00 0.00 3.91
3322 5205 7.444299 TGCCTCTTTTTCTTCATTTATTGCTT 58.556 30.769 0.00 0.00 0.00 3.91
3323 5206 7.385752 TGCCTCTTTTTCTTCATTTATTGCTTG 59.614 33.333 0.00 0.00 0.00 4.01
3324 5207 7.386025 GCCTCTTTTTCTTCATTTATTGCTTGT 59.614 33.333 0.00 0.00 0.00 3.16
3325 5208 8.919661 CCTCTTTTTCTTCATTTATTGCTTGTC 58.080 33.333 0.00 0.00 0.00 3.18
3326 5209 9.467258 CTCTTTTTCTTCATTTATTGCTTGTCA 57.533 29.630 0.00 0.00 0.00 3.58
3327 5210 9.248291 TCTTTTTCTTCATTTATTGCTTGTCAC 57.752 29.630 0.00 0.00 0.00 3.67
3328 5211 8.939201 TTTTTCTTCATTTATTGCTTGTCACA 57.061 26.923 0.00 0.00 0.00 3.58
3329 5212 9.545105 TTTTTCTTCATTTATTGCTTGTCACAT 57.455 25.926 0.00 0.00 0.00 3.21
3330 5213 8.746922 TTTCTTCATTTATTGCTTGTCACATC 57.253 30.769 0.00 0.00 0.00 3.06
3331 5214 7.451501 TCTTCATTTATTGCTTGTCACATCA 57.548 32.000 0.00 0.00 0.00 3.07
3332 5215 8.058667 TCTTCATTTATTGCTTGTCACATCAT 57.941 30.769 0.00 0.00 0.00 2.45
3333 5216 8.186163 TCTTCATTTATTGCTTGTCACATCATC 58.814 33.333 0.00 0.00 0.00 2.92
3334 5217 7.634671 TCATTTATTGCTTGTCACATCATCT 57.365 32.000 0.00 0.00 0.00 2.90
3335 5218 8.735692 TCATTTATTGCTTGTCACATCATCTA 57.264 30.769 0.00 0.00 0.00 1.98
3336 5219 9.346005 TCATTTATTGCTTGTCACATCATCTAT 57.654 29.630 0.00 0.00 0.00 1.98
3337 5220 9.961265 CATTTATTGCTTGTCACATCATCTATT 57.039 29.630 0.00 0.00 0.00 1.73
3344 5227 9.399797 TGCTTGTCACATCATCTATTTTTATCT 57.600 29.630 0.00 0.00 0.00 1.98
3367 5250 9.815306 ATCTAGATATGTGTGATGTTACTACCT 57.185 33.333 2.53 0.00 0.00 3.08
3371 5254 9.368416 AGATATGTGTGATGTTACTACCTATGT 57.632 33.333 0.00 0.00 0.00 2.29
3372 5255 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
3375 5258 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
3376 5259 8.464404 TGTGTGATGTTACTACCTATGTTACTC 58.536 37.037 0.00 0.00 0.00 2.59
3377 5260 7.919621 GTGTGATGTTACTACCTATGTTACTCC 59.080 40.741 0.00 0.00 0.00 3.85
3378 5261 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
3379 5262 7.069085 GTGATGTTACTACCTATGTTACTCCCA 59.931 40.741 0.00 0.00 0.00 4.37
3380 5263 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
3381 5264 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
3382 5265 6.379133 TGTTACTACCTATGTTACTCCCACTG 59.621 42.308 0.00 0.00 0.00 3.66
3383 5266 4.944177 ACTACCTATGTTACTCCCACTGT 58.056 43.478 0.00 0.00 0.00 3.55
3384 5267 4.710375 ACTACCTATGTTACTCCCACTGTG 59.290 45.833 0.00 0.00 0.00 3.66
3385 5268 3.786553 ACCTATGTTACTCCCACTGTGA 58.213 45.455 9.86 0.00 0.00 3.58
3386 5269 3.769844 ACCTATGTTACTCCCACTGTGAG 59.230 47.826 9.86 1.95 35.92 3.51
3387 5270 3.769844 CCTATGTTACTCCCACTGTGAGT 59.230 47.826 9.86 8.31 44.85 3.41
3388 5271 4.954202 CCTATGTTACTCCCACTGTGAGTA 59.046 45.833 9.86 7.28 42.78 2.59
3389 5272 5.067936 CCTATGTTACTCCCACTGTGAGTAG 59.932 48.000 9.86 5.97 43.94 2.57
3390 5273 3.840991 TGTTACTCCCACTGTGAGTAGT 58.159 45.455 9.86 11.33 43.94 2.73
3391 5274 4.220724 TGTTACTCCCACTGTGAGTAGTT 58.779 43.478 9.86 0.00 43.94 2.24
3392 5275 4.652421 TGTTACTCCCACTGTGAGTAGTTT 59.348 41.667 9.86 0.00 43.94 2.66
3393 5276 5.129815 TGTTACTCCCACTGTGAGTAGTTTT 59.870 40.000 9.86 0.00 43.94 2.43
3394 5277 6.324512 TGTTACTCCCACTGTGAGTAGTTTTA 59.675 38.462 9.86 0.00 43.94 1.52
3395 5278 5.470047 ACTCCCACTGTGAGTAGTTTTAG 57.530 43.478 9.86 0.00 41.17 1.85
3396 5279 4.283722 ACTCCCACTGTGAGTAGTTTTAGG 59.716 45.833 9.86 0.00 41.17 2.69
3397 5280 3.007614 TCCCACTGTGAGTAGTTTTAGGC 59.992 47.826 9.86 0.00 0.00 3.93
3398 5281 3.244422 CCCACTGTGAGTAGTTTTAGGCA 60.244 47.826 9.86 0.00 0.00 4.75
3399 5282 4.385825 CCACTGTGAGTAGTTTTAGGCAA 58.614 43.478 9.86 0.00 0.00 4.52
3400 5283 4.213482 CCACTGTGAGTAGTTTTAGGCAAC 59.787 45.833 9.86 0.00 0.00 4.17
3401 5284 4.056050 ACTGTGAGTAGTTTTAGGCAACG 58.944 43.478 0.00 0.00 46.39 4.10
3402 5285 2.803956 TGTGAGTAGTTTTAGGCAACGC 59.196 45.455 0.00 0.00 46.39 4.84
3403 5286 2.063266 TGAGTAGTTTTAGGCAACGCG 58.937 47.619 3.53 3.53 46.39 6.01
3404 5287 2.288334 TGAGTAGTTTTAGGCAACGCGA 60.288 45.455 15.93 0.00 46.39 5.87
3405 5288 2.733026 GAGTAGTTTTAGGCAACGCGAA 59.267 45.455 15.93 0.00 46.39 4.70
3406 5289 3.332034 AGTAGTTTTAGGCAACGCGAAT 58.668 40.909 15.93 0.00 46.39 3.34
3407 5290 4.497300 AGTAGTTTTAGGCAACGCGAATA 58.503 39.130 15.93 0.00 46.39 1.75
3408 5291 4.931002 AGTAGTTTTAGGCAACGCGAATAA 59.069 37.500 15.93 0.95 46.39 1.40
3409 5292 4.074466 AGTTTTAGGCAACGCGAATAAC 57.926 40.909 15.93 5.38 46.39 1.89
3410 5293 3.499157 AGTTTTAGGCAACGCGAATAACA 59.501 39.130 15.93 0.00 46.39 2.41
3411 5294 4.155280 AGTTTTAGGCAACGCGAATAACAT 59.845 37.500 15.93 0.00 46.39 2.71
3412 5295 3.666883 TTAGGCAACGCGAATAACATG 57.333 42.857 15.93 0.00 46.39 3.21
3413 5296 1.448985 AGGCAACGCGAATAACATGT 58.551 45.000 15.93 0.00 46.39 3.21
3414 5297 1.130373 AGGCAACGCGAATAACATGTG 59.870 47.619 15.93 0.00 46.39 3.21
3415 5298 0.907171 GCAACGCGAATAACATGTGC 59.093 50.000 15.93 0.00 0.00 4.57
3416 5299 1.534028 CAACGCGAATAACATGTGCC 58.466 50.000 15.93 0.00 0.00 5.01
3417 5300 1.130373 CAACGCGAATAACATGTGCCT 59.870 47.619 15.93 0.00 0.00 4.75
3418 5301 2.303163 ACGCGAATAACATGTGCCTA 57.697 45.000 15.93 0.00 0.00 3.93
3419 5302 2.201732 ACGCGAATAACATGTGCCTAG 58.798 47.619 15.93 0.00 0.00 3.02
3420 5303 2.201732 CGCGAATAACATGTGCCTAGT 58.798 47.619 0.00 0.00 0.00 2.57
3421 5304 2.033747 CGCGAATAACATGTGCCTAGTG 60.034 50.000 0.00 0.00 0.00 2.74
3422 5305 2.936498 GCGAATAACATGTGCCTAGTGT 59.064 45.455 0.00 0.00 0.00 3.55
3423 5306 4.116961 GCGAATAACATGTGCCTAGTGTA 58.883 43.478 0.00 0.00 0.00 2.90
3424 5307 4.209288 GCGAATAACATGTGCCTAGTGTAG 59.791 45.833 0.00 0.00 0.00 2.74
3425 5308 5.588240 CGAATAACATGTGCCTAGTGTAGA 58.412 41.667 0.00 0.00 0.00 2.59
3426 5309 6.216569 CGAATAACATGTGCCTAGTGTAGAT 58.783 40.000 0.00 0.00 0.00 1.98
3427 5310 6.144563 CGAATAACATGTGCCTAGTGTAGATG 59.855 42.308 0.00 5.42 36.57 2.90
3428 5311 6.731292 ATAACATGTGCCTAGTGTAGATGA 57.269 37.500 0.00 0.00 34.53 2.92
3429 5312 5.620738 AACATGTGCCTAGTGTAGATGAT 57.379 39.130 0.00 0.72 34.53 2.45
3430 5313 4.953667 ACATGTGCCTAGTGTAGATGATG 58.046 43.478 0.00 0.00 34.53 3.07
3431 5314 4.406972 ACATGTGCCTAGTGTAGATGATGT 59.593 41.667 0.00 0.00 34.53 3.06
3432 5315 4.391405 TGTGCCTAGTGTAGATGATGTG 57.609 45.455 0.00 0.00 0.00 3.21
3433 5316 3.769300 TGTGCCTAGTGTAGATGATGTGT 59.231 43.478 0.00 0.00 0.00 3.72
3434 5317 4.142160 TGTGCCTAGTGTAGATGATGTGTC 60.142 45.833 0.00 0.00 0.00 3.67
3435 5318 4.098654 GTGCCTAGTGTAGATGATGTGTCT 59.901 45.833 0.00 0.00 0.00 3.41
3436 5319 5.299531 GTGCCTAGTGTAGATGATGTGTCTA 59.700 44.000 0.00 0.00 0.00 2.59
3437 5320 6.015856 GTGCCTAGTGTAGATGATGTGTCTAT 60.016 42.308 0.00 0.00 31.41 1.98
3438 5321 6.015940 TGCCTAGTGTAGATGATGTGTCTATG 60.016 42.308 0.00 0.00 31.41 2.23
3439 5322 6.207614 GCCTAGTGTAGATGATGTGTCTATGA 59.792 42.308 0.00 0.00 31.41 2.15
3440 5323 7.255625 GCCTAGTGTAGATGATGTGTCTATGAA 60.256 40.741 0.00 0.00 31.41 2.57
3441 5324 8.079203 CCTAGTGTAGATGATGTGTCTATGAAC 58.921 40.741 0.00 0.00 31.41 3.18
3442 5325 7.652524 AGTGTAGATGATGTGTCTATGAACT 57.347 36.000 0.00 0.00 31.41 3.01
3443 5326 7.487484 AGTGTAGATGATGTGTCTATGAACTG 58.513 38.462 0.00 0.00 31.41 3.16
3444 5327 6.699204 GTGTAGATGATGTGTCTATGAACTGG 59.301 42.308 0.00 0.00 31.41 4.00
3445 5328 4.701765 AGATGATGTGTCTATGAACTGGC 58.298 43.478 0.00 0.00 0.00 4.85
3446 5329 3.266510 TGATGTGTCTATGAACTGGCC 57.733 47.619 0.00 0.00 0.00 5.36
3447 5330 2.571202 TGATGTGTCTATGAACTGGCCA 59.429 45.455 4.71 4.71 0.00 5.36
3448 5331 2.472695 TGTGTCTATGAACTGGCCAC 57.527 50.000 0.00 0.00 0.00 5.01
3449 5332 1.696884 TGTGTCTATGAACTGGCCACA 59.303 47.619 0.00 0.00 0.00 4.17
3450 5333 2.305635 TGTGTCTATGAACTGGCCACAT 59.694 45.455 0.00 6.99 0.00 3.21
3451 5334 2.679837 GTGTCTATGAACTGGCCACATG 59.320 50.000 15.71 3.32 0.00 3.21
3452 5335 2.292267 GTCTATGAACTGGCCACATGG 58.708 52.381 15.71 13.23 38.53 3.66
3453 5336 1.212688 TCTATGAACTGGCCACATGGG 59.787 52.381 15.71 9.43 40.85 4.00
3454 5337 1.212688 CTATGAACTGGCCACATGGGA 59.787 52.381 15.71 0.00 40.01 4.37
3455 5338 0.033796 ATGAACTGGCCACATGGGAG 60.034 55.000 0.00 0.00 40.01 4.30
3456 5339 1.133181 TGAACTGGCCACATGGGAGA 61.133 55.000 0.00 0.00 40.01 3.71
3457 5340 0.038166 GAACTGGCCACATGGGAGAA 59.962 55.000 0.00 0.00 40.01 2.87
3458 5341 0.038744 AACTGGCCACATGGGAGAAG 59.961 55.000 0.00 0.00 40.01 2.85
3459 5342 1.751927 CTGGCCACATGGGAGAAGC 60.752 63.158 0.00 0.00 40.01 3.86
3460 5343 2.207501 CTGGCCACATGGGAGAAGCT 62.208 60.000 0.00 0.00 40.01 3.74
3461 5344 1.000396 GGCCACATGGGAGAAGCTT 60.000 57.895 0.00 0.00 40.01 3.74
3462 5345 1.034292 GGCCACATGGGAGAAGCTTC 61.034 60.000 19.11 19.11 40.01 3.86
3463 5346 0.322816 GCCACATGGGAGAAGCTTCA 60.323 55.000 27.57 8.65 40.01 3.02
3464 5347 1.684248 GCCACATGGGAGAAGCTTCAT 60.684 52.381 27.57 13.09 40.01 2.57
3465 5348 2.731572 CCACATGGGAGAAGCTTCATT 58.268 47.619 27.57 8.66 40.01 2.57
3466 5349 2.426024 CCACATGGGAGAAGCTTCATTG 59.574 50.000 27.57 17.70 40.01 2.82
3467 5350 3.349927 CACATGGGAGAAGCTTCATTGA 58.650 45.455 27.57 9.68 0.00 2.57
3468 5351 3.128242 CACATGGGAGAAGCTTCATTGAC 59.872 47.826 27.57 13.18 0.00 3.18
3469 5352 3.245016 ACATGGGAGAAGCTTCATTGACA 60.245 43.478 27.57 17.83 0.00 3.58
3470 5353 3.063510 TGGGAGAAGCTTCATTGACAG 57.936 47.619 27.57 0.00 0.00 3.51
3471 5354 2.290514 TGGGAGAAGCTTCATTGACAGG 60.291 50.000 27.57 0.00 0.00 4.00
3472 5355 2.290577 GGGAGAAGCTTCATTGACAGGT 60.291 50.000 27.57 3.93 0.00 4.00
3473 5356 3.006247 GGAGAAGCTTCATTGACAGGTC 58.994 50.000 27.57 12.76 0.00 3.85
3474 5357 3.006247 GAGAAGCTTCATTGACAGGTCC 58.994 50.000 27.57 0.00 0.00 4.46
3475 5358 2.641815 AGAAGCTTCATTGACAGGTCCT 59.358 45.455 27.57 0.00 0.00 3.85
3476 5359 2.486472 AGCTTCATTGACAGGTCCTG 57.514 50.000 17.88 17.88 37.52 3.86
3478 5361 2.107204 AGCTTCATTGACAGGTCCTGTT 59.893 45.455 25.46 7.45 45.44 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.076863 CCCCAAATGAGAACACGAGAC 58.923 52.381 0.00 0.00 0.00 3.36
1 2 1.697432 ACCCCAAATGAGAACACGAGA 59.303 47.619 0.00 0.00 0.00 4.04
3 4 1.890876 CACCCCAAATGAGAACACGA 58.109 50.000 0.00 0.00 0.00 4.35
13 466 4.759205 GGGAGCCGCACCCCAAAT 62.759 66.667 14.70 0.00 42.24 2.32
67 520 1.221466 ACGTGGTCGCACATGTTCAG 61.221 55.000 0.00 0.00 37.30 3.02
175 630 4.141869 ACAGCAGTAGTATGATGCATGTGA 60.142 41.667 2.46 0.00 40.22 3.58
176 631 4.124970 ACAGCAGTAGTATGATGCATGTG 58.875 43.478 2.46 0.00 40.22 3.21
177 632 4.412796 ACAGCAGTAGTATGATGCATGT 57.587 40.909 2.46 0.00 40.22 3.21
178 633 5.746307 AAACAGCAGTAGTATGATGCATG 57.254 39.130 2.46 0.00 40.22 4.06
179 634 6.764308 AAAAACAGCAGTAGTATGATGCAT 57.236 33.333 0.00 0.00 40.22 3.96
199 654 5.577554 GGTTTAGCCGTTCACAAAAGAAAAA 59.422 36.000 0.00 0.00 0.00 1.94
200 655 5.103687 GGTTTAGCCGTTCACAAAAGAAAA 58.896 37.500 0.00 0.00 0.00 2.29
201 656 4.674475 GGTTTAGCCGTTCACAAAAGAAA 58.326 39.130 0.00 0.00 0.00 2.52
202 657 4.295857 GGTTTAGCCGTTCACAAAAGAA 57.704 40.909 0.00 0.00 0.00 2.52
203 658 3.974871 GGTTTAGCCGTTCACAAAAGA 57.025 42.857 0.00 0.00 0.00 2.52
226 702 2.409975 ACGATCCGAAAATGACGTGTT 58.590 42.857 0.00 0.00 32.93 3.32
299 775 2.395360 GCGCGTGAACCATTGGCTA 61.395 57.895 8.43 0.00 0.00 3.93
342 822 3.320826 GCACCACATTTTGAGTACCCTTT 59.679 43.478 0.00 0.00 0.00 3.11
348 828 5.126222 TCTGTTTTGCACCACATTTTGAGTA 59.874 36.000 0.00 0.00 0.00 2.59
420 901 6.239458 GGTTTATCATTTTGTGGGAAGTTGGA 60.239 38.462 0.00 0.00 0.00 3.53
499 994 1.530646 GCGAGGTTAGAACGAGTACGG 60.531 57.143 0.00 0.00 44.46 4.02
522 1022 6.875076 TGGCTTAATAAGAAGTCAGACCTAC 58.125 40.000 3.88 0.00 36.14 3.18
561 2345 2.134354 TGGGGTGATGCAATCTATGGA 58.866 47.619 0.00 0.00 45.81 3.41
588 2372 3.951037 TGTGACGGCATAAAATATGGCTT 59.049 39.130 18.10 11.27 41.72 4.35
615 2403 4.361971 TCCGGGGAGACAGCTCGT 62.362 66.667 0.00 0.00 42.25 4.18
674 2495 8.903059 ATGGTGGTAATTATTTTCCCTTTACA 57.097 30.769 0.00 0.00 0.00 2.41
680 2501 8.625786 ACGTATATGGTGGTAATTATTTTCCC 57.374 34.615 0.00 0.00 0.00 3.97
877 2707 0.319040 CTGATACGATGTGGGCCGAG 60.319 60.000 0.00 0.00 0.00 4.63
916 2751 3.429141 CTGAGCTGGCCGTTGCAG 61.429 66.667 15.81 9.06 40.13 4.41
936 2771 0.320771 TGTCTTCTCTTCTTGCCCGC 60.321 55.000 0.00 0.00 0.00 6.13
970 2808 1.786049 CTGTGATCGATCTCCCGCGA 61.786 60.000 25.02 5.74 41.14 5.87
1440 3291 2.111878 GACTGCACCCACAGCACT 59.888 61.111 0.00 0.00 41.60 4.40
1623 3480 1.735700 CGGAACTGCTTCAGTATCGCA 60.736 52.381 0.00 0.00 44.62 5.10
2554 4411 2.612212 GACAAAGTTGCTTCGGTTGAGA 59.388 45.455 0.00 0.00 0.00 3.27
2583 4440 0.874175 TGTTTCCGACTCTGTGTGCG 60.874 55.000 0.00 0.00 0.00 5.34
2600 4469 2.435805 AGTTGCTCATACCCATCGATGT 59.564 45.455 23.27 9.10 0.00 3.06
2608 4477 2.027192 TGGACTTCAGTTGCTCATACCC 60.027 50.000 0.00 0.00 0.00 3.69
2661 4540 2.415857 GCATCTTCAGACTTCAGTGCTG 59.584 50.000 0.00 0.00 0.00 4.41
2763 4642 9.893305 CCGTCTTAAATTAAGTGACTCAATTTT 57.107 29.630 11.39 3.24 37.10 1.82
2764 4643 9.280174 TCCGTCTTAAATTAAGTGACTCAATTT 57.720 29.630 10.96 10.96 37.10 1.82
2765 4644 8.842358 TCCGTCTTAAATTAAGTGACTCAATT 57.158 30.769 11.97 0.00 37.10 2.32
2766 4645 7.549488 CCTCCGTCTTAAATTAAGTGACTCAAT 59.451 37.037 11.97 0.00 37.10 2.57
2767 4646 6.872020 CCTCCGTCTTAAATTAAGTGACTCAA 59.128 38.462 11.97 0.00 37.10 3.02
2768 4647 6.209986 TCCTCCGTCTTAAATTAAGTGACTCA 59.790 38.462 11.97 0.00 37.10 3.41
2769 4648 6.628185 TCCTCCGTCTTAAATTAAGTGACTC 58.372 40.000 11.97 0.62 37.10 3.36
2770 4649 6.600882 TCCTCCGTCTTAAATTAAGTGACT 57.399 37.500 11.97 0.00 37.10 3.41
2771 4650 6.872547 ACTTCCTCCGTCTTAAATTAAGTGAC 59.127 38.462 11.97 4.30 37.10 3.67
2772 4651 7.001099 ACTTCCTCCGTCTTAAATTAAGTGA 57.999 36.000 11.97 7.23 37.10 3.41
2773 4652 8.767478 TTACTTCCTCCGTCTTAAATTAAGTG 57.233 34.615 11.97 6.69 37.10 3.16
2784 4663 8.804204 CCAGTATAATTATTACTTCCTCCGTCT 58.196 37.037 2.68 0.00 0.00 4.18
2785 4664 8.583296 ACCAGTATAATTATTACTTCCTCCGTC 58.417 37.037 2.68 0.00 0.00 4.79
2786 4665 8.488308 ACCAGTATAATTATTACTTCCTCCGT 57.512 34.615 2.68 0.00 0.00 4.69
2787 4666 8.804204 AGACCAGTATAATTATTACTTCCTCCG 58.196 37.037 2.68 0.00 0.00 4.63
2791 4670 9.978044 ACGAAGACCAGTATAATTATTACTTCC 57.022 33.333 2.68 0.00 0.00 3.46
2794 4673 9.257651 GCAACGAAGACCAGTATAATTATTACT 57.742 33.333 2.68 3.04 0.00 2.24
2795 4674 9.037737 TGCAACGAAGACCAGTATAATTATTAC 57.962 33.333 2.68 0.83 0.00 1.89
2796 4675 9.772973 ATGCAACGAAGACCAGTATAATTATTA 57.227 29.630 2.68 0.00 0.00 0.98
2797 4676 8.559536 CATGCAACGAAGACCAGTATAATTATT 58.440 33.333 2.68 0.00 0.00 1.40
2798 4677 7.931407 TCATGCAACGAAGACCAGTATAATTAT 59.069 33.333 2.97 2.97 0.00 1.28
2799 4678 7.269316 TCATGCAACGAAGACCAGTATAATTA 58.731 34.615 0.00 0.00 0.00 1.40
2800 4679 6.112734 TCATGCAACGAAGACCAGTATAATT 58.887 36.000 0.00 0.00 0.00 1.40
2801 4680 5.670485 TCATGCAACGAAGACCAGTATAAT 58.330 37.500 0.00 0.00 0.00 1.28
2802 4681 5.079689 TCATGCAACGAAGACCAGTATAA 57.920 39.130 0.00 0.00 0.00 0.98
2803 4682 4.729227 TCATGCAACGAAGACCAGTATA 57.271 40.909 0.00 0.00 0.00 1.47
2804 4683 3.610040 TCATGCAACGAAGACCAGTAT 57.390 42.857 0.00 0.00 0.00 2.12
2805 4684 3.610040 ATCATGCAACGAAGACCAGTA 57.390 42.857 0.00 0.00 0.00 2.74
2806 4685 2.479566 ATCATGCAACGAAGACCAGT 57.520 45.000 0.00 0.00 0.00 4.00
2807 4686 5.490139 AAATATCATGCAACGAAGACCAG 57.510 39.130 0.00 0.00 0.00 4.00
2808 4687 5.182950 ACAAAATATCATGCAACGAAGACCA 59.817 36.000 0.00 0.00 0.00 4.02
2809 4688 5.640732 ACAAAATATCATGCAACGAAGACC 58.359 37.500 0.00 0.00 0.00 3.85
2818 4697 9.585099 GGATCAAAGTAAACAAAATATCATGCA 57.415 29.630 0.00 0.00 0.00 3.96
2834 4713 8.918202 ACAAACATAACAAGAGGATCAAAGTA 57.082 30.769 0.00 0.00 37.82 2.24
2835 4714 7.823745 ACAAACATAACAAGAGGATCAAAGT 57.176 32.000 0.00 0.00 37.82 2.66
2864 4743 1.690893 TGCCTGGCTCTCTGTATGATC 59.309 52.381 21.03 0.00 0.00 2.92
2865 4744 1.693062 CTGCCTGGCTCTCTGTATGAT 59.307 52.381 21.03 0.00 0.00 2.45
2929 4808 6.270000 GGCCCCAAAATTAGGCTCTTAATAAT 59.730 38.462 0.00 0.00 46.31 1.28
2951 4834 1.641123 TTGCTAGCGCTTTAACGGCC 61.641 55.000 18.68 0.00 36.97 6.13
2965 4848 1.902508 CACAGGAGAGAAGGGTTGCTA 59.097 52.381 0.00 0.00 0.00 3.49
2975 4858 2.235650 CTCAGGCATTTCACAGGAGAGA 59.764 50.000 0.00 0.00 0.00 3.10
2977 4860 1.339438 GCTCAGGCATTTCACAGGAGA 60.339 52.381 0.00 0.00 38.54 3.71
2995 4878 1.812686 TAACGGTGTCTTCGCTGGCT 61.813 55.000 0.00 0.00 35.02 4.75
3008 4891 2.754375 CTTGCTGGGGGTAACGGT 59.246 61.111 0.00 0.00 37.60 4.83
3011 4894 2.033602 ACGCTTGCTGGGGGTAAC 59.966 61.111 0.00 0.00 0.00 2.50
3017 4900 0.456653 GCATTTACACGCTTGCTGGG 60.457 55.000 0.00 0.00 32.41 4.45
3023 4906 0.240945 GGTGCTGCATTTACACGCTT 59.759 50.000 5.27 0.00 35.11 4.68
3053 4936 2.398554 CGCTGTGGTCCCCGAATTG 61.399 63.158 0.00 0.00 0.00 2.32
3054 4937 2.046314 CGCTGTGGTCCCCGAATT 60.046 61.111 0.00 0.00 0.00 2.17
3065 4948 1.588674 TTTGTGGTAGTTCCGCTGTG 58.411 50.000 0.77 0.00 46.10 3.66
3069 4952 2.095919 GTGACATTTGTGGTAGTTCCGC 60.096 50.000 0.00 0.00 46.12 5.54
3071 4954 2.095919 GCGTGACATTTGTGGTAGTTCC 60.096 50.000 0.00 0.00 0.00 3.62
3077 4960 3.128589 GGATATTGCGTGACATTTGTGGT 59.871 43.478 0.00 0.00 0.00 4.16
3086 4969 4.868171 TCTAAACTGTGGATATTGCGTGAC 59.132 41.667 0.00 0.00 0.00 3.67
3094 4977 5.661312 TGTGGCTAGTCTAAACTGTGGATAT 59.339 40.000 0.00 0.00 36.92 1.63
3098 4981 3.678056 TGTGGCTAGTCTAAACTGTGG 57.322 47.619 0.00 0.00 36.92 4.17
3099 4982 4.393062 CCATTGTGGCTAGTCTAAACTGTG 59.607 45.833 0.00 0.00 36.92 3.66
3109 4992 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
3110 4993 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
3111 4994 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
3112 4995 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
3113 4996 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
3114 4997 6.235231 ACTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
3115 4998 8.008513 ACTACTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
3116 4999 9.705103 TTACTACTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
3117 5000 9.962783 GTTACTACTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
3118 5001 9.705103 TGTTACTACTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
3119 5002 9.878737 ATGTTACTACTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
3120 5003 9.128404 CATGTTACTACTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
3121 5004 8.081025 GCATGTTACTACTCTATGTTACTACCC 58.919 40.741 0.00 0.00 0.00 3.69
3122 5005 8.081025 GGCATGTTACTACTCTATGTTACTACC 58.919 40.741 0.00 0.00 0.00 3.18
3123 5006 8.081025 GGGCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
3124 5007 7.781219 TGGGCATGTTACTACTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
3125 5008 6.610020 TGGGCATGTTACTACTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
3126 5009 6.812998 TGGGCATGTTACTACTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
3127 5010 7.441836 CATGGGCATGTTACTACTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
3128 5011 5.950544 TGGGCATGTTACTACTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
3129 5012 5.858381 CATGGGCATGTTACTACTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
3143 5026 5.858381 ACATAGAGTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
3144 5027 6.500589 AACATAGAGTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
3145 5028 5.950544 AACATAGAGTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
3146 5029 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
3171 5054 9.435570 ACATCTGTTACTACCCACTATAAAGAT 57.564 33.333 0.00 0.00 0.00 2.40
3172 5055 8.692710 CACATCTGTTACTACCCACTATAAAGA 58.307 37.037 0.00 0.00 0.00 2.52
3173 5056 7.926555 CCACATCTGTTACTACCCACTATAAAG 59.073 40.741 0.00 0.00 0.00 1.85
3174 5057 7.634210 GCCACATCTGTTACTACCCACTATAAA 60.634 40.741 0.00 0.00 0.00 1.40
3175 5058 6.183360 GCCACATCTGTTACTACCCACTATAA 60.183 42.308 0.00 0.00 0.00 0.98
3176 5059 5.303589 GCCACATCTGTTACTACCCACTATA 59.696 44.000 0.00 0.00 0.00 1.31
3177 5060 4.101119 GCCACATCTGTTACTACCCACTAT 59.899 45.833 0.00 0.00 0.00 2.12
3178 5061 3.449737 GCCACATCTGTTACTACCCACTA 59.550 47.826 0.00 0.00 0.00 2.74
3179 5062 2.236395 GCCACATCTGTTACTACCCACT 59.764 50.000 0.00 0.00 0.00 4.00
3180 5063 2.629051 GCCACATCTGTTACTACCCAC 58.371 52.381 0.00 0.00 0.00 4.61
3181 5064 1.206132 CGCCACATCTGTTACTACCCA 59.794 52.381 0.00 0.00 0.00 4.51
3182 5065 1.206371 ACGCCACATCTGTTACTACCC 59.794 52.381 0.00 0.00 0.00 3.69
3183 5066 2.667473 ACGCCACATCTGTTACTACC 57.333 50.000 0.00 0.00 0.00 3.18
3184 5067 4.487948 TGTTACGCCACATCTGTTACTAC 58.512 43.478 0.00 0.00 0.00 2.73
3185 5068 4.787260 TGTTACGCCACATCTGTTACTA 57.213 40.909 0.00 0.00 0.00 1.82
3186 5069 3.671008 TGTTACGCCACATCTGTTACT 57.329 42.857 0.00 0.00 0.00 2.24
3187 5070 3.682858 ACATGTTACGCCACATCTGTTAC 59.317 43.478 0.00 0.00 35.03 2.50
3188 5071 3.932822 ACATGTTACGCCACATCTGTTA 58.067 40.909 0.00 0.00 35.03 2.41
3189 5072 2.778299 ACATGTTACGCCACATCTGTT 58.222 42.857 0.00 0.00 35.03 3.16
3190 5073 2.472695 ACATGTTACGCCACATCTGT 57.527 45.000 0.00 0.00 35.03 3.41
3191 5074 4.025730 GTGATACATGTTACGCCACATCTG 60.026 45.833 2.30 0.00 35.03 2.90
3192 5075 4.119862 GTGATACATGTTACGCCACATCT 58.880 43.478 2.30 0.00 35.03 2.90
3193 5076 4.119862 AGTGATACATGTTACGCCACATC 58.880 43.478 2.30 0.00 35.03 3.06
3194 5077 4.137116 AGTGATACATGTTACGCCACAT 57.863 40.909 2.30 0.00 37.93 3.21
3195 5078 3.603158 AGTGATACATGTTACGCCACA 57.397 42.857 2.30 0.00 0.00 4.17
3196 5079 3.930229 TGAAGTGATACATGTTACGCCAC 59.070 43.478 2.30 5.74 0.00 5.01
3197 5080 4.195225 TGAAGTGATACATGTTACGCCA 57.805 40.909 2.30 2.85 0.00 5.69
3198 5081 5.293324 TGAATGAAGTGATACATGTTACGCC 59.707 40.000 2.30 0.40 0.00 5.68
3199 5082 6.344572 TGAATGAAGTGATACATGTTACGC 57.655 37.500 2.30 5.54 0.00 4.42
3202 5085 9.056005 GCCTAATGAATGAAGTGATACATGTTA 57.944 33.333 2.30 0.00 0.00 2.41
3203 5086 7.776969 AGCCTAATGAATGAAGTGATACATGTT 59.223 33.333 2.30 0.00 0.00 2.71
3204 5087 7.285566 AGCCTAATGAATGAAGTGATACATGT 58.714 34.615 2.69 2.69 0.00 3.21
3205 5088 7.741027 AGCCTAATGAATGAAGTGATACATG 57.259 36.000 0.00 0.00 0.00 3.21
3211 5094 9.905713 AAGTTTATAGCCTAATGAATGAAGTGA 57.094 29.630 0.00 0.00 0.00 3.41
3219 5102 9.284968 GGCAAGATAAGTTTATAGCCTAATGAA 57.715 33.333 11.91 0.00 34.99 2.57
3220 5103 8.660435 AGGCAAGATAAGTTTATAGCCTAATGA 58.340 33.333 16.78 0.00 40.83 2.57
3221 5104 8.854614 AGGCAAGATAAGTTTATAGCCTAATG 57.145 34.615 16.78 0.00 40.83 1.90
3222 5105 9.289782 CAAGGCAAGATAAGTTTATAGCCTAAT 57.710 33.333 17.82 7.54 41.30 1.73
3223 5106 8.491134 TCAAGGCAAGATAAGTTTATAGCCTAA 58.509 33.333 17.82 11.04 41.30 2.69
3224 5107 8.029782 TCAAGGCAAGATAAGTTTATAGCCTA 57.970 34.615 17.82 7.54 41.30 3.93
3225 5108 6.900194 TCAAGGCAAGATAAGTTTATAGCCT 58.100 36.000 14.34 14.34 42.65 4.58
3226 5109 7.751768 ATCAAGGCAAGATAAGTTTATAGCC 57.248 36.000 11.51 11.51 36.61 3.93
3230 5113 9.632638 ACACATATCAAGGCAAGATAAGTTTAT 57.367 29.630 4.91 0.00 30.14 1.40
3231 5114 8.892723 CACACATATCAAGGCAAGATAAGTTTA 58.107 33.333 4.91 0.00 30.14 2.01
3232 5115 7.611467 TCACACATATCAAGGCAAGATAAGTTT 59.389 33.333 4.91 0.00 30.14 2.66
3233 5116 7.112122 TCACACATATCAAGGCAAGATAAGTT 58.888 34.615 4.91 0.00 30.14 2.66
3234 5117 6.653020 TCACACATATCAAGGCAAGATAAGT 58.347 36.000 3.53 3.02 32.06 2.24
3235 5118 7.741027 ATCACACATATCAAGGCAAGATAAG 57.259 36.000 3.53 2.48 32.22 1.73
3236 5119 9.797642 AATATCACACATATCAAGGCAAGATAA 57.202 29.630 3.53 0.00 32.22 1.75
3238 5121 9.224267 GTAATATCACACATATCAAGGCAAGAT 57.776 33.333 0.00 0.00 0.00 2.40
3239 5122 8.432013 AGTAATATCACACATATCAAGGCAAGA 58.568 33.333 0.00 0.00 0.00 3.02
3240 5123 8.613060 AGTAATATCACACATATCAAGGCAAG 57.387 34.615 0.00 0.00 0.00 4.01
3241 5124 8.210265 TGAGTAATATCACACATATCAAGGCAA 58.790 33.333 0.00 0.00 0.00 4.52
3242 5125 7.734942 TGAGTAATATCACACATATCAAGGCA 58.265 34.615 0.00 0.00 0.00 4.75
3243 5126 8.783833 ATGAGTAATATCACACATATCAAGGC 57.216 34.615 0.00 0.00 29.42 4.35
3288 5171 5.009610 TGAAGAAAAAGAGGCATGTGGTAAC 59.990 40.000 0.00 0.00 0.00 2.50
3289 5172 5.136828 TGAAGAAAAAGAGGCATGTGGTAA 58.863 37.500 0.00 0.00 0.00 2.85
3290 5173 4.724399 TGAAGAAAAAGAGGCATGTGGTA 58.276 39.130 0.00 0.00 0.00 3.25
3291 5174 3.565307 TGAAGAAAAAGAGGCATGTGGT 58.435 40.909 0.00 0.00 0.00 4.16
3292 5175 4.796038 ATGAAGAAAAAGAGGCATGTGG 57.204 40.909 0.00 0.00 0.00 4.17
3293 5176 8.653338 CAATAAATGAAGAAAAAGAGGCATGTG 58.347 33.333 0.00 0.00 0.00 3.21
3294 5177 7.332678 GCAATAAATGAAGAAAAAGAGGCATGT 59.667 33.333 0.00 0.00 0.00 3.21
3295 5178 7.548075 AGCAATAAATGAAGAAAAAGAGGCATG 59.452 33.333 0.00 0.00 0.00 4.06
3296 5179 7.618137 AGCAATAAATGAAGAAAAAGAGGCAT 58.382 30.769 0.00 0.00 0.00 4.40
3297 5180 6.996509 AGCAATAAATGAAGAAAAAGAGGCA 58.003 32.000 0.00 0.00 0.00 4.75
3298 5181 7.386025 ACAAGCAATAAATGAAGAAAAAGAGGC 59.614 33.333 0.00 0.00 0.00 4.70
3299 5182 8.822652 ACAAGCAATAAATGAAGAAAAAGAGG 57.177 30.769 0.00 0.00 0.00 3.69
3300 5183 9.467258 TGACAAGCAATAAATGAAGAAAAAGAG 57.533 29.630 0.00 0.00 0.00 2.85
3301 5184 9.248291 GTGACAAGCAATAAATGAAGAAAAAGA 57.752 29.630 0.00 0.00 0.00 2.52
3302 5185 9.033481 TGTGACAAGCAATAAATGAAGAAAAAG 57.967 29.630 0.00 0.00 0.00 2.27
3303 5186 8.939201 TGTGACAAGCAATAAATGAAGAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
3304 5187 9.195411 GATGTGACAAGCAATAAATGAAGAAAA 57.805 29.630 0.00 0.00 0.00 2.29
3305 5188 8.358895 TGATGTGACAAGCAATAAATGAAGAAA 58.641 29.630 0.00 0.00 0.00 2.52
3306 5189 7.884257 TGATGTGACAAGCAATAAATGAAGAA 58.116 30.769 0.00 0.00 0.00 2.52
3307 5190 7.451501 TGATGTGACAAGCAATAAATGAAGA 57.548 32.000 0.00 0.00 0.00 2.87
3308 5191 8.188799 AGATGATGTGACAAGCAATAAATGAAG 58.811 33.333 0.00 0.00 0.00 3.02
3309 5192 8.058667 AGATGATGTGACAAGCAATAAATGAA 57.941 30.769 0.00 0.00 0.00 2.57
3310 5193 7.634671 AGATGATGTGACAAGCAATAAATGA 57.365 32.000 0.00 0.00 0.00 2.57
3311 5194 9.961265 AATAGATGATGTGACAAGCAATAAATG 57.039 29.630 0.00 0.00 0.00 2.32
3318 5201 9.399797 AGATAAAAATAGATGATGTGACAAGCA 57.600 29.630 0.00 0.00 0.00 3.91
3341 5224 9.815306 AGGTAGTAACATCACACATATCTAGAT 57.185 33.333 10.73 10.73 0.00 1.98
3345 5228 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
3346 5229 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
3349 5232 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
3350 5233 8.357290 AGTAACATAGGTAGTAACATCACACA 57.643 34.615 0.00 0.00 0.00 3.72
3351 5234 7.919621 GGAGTAACATAGGTAGTAACATCACAC 59.080 40.741 0.00 0.00 0.00 3.82
3352 5235 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
3353 5236 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
3354 5237 7.069085 GTGGGAGTAACATAGGTAGTAACATCA 59.931 40.741 0.00 0.00 0.00 3.07
3355 5238 7.287235 AGTGGGAGTAACATAGGTAGTAACATC 59.713 40.741 0.00 0.00 0.00 3.06
3356 5239 7.069578 CAGTGGGAGTAACATAGGTAGTAACAT 59.930 40.741 0.00 0.00 0.00 2.71
3357 5240 6.379133 CAGTGGGAGTAACATAGGTAGTAACA 59.621 42.308 0.00 0.00 0.00 2.41
3358 5241 6.379417 ACAGTGGGAGTAACATAGGTAGTAAC 59.621 42.308 0.00 0.00 0.00 2.50
3359 5242 6.379133 CACAGTGGGAGTAACATAGGTAGTAA 59.621 42.308 0.00 0.00 0.00 2.24
3360 5243 5.889853 CACAGTGGGAGTAACATAGGTAGTA 59.110 44.000 0.00 0.00 0.00 1.82
3361 5244 4.710375 CACAGTGGGAGTAACATAGGTAGT 59.290 45.833 0.00 0.00 0.00 2.73
3362 5245 4.954202 TCACAGTGGGAGTAACATAGGTAG 59.046 45.833 0.00 0.00 0.00 3.18
3363 5246 4.938028 TCACAGTGGGAGTAACATAGGTA 58.062 43.478 0.00 0.00 0.00 3.08
3364 5247 3.769844 CTCACAGTGGGAGTAACATAGGT 59.230 47.826 14.67 0.00 0.00 3.08
3365 5248 3.769844 ACTCACAGTGGGAGTAACATAGG 59.230 47.826 26.70 0.00 43.50 2.57
3366 5249 5.652891 ACTACTCACAGTGGGAGTAACATAG 59.347 44.000 30.19 23.52 44.69 2.23
3367 5250 5.577100 ACTACTCACAGTGGGAGTAACATA 58.423 41.667 30.19 14.42 44.69 2.29
3368 5251 4.417437 ACTACTCACAGTGGGAGTAACAT 58.583 43.478 30.19 18.56 44.69 2.71
3369 5252 3.840991 ACTACTCACAGTGGGAGTAACA 58.159 45.455 30.19 15.10 44.69 2.41
3370 5253 4.868314 AACTACTCACAGTGGGAGTAAC 57.132 45.455 30.19 0.00 44.69 2.50
3371 5254 5.881923 AAAACTACTCACAGTGGGAGTAA 57.118 39.130 30.19 17.17 44.69 2.24
3372 5255 5.479375 CCTAAAACTACTCACAGTGGGAGTA 59.521 44.000 29.07 29.07 43.50 2.59
3373 5256 4.283722 CCTAAAACTACTCACAGTGGGAGT 59.716 45.833 29.99 29.99 46.71 3.85
3374 5257 4.822026 CCTAAAACTACTCACAGTGGGAG 58.178 47.826 21.15 21.15 38.36 4.30
3375 5258 3.007614 GCCTAAAACTACTCACAGTGGGA 59.992 47.826 7.67 0.00 30.19 4.37
3376 5259 3.244422 TGCCTAAAACTACTCACAGTGGG 60.244 47.826 0.00 0.00 30.19 4.61
3377 5260 4.002906 TGCCTAAAACTACTCACAGTGG 57.997 45.455 0.00 0.00 32.47 4.00
3378 5261 4.084537 CGTTGCCTAAAACTACTCACAGTG 60.085 45.833 0.00 0.00 0.00 3.66
3379 5262 4.056050 CGTTGCCTAAAACTACTCACAGT 58.944 43.478 0.00 0.00 0.00 3.55
3380 5263 3.120649 GCGTTGCCTAAAACTACTCACAG 60.121 47.826 0.00 0.00 0.00 3.66
3381 5264 2.803956 GCGTTGCCTAAAACTACTCACA 59.196 45.455 0.00 0.00 0.00 3.58
3382 5265 2.159881 CGCGTTGCCTAAAACTACTCAC 60.160 50.000 0.00 0.00 0.00 3.51
3383 5266 2.063266 CGCGTTGCCTAAAACTACTCA 58.937 47.619 0.00 0.00 0.00 3.41
3384 5267 2.331194 TCGCGTTGCCTAAAACTACTC 58.669 47.619 5.77 0.00 0.00 2.59
3385 5268 2.443887 TCGCGTTGCCTAAAACTACT 57.556 45.000 5.77 0.00 0.00 2.57
3386 5269 3.734776 ATTCGCGTTGCCTAAAACTAC 57.265 42.857 5.77 0.00 0.00 2.73
3387 5270 4.689812 TGTTATTCGCGTTGCCTAAAACTA 59.310 37.500 5.77 0.00 0.00 2.24
3388 5271 3.499157 TGTTATTCGCGTTGCCTAAAACT 59.501 39.130 5.77 0.00 0.00 2.66
3389 5272 3.812656 TGTTATTCGCGTTGCCTAAAAC 58.187 40.909 5.77 1.83 0.00 2.43
3390 5273 4.083217 ACATGTTATTCGCGTTGCCTAAAA 60.083 37.500 5.77 0.00 0.00 1.52
3391 5274 3.437395 ACATGTTATTCGCGTTGCCTAAA 59.563 39.130 5.77 0.00 0.00 1.85
3392 5275 3.004171 ACATGTTATTCGCGTTGCCTAA 58.996 40.909 5.77 0.00 0.00 2.69
3393 5276 2.350192 CACATGTTATTCGCGTTGCCTA 59.650 45.455 5.77 0.00 0.00 3.93
3394 5277 1.130373 CACATGTTATTCGCGTTGCCT 59.870 47.619 5.77 0.00 0.00 4.75
3395 5278 1.534028 CACATGTTATTCGCGTTGCC 58.466 50.000 5.77 0.00 0.00 4.52
3396 5279 0.907171 GCACATGTTATTCGCGTTGC 59.093 50.000 5.77 0.00 0.00 4.17
3397 5280 1.130373 AGGCACATGTTATTCGCGTTG 59.870 47.619 5.77 0.00 0.00 4.10
3398 5281 1.448985 AGGCACATGTTATTCGCGTT 58.551 45.000 5.77 0.00 0.00 4.84
3399 5282 2.201732 CTAGGCACATGTTATTCGCGT 58.798 47.619 5.77 0.08 0.00 6.01
3400 5283 2.033747 CACTAGGCACATGTTATTCGCG 60.034 50.000 0.00 0.00 0.00 5.87
3401 5284 2.936498 ACACTAGGCACATGTTATTCGC 59.064 45.455 0.00 0.00 0.00 4.70
3402 5285 5.588240 TCTACACTAGGCACATGTTATTCG 58.412 41.667 0.00 0.00 0.00 3.34
3403 5286 7.210174 TCATCTACACTAGGCACATGTTATTC 58.790 38.462 0.00 0.00 0.00 1.75
3404 5287 7.124573 TCATCTACACTAGGCACATGTTATT 57.875 36.000 0.00 0.00 0.00 1.40
3405 5288 6.731292 TCATCTACACTAGGCACATGTTAT 57.269 37.500 0.00 0.00 0.00 1.89
3406 5289 6.098266 ACATCATCTACACTAGGCACATGTTA 59.902 38.462 0.00 0.00 0.00 2.41
3407 5290 5.104776 ACATCATCTACACTAGGCACATGTT 60.105 40.000 0.00 0.00 0.00 2.71
3408 5291 4.406972 ACATCATCTACACTAGGCACATGT 59.593 41.667 0.00 0.00 0.00 3.21
3409 5292 4.748600 CACATCATCTACACTAGGCACATG 59.251 45.833 0.00 0.00 0.00 3.21
3410 5293 4.406972 ACACATCATCTACACTAGGCACAT 59.593 41.667 0.00 0.00 0.00 3.21
3411 5294 3.769300 ACACATCATCTACACTAGGCACA 59.231 43.478 0.00 0.00 0.00 4.57
3412 5295 4.098654 AGACACATCATCTACACTAGGCAC 59.901 45.833 0.00 0.00 0.00 5.01
3413 5296 4.281657 AGACACATCATCTACACTAGGCA 58.718 43.478 0.00 0.00 0.00 4.75
3414 5297 4.927978 AGACACATCATCTACACTAGGC 57.072 45.455 0.00 0.00 0.00 3.93
3415 5298 7.751768 TCATAGACACATCATCTACACTAGG 57.248 40.000 0.00 0.00 31.54 3.02
3416 5299 8.845227 AGTTCATAGACACATCATCTACACTAG 58.155 37.037 0.00 0.00 31.54 2.57
3417 5300 8.624776 CAGTTCATAGACACATCATCTACACTA 58.375 37.037 0.00 0.00 31.54 2.74
3418 5301 7.417229 CCAGTTCATAGACACATCATCTACACT 60.417 40.741 0.00 0.00 31.54 3.55
3419 5302 6.699204 CCAGTTCATAGACACATCATCTACAC 59.301 42.308 0.00 0.00 31.54 2.90
3420 5303 6.683861 GCCAGTTCATAGACACATCATCTACA 60.684 42.308 0.00 0.00 31.54 2.74
3421 5304 5.694006 GCCAGTTCATAGACACATCATCTAC 59.306 44.000 0.00 0.00 31.54 2.59
3422 5305 5.221521 GGCCAGTTCATAGACACATCATCTA 60.222 44.000 0.00 0.00 33.27 1.98
3423 5306 4.444022 GGCCAGTTCATAGACACATCATCT 60.444 45.833 0.00 0.00 0.00 2.90
3424 5307 3.812053 GGCCAGTTCATAGACACATCATC 59.188 47.826 0.00 0.00 0.00 2.92
3425 5308 3.200605 TGGCCAGTTCATAGACACATCAT 59.799 43.478 0.00 0.00 0.00 2.45
3426 5309 2.571202 TGGCCAGTTCATAGACACATCA 59.429 45.455 0.00 0.00 0.00 3.07
3427 5310 2.939103 GTGGCCAGTTCATAGACACATC 59.061 50.000 5.11 0.00 0.00 3.06
3428 5311 2.305635 TGTGGCCAGTTCATAGACACAT 59.694 45.455 5.11 0.00 33.03 3.21
3429 5312 1.696884 TGTGGCCAGTTCATAGACACA 59.303 47.619 5.11 0.00 35.29 3.72
3430 5313 2.472695 TGTGGCCAGTTCATAGACAC 57.527 50.000 5.11 0.00 0.00 3.67
3431 5314 2.356022 CCATGTGGCCAGTTCATAGACA 60.356 50.000 5.11 0.00 0.00 3.41
3432 5315 2.292267 CCATGTGGCCAGTTCATAGAC 58.708 52.381 5.11 0.00 0.00 2.59
3433 5316 1.212688 CCCATGTGGCCAGTTCATAGA 59.787 52.381 5.11 0.00 0.00 1.98
3434 5317 1.212688 TCCCATGTGGCCAGTTCATAG 59.787 52.381 5.11 0.00 0.00 2.23
3435 5318 1.212688 CTCCCATGTGGCCAGTTCATA 59.787 52.381 5.11 0.00 0.00 2.15
3436 5319 0.033796 CTCCCATGTGGCCAGTTCAT 60.034 55.000 5.11 2.89 0.00 2.57
3437 5320 1.133181 TCTCCCATGTGGCCAGTTCA 61.133 55.000 5.11 0.00 0.00 3.18
3438 5321 0.038166 TTCTCCCATGTGGCCAGTTC 59.962 55.000 5.11 0.00 0.00 3.01
3439 5322 0.038744 CTTCTCCCATGTGGCCAGTT 59.961 55.000 5.11 0.00 0.00 3.16
3440 5323 1.687612 CTTCTCCCATGTGGCCAGT 59.312 57.895 5.11 0.00 0.00 4.00
3441 5324 1.751927 GCTTCTCCCATGTGGCCAG 60.752 63.158 5.11 0.00 0.00 4.85
3442 5325 1.792757 AAGCTTCTCCCATGTGGCCA 61.793 55.000 0.00 0.00 0.00 5.36
3443 5326 1.000396 AAGCTTCTCCCATGTGGCC 60.000 57.895 0.00 0.00 0.00 5.36
3444 5327 0.322816 TGAAGCTTCTCCCATGTGGC 60.323 55.000 26.09 0.00 0.00 5.01
3445 5328 2.426024 CAATGAAGCTTCTCCCATGTGG 59.574 50.000 26.09 3.65 0.00 4.17
3446 5329 3.128242 GTCAATGAAGCTTCTCCCATGTG 59.872 47.826 26.09 13.14 0.00 3.21
3447 5330 3.245016 TGTCAATGAAGCTTCTCCCATGT 60.245 43.478 26.09 2.19 0.00 3.21
3448 5331 3.349927 TGTCAATGAAGCTTCTCCCATG 58.650 45.455 26.09 16.57 0.00 3.66
3449 5332 3.618351 CTGTCAATGAAGCTTCTCCCAT 58.382 45.455 26.09 10.08 0.00 4.00
3450 5333 2.290514 CCTGTCAATGAAGCTTCTCCCA 60.291 50.000 26.09 14.21 0.00 4.37
3451 5334 2.290577 ACCTGTCAATGAAGCTTCTCCC 60.291 50.000 26.09 10.73 0.00 4.30
3452 5335 3.006247 GACCTGTCAATGAAGCTTCTCC 58.994 50.000 26.09 10.41 0.00 3.71
3453 5336 3.006247 GGACCTGTCAATGAAGCTTCTC 58.994 50.000 26.09 12.18 0.00 2.87
3454 5337 2.641815 AGGACCTGTCAATGAAGCTTCT 59.358 45.455 26.09 9.99 0.00 2.85
3455 5338 2.746362 CAGGACCTGTCAATGAAGCTTC 59.254 50.000 19.89 19.89 0.00 3.86
3456 5339 2.107204 ACAGGACCTGTCAATGAAGCTT 59.893 45.455 21.99 0.00 41.21 3.74
3457 5340 1.701847 ACAGGACCTGTCAATGAAGCT 59.298 47.619 21.99 0.00 41.21 3.74
3458 5341 2.191128 ACAGGACCTGTCAATGAAGC 57.809 50.000 21.99 0.00 41.21 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.