Multiple sequence alignment - TraesCS6D01G161500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G161500 chr6D 100.000 6554 0 0 1 6554 140029252 140022699 0.000000e+00 12104
1 TraesCS6D01G161500 chr6D 100.000 150 0 0 6842 6991 140022411 140022262 1.920000e-70 278
2 TraesCS6D01G161500 chr6A 94.118 1802 77 19 4280 6073 183292775 183290995 0.000000e+00 2713
3 TraesCS6D01G161500 chr6A 95.809 859 31 3 1758 2616 183293615 183292762 0.000000e+00 1382
4 TraesCS6D01G161500 chr6A 92.175 754 43 3 921 1667 183294361 183293617 0.000000e+00 1051
5 TraesCS6D01G161500 chr6A 93.448 641 42 0 7 647 568533025 568532385 0.000000e+00 952
6 TraesCS6D01G161500 chr6A 92.822 404 21 7 6153 6553 183290997 183290599 4.700000e-161 579
7 TraesCS6D01G161500 chr6A 94.915 177 6 3 652 827 183297120 183296946 2.480000e-69 274
8 TraesCS6D01G161500 chr6A 92.655 177 6 3 652 827 183927881 183928051 1.510000e-61 248
9 TraesCS6D01G161500 chr6A 95.082 122 5 1 813 933 183296395 183296274 2.570000e-44 191
10 TraesCS6D01G161500 chr6A 94.262 122 6 1 813 933 183928602 183928723 1.200000e-42 185
11 TraesCS6D01G161500 chr6B 93.726 1801 79 21 4284 6073 239870078 239868301 0.000000e+00 2669
12 TraesCS6D01G161500 chr6B 90.722 1994 92 31 660 2616 239872006 239870069 0.000000e+00 2571
13 TraesCS6D01G161500 chr6B 86.694 1240 158 6 2617 3854 674398327 674399561 0.000000e+00 1369
14 TraesCS6D01G161500 chr6B 91.067 403 32 3 6153 6554 239868303 239867904 6.170000e-150 542
15 TraesCS6D01G161500 chr6B 91.667 84 7 0 6065 6148 576199684 576199767 4.430000e-22 117
16 TraesCS6D01G161500 chr4D 90.811 1665 147 4 2617 4279 75544088 75542428 0.000000e+00 2222
17 TraesCS6D01G161500 chr4D 95.363 647 28 1 1 647 69730756 69731400 0.000000e+00 1027
18 TraesCS6D01G161500 chr4D 94.745 647 33 1 1 647 361616079 361616724 0.000000e+00 1005
19 TraesCS6D01G161500 chr4D 94.099 644 38 0 4 647 191355201 191355844 0.000000e+00 979
20 TraesCS6D01G161500 chr4D 93.344 646 42 1 1 646 299578110 299578754 0.000000e+00 953
21 TraesCS6D01G161500 chr3D 90.636 1666 151 4 2616 4279 475895191 475893529 0.000000e+00 2207
22 TraesCS6D01G161500 chr3D 93.944 644 39 0 4 647 491162454 491161811 0.000000e+00 974
23 TraesCS6D01G161500 chr3D 87.500 480 48 8 3809 4279 154607006 154607482 1.710000e-150 544
24 TraesCS6D01G161500 chr5A 87.755 1666 199 5 2616 4279 128419812 128418150 0.000000e+00 1941
25 TraesCS6D01G161500 chr5A 93.827 81 5 0 6068 6148 549199815 549199735 9.520000e-24 122
26 TraesCS6D01G161500 chr3B 86.503 1667 217 7 2616 4279 171719958 171718297 0.000000e+00 1825
27 TraesCS6D01G161500 chr3B 80.597 1675 306 17 2618 4283 101440984 101439320 0.000000e+00 1275
28 TraesCS6D01G161500 chr3B 92.771 83 4 2 6066 6148 416279037 416279117 1.230000e-22 119
29 TraesCS6D01G161500 chr1D 85.287 1672 233 12 2617 4286 213376008 213377668 0.000000e+00 1712
30 TraesCS6D01G161500 chr2A 84.890 1681 232 17 2617 4288 175739700 175741367 0.000000e+00 1677
31 TraesCS6D01G161500 chr2A 93.789 644 40 0 4 647 434648256 434647613 0.000000e+00 968
32 TraesCS6D01G161500 chr2A 93.902 82 5 0 6065 6146 203318501 203318582 2.650000e-24 124
33 TraesCS6D01G161500 chr7D 85.843 1441 195 6 2842 4281 174158325 174156893 0.000000e+00 1522
34 TraesCS6D01G161500 chr1A 94.099 644 37 1 5 647 133587426 133588069 0.000000e+00 977
35 TraesCS6D01G161500 chr1A 92.593 81 5 1 6066 6146 517104434 517104513 1.590000e-21 115
36 TraesCS6D01G161500 chr1A 88.298 94 10 1 6071 6163 57407819 57407726 2.060000e-20 111
37 TraesCS6D01G161500 chr1B 93.333 645 40 3 4 647 355037031 355036389 0.000000e+00 950
38 TraesCS6D01G161500 chr5D 97.541 122 2 1 4159 4279 42920830 42920951 2.560000e-49 207
39 TraesCS6D01G161500 chr2D 97.436 78 2 0 6071 6148 512165840 512165917 4.400000e-27 134
40 TraesCS6D01G161500 chr7A 90.426 94 8 1 6061 6154 34744300 34744208 9.520000e-24 122
41 TraesCS6D01G161500 chr4B 89.888 89 9 0 6070 6158 570144643 570144731 1.590000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G161500 chr6D 140022262 140029252 6990 True 6191.000000 12104 100.000000 1 6991 2 chr6D.!!$R1 6990
1 TraesCS6D01G161500 chr6A 183290599 183297120 6521 True 1031.666667 2713 94.153500 652 6553 6 chr6A.!!$R2 5901
2 TraesCS6D01G161500 chr6A 568532385 568533025 640 True 952.000000 952 93.448000 7 647 1 chr6A.!!$R1 640
3 TraesCS6D01G161500 chr6A 183927881 183928723 842 False 216.500000 248 93.458500 652 933 2 chr6A.!!$F1 281
4 TraesCS6D01G161500 chr6B 239867904 239872006 4102 True 1927.333333 2669 91.838333 660 6554 3 chr6B.!!$R1 5894
5 TraesCS6D01G161500 chr6B 674398327 674399561 1234 False 1369.000000 1369 86.694000 2617 3854 1 chr6B.!!$F2 1237
6 TraesCS6D01G161500 chr4D 75542428 75544088 1660 True 2222.000000 2222 90.811000 2617 4279 1 chr4D.!!$R1 1662
7 TraesCS6D01G161500 chr4D 69730756 69731400 644 False 1027.000000 1027 95.363000 1 647 1 chr4D.!!$F1 646
8 TraesCS6D01G161500 chr4D 361616079 361616724 645 False 1005.000000 1005 94.745000 1 647 1 chr4D.!!$F4 646
9 TraesCS6D01G161500 chr4D 191355201 191355844 643 False 979.000000 979 94.099000 4 647 1 chr4D.!!$F2 643
10 TraesCS6D01G161500 chr4D 299578110 299578754 644 False 953.000000 953 93.344000 1 646 1 chr4D.!!$F3 645
11 TraesCS6D01G161500 chr3D 475893529 475895191 1662 True 2207.000000 2207 90.636000 2616 4279 1 chr3D.!!$R1 1663
12 TraesCS6D01G161500 chr3D 491161811 491162454 643 True 974.000000 974 93.944000 4 647 1 chr3D.!!$R2 643
13 TraesCS6D01G161500 chr5A 128418150 128419812 1662 True 1941.000000 1941 87.755000 2616 4279 1 chr5A.!!$R1 1663
14 TraesCS6D01G161500 chr3B 171718297 171719958 1661 True 1825.000000 1825 86.503000 2616 4279 1 chr3B.!!$R2 1663
15 TraesCS6D01G161500 chr3B 101439320 101440984 1664 True 1275.000000 1275 80.597000 2618 4283 1 chr3B.!!$R1 1665
16 TraesCS6D01G161500 chr1D 213376008 213377668 1660 False 1712.000000 1712 85.287000 2617 4286 1 chr1D.!!$F1 1669
17 TraesCS6D01G161500 chr2A 175739700 175741367 1667 False 1677.000000 1677 84.890000 2617 4288 1 chr2A.!!$F1 1671
18 TraesCS6D01G161500 chr2A 434647613 434648256 643 True 968.000000 968 93.789000 4 647 1 chr2A.!!$R1 643
19 TraesCS6D01G161500 chr7D 174156893 174158325 1432 True 1522.000000 1522 85.843000 2842 4281 1 chr7D.!!$R1 1439
20 TraesCS6D01G161500 chr1A 133587426 133588069 643 False 977.000000 977 94.099000 5 647 1 chr1A.!!$F1 642
21 TraesCS6D01G161500 chr1B 355036389 355037031 642 True 950.000000 950 93.333000 4 647 1 chr1B.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 694 0.033366 TGCAGCAAGTAACGAGCAGA 59.967 50.0 0.0 0.0 0.00 4.26 F
970 3473 0.384309 TCGCTGATAGCCTACGGTTG 59.616 55.0 0.0 0.0 38.18 3.77 F
1690 4211 0.108207 TTTTTAAGCGTCACCGGGGA 59.892 50.0 0.0 0.0 33.68 4.81 F
2685 5215 1.471119 TGTACCTGTCTCCGTGGATC 58.529 55.0 0.0 0.0 0.00 3.36 F
3584 6119 0.396811 ACAGCCTGCTTACTTTCCGT 59.603 50.0 0.0 0.0 0.00 4.69 F
3945 6483 0.750850 TCTTACCCTATGGCACGCTC 59.249 55.0 0.0 0.0 33.59 5.03 F
5688 8261 0.914417 AAGGGAAGGAGGCCGATGAA 60.914 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 4211 0.846693 AGGTGGGCAGTTTTCTCTGT 59.153 50.000 0.00 0.0 37.70 3.41 R
2341 4862 1.595466 TTGCAAATGCCAGCAAAAGG 58.405 45.000 0.00 0.0 46.65 3.11 R
2992 5524 0.830023 TTGGCCACCCTTAACCTTGC 60.830 55.000 3.88 0.0 0.00 4.01 R
4633 7176 1.135315 CTTGGAACGCATCAAGCCG 59.865 57.895 0.00 0.0 41.38 5.52 R
5415 7988 0.955428 GCTTGGTGAGTGCATTCGGA 60.955 55.000 4.63 0.0 0.00 4.55 R
5900 8475 1.344114 GTTTGAGCAATTGGGCCTTCA 59.656 47.619 4.53 0.0 0.00 3.02 R
6842 9421 0.034863 TCGCCTATTTGAACACCCCC 60.035 55.000 0.00 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 182 1.905215 CATGAGTTGAGTGTCTCCCCT 59.095 52.381 0.00 0.00 0.00 4.79
263 266 5.534278 TCACATAATGTTGTCAAGCTCCAAA 59.466 36.000 0.00 0.00 0.00 3.28
271 274 5.127845 TGTTGTCAAGCTCCAAAATACCAAA 59.872 36.000 0.00 0.00 0.00 3.28
295 298 3.572255 TCATGCCTAAGTTGACAAAACCC 59.428 43.478 0.00 0.00 0.00 4.11
305 308 2.942804 TGACAAAACCCTGCTTCATCA 58.057 42.857 0.00 0.00 0.00 3.07
376 379 6.211184 TGAGCAATATCAATGTCACCCTTTTT 59.789 34.615 0.00 0.00 0.00 1.94
528 531 5.389516 CCGTAATCCTTCAAAGTTTGTCTCG 60.390 44.000 15.08 9.48 0.00 4.04
529 532 4.489679 AATCCTTCAAAGTTTGTCTCGC 57.510 40.909 15.08 0.00 0.00 5.03
597 600 1.576421 GCGGTGGAAAGAGCAACAG 59.424 57.895 0.00 0.00 0.00 3.16
598 601 1.856265 GCGGTGGAAAGAGCAACAGG 61.856 60.000 0.00 0.00 0.00 4.00
608 611 5.817296 GGAAAGAGCAACAGGATTTTGTTTT 59.183 36.000 0.00 0.00 39.17 2.43
647 650 2.554032 CAAGGAGCGTCCAAGAAATTGT 59.446 45.455 6.78 0.00 39.61 2.71
648 651 2.427506 AGGAGCGTCCAAGAAATTGTC 58.572 47.619 6.78 0.00 39.61 3.18
649 652 2.039084 AGGAGCGTCCAAGAAATTGTCT 59.961 45.455 6.78 0.00 39.61 3.41
691 694 0.033366 TGCAGCAAGTAACGAGCAGA 59.967 50.000 0.00 0.00 0.00 4.26
824 1396 7.177392 GGCCTATAAATTCATTAGTGGCATCTT 59.823 37.037 0.00 0.00 42.67 2.40
897 1470 4.243550 CCACCAGGTCCCAGGTTA 57.756 61.111 0.00 0.00 33.38 2.85
970 3473 0.384309 TCGCTGATAGCCTACGGTTG 59.616 55.000 0.00 0.00 38.18 3.77
987 3490 2.360475 GCACTTCCACCTCTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
1326 3830 4.740902 AGGACTAAACATTTTTCCAGCCT 58.259 39.130 7.21 0.00 0.00 4.58
1336 3840 1.178534 TTTCCAGCCTTGCTTTCCCG 61.179 55.000 0.00 0.00 36.40 5.14
1338 3842 2.629656 CCAGCCTTGCTTTCCCGTG 61.630 63.158 0.00 0.00 36.40 4.94
1339 3843 2.282462 AGCCTTGCTTTCCCGTGG 60.282 61.111 0.00 0.00 33.89 4.94
1340 3844 4.056125 GCCTTGCTTTCCCGTGGC 62.056 66.667 0.00 0.00 0.00 5.01
1389 3900 2.825861 TTCGCCCGAACTTAAAGAGT 57.174 45.000 0.00 0.00 41.47 3.24
1391 3902 0.442699 CGCCCGAACTTAAAGAGTGC 59.557 55.000 0.00 0.00 39.00 4.40
1392 3903 0.803117 GCCCGAACTTAAAGAGTGCC 59.197 55.000 0.00 0.00 39.00 5.01
1393 3904 1.880646 GCCCGAACTTAAAGAGTGCCA 60.881 52.381 0.00 0.00 39.00 4.92
1394 3905 2.711542 CCCGAACTTAAAGAGTGCCAT 58.288 47.619 0.00 0.00 39.00 4.40
1395 3906 3.869065 CCCGAACTTAAAGAGTGCCATA 58.131 45.455 0.00 0.00 39.00 2.74
1396 3907 4.451900 CCCGAACTTAAAGAGTGCCATAT 58.548 43.478 0.00 0.00 39.00 1.78
1397 3908 4.511826 CCCGAACTTAAAGAGTGCCATATC 59.488 45.833 0.00 0.00 39.00 1.63
1398 3909 4.511826 CCGAACTTAAAGAGTGCCATATCC 59.488 45.833 0.00 0.00 39.00 2.59
1406 3917 5.378230 AAGAGTGCCATATCCTTTCATCA 57.622 39.130 0.00 0.00 0.00 3.07
1409 3920 4.712476 AGTGCCATATCCTTTCATCAGTC 58.288 43.478 0.00 0.00 0.00 3.51
1412 3923 5.048921 GTGCCATATCCTTTCATCAGTCATG 60.049 44.000 0.00 0.00 0.00 3.07
1479 3990 6.391227 TGGATTTTGAGTCTGTTTCCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
1507 4018 5.464389 ACGAGTTAACATATATTGTTCGGGC 59.536 40.000 8.61 0.00 45.55 6.13
1551 4062 6.549364 TGGAACTCTTTTTCATGTGTAATGGT 59.451 34.615 0.00 0.00 0.00 3.55
1560 4071 8.984891 TTTTCATGTGTAATGGTTCATTGATC 57.015 30.769 3.65 0.00 35.54 2.92
1657 4168 7.764901 CCTGGTAAGATGAACTAGTTTAAGTCC 59.235 40.741 10.02 7.68 0.00 3.85
1690 4211 0.108207 TTTTTAAGCGTCACCGGGGA 59.892 50.000 0.00 0.00 33.68 4.81
1742 4263 3.814504 ACCATCAACCAAGACTGGATT 57.185 42.857 0.00 0.00 46.92 3.01
1743 4264 4.118168 ACCATCAACCAAGACTGGATTT 57.882 40.909 0.00 0.00 46.92 2.17
1744 4265 4.482990 ACCATCAACCAAGACTGGATTTT 58.517 39.130 0.00 0.00 46.92 1.82
1745 4266 4.901250 ACCATCAACCAAGACTGGATTTTT 59.099 37.500 0.00 0.00 46.92 1.94
1780 4301 5.682943 ATGTGTTGCGTTTATGTGTAGTT 57.317 34.783 0.00 0.00 0.00 2.24
1802 4323 3.592898 TGTTGTATCGTGAGCTCATGT 57.407 42.857 30.22 21.07 34.59 3.21
1807 4328 4.758688 TGTATCGTGAGCTCATGTTGATT 58.241 39.130 30.22 15.95 34.59 2.57
1823 4344 8.892723 TCATGTTGATTAGGATATGTGTTGTTC 58.107 33.333 0.00 0.00 0.00 3.18
1829 4350 9.438228 TGATTAGGATATGTGTTGTTCGTTTTA 57.562 29.630 0.00 0.00 0.00 1.52
1923 4444 9.561069 ACATGGGAATCTGTAATTAACTGTATC 57.439 33.333 0.00 0.00 0.00 2.24
2014 4535 6.586344 TGATTTTGTTGGGCTTGAAATAACA 58.414 32.000 0.00 0.00 0.00 2.41
2042 4563 8.892723 CATATATTTAACACCAGCTGAGTTGAA 58.107 33.333 25.32 23.60 0.00 2.69
2078 4599 6.016943 CGTGTTTCACCCTTTGATACCTTTTA 60.017 38.462 0.00 0.00 35.81 1.52
2079 4600 7.308951 CGTGTTTCACCCTTTGATACCTTTTAT 60.309 37.037 0.00 0.00 35.81 1.40
2080 4601 8.364894 GTGTTTCACCCTTTGATACCTTTTATT 58.635 33.333 0.00 0.00 35.81 1.40
2168 4689 6.597672 ACATACATGAAATCCGTTGTGTGTAT 59.402 34.615 0.00 0.00 31.70 2.29
2198 4719 3.093057 ACACTACTCTTAGCAGTCCCTG 58.907 50.000 0.00 0.00 34.12 4.45
2205 4726 1.537202 CTTAGCAGTCCCTGTTGCAAC 59.463 52.381 22.83 22.83 42.67 4.17
2341 4862 9.162764 TCTTGTCTGCTATAGTTTAATTGGAAC 57.837 33.333 0.84 0.00 0.00 3.62
2448 4976 4.143179 GCACTCGTCGTAGTTAATGCTTTT 60.143 41.667 0.00 0.00 0.00 2.27
2605 5135 9.160496 CATCTTCACTTAGCTTTCTTGATTAGT 57.840 33.333 0.00 0.00 0.00 2.24
2610 5140 9.772973 TCACTTAGCTTTCTTGATTAGTAAACA 57.227 29.630 0.00 0.00 0.00 2.83
2627 5157 7.617041 AGTAAACAATATGGCTTTCTCTGAC 57.383 36.000 0.00 0.00 0.00 3.51
2685 5215 1.471119 TGTACCTGTCTCCGTGGATC 58.529 55.000 0.00 0.00 0.00 3.36
2810 5342 2.495155 TGTTGCTGCCAGTCATACAT 57.505 45.000 0.00 0.00 0.00 2.29
3053 5585 3.550678 CGGTTTCTCTGCCTCGTATTAAC 59.449 47.826 0.00 0.00 0.00 2.01
3195 5727 0.905357 GGCTGCTCTTCCTCAAGGTA 59.095 55.000 0.00 0.00 36.34 3.08
3369 5901 1.268539 CGCTGTTTTCCTTTGCGTCTT 60.269 47.619 0.00 0.00 41.45 3.01
3400 5932 3.005554 GCTCAGTGCACTCACAATATGT 58.994 45.455 18.64 0.00 45.49 2.29
3408 5940 4.637091 TGCACTCACAATATGTCAATGGAG 59.363 41.667 0.00 0.00 0.00 3.86
3415 5947 1.985473 TATGTCAATGGAGCATGGGC 58.015 50.000 0.00 0.00 41.61 5.36
3473 6007 2.138656 CTGAGCTGTTGGCCTTGCAC 62.139 60.000 3.32 2.40 43.05 4.57
3492 6026 3.493129 GCACGAACTGTTGTCAGATGTTA 59.507 43.478 0.00 0.00 43.76 2.41
3584 6119 0.396811 ACAGCCTGCTTACTTTCCGT 59.603 50.000 0.00 0.00 0.00 4.69
3817 6355 1.065418 CGTTCTATGGGGAAAGCTGGT 60.065 52.381 0.00 0.00 0.00 4.00
3836 6374 2.162681 GTGCTGGATACTTTGGCTTGT 58.837 47.619 0.00 0.00 37.61 3.16
3920 6458 2.126888 AATGTTGCTTTCGCGGCG 60.127 55.556 17.70 17.70 39.65 6.46
3929 6467 4.961511 TTCGCGGCGTGTGCTCTT 62.962 61.111 22.90 0.00 42.25 2.85
3945 6483 0.750850 TCTTACCCTATGGCACGCTC 59.249 55.000 0.00 0.00 33.59 5.03
4128 6667 2.844348 TGATGTAACCTCTTCCCCCTTC 59.156 50.000 0.00 0.00 0.00 3.46
4148 6687 4.377839 TCGTCTCTTTCCTATGCTTCTG 57.622 45.455 0.00 0.00 0.00 3.02
4149 6688 2.863137 CGTCTCTTTCCTATGCTTCTGC 59.137 50.000 0.00 0.00 40.20 4.26
4152 6691 4.029520 TCTCTTTCCTATGCTTCTGCTCT 58.970 43.478 0.00 0.00 40.48 4.09
4153 6692 4.121317 CTCTTTCCTATGCTTCTGCTCTG 58.879 47.826 0.00 0.00 40.48 3.35
4154 6693 3.517100 TCTTTCCTATGCTTCTGCTCTGT 59.483 43.478 0.00 0.00 40.48 3.41
4426 6968 4.460731 GCCTTGGAGCATTTCTTAAGTTCT 59.539 41.667 1.63 0.00 0.00 3.01
4480 7022 5.217393 CGGGAAACATGAATTATGCATCTG 58.783 41.667 0.19 0.00 40.59 2.90
4596 7139 2.164624 TGGTGCCACAACACAAACTTAC 59.835 45.455 0.00 0.00 42.55 2.34
4598 7141 2.096174 GTGCCACAACACAAACTTACGA 59.904 45.455 0.00 0.00 40.40 3.43
4678 7221 3.761752 TGGTGCTAGAAGCCAAAATTACC 59.238 43.478 0.00 0.00 41.51 2.85
4849 7392 8.885494 ACTAGCATGAATTTCTAAGATGTCTC 57.115 34.615 0.00 0.00 0.00 3.36
4909 7452 9.358872 GTATATATACTAAAGTTTGTACCCCGC 57.641 37.037 14.53 0.00 0.00 6.13
4910 7453 2.934886 ACTAAAGTTTGTACCCCGCA 57.065 45.000 0.00 0.00 0.00 5.69
4911 7454 3.211718 ACTAAAGTTTGTACCCCGCAA 57.788 42.857 0.00 0.00 0.00 4.85
4912 7455 3.553904 ACTAAAGTTTGTACCCCGCAAA 58.446 40.909 0.00 0.00 33.96 3.68
4913 7456 3.952967 ACTAAAGTTTGTACCCCGCAAAA 59.047 39.130 0.00 0.00 37.54 2.44
4914 7457 3.889520 AAAGTTTGTACCCCGCAAAAA 57.110 38.095 0.00 0.00 37.54 1.94
4993 7564 1.859302 TTTGGCAAGTGAACAAGGGT 58.141 45.000 0.00 0.00 0.00 4.34
5005 7576 8.846211 CAAGTGAACAAGGGTTTATTCTTCTTA 58.154 33.333 0.00 0.00 37.36 2.10
5177 7750 4.615949 CCATTTGACCGTTCAACAATTCA 58.384 39.130 0.00 0.00 41.64 2.57
5400 7973 1.069022 CCACAGTTTGCGGTCATGAAG 60.069 52.381 0.00 0.00 0.00 3.02
5415 7988 6.594159 CGGTCATGAAGAATGTAAACTACCTT 59.406 38.462 0.00 0.00 37.56 3.50
5531 8104 3.023119 TGAATGTTGGCTTTGTGACACT 58.977 40.909 7.20 0.00 30.21 3.55
5607 8180 4.659172 CGGGTTCTGGCCCTTGCA 62.659 66.667 0.00 0.00 46.47 4.08
5685 8258 2.073101 GGAAGGGAAGGAGGCCGAT 61.073 63.158 0.00 0.00 0.00 4.18
5688 8261 0.914417 AAGGGAAGGAGGCCGATGAA 60.914 55.000 0.00 0.00 0.00 2.57
5863 8438 3.067106 ACTGCAAACTCCAACATCTACG 58.933 45.455 0.00 0.00 0.00 3.51
5898 8473 2.566833 TCCATGTTCCTTCACAGGTG 57.433 50.000 0.00 0.00 41.69 4.00
5900 8475 2.644299 TCCATGTTCCTTCACAGGTGAT 59.356 45.455 2.52 0.00 41.69 3.06
5928 8503 3.809279 CCCAATTGCTCAAACACTTTTCC 59.191 43.478 0.00 0.00 0.00 3.13
6027 8604 1.204704 TCCTTGCAGGATACACGTGAG 59.795 52.381 25.01 5.28 40.06 3.51
6073 8650 9.632638 AATTCCATATGTCACATAAAAGCTACT 57.367 29.630 0.45 0.00 0.00 2.57
6074 8651 8.662781 TTCCATATGTCACATAAAAGCTACTC 57.337 34.615 0.45 0.00 0.00 2.59
6075 8652 7.217200 TCCATATGTCACATAAAAGCTACTCC 58.783 38.462 0.45 0.00 0.00 3.85
6076 8653 6.428159 CCATATGTCACATAAAAGCTACTCCC 59.572 42.308 0.45 0.00 0.00 4.30
6077 8654 5.700402 ATGTCACATAAAAGCTACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
6078 8655 5.086104 TGTCACATAAAAGCTACTCCCTC 57.914 43.478 0.00 0.00 0.00 4.30
6079 8656 4.081087 TGTCACATAAAAGCTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
6080 8657 3.132289 TCACATAAAAGCTACTCCCTCCG 59.868 47.826 0.00 0.00 0.00 4.63
6081 8658 3.105283 ACATAAAAGCTACTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
6082 8659 3.132467 ACATAAAAGCTACTCCCTCCGTC 59.868 47.826 0.00 0.00 0.00 4.79
6083 8660 0.903236 AAAAGCTACTCCCTCCGTCC 59.097 55.000 0.00 0.00 0.00 4.79
6084 8661 0.976590 AAAGCTACTCCCTCCGTCCC 60.977 60.000 0.00 0.00 0.00 4.46
6085 8662 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
6086 8663 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
6087 8664 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
6088 8665 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
6089 8666 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
6090 8667 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
6091 8668 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
6092 8669 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
6093 8670 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
6094 8671 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
6095 8672 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
6096 8673 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
6098 8675 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
6099 8676 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
6100 8677 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
6101 8678 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
6102 8679 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
6103 8680 6.019152 CGTCCCATAATGTAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
6104 8681 5.798434 GTCCCATAATGTAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
6105 8682 5.473846 TCCCATAATGTAAGACGTTTTTGCA 59.526 36.000 0.00 1.87 0.00 4.08
6106 8683 6.016192 TCCCATAATGTAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
6107 8684 6.307800 CCCATAATGTAAGACGTTTTTGCAAG 59.692 38.462 0.00 0.00 0.00 4.01
6108 8685 6.183359 CCATAATGTAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
6109 8686 4.568152 ATGTAAGACGTTTTTGCAAGCT 57.432 36.364 0.00 0.00 0.00 3.74
6110 8687 5.682943 ATGTAAGACGTTTTTGCAAGCTA 57.317 34.783 0.00 0.00 0.00 3.32
6111 8688 5.682943 TGTAAGACGTTTTTGCAAGCTAT 57.317 34.783 0.00 0.00 0.00 2.97
6112 8689 6.788684 TGTAAGACGTTTTTGCAAGCTATA 57.211 33.333 0.00 0.00 0.00 1.31
6113 8690 7.372451 TGTAAGACGTTTTTGCAAGCTATAT 57.628 32.000 0.00 0.00 0.00 0.86
6114 8691 7.812648 TGTAAGACGTTTTTGCAAGCTATATT 58.187 30.769 0.00 0.00 0.00 1.28
6115 8692 8.937884 TGTAAGACGTTTTTGCAAGCTATATTA 58.062 29.630 0.00 0.00 0.00 0.98
6116 8693 9.422196 GTAAGACGTTTTTGCAAGCTATATTAG 57.578 33.333 0.00 0.00 0.00 1.73
6142 8719 9.233232 GCTTTCAAAAACGTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
6150 8727 6.203808 CGTCTTATATTATGGGACGGATCA 57.796 41.667 17.59 0.00 43.69 2.92
6151 8728 6.266323 CGTCTTATATTATGGGACGGATCAG 58.734 44.000 17.59 0.00 43.69 2.90
6152 8729 6.127703 CGTCTTATATTATGGGACGGATCAGT 60.128 42.308 17.59 0.00 43.69 3.41
6153 8730 7.066645 CGTCTTATATTATGGGACGGATCAGTA 59.933 40.741 17.59 0.00 43.69 2.74
6154 8731 8.189460 GTCTTATATTATGGGACGGATCAGTAC 58.811 40.741 0.00 0.00 0.00 2.73
6172 8749 4.386954 CAGTACATGAATATACTGGCAGCG 59.613 45.833 15.89 0.00 43.02 5.18
6309 8886 8.642432 CATATACCTCTCATTGAAGTGTAGGAA 58.358 37.037 0.00 0.00 31.86 3.36
6312 8889 5.071788 ACCTCTCATTGAAGTGTAGGAAACA 59.928 40.000 0.00 0.00 35.06 2.83
6331 8908 6.420903 GGAAACAAGGCTTTTAGTGAAATGTC 59.579 38.462 0.00 0.00 0.00 3.06
6360 8938 9.274065 CTTTTCTAAATGAGGTTTGCGTAATAC 57.726 33.333 0.00 0.00 0.00 1.89
6382 8960 2.076863 ACGAAAGCTATGTGTTGCTCC 58.923 47.619 0.00 0.00 38.75 4.70
6424 9002 8.960591 TCTATCTGGAATTTGGAATTTTCAGTC 58.039 33.333 12.73 0.00 0.00 3.51
6425 9003 7.787623 ATCTGGAATTTGGAATTTTCAGTCT 57.212 32.000 12.73 4.99 0.00 3.24
6467 9045 7.728981 TGGGGTAATCGAGTTAGAGATCTTTAT 59.271 37.037 0.00 0.00 0.00 1.40
6476 9055 5.604650 AGTTAGAGATCTTTATGGACCCCAG 59.395 44.000 0.00 0.00 36.75 4.45
6477 9056 4.014273 AGAGATCTTTATGGACCCCAGT 57.986 45.455 0.00 0.00 36.75 4.00
6494 9073 5.020132 CCCCAGTACCCAAAATAAATGTCA 58.980 41.667 0.00 0.00 0.00 3.58
6522 9101 4.525912 AAATGGTTGAAGTTGGAGATGC 57.474 40.909 0.00 0.00 0.00 3.91
6525 9104 2.622942 TGGTTGAAGTTGGAGATGCAAC 59.377 45.455 8.96 8.96 35.98 4.17
6528 9107 2.507484 TGAAGTTGGAGATGCAACTGG 58.493 47.619 18.69 0.00 40.98 4.00
6530 9109 2.191128 AGTTGGAGATGCAACTGGAC 57.809 50.000 17.50 0.00 39.82 4.02
6542 9121 2.096496 GCAACTGGACGATCAAAGATGG 59.904 50.000 0.00 0.00 0.00 3.51
6860 9439 2.489040 GGGGGTGTTCAAATAGGCG 58.511 57.895 0.00 0.00 0.00 5.52
6861 9440 0.034863 GGGGGTGTTCAAATAGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
6862 9441 1.092348 GGGGTGTTCAAATAGGCGAC 58.908 55.000 0.00 0.00 0.00 5.19
6880 9459 7.462571 AGGCGACTACCAAATTAAATTCTTT 57.537 32.000 0.00 0.00 40.61 2.52
6881 9460 7.892609 AGGCGACTACCAAATTAAATTCTTTT 58.107 30.769 0.00 0.00 40.61 2.27
6882 9461 8.364894 AGGCGACTACCAAATTAAATTCTTTTT 58.635 29.630 0.00 0.00 40.61 1.94
6907 9486 5.681337 AGTTGCTTTTTAGAGTCAAGAGC 57.319 39.130 0.00 0.00 0.00 4.09
6908 9487 5.126067 AGTTGCTTTTTAGAGTCAAGAGCA 58.874 37.500 4.79 4.79 36.93 4.26
6909 9488 5.238214 AGTTGCTTTTTAGAGTCAAGAGCAG 59.762 40.000 8.01 0.00 39.49 4.24
6910 9489 4.960938 TGCTTTTTAGAGTCAAGAGCAGA 58.039 39.130 4.79 0.00 34.12 4.26
6911 9490 5.368145 TGCTTTTTAGAGTCAAGAGCAGAA 58.632 37.500 4.79 0.00 34.12 3.02
6912 9491 5.822519 TGCTTTTTAGAGTCAAGAGCAGAAA 59.177 36.000 4.79 0.00 34.12 2.52
6913 9492 6.488006 TGCTTTTTAGAGTCAAGAGCAGAAAT 59.512 34.615 4.79 0.00 34.12 2.17
6914 9493 7.661437 TGCTTTTTAGAGTCAAGAGCAGAAATA 59.339 33.333 4.79 0.00 34.12 1.40
6915 9494 8.672815 GCTTTTTAGAGTCAAGAGCAGAAATAT 58.327 33.333 0.00 0.00 0.00 1.28
6921 9500 8.940768 AGAGTCAAGAGCAGAAATATAAGTTC 57.059 34.615 0.00 0.00 0.00 3.01
6922 9501 8.757877 AGAGTCAAGAGCAGAAATATAAGTTCT 58.242 33.333 0.00 0.00 35.69 3.01
6923 9502 9.377312 GAGTCAAGAGCAGAAATATAAGTTCTT 57.623 33.333 0.42 0.00 32.96 2.52
6924 9503 9.732130 AGTCAAGAGCAGAAATATAAGTTCTTT 57.268 29.630 0.42 0.00 32.96 2.52
6940 9519 9.740710 ATAAGTTCTTTAGAAATGCAACTAGGT 57.259 29.630 0.00 0.00 35.58 3.08
6941 9520 7.440523 AGTTCTTTAGAAATGCAACTAGGTG 57.559 36.000 2.45 2.45 35.58 4.00
6942 9521 7.224297 AGTTCTTTAGAAATGCAACTAGGTGA 58.776 34.615 13.29 0.00 35.58 4.02
6943 9522 7.885399 AGTTCTTTAGAAATGCAACTAGGTGAT 59.115 33.333 13.29 0.00 35.58 3.06
6944 9523 9.162764 GTTCTTTAGAAATGCAACTAGGTGATA 57.837 33.333 13.29 0.00 35.58 2.15
6945 9524 8.718102 TCTTTAGAAATGCAACTAGGTGATAC 57.282 34.615 13.29 0.00 0.00 2.24
6946 9525 8.318412 TCTTTAGAAATGCAACTAGGTGATACA 58.682 33.333 13.29 0.00 0.00 2.29
6947 9526 8.856153 TTTAGAAATGCAACTAGGTGATACAA 57.144 30.769 13.29 0.00 0.00 2.41
6948 9527 6.743575 AGAAATGCAACTAGGTGATACAAC 57.256 37.500 13.29 0.00 0.00 3.32
6949 9528 5.648092 AGAAATGCAACTAGGTGATACAACC 59.352 40.000 13.29 0.00 40.85 3.77
6950 9529 3.343941 TGCAACTAGGTGATACAACCC 57.656 47.619 13.29 0.00 41.54 4.11
6951 9530 2.277084 GCAACTAGGTGATACAACCCG 58.723 52.381 13.29 0.00 41.54 5.28
6952 9531 2.093869 GCAACTAGGTGATACAACCCGA 60.094 50.000 13.29 0.00 41.54 5.14
6953 9532 3.431766 GCAACTAGGTGATACAACCCGAT 60.432 47.826 13.29 0.00 41.54 4.18
6954 9533 4.202182 GCAACTAGGTGATACAACCCGATA 60.202 45.833 13.29 0.00 41.54 2.92
6955 9534 5.510861 GCAACTAGGTGATACAACCCGATAT 60.511 44.000 13.29 0.00 41.54 1.63
6956 9535 5.723672 ACTAGGTGATACAACCCGATATG 57.276 43.478 0.00 0.00 41.54 1.78
6957 9536 5.391256 ACTAGGTGATACAACCCGATATGA 58.609 41.667 0.00 0.00 41.54 2.15
6958 9537 6.017192 ACTAGGTGATACAACCCGATATGAT 58.983 40.000 0.00 0.00 41.54 2.45
6959 9538 5.152623 AGGTGATACAACCCGATATGATG 57.847 43.478 0.00 0.00 41.54 3.07
6960 9539 4.593206 AGGTGATACAACCCGATATGATGT 59.407 41.667 0.00 0.00 41.54 3.06
6961 9540 4.690748 GGTGATACAACCCGATATGATGTG 59.309 45.833 0.00 0.00 33.79 3.21
6962 9541 5.297547 GTGATACAACCCGATATGATGTGT 58.702 41.667 0.00 0.00 0.00 3.72
6963 9542 5.758296 GTGATACAACCCGATATGATGTGTT 59.242 40.000 0.00 0.00 0.00 3.32
6964 9543 6.926826 GTGATACAACCCGATATGATGTGTTA 59.073 38.462 0.00 0.00 0.00 2.41
6965 9544 6.926826 TGATACAACCCGATATGATGTGTTAC 59.073 38.462 0.00 0.00 0.00 2.50
6966 9545 5.092554 ACAACCCGATATGATGTGTTACA 57.907 39.130 0.00 0.00 0.00 2.41
6967 9546 5.492895 ACAACCCGATATGATGTGTTACAA 58.507 37.500 0.00 0.00 0.00 2.41
6968 9547 6.119536 ACAACCCGATATGATGTGTTACAAT 58.880 36.000 0.00 0.00 0.00 2.71
6969 9548 7.276658 ACAACCCGATATGATGTGTTACAATA 58.723 34.615 0.00 0.00 0.00 1.90
6970 9549 7.771361 ACAACCCGATATGATGTGTTACAATAA 59.229 33.333 0.00 0.00 0.00 1.40
6971 9550 7.962964 ACCCGATATGATGTGTTACAATAAG 57.037 36.000 0.00 0.00 0.00 1.73
6972 9551 6.426937 ACCCGATATGATGTGTTACAATAAGC 59.573 38.462 0.00 0.00 0.00 3.09
6973 9552 6.650807 CCCGATATGATGTGTTACAATAAGCT 59.349 38.462 0.00 0.00 0.00 3.74
6974 9553 7.817478 CCCGATATGATGTGTTACAATAAGCTA 59.183 37.037 0.00 0.00 0.00 3.32
6975 9554 8.864024 CCGATATGATGTGTTACAATAAGCTAG 58.136 37.037 0.00 0.00 0.00 3.42
6976 9555 9.411801 CGATATGATGTGTTACAATAAGCTAGT 57.588 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 266 7.178274 TGTCAACTTAGGCATGAATTTGGTATT 59.822 33.333 0.00 0.00 0.00 1.89
271 274 5.279456 GGGTTTTGTCAACTTAGGCATGAAT 60.279 40.000 0.00 0.00 0.00 2.57
295 298 2.232941 ACCAAGCCATTTGATGAAGCAG 59.767 45.455 0.00 0.00 39.21 4.24
305 308 4.634199 CAGACATTTTCACCAAGCCATTT 58.366 39.130 0.00 0.00 0.00 2.32
376 379 7.930325 GGTATCATTTCTTGAGAGATCATGTGA 59.070 37.037 0.00 0.00 37.89 3.58
528 531 3.694072 TGTGCAACTCAATTACTATGGGC 59.306 43.478 0.00 0.00 38.04 5.36
529 532 5.640732 GTTGTGCAACTCAATTACTATGGG 58.359 41.667 7.72 0.00 38.25 4.00
608 611 3.495453 CCTTGGTAAGTTGGTCCTCGAAA 60.495 47.826 0.00 0.00 0.00 3.46
647 650 3.537580 AGCAAAACTACAACCACGAAGA 58.462 40.909 0.00 0.00 0.00 2.87
648 651 3.963383 AGCAAAACTACAACCACGAAG 57.037 42.857 0.00 0.00 0.00 3.79
649 652 3.249080 GCTAGCAAAACTACAACCACGAA 59.751 43.478 10.63 0.00 0.00 3.85
650 653 2.803956 GCTAGCAAAACTACAACCACGA 59.196 45.455 10.63 0.00 0.00 4.35
794 800 6.542821 CCACTAATGAATTTATAGGCCCTGA 58.457 40.000 0.00 0.00 0.00 3.86
796 802 5.162991 TGCCACTAATGAATTTATAGGCCCT 60.163 40.000 0.00 0.00 38.17 5.19
897 1470 2.520741 CAAGTTGGGGGCCGTTGT 60.521 61.111 0.00 0.00 0.00 3.32
970 3473 2.360475 GGGCAGAGGTGGAAGTGC 60.360 66.667 0.00 0.00 35.07 4.40
987 3490 0.536006 GGGCCATCGGAGGAGAATTG 60.536 60.000 4.39 0.00 0.00 2.32
1253 3757 3.257561 CCGCACGAAGCCGATCAG 61.258 66.667 0.00 0.00 41.38 2.90
1326 3830 4.211330 TGGGCCACGGGAAAGCAA 62.211 61.111 0.00 0.00 0.00 3.91
1336 3840 1.686052 TGAACAAATTCACTGGGCCAC 59.314 47.619 0.00 0.00 40.01 5.01
1338 3842 1.963515 ACTGAACAAATTCACTGGGCC 59.036 47.619 0.00 0.00 40.01 5.80
1339 3843 2.622942 TGACTGAACAAATTCACTGGGC 59.377 45.455 0.00 0.00 40.01 5.36
1340 3844 4.801891 CATGACTGAACAAATTCACTGGG 58.198 43.478 0.00 0.00 40.01 4.45
1389 3900 4.776435 TGACTGATGAAAGGATATGGCA 57.224 40.909 0.00 0.00 0.00 4.92
1391 3902 7.997773 AATCATGACTGATGAAAGGATATGG 57.002 36.000 0.00 0.00 44.50 2.74
1393 3904 9.212641 CGTAAATCATGACTGATGAAAGGATAT 57.787 33.333 0.00 0.00 44.50 1.63
1394 3905 8.421002 TCGTAAATCATGACTGATGAAAGGATA 58.579 33.333 0.00 0.00 44.50 2.59
1395 3906 7.275183 TCGTAAATCATGACTGATGAAAGGAT 58.725 34.615 0.00 0.00 44.50 3.24
1396 3907 6.639563 TCGTAAATCATGACTGATGAAAGGA 58.360 36.000 0.00 0.00 44.50 3.36
1397 3908 6.908870 TCGTAAATCATGACTGATGAAAGG 57.091 37.500 0.00 0.00 44.50 3.11
1398 3909 7.742151 TGTTCGTAAATCATGACTGATGAAAG 58.258 34.615 0.00 0.00 44.50 2.62
1507 4018 5.902613 TCCAATTCAGCAACCTTTATCAG 57.097 39.130 0.00 0.00 0.00 2.90
1551 4062 5.360714 GGTAAGCCCAATTCAGATCAATGAA 59.639 40.000 0.00 0.00 43.04 2.57
1560 4071 5.253330 TGTAGAAAGGTAAGCCCAATTCAG 58.747 41.667 0.00 0.00 35.08 3.02
1608 4119 8.660373 CAGGAGAAACTTTCATTAGACATGTAC 58.340 37.037 0.00 0.00 0.00 2.90
1611 4122 6.656693 ACCAGGAGAAACTTTCATTAGACATG 59.343 38.462 4.34 0.00 0.00 3.21
1622 4133 6.842676 AGTTCATCTTACCAGGAGAAACTTT 58.157 36.000 0.00 0.00 0.00 2.66
1690 4211 0.846693 AGGTGGGCAGTTTTCTCTGT 59.153 50.000 0.00 0.00 37.70 3.41
1745 4266 4.277174 ACGCAACACATATCCAGTCAAAAA 59.723 37.500 0.00 0.00 0.00 1.94
1746 4267 3.818210 ACGCAACACATATCCAGTCAAAA 59.182 39.130 0.00 0.00 0.00 2.44
1747 4268 3.407698 ACGCAACACATATCCAGTCAAA 58.592 40.909 0.00 0.00 0.00 2.69
1748 4269 3.052455 ACGCAACACATATCCAGTCAA 57.948 42.857 0.00 0.00 0.00 3.18
1749 4270 2.760634 ACGCAACACATATCCAGTCA 57.239 45.000 0.00 0.00 0.00 3.41
1750 4271 5.064707 ACATAAACGCAACACATATCCAGTC 59.935 40.000 0.00 0.00 0.00 3.51
1751 4272 4.941263 ACATAAACGCAACACATATCCAGT 59.059 37.500 0.00 0.00 0.00 4.00
1752 4273 5.163764 ACACATAAACGCAACACATATCCAG 60.164 40.000 0.00 0.00 0.00 3.86
1753 4274 4.697828 ACACATAAACGCAACACATATCCA 59.302 37.500 0.00 0.00 0.00 3.41
1754 4275 5.229921 ACACATAAACGCAACACATATCC 57.770 39.130 0.00 0.00 0.00 2.59
1755 4276 7.000575 ACTACACATAAACGCAACACATATC 57.999 36.000 0.00 0.00 0.00 1.63
1756 4277 6.978343 ACTACACATAAACGCAACACATAT 57.022 33.333 0.00 0.00 0.00 1.78
1757 4278 6.788684 AACTACACATAAACGCAACACATA 57.211 33.333 0.00 0.00 0.00 2.29
1780 4301 4.314961 ACATGAGCTCACGATACAACAAA 58.685 39.130 20.97 0.00 0.00 2.83
1802 4323 7.915293 AACGAACAACACATATCCTAATCAA 57.085 32.000 0.00 0.00 0.00 2.57
1807 4328 8.089597 TCACTAAAACGAACAACACATATCCTA 58.910 33.333 0.00 0.00 0.00 2.94
1823 4344 6.525121 TCATGAAACAGAGTCACTAAAACG 57.475 37.500 0.00 0.00 0.00 3.60
1829 4350 5.189342 AGGATCATCATGAAACAGAGTCACT 59.811 40.000 0.00 0.00 0.00 3.41
1978 4499 6.518200 GCCCAACAAAATCAAGATGTAAGGAA 60.518 38.462 0.00 0.00 0.00 3.36
1997 4518 3.658757 TGCTGTTATTTCAAGCCCAAC 57.341 42.857 0.00 0.00 0.00 3.77
2014 4535 6.595682 ACTCAGCTGGTGTTAAATATATGCT 58.404 36.000 15.13 0.00 0.00 3.79
2168 4689 3.439476 GCTAAGAGTAGTGTTGGTCTCGA 59.561 47.826 0.00 0.00 32.90 4.04
2198 4719 9.191995 AGCTGTTTAGTTTAATATTGTTGCAAC 57.808 29.630 22.83 22.83 0.00 4.17
2341 4862 1.595466 TTGCAAATGCCAGCAAAAGG 58.405 45.000 0.00 0.00 46.65 3.11
2448 4976 3.185594 GTGTAGACAATTGTGCGCTAACA 59.814 43.478 17.58 1.80 0.00 2.41
2605 5135 8.635765 AAAGTCAGAGAAAGCCATATTGTTTA 57.364 30.769 0.00 0.00 0.00 2.01
2607 5137 7.449704 AGAAAAGTCAGAGAAAGCCATATTGTT 59.550 33.333 0.00 0.00 0.00 2.83
2608 5138 6.944862 AGAAAAGTCAGAGAAAGCCATATTGT 59.055 34.615 0.00 0.00 0.00 2.71
2609 5139 7.249147 CAGAAAAGTCAGAGAAAGCCATATTG 58.751 38.462 0.00 0.00 0.00 1.90
2610 5140 6.376581 CCAGAAAAGTCAGAGAAAGCCATATT 59.623 38.462 0.00 0.00 0.00 1.28
2611 5141 5.884792 CCAGAAAAGTCAGAGAAAGCCATAT 59.115 40.000 0.00 0.00 0.00 1.78
2612 5142 5.248640 CCAGAAAAGTCAGAGAAAGCCATA 58.751 41.667 0.00 0.00 0.00 2.74
2613 5143 4.077822 CCAGAAAAGTCAGAGAAAGCCAT 58.922 43.478 0.00 0.00 0.00 4.40
2614 5144 3.480470 CCAGAAAAGTCAGAGAAAGCCA 58.520 45.455 0.00 0.00 0.00 4.75
2627 5157 7.122650 TGGAAATTTATAGTGAGCCCAGAAAAG 59.877 37.037 0.00 0.00 0.00 2.27
2810 5342 2.232941 AGAAAGGCGACGATCAACCTTA 59.767 45.455 0.00 0.00 41.65 2.69
2992 5524 0.830023 TTGGCCACCCTTAACCTTGC 60.830 55.000 3.88 0.00 0.00 4.01
3053 5585 1.067000 TGTCGTATACCCAAACCACCG 60.067 52.381 0.00 0.00 0.00 4.94
3195 5727 2.283529 CCGTGTCCCTGCTACTGGT 61.284 63.158 0.00 0.00 0.00 4.00
3369 5901 1.003355 GCACTGAGCAAGCTGGGTA 60.003 57.895 0.00 0.00 44.79 3.69
3400 5932 0.852155 TATGGCCCATGCTCCATTGA 59.148 50.000 18.24 3.46 42.62 2.57
3408 5940 2.051334 TGTAGTTGTATGGCCCATGC 57.949 50.000 6.46 5.51 0.00 4.06
3415 5947 9.482627 GAGAAAGATTAGGATGTAGTTGTATGG 57.517 37.037 0.00 0.00 0.00 2.74
3473 6007 4.386049 GGAGTAACATCTGACAACAGTTCG 59.614 45.833 0.00 0.00 43.81 3.95
3492 6026 6.542821 TGTCTTCATTCAGTAAATTGGGAGT 58.457 36.000 0.00 0.00 0.00 3.85
3584 6119 4.563786 GGTTCAAAAGTTGTCAAAACCCCA 60.564 41.667 3.99 0.00 31.29 4.96
3817 6355 2.584835 ACAAGCCAAAGTATCCAGCA 57.415 45.000 0.00 0.00 0.00 4.41
3836 6374 3.102972 AGCTAGAATGTCAGGAGCTGAA 58.897 45.455 0.00 0.00 42.46 3.02
3920 6458 1.209504 TGCCATAGGGTAAGAGCACAC 59.790 52.381 0.00 0.00 36.17 3.82
3929 6467 2.495409 CCGAGCGTGCCATAGGGTA 61.495 63.158 0.00 0.00 36.17 3.69
3945 6483 2.076863 GTTGAAGACCCTGTCATTCCG 58.923 52.381 0.00 0.00 34.60 4.30
4049 6587 5.396772 CCAAAACTGTAGATCATCCCTAGCA 60.397 44.000 0.00 0.00 0.00 3.49
4128 6667 2.863137 GCAGAAGCATAGGAAAGAGACG 59.137 50.000 0.00 0.00 41.58 4.18
4148 6687 1.202452 AGGCACAAGCAAAAACAGAGC 60.202 47.619 0.00 0.00 44.61 4.09
4149 6688 2.861935 CAAGGCACAAGCAAAAACAGAG 59.138 45.455 0.00 0.00 44.61 3.35
4152 6691 1.338484 TGCAAGGCACAAGCAAAAACA 60.338 42.857 0.00 0.00 44.61 2.83
4153 6692 1.367659 TGCAAGGCACAAGCAAAAAC 58.632 45.000 0.00 0.00 44.61 2.43
4154 6693 3.849002 TGCAAGGCACAAGCAAAAA 57.151 42.105 0.00 0.00 44.61 1.94
4290 6832 7.284034 CCCAAATGTCTTTCTATAACTCTGCAT 59.716 37.037 0.00 0.00 0.00 3.96
4532 7075 4.393062 ACTTTCATCAATCGCTTCGTCAAT 59.607 37.500 0.00 0.00 0.00 2.57
4612 7155 5.676079 GCCGTTCTGCAATCTATAGCAAAAA 60.676 40.000 0.00 0.00 40.73 1.94
4613 7156 4.201910 GCCGTTCTGCAATCTATAGCAAAA 60.202 41.667 0.00 0.00 40.73 2.44
4617 7160 2.760374 AGCCGTTCTGCAATCTATAGC 58.240 47.619 0.00 0.00 0.00 2.97
4633 7176 1.135315 CTTGGAACGCATCAAGCCG 59.865 57.895 0.00 0.00 41.38 5.52
4668 7211 4.023291 AGTACATGGCCAGGTAATTTTGG 58.977 43.478 30.38 2.90 37.53 3.28
4678 7221 6.260936 CCAAAAATACTAGAGTACATGGCCAG 59.739 42.308 13.05 6.08 32.72 4.85
4892 7435 4.571372 TTTTGCGGGGTACAAACTTTAG 57.429 40.909 0.00 0.00 36.77 1.85
4920 7463 9.763465 CGACAAGAAGAAACTTACAAACTTAAA 57.237 29.630 0.00 0.00 0.00 1.52
4921 7464 9.153721 TCGACAAGAAGAAACTTACAAACTTAA 57.846 29.630 0.00 0.00 0.00 1.85
4922 7465 8.598075 GTCGACAAGAAGAAACTTACAAACTTA 58.402 33.333 11.55 0.00 0.00 2.24
5005 7576 9.362151 TGGACCATTACTTAAAAGAAATTGAGT 57.638 29.630 0.00 0.00 0.00 3.41
5177 7750 6.037830 ACACACAGTTTGAATAAGTACGCTTT 59.962 34.615 0.00 0.00 36.22 3.51
5400 7973 5.353123 TGCATTCGGAAGGTAGTTTACATTC 59.647 40.000 4.19 5.36 45.72 2.67
5415 7988 0.955428 GCTTGGTGAGTGCATTCGGA 60.955 55.000 4.63 0.00 0.00 4.55
5531 8104 2.430465 GCATGAGAAGCTCCTTGTTCA 58.570 47.619 0.00 0.00 0.00 3.18
5607 8180 1.761784 CCATTCTCCACTAGCTGCTCT 59.238 52.381 4.91 0.00 0.00 4.09
5898 8473 1.477553 TGAGCAATTGGGCCTTCATC 58.522 50.000 4.53 0.00 0.00 2.92
5900 8475 1.344114 GTTTGAGCAATTGGGCCTTCA 59.656 47.619 4.53 0.00 0.00 3.02
5928 8503 5.982356 TCTCATGTCCTCAAGAATAAGGTG 58.018 41.667 0.00 0.00 34.12 4.00
6055 8632 5.396884 GGAGGGAGTAGCTTTTATGTGACAT 60.397 44.000 2.65 2.65 0.00 3.06
6073 8650 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
6074 8651 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
6075 8652 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
6076 8653 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
6077 8654 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
6080 8657 5.798434 GCAAAAACGTCTTACATTATGGGAC 59.202 40.000 0.00 1.75 0.00 4.46
6081 8658 5.473846 TGCAAAAACGTCTTACATTATGGGA 59.526 36.000 0.00 0.00 0.00 4.37
6082 8659 5.704888 TGCAAAAACGTCTTACATTATGGG 58.295 37.500 0.00 0.00 0.00 4.00
6083 8660 6.183359 GCTTGCAAAAACGTCTTACATTATGG 60.183 38.462 0.00 0.00 0.00 2.74
6084 8661 6.582295 AGCTTGCAAAAACGTCTTACATTATG 59.418 34.615 0.00 0.00 0.00 1.90
6085 8662 6.677913 AGCTTGCAAAAACGTCTTACATTAT 58.322 32.000 0.00 0.00 0.00 1.28
6086 8663 6.067263 AGCTTGCAAAAACGTCTTACATTA 57.933 33.333 0.00 0.00 0.00 1.90
6087 8664 4.932146 AGCTTGCAAAAACGTCTTACATT 58.068 34.783 0.00 0.00 0.00 2.71
6088 8665 4.568152 AGCTTGCAAAAACGTCTTACAT 57.432 36.364 0.00 0.00 0.00 2.29
6089 8666 5.682943 ATAGCTTGCAAAAACGTCTTACA 57.317 34.783 0.00 0.00 0.00 2.41
6090 8667 9.422196 CTAATATAGCTTGCAAAAACGTCTTAC 57.578 33.333 0.00 0.00 0.00 2.34
6116 8693 9.233232 CCCATAATATAAGACGTTTTTGAAAGC 57.767 33.333 0.00 0.00 0.00 3.51
6119 8696 8.605746 CGTCCCATAATATAAGACGTTTTTGAA 58.394 33.333 13.04 0.00 43.89 2.69
6120 8697 7.225145 CCGTCCCATAATATAAGACGTTTTTGA 59.775 37.037 17.31 0.00 46.62 2.69
6121 8698 7.225145 TCCGTCCCATAATATAAGACGTTTTTG 59.775 37.037 17.31 7.05 46.62 2.44
6122 8699 7.274447 TCCGTCCCATAATATAAGACGTTTTT 58.726 34.615 17.31 0.00 46.62 1.94
6123 8700 6.819284 TCCGTCCCATAATATAAGACGTTTT 58.181 36.000 17.31 0.00 46.62 2.43
6124 8701 6.409524 TCCGTCCCATAATATAAGACGTTT 57.590 37.500 17.31 0.00 46.62 3.60
6125 8702 6.209986 TGATCCGTCCCATAATATAAGACGTT 59.790 38.462 17.31 8.83 46.62 3.99
6126 8703 5.713389 TGATCCGTCCCATAATATAAGACGT 59.287 40.000 17.31 0.00 46.62 4.34
6128 8705 7.171630 ACTGATCCGTCCCATAATATAAGAC 57.828 40.000 0.00 0.00 0.00 3.01
6129 8706 7.891712 TGTACTGATCCGTCCCATAATATAAGA 59.108 37.037 0.00 0.00 0.00 2.10
6130 8707 8.063200 TGTACTGATCCGTCCCATAATATAAG 57.937 38.462 0.00 0.00 0.00 1.73
6131 8708 8.474831 CATGTACTGATCCGTCCCATAATATAA 58.525 37.037 0.00 0.00 0.00 0.98
6132 8709 7.837187 TCATGTACTGATCCGTCCCATAATATA 59.163 37.037 0.00 0.00 0.00 0.86
6133 8710 6.667848 TCATGTACTGATCCGTCCCATAATAT 59.332 38.462 0.00 0.00 0.00 1.28
6134 8711 6.014012 TCATGTACTGATCCGTCCCATAATA 58.986 40.000 0.00 0.00 0.00 0.98
6135 8712 4.838423 TCATGTACTGATCCGTCCCATAAT 59.162 41.667 0.00 0.00 0.00 1.28
6136 8713 4.219919 TCATGTACTGATCCGTCCCATAA 58.780 43.478 0.00 0.00 0.00 1.90
6137 8714 3.839778 TCATGTACTGATCCGTCCCATA 58.160 45.455 0.00 0.00 0.00 2.74
6138 8715 2.677914 TCATGTACTGATCCGTCCCAT 58.322 47.619 0.00 0.00 0.00 4.00
6139 8716 2.153034 TCATGTACTGATCCGTCCCA 57.847 50.000 0.00 0.00 0.00 4.37
6140 8717 3.753294 ATTCATGTACTGATCCGTCCC 57.247 47.619 0.00 0.00 32.72 4.46
6141 8718 7.159322 AGTATATTCATGTACTGATCCGTCC 57.841 40.000 0.00 0.00 34.10 4.79
6149 8726 4.386954 CGCTGCCAGTATATTCATGTACTG 59.613 45.833 13.96 13.96 46.02 2.74
6150 8727 4.560128 CGCTGCCAGTATATTCATGTACT 58.440 43.478 0.00 0.00 35.46 2.73
6151 8728 3.679980 CCGCTGCCAGTATATTCATGTAC 59.320 47.826 0.00 0.00 0.00 2.90
6152 8729 3.323691 ACCGCTGCCAGTATATTCATGTA 59.676 43.478 0.00 0.00 0.00 2.29
6153 8730 2.104792 ACCGCTGCCAGTATATTCATGT 59.895 45.455 0.00 0.00 0.00 3.21
6154 8731 2.481568 CACCGCTGCCAGTATATTCATG 59.518 50.000 0.00 0.00 0.00 3.07
6172 8749 2.167487 TGCAAAGACCAAAAGGAACACC 59.833 45.455 0.00 0.00 0.00 4.16
6251 8828 9.482627 CAAACTAGAGTAGAAGAGTGTTTTGAT 57.517 33.333 0.00 0.00 0.00 2.57
6252 8829 7.438459 GCAAACTAGAGTAGAAGAGTGTTTTGA 59.562 37.037 0.00 0.00 0.00 2.69
6309 8886 6.239036 GGAGACATTTCACTAAAAGCCTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
6312 8889 5.635120 AGGAGACATTTCACTAAAAGCCTT 58.365 37.500 0.00 0.00 0.00 4.35
6331 8908 5.048713 ACGCAAACCTCATTTAGAAAAGGAG 60.049 40.000 7.00 7.00 32.99 3.69
6344 8921 2.095314 TCGTCGTATTACGCAAACCTCA 60.095 45.455 11.33 0.00 42.21 3.86
6360 8938 1.726791 AGCAACACATAGCTTTCGTCG 59.273 47.619 0.00 0.00 38.01 5.12
6424 9002 1.656652 CCAAACCTCTATCGGCACAG 58.343 55.000 0.00 0.00 0.00 3.66
6425 9003 0.251916 CCCAAACCTCTATCGGCACA 59.748 55.000 0.00 0.00 0.00 4.57
6467 9045 1.462426 ATTTTGGGTACTGGGGTCCA 58.538 50.000 0.00 0.00 0.00 4.02
6476 9055 6.334102 TGTGGTGACATTTATTTTGGGTAC 57.666 37.500 0.00 0.00 46.14 3.34
6477 9056 8.651589 TTATGTGGTGACATTTATTTTGGGTA 57.348 30.769 0.00 0.00 46.14 3.69
6512 9091 0.798776 CGTCCAGTTGCATCTCCAAC 59.201 55.000 0.00 0.00 44.12 3.77
6522 9101 3.599343 TCCATCTTTGATCGTCCAGTTG 58.401 45.455 0.00 0.00 0.00 3.16
6525 9104 3.808466 TCTCCATCTTTGATCGTCCAG 57.192 47.619 0.00 0.00 0.00 3.86
6528 9107 6.088749 CGACATTATCTCCATCTTTGATCGTC 59.911 42.308 0.00 0.00 0.00 4.20
6530 9109 6.386897 CGACATTATCTCCATCTTTGATCG 57.613 41.667 0.00 0.00 0.00 3.69
6842 9421 0.034863 TCGCCTATTTGAACACCCCC 60.035 55.000 0.00 0.00 0.00 5.40
6843 9422 1.092348 GTCGCCTATTTGAACACCCC 58.908 55.000 0.00 0.00 0.00 4.95
6844 9423 2.109425 AGTCGCCTATTTGAACACCC 57.891 50.000 0.00 0.00 0.00 4.61
6845 9424 2.934553 GGTAGTCGCCTATTTGAACACC 59.065 50.000 0.00 0.00 0.00 4.16
6846 9425 3.592059 TGGTAGTCGCCTATTTGAACAC 58.408 45.455 0.00 0.00 0.00 3.32
6847 9426 3.965379 TGGTAGTCGCCTATTTGAACA 57.035 42.857 0.00 0.00 0.00 3.18
6848 9427 5.813080 ATTTGGTAGTCGCCTATTTGAAC 57.187 39.130 0.00 0.00 0.00 3.18
6849 9428 7.925043 TTAATTTGGTAGTCGCCTATTTGAA 57.075 32.000 0.00 0.00 0.00 2.69
6850 9429 7.925043 TTTAATTTGGTAGTCGCCTATTTGA 57.075 32.000 0.00 0.00 0.00 2.69
6851 9430 9.233232 GAATTTAATTTGGTAGTCGCCTATTTG 57.767 33.333 0.00 0.00 0.00 2.32
6852 9431 9.185680 AGAATTTAATTTGGTAGTCGCCTATTT 57.814 29.630 0.00 0.00 0.00 1.40
6853 9432 8.747538 AGAATTTAATTTGGTAGTCGCCTATT 57.252 30.769 0.00 0.00 0.00 1.73
6854 9433 8.747538 AAGAATTTAATTTGGTAGTCGCCTAT 57.252 30.769 0.00 0.00 0.00 2.57
6855 9434 8.570068 AAAGAATTTAATTTGGTAGTCGCCTA 57.430 30.769 0.00 0.00 35.86 3.93
6856 9435 7.462571 AAAGAATTTAATTTGGTAGTCGCCT 57.537 32.000 0.00 0.00 35.86 5.52
6857 9436 8.528917 AAAAAGAATTTAATTTGGTAGTCGCC 57.471 30.769 0.00 0.00 37.28 5.54
6881 9460 8.129211 GCTCTTGACTCTAAAAAGCAACTAAAA 58.871 33.333 0.00 0.00 0.00 1.52
6882 9461 7.282224 TGCTCTTGACTCTAAAAAGCAACTAAA 59.718 33.333 0.00 0.00 35.52 1.85
6883 9462 6.765989 TGCTCTTGACTCTAAAAAGCAACTAA 59.234 34.615 0.00 0.00 35.52 2.24
6884 9463 6.288294 TGCTCTTGACTCTAAAAAGCAACTA 58.712 36.000 0.00 0.00 35.52 2.24
6885 9464 5.126067 TGCTCTTGACTCTAAAAAGCAACT 58.874 37.500 0.00 0.00 35.52 3.16
6886 9465 5.237344 TCTGCTCTTGACTCTAAAAAGCAAC 59.763 40.000 0.00 0.00 37.78 4.17
6887 9466 5.368145 TCTGCTCTTGACTCTAAAAAGCAA 58.632 37.500 0.00 0.00 37.78 3.91
6888 9467 4.960938 TCTGCTCTTGACTCTAAAAAGCA 58.039 39.130 0.00 0.00 36.85 3.91
6889 9468 5.931441 TTCTGCTCTTGACTCTAAAAAGC 57.069 39.130 0.00 0.00 0.00 3.51
6896 9475 8.757877 AGAACTTATATTTCTGCTCTTGACTCT 58.242 33.333 0.00 0.00 31.88 3.24
6897 9476 8.940768 AGAACTTATATTTCTGCTCTTGACTC 57.059 34.615 0.00 0.00 31.88 3.36
6898 9477 9.732130 AAAGAACTTATATTTCTGCTCTTGACT 57.268 29.630 0.00 0.00 33.46 3.41
6914 9493 9.740710 ACCTAGTTGCATTTCTAAAGAACTTAT 57.259 29.630 0.00 0.00 33.13 1.73
6915 9494 8.999431 CACCTAGTTGCATTTCTAAAGAACTTA 58.001 33.333 0.00 0.00 33.13 2.24
6916 9495 7.719633 TCACCTAGTTGCATTTCTAAAGAACTT 59.280 33.333 0.00 0.00 33.13 2.66
6917 9496 7.224297 TCACCTAGTTGCATTTCTAAAGAACT 58.776 34.615 0.00 0.00 33.13 3.01
6918 9497 7.435068 TCACCTAGTTGCATTTCTAAAGAAC 57.565 36.000 0.00 0.00 33.13 3.01
6919 9498 9.162764 GTATCACCTAGTTGCATTTCTAAAGAA 57.837 33.333 0.00 0.00 0.00 2.52
6920 9499 8.318412 TGTATCACCTAGTTGCATTTCTAAAGA 58.682 33.333 0.00 0.00 0.00 2.52
6921 9500 8.492673 TGTATCACCTAGTTGCATTTCTAAAG 57.507 34.615 0.00 0.00 0.00 1.85
6922 9501 8.726988 GTTGTATCACCTAGTTGCATTTCTAAA 58.273 33.333 0.00 0.00 0.00 1.85
6923 9502 7.335924 GGTTGTATCACCTAGTTGCATTTCTAA 59.664 37.037 0.00 0.00 33.50 2.10
6924 9503 6.821665 GGTTGTATCACCTAGTTGCATTTCTA 59.178 38.462 0.00 0.00 33.50 2.10
6925 9504 5.648092 GGTTGTATCACCTAGTTGCATTTCT 59.352 40.000 0.00 0.00 33.50 2.52
6926 9505 5.163652 GGGTTGTATCACCTAGTTGCATTTC 60.164 44.000 0.00 0.00 36.97 2.17
6927 9506 4.705023 GGGTTGTATCACCTAGTTGCATTT 59.295 41.667 0.00 0.00 36.97 2.32
6928 9507 4.270008 GGGTTGTATCACCTAGTTGCATT 58.730 43.478 0.00 0.00 36.97 3.56
6929 9508 3.681594 CGGGTTGTATCACCTAGTTGCAT 60.682 47.826 0.00 0.00 36.97 3.96
6930 9509 2.354303 CGGGTTGTATCACCTAGTTGCA 60.354 50.000 0.00 0.00 36.97 4.08
6931 9510 2.093869 TCGGGTTGTATCACCTAGTTGC 60.094 50.000 0.00 0.00 36.97 4.17
6932 9511 3.880047 TCGGGTTGTATCACCTAGTTG 57.120 47.619 0.00 0.00 36.97 3.16
6933 9512 5.836898 TCATATCGGGTTGTATCACCTAGTT 59.163 40.000 0.00 0.00 36.97 2.24
6934 9513 5.391256 TCATATCGGGTTGTATCACCTAGT 58.609 41.667 0.00 0.00 36.97 2.57
6935 9514 5.977489 TCATATCGGGTTGTATCACCTAG 57.023 43.478 0.00 0.00 36.97 3.02
6936 9515 5.778241 ACATCATATCGGGTTGTATCACCTA 59.222 40.000 0.00 0.00 36.97 3.08
6937 9516 4.593206 ACATCATATCGGGTTGTATCACCT 59.407 41.667 0.00 0.00 36.97 4.00
6938 9517 4.690748 CACATCATATCGGGTTGTATCACC 59.309 45.833 0.00 0.00 35.88 4.02
6939 9518 5.297547 ACACATCATATCGGGTTGTATCAC 58.702 41.667 0.00 0.00 0.00 3.06
6940 9519 5.545063 ACACATCATATCGGGTTGTATCA 57.455 39.130 0.00 0.00 0.00 2.15
6941 9520 6.926826 TGTAACACATCATATCGGGTTGTATC 59.073 38.462 0.00 0.00 0.00 2.24
6942 9521 6.822442 TGTAACACATCATATCGGGTTGTAT 58.178 36.000 0.00 0.00 0.00 2.29
6943 9522 6.223351 TGTAACACATCATATCGGGTTGTA 57.777 37.500 0.00 0.00 0.00 2.41
6944 9523 5.092554 TGTAACACATCATATCGGGTTGT 57.907 39.130 0.00 0.00 0.00 3.32
6945 9524 6.618287 ATTGTAACACATCATATCGGGTTG 57.382 37.500 0.00 0.00 0.00 3.77
6946 9525 7.041372 GCTTATTGTAACACATCATATCGGGTT 60.041 37.037 0.00 0.00 0.00 4.11
6947 9526 6.426937 GCTTATTGTAACACATCATATCGGGT 59.573 38.462 0.00 0.00 0.00 5.28
6948 9527 6.650807 AGCTTATTGTAACACATCATATCGGG 59.349 38.462 0.00 0.00 0.00 5.14
6949 9528 7.658179 AGCTTATTGTAACACATCATATCGG 57.342 36.000 0.00 0.00 0.00 4.18
6950 9529 9.411801 ACTAGCTTATTGTAACACATCATATCG 57.588 33.333 0.00 0.00 0.00 2.92
6954 9533 9.046296 GCTTACTAGCTTATTGTAACACATCAT 57.954 33.333 0.00 0.00 44.27 2.45
6955 9534 8.420374 GCTTACTAGCTTATTGTAACACATCA 57.580 34.615 0.00 0.00 44.27 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.