Multiple sequence alignment - TraesCS6D01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G160900 chr6D 100.000 3455 0 0 1 3455 139307166 139310620 0.000000e+00 6381.0
1 TraesCS6D01G160900 chr6D 90.544 423 25 3 119 526 87469258 87468836 2.340000e-151 545.0
2 TraesCS6D01G160900 chr6D 81.292 449 35 23 114 526 38628339 38628774 5.560000e-83 318.0
3 TraesCS6D01G160900 chr6D 95.420 131 4 1 1 131 199710342 199710470 1.260000e-49 207.0
4 TraesCS6D01G160900 chr6D 84.138 145 11 3 404 536 68859405 68859549 2.800000e-26 130.0
5 TraesCS6D01G160900 chr6A 94.588 3012 75 31 523 3455 181893694 181896696 0.000000e+00 4578.0
6 TraesCS6D01G160900 chr6B 95.175 2922 73 27 538 3416 239282768 239285664 0.000000e+00 4553.0
7 TraesCS6D01G160900 chr6B 96.721 61 2 0 467 527 124627084 124627144 6.100000e-18 102.0
8 TraesCS6D01G160900 chr7D 93.659 410 22 4 118 524 594141857 594142265 8.200000e-171 610.0
9 TraesCS6D01G160900 chr7D 89.499 419 32 4 120 526 83807406 83807824 1.420000e-143 520.0
10 TraesCS6D01G160900 chr7D 83.721 129 10 9 403 524 500220502 500220626 1.010000e-20 111.0
11 TraesCS6D01G160900 chr7D 81.679 131 12 10 402 524 78206473 78206599 7.890000e-17 99.0
12 TraesCS6D01G160900 chr4D 90.261 421 21 5 119 527 41721994 41722406 1.830000e-147 532.0
13 TraesCS6D01G160900 chr4D 89.448 417 25 4 119 524 381095802 381095394 3.080000e-140 508.0
14 TraesCS6D01G160900 chr4D 96.875 128 2 1 1 128 251745756 251745631 2.700000e-51 213.0
15 TraesCS6D01G160900 chr4D 87.681 138 5 2 404 530 42266295 42266431 2.150000e-32 150.0
16 TraesCS6D01G160900 chr4D 89.552 67 5 2 476 541 488494907 488494972 2.210000e-12 84.2
17 TraesCS6D01G160900 chr4A 89.810 422 30 8 118 527 173472899 173473319 2.360000e-146 529.0
18 TraesCS6D01G160900 chr2D 89.623 424 22 6 118 526 127265803 127265387 1.420000e-143 520.0
19 TraesCS6D01G160900 chr2D 96.875 128 3 1 1 128 553122088 553122214 2.700000e-51 213.0
20 TraesCS6D01G160900 chr2D 95.420 131 5 1 1 131 489194685 489194556 1.260000e-49 207.0
21 TraesCS6D01G160900 chr2D 96.923 65 1 1 467 530 491814914 491814850 1.310000e-19 108.0
22 TraesCS6D01G160900 chr2D 82.707 133 12 10 401 526 552139477 552139605 1.310000e-19 108.0
23 TraesCS6D01G160900 chr7B 88.761 436 31 6 118 536 196377452 196377886 5.110000e-143 518.0
24 TraesCS6D01G160900 chr3D 88.915 424 25 6 118 526 522087911 522087495 1.430000e-138 503.0
25 TraesCS6D01G160900 chr3D 97.619 126 2 1 1 125 588327440 588327315 7.510000e-52 215.0
26 TraesCS6D01G160900 chr3D 96.850 127 4 0 1 127 165072924 165072798 2.700000e-51 213.0
27 TraesCS6D01G160900 chr3D 84.564 149 12 1 393 530 451197466 451197318 1.670000e-28 137.0
28 TraesCS6D01G160900 chr3D 96.429 56 2 0 476 531 335198392 335198447 3.670000e-15 93.5
29 TraesCS6D01G160900 chrUn 79.446 433 33 14 118 524 218121928 218121526 4.430000e-64 255.0
30 TraesCS6D01G160900 chrUn 97.638 127 2 1 1 126 44958542 44958416 2.090000e-52 217.0
31 TraesCS6D01G160900 chr5D 96.875 128 3 1 1 128 356471932 356472058 2.700000e-51 213.0
32 TraesCS6D01G160900 chr1D 97.541 122 3 0 1 122 163852740 163852861 3.490000e-50 209.0
33 TraesCS6D01G160900 chr1D 95.082 61 2 1 478 537 356882051 356881991 1.020000e-15 95.3
34 TraesCS6D01G160900 chr5B 83.206 131 11 9 401 524 87238888 87239014 3.650000e-20 110.0
35 TraesCS6D01G160900 chr3A 92.647 68 5 0 451 518 686079467 686079534 7.890000e-17 99.0
36 TraesCS6D01G160900 chr3A 90.541 74 7 0 451 524 686081770 686081843 7.890000e-17 99.0
37 TraesCS6D01G160900 chr3A 91.549 71 6 0 454 524 686104413 686104483 7.890000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G160900 chr6D 139307166 139310620 3454 False 6381 6381 100.000 1 3455 1 chr6D.!!$F3 3454
1 TraesCS6D01G160900 chr6A 181893694 181896696 3002 False 4578 4578 94.588 523 3455 1 chr6A.!!$F1 2932
2 TraesCS6D01G160900 chr6B 239282768 239285664 2896 False 4553 4553 95.175 538 3416 1 chr6B.!!$F2 2878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 445 0.033228 CTGCCGACCCAAATGCAAAA 59.967 50.0 0.0 0.0 32.58 2.44 F
446 447 0.033366 GCCGACCCAAATGCAAAACT 59.967 50.0 0.0 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 2340 3.470562 GTCGAAGAATGCGTTGAAGAAC 58.529 45.455 0.00 0.0 39.14 3.01 R
2643 2746 7.923888 GCGATACCTCGGTATATGAACTATAA 58.076 38.462 8.53 0.0 45.15 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.772973 TGACTTATTTATGTTGTAGAGTTGTGT 57.227 29.630 0.00 0.00 0.00 3.72
37 38 6.612247 TTATGTTGTAGAGTTGTGTTGTGG 57.388 37.500 0.00 0.00 0.00 4.17
38 39 3.945346 TGTTGTAGAGTTGTGTTGTGGT 58.055 40.909 0.00 0.00 0.00 4.16
39 40 5.087391 TGTTGTAGAGTTGTGTTGTGGTA 57.913 39.130 0.00 0.00 0.00 3.25
40 41 5.676552 TGTTGTAGAGTTGTGTTGTGGTAT 58.323 37.500 0.00 0.00 0.00 2.73
41 42 5.756347 TGTTGTAGAGTTGTGTTGTGGTATC 59.244 40.000 0.00 0.00 0.00 2.24
42 43 5.801531 TGTAGAGTTGTGTTGTGGTATCT 57.198 39.130 0.00 0.00 0.00 1.98
43 44 6.169557 TGTAGAGTTGTGTTGTGGTATCTT 57.830 37.500 0.00 0.00 0.00 2.40
44 45 6.220930 TGTAGAGTTGTGTTGTGGTATCTTC 58.779 40.000 0.00 0.00 0.00 2.87
45 46 4.642429 AGAGTTGTGTTGTGGTATCTTCC 58.358 43.478 0.00 0.00 0.00 3.46
46 47 3.751518 AGTTGTGTTGTGGTATCTTCCC 58.248 45.455 0.00 0.00 0.00 3.97
47 48 2.465860 TGTGTTGTGGTATCTTCCCG 57.534 50.000 0.00 0.00 0.00 5.14
48 49 1.695242 TGTGTTGTGGTATCTTCCCGT 59.305 47.619 0.00 0.00 0.00 5.28
49 50 2.073816 GTGTTGTGGTATCTTCCCGTG 58.926 52.381 0.00 0.00 0.00 4.94
50 51 1.972075 TGTTGTGGTATCTTCCCGTGA 59.028 47.619 0.00 0.00 0.00 4.35
51 52 2.028476 TGTTGTGGTATCTTCCCGTGAG 60.028 50.000 0.00 0.00 0.00 3.51
52 53 1.933021 TGTGGTATCTTCCCGTGAGT 58.067 50.000 0.00 0.00 0.00 3.41
53 54 1.822990 TGTGGTATCTTCCCGTGAGTC 59.177 52.381 0.00 0.00 0.00 3.36
54 55 1.136500 GTGGTATCTTCCCGTGAGTCC 59.864 57.143 0.00 0.00 0.00 3.85
55 56 0.751452 GGTATCTTCCCGTGAGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
56 57 1.688627 GGTATCTTCCCGTGAGTCCCT 60.689 57.143 0.00 0.00 0.00 4.20
57 58 1.409427 GTATCTTCCCGTGAGTCCCTG 59.591 57.143 0.00 0.00 0.00 4.45
58 59 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
59 60 0.898789 TCTTCCCGTGAGTCCCTGAC 60.899 60.000 0.00 0.00 0.00 3.51
60 61 1.889530 CTTCCCGTGAGTCCCTGACC 61.890 65.000 0.00 0.00 32.18 4.02
61 62 2.283966 CCCGTGAGTCCCTGACCT 60.284 66.667 0.00 0.00 32.18 3.85
62 63 1.913762 CCCGTGAGTCCCTGACCTT 60.914 63.158 0.00 0.00 32.18 3.50
63 64 1.293498 CCGTGAGTCCCTGACCTTG 59.707 63.158 0.00 0.00 32.18 3.61
64 65 1.185618 CCGTGAGTCCCTGACCTTGA 61.186 60.000 0.00 0.00 32.18 3.02
65 66 0.898320 CGTGAGTCCCTGACCTTGAT 59.102 55.000 0.00 0.00 32.18 2.57
66 67 1.134965 CGTGAGTCCCTGACCTTGATC 60.135 57.143 0.00 0.00 32.18 2.92
67 68 1.134965 GTGAGTCCCTGACCTTGATCG 60.135 57.143 0.00 0.00 32.18 3.69
68 69 1.187087 GAGTCCCTGACCTTGATCGT 58.813 55.000 0.00 0.00 32.18 3.73
69 70 2.291346 TGAGTCCCTGACCTTGATCGTA 60.291 50.000 0.00 0.00 32.18 3.43
70 71 2.099427 GAGTCCCTGACCTTGATCGTAC 59.901 54.545 0.00 0.00 32.18 3.67
71 72 1.822990 GTCCCTGACCTTGATCGTACA 59.177 52.381 0.00 0.00 0.00 2.90
72 73 1.822990 TCCCTGACCTTGATCGTACAC 59.177 52.381 0.00 0.00 0.00 2.90
73 74 1.548719 CCCTGACCTTGATCGTACACA 59.451 52.381 0.00 0.00 0.00 3.72
74 75 2.168521 CCCTGACCTTGATCGTACACAT 59.831 50.000 0.00 0.00 0.00 3.21
75 76 3.369471 CCCTGACCTTGATCGTACACATT 60.369 47.826 0.00 0.00 0.00 2.71
76 77 4.253685 CCTGACCTTGATCGTACACATTT 58.746 43.478 0.00 0.00 0.00 2.32
77 78 4.093408 CCTGACCTTGATCGTACACATTTG 59.907 45.833 0.00 0.00 0.00 2.32
78 79 3.435327 TGACCTTGATCGTACACATTTGC 59.565 43.478 0.00 0.00 0.00 3.68
79 80 2.415168 ACCTTGATCGTACACATTTGCG 59.585 45.455 0.00 0.00 0.00 4.85
80 81 2.415168 CCTTGATCGTACACATTTGCGT 59.585 45.455 0.00 0.00 0.00 5.24
81 82 3.407252 CTTGATCGTACACATTTGCGTG 58.593 45.455 0.00 0.00 42.81 5.34
82 83 1.127766 TGATCGTACACATTTGCGTGC 59.872 47.619 0.00 0.00 40.73 5.34
83 84 1.127766 GATCGTACACATTTGCGTGCA 59.872 47.619 0.00 0.00 40.73 4.57
84 85 1.152510 TCGTACACATTTGCGTGCAT 58.847 45.000 0.00 0.00 40.73 3.96
85 86 1.136113 TCGTACACATTTGCGTGCATG 60.136 47.619 0.09 0.09 40.73 4.06
86 87 1.136113 CGTACACATTTGCGTGCATGA 60.136 47.619 10.93 0.00 40.73 3.07
87 88 2.476018 CGTACACATTTGCGTGCATGAT 60.476 45.455 10.93 0.00 40.73 2.45
88 89 2.728690 ACACATTTGCGTGCATGATT 57.271 40.000 10.93 0.00 40.73 2.57
89 90 3.846423 ACACATTTGCGTGCATGATTA 57.154 38.095 10.93 0.00 40.73 1.75
90 91 3.761657 ACACATTTGCGTGCATGATTAG 58.238 40.909 10.93 0.00 40.73 1.73
91 92 3.191162 ACACATTTGCGTGCATGATTAGT 59.809 39.130 10.93 0.00 40.73 2.24
92 93 3.544682 CACATTTGCGTGCATGATTAGTG 59.455 43.478 10.93 7.27 0.00 2.74
93 94 3.191162 ACATTTGCGTGCATGATTAGTGT 59.809 39.130 10.93 4.47 0.00 3.55
94 95 4.394610 ACATTTGCGTGCATGATTAGTGTA 59.605 37.500 10.93 0.00 0.00 2.90
95 96 4.335082 TTTGCGTGCATGATTAGTGTAC 57.665 40.909 10.93 0.00 0.00 2.90
98 99 2.536365 CGTGCATGATTAGTGTACGGT 58.464 47.619 0.00 0.00 46.91 4.83
99 100 2.534349 CGTGCATGATTAGTGTACGGTC 59.466 50.000 0.00 0.00 46.91 4.79
100 101 3.517602 GTGCATGATTAGTGTACGGTCA 58.482 45.455 0.00 0.00 0.00 4.02
101 102 3.930229 GTGCATGATTAGTGTACGGTCAA 59.070 43.478 0.00 0.00 0.00 3.18
102 103 4.390603 GTGCATGATTAGTGTACGGTCAAA 59.609 41.667 0.00 0.00 0.00 2.69
103 104 5.064707 GTGCATGATTAGTGTACGGTCAAAT 59.935 40.000 0.00 0.00 0.00 2.32
104 105 5.293324 TGCATGATTAGTGTACGGTCAAATC 59.707 40.000 0.00 0.00 0.00 2.17
105 106 5.556382 GCATGATTAGTGTACGGTCAAATCG 60.556 44.000 0.00 0.00 0.00 3.34
106 107 4.426416 TGATTAGTGTACGGTCAAATCGG 58.574 43.478 0.00 0.00 0.00 4.18
107 108 2.945447 TAGTGTACGGTCAAATCGGG 57.055 50.000 0.00 0.00 0.00 5.14
108 109 0.248289 AGTGTACGGTCAAATCGGGG 59.752 55.000 0.00 0.00 0.00 5.73
109 110 0.741927 GTGTACGGTCAAATCGGGGG 60.742 60.000 0.00 0.00 0.00 5.40
110 111 1.816679 GTACGGTCAAATCGGGGGC 60.817 63.158 0.00 0.00 0.00 5.80
111 112 3.374012 TACGGTCAAATCGGGGGCG 62.374 63.158 0.00 0.00 0.00 6.13
112 113 4.770874 CGGTCAAATCGGGGGCGT 62.771 66.667 0.00 0.00 0.00 5.68
113 114 2.822701 GGTCAAATCGGGGGCGTC 60.823 66.667 0.00 0.00 0.00 5.19
114 115 2.046700 GTCAAATCGGGGGCGTCA 60.047 61.111 0.00 0.00 0.00 4.35
115 116 2.046700 TCAAATCGGGGGCGTCAC 60.047 61.111 0.00 0.00 0.00 3.67
116 117 2.359354 CAAATCGGGGGCGTCACA 60.359 61.111 0.00 0.00 0.00 3.58
117 118 2.359478 AAATCGGGGGCGTCACAC 60.359 61.111 0.00 0.00 0.00 3.82
118 119 3.912745 AAATCGGGGGCGTCACACC 62.913 63.158 0.00 0.00 0.00 4.16
123 124 4.388499 GGGGCGTCACACCGACAT 62.388 66.667 0.00 0.00 45.70 3.06
124 125 3.118454 GGGCGTCACACCGACATG 61.118 66.667 0.00 0.00 45.70 3.21
125 126 3.788766 GGCGTCACACCGACATGC 61.789 66.667 0.00 0.00 45.70 4.06
126 127 2.738521 GCGTCACACCGACATGCT 60.739 61.111 0.00 0.00 45.70 3.79
127 128 2.730672 GCGTCACACCGACATGCTC 61.731 63.158 0.00 0.00 45.70 4.26
128 129 1.372872 CGTCACACCGACATGCTCA 60.373 57.895 0.00 0.00 45.70 4.26
129 130 0.943835 CGTCACACCGACATGCTCAA 60.944 55.000 0.00 0.00 45.70 3.02
130 131 0.792640 GTCACACCGACATGCTCAAG 59.207 55.000 0.00 0.00 44.69 3.02
131 132 0.392706 TCACACCGACATGCTCAAGT 59.607 50.000 0.00 0.00 0.00 3.16
132 133 1.202639 TCACACCGACATGCTCAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
133 134 1.195448 CACACCGACATGCTCAAGTTC 59.805 52.381 0.00 0.00 0.00 3.01
134 135 0.439985 CACCGACATGCTCAAGTTCG 59.560 55.000 0.00 0.00 0.00 3.95
135 136 0.317160 ACCGACATGCTCAAGTTCGA 59.683 50.000 0.00 0.00 0.00 3.71
136 137 0.716108 CCGACATGCTCAAGTTCGAC 59.284 55.000 0.00 0.00 0.00 4.20
137 138 0.363512 CGACATGCTCAAGTTCGACG 59.636 55.000 0.00 0.00 0.00 5.12
138 139 1.698165 GACATGCTCAAGTTCGACGA 58.302 50.000 0.00 0.00 0.00 4.20
139 140 1.387084 GACATGCTCAAGTTCGACGAC 59.613 52.381 0.00 0.00 0.00 4.34
140 141 0.363512 CATGCTCAAGTTCGACGACG 59.636 55.000 0.00 0.00 41.26 5.12
152 153 1.865340 TCGACGACGAGTGATCTATGG 59.135 52.381 5.75 0.00 43.81 2.74
153 154 1.660614 CGACGACGAGTGATCTATGGC 60.661 57.143 0.00 0.00 42.66 4.40
154 155 0.308068 ACGACGAGTGATCTATGGCG 59.692 55.000 0.00 0.00 36.92 5.69
155 156 0.386100 CGACGAGTGATCTATGGCGG 60.386 60.000 0.00 0.00 30.29 6.13
156 157 0.664767 GACGAGTGATCTATGGCGGC 60.665 60.000 0.00 0.00 0.00 6.53
157 158 1.730902 CGAGTGATCTATGGCGGCG 60.731 63.158 0.51 0.51 0.00 6.46
158 159 1.660355 GAGTGATCTATGGCGGCGA 59.340 57.895 12.98 0.00 0.00 5.54
159 160 0.387878 GAGTGATCTATGGCGGCGAG 60.388 60.000 12.98 4.23 0.00 5.03
160 161 1.373497 GTGATCTATGGCGGCGAGG 60.373 63.158 12.98 0.00 0.00 4.63
161 162 2.262915 GATCTATGGCGGCGAGGG 59.737 66.667 12.98 0.00 0.00 4.30
162 163 3.941657 GATCTATGGCGGCGAGGGC 62.942 68.421 12.98 0.00 38.90 5.19
164 165 4.241555 CTATGGCGGCGAGGGCTT 62.242 66.667 12.98 0.00 39.81 4.35
165 166 3.757248 CTATGGCGGCGAGGGCTTT 62.757 63.158 12.98 0.00 39.81 3.51
166 167 3.338275 TATGGCGGCGAGGGCTTTT 62.338 57.895 12.98 0.00 39.81 2.27
167 168 2.830186 TATGGCGGCGAGGGCTTTTT 62.830 55.000 12.98 0.00 39.81 1.94
185 186 3.043998 TTTTTGTATGCCGGCAGGT 57.956 47.368 35.36 21.86 40.50 4.00
186 187 0.600557 TTTTTGTATGCCGGCAGGTG 59.399 50.000 35.36 0.00 40.50 4.00
187 188 0.538516 TTTTGTATGCCGGCAGGTGT 60.539 50.000 35.36 20.64 40.50 4.16
188 189 1.240641 TTTGTATGCCGGCAGGTGTG 61.241 55.000 35.36 0.00 40.50 3.82
198 199 3.434319 CAGGTGTGCCGGCATGAC 61.434 66.667 35.23 29.57 40.50 3.06
199 200 4.722700 AGGTGTGCCGGCATGACC 62.723 66.667 36.43 36.43 40.50 4.02
201 202 3.737172 GTGTGCCGGCATGACCAC 61.737 66.667 35.23 29.85 39.03 4.16
206 207 4.838152 CCGGCATGACCACGGGAG 62.838 72.222 0.00 0.00 43.69 4.30
224 225 4.889856 CCGCGATGGCATGGTCGA 62.890 66.667 20.86 0.00 40.11 4.20
225 226 2.889988 CGCGATGGCATGGTCGAA 60.890 61.111 12.75 0.00 40.11 3.71
226 227 2.709475 GCGATGGCATGGTCGAAC 59.291 61.111 12.75 0.00 40.11 3.95
227 228 1.815421 GCGATGGCATGGTCGAACT 60.815 57.895 12.75 0.00 40.11 3.01
228 229 1.766143 GCGATGGCATGGTCGAACTC 61.766 60.000 12.75 0.00 40.11 3.01
229 230 0.460109 CGATGGCATGGTCGAACTCA 60.460 55.000 3.81 0.00 40.11 3.41
230 231 1.737838 GATGGCATGGTCGAACTCAA 58.262 50.000 3.81 0.00 0.00 3.02
231 232 1.667724 GATGGCATGGTCGAACTCAAG 59.332 52.381 3.81 0.00 0.00 3.02
232 233 0.396435 TGGCATGGTCGAACTCAAGT 59.604 50.000 0.33 0.00 0.00 3.16
233 234 1.079503 GGCATGGTCGAACTCAAGTC 58.920 55.000 0.33 0.00 0.00 3.01
234 235 1.079503 GCATGGTCGAACTCAAGTCC 58.920 55.000 0.33 0.00 0.00 3.85
235 236 1.726853 CATGGTCGAACTCAAGTCCC 58.273 55.000 0.33 0.00 0.00 4.46
236 237 1.001974 CATGGTCGAACTCAAGTCCCA 59.998 52.381 0.33 0.00 0.00 4.37
237 238 0.391597 TGGTCGAACTCAAGTCCCAC 59.608 55.000 0.33 0.00 0.00 4.61
238 239 0.320508 GGTCGAACTCAAGTCCCACC 60.321 60.000 0.00 0.00 0.00 4.61
239 240 0.320508 GTCGAACTCAAGTCCCACCC 60.321 60.000 0.00 0.00 0.00 4.61
240 241 0.471211 TCGAACTCAAGTCCCACCCT 60.471 55.000 0.00 0.00 0.00 4.34
241 242 0.396811 CGAACTCAAGTCCCACCCTT 59.603 55.000 0.00 0.00 0.00 3.95
242 243 1.202770 CGAACTCAAGTCCCACCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
243 244 2.748465 CGAACTCAAGTCCCACCCTTTT 60.748 50.000 0.00 0.00 0.00 2.27
244 245 3.296854 GAACTCAAGTCCCACCCTTTTT 58.703 45.455 0.00 0.00 0.00 1.94
260 261 1.937278 TTTTTGTGTGCTGGCATGTG 58.063 45.000 0.00 0.00 0.00 3.21
261 262 0.822811 TTTTGTGTGCTGGCATGTGT 59.177 45.000 0.00 0.00 0.00 3.72
262 263 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
305 306 5.627499 TCAGCATGAACTGTGGTATTTTC 57.373 39.130 0.00 0.00 45.97 2.29
306 307 5.316167 TCAGCATGAACTGTGGTATTTTCT 58.684 37.500 0.00 0.00 45.97 2.52
307 308 5.181811 TCAGCATGAACTGTGGTATTTTCTG 59.818 40.000 0.00 0.00 45.97 3.02
308 309 5.181811 CAGCATGAACTGTGGTATTTTCTGA 59.818 40.000 0.00 0.00 39.69 3.27
309 310 5.769662 AGCATGAACTGTGGTATTTTCTGAA 59.230 36.000 0.00 0.00 0.00 3.02
310 311 6.072286 AGCATGAACTGTGGTATTTTCTGAAG 60.072 38.462 0.00 0.00 0.00 3.02
311 312 5.689383 TGAACTGTGGTATTTTCTGAAGC 57.311 39.130 0.00 0.00 0.00 3.86
312 313 4.518970 TGAACTGTGGTATTTTCTGAAGCC 59.481 41.667 0.00 0.00 0.00 4.35
313 314 3.074412 ACTGTGGTATTTTCTGAAGCCG 58.926 45.455 0.00 0.00 0.00 5.52
314 315 3.244422 ACTGTGGTATTTTCTGAAGCCGA 60.244 43.478 0.00 0.00 0.00 5.54
315 316 3.071479 TGTGGTATTTTCTGAAGCCGAC 58.929 45.455 0.00 0.00 0.00 4.79
316 317 3.071479 GTGGTATTTTCTGAAGCCGACA 58.929 45.455 0.00 0.00 0.00 4.35
317 318 3.500680 GTGGTATTTTCTGAAGCCGACAA 59.499 43.478 0.00 0.00 0.00 3.18
318 319 4.023536 GTGGTATTTTCTGAAGCCGACAAA 60.024 41.667 0.00 0.00 0.00 2.83
319 320 4.215399 TGGTATTTTCTGAAGCCGACAAAG 59.785 41.667 0.00 0.00 0.00 2.77
320 321 4.215613 GGTATTTTCTGAAGCCGACAAAGT 59.784 41.667 0.00 0.00 0.00 2.66
321 322 5.410439 GGTATTTTCTGAAGCCGACAAAGTA 59.590 40.000 0.00 0.00 0.00 2.24
322 323 6.093633 GGTATTTTCTGAAGCCGACAAAGTAT 59.906 38.462 0.00 0.00 0.00 2.12
323 324 5.356882 TTTTCTGAAGCCGACAAAGTATG 57.643 39.130 0.00 0.00 0.00 2.39
324 325 2.346803 TCTGAAGCCGACAAAGTATGC 58.653 47.619 0.00 0.00 0.00 3.14
325 326 1.398390 CTGAAGCCGACAAAGTATGCC 59.602 52.381 0.00 0.00 0.00 4.40
326 327 0.373716 GAAGCCGACAAAGTATGCCG 59.626 55.000 0.00 0.00 34.34 5.69
329 330 2.701006 CGACAAAGTATGCCGGCG 59.299 61.111 23.90 7.94 30.49 6.46
330 331 2.403586 GACAAAGTATGCCGGCGC 59.596 61.111 23.90 14.71 0.00 6.53
331 332 2.046314 ACAAAGTATGCCGGCGCT 60.046 55.556 23.90 16.92 35.36 5.92
332 333 2.309764 GACAAAGTATGCCGGCGCTG 62.310 60.000 23.90 9.96 35.36 5.18
333 334 2.824041 AAAGTATGCCGGCGCTGG 60.824 61.111 31.57 31.57 35.36 4.85
343 344 2.515523 GGCGCTGGCATGAGACAT 60.516 61.111 7.64 0.00 42.47 3.06
344 345 2.713770 GCGCTGGCATGAGACATG 59.286 61.111 0.00 7.29 39.62 3.21
345 346 2.831366 GCGCTGGCATGAGACATGG 61.831 63.158 0.00 0.00 39.62 3.66
346 347 2.831366 CGCTGGCATGAGACATGGC 61.831 63.158 24.33 24.33 43.83 4.40
347 348 2.487532 GCTGGCATGAGACATGGCC 61.488 63.158 26.65 19.89 46.58 5.36
349 350 3.589881 GGCATGAGACATGGCCGC 61.590 66.667 21.83 5.42 38.48 6.53
350 351 2.515523 GCATGAGACATGGCCGCT 60.516 61.111 12.56 0.00 0.00 5.52
351 352 2.831366 GCATGAGACATGGCCGCTG 61.831 63.158 12.56 0.00 0.00 5.18
352 353 2.184830 CATGAGACATGGCCGCTGG 61.185 63.158 9.69 0.00 0.00 4.85
373 374 4.832608 GATCGGCCGCGGGTCTTT 62.833 66.667 29.38 0.00 0.00 2.52
374 375 4.404098 ATCGGCCGCGGGTCTTTT 62.404 61.111 29.38 0.00 0.00 2.27
375 376 3.912745 ATCGGCCGCGGGTCTTTTT 62.913 57.895 29.38 0.00 0.00 1.94
400 401 9.781834 TTTATTTAGAAGTTAAATGCGGACATG 57.218 29.630 0.00 0.00 36.36 3.21
401 402 7.624360 ATTTAGAAGTTAAATGCGGACATGA 57.376 32.000 0.00 0.00 36.36 3.07
402 403 7.441890 TTTAGAAGTTAAATGCGGACATGAA 57.558 32.000 0.00 0.00 36.36 2.57
403 404 5.957842 AGAAGTTAAATGCGGACATGAAA 57.042 34.783 0.00 0.00 36.36 2.69
404 405 6.515272 AGAAGTTAAATGCGGACATGAAAT 57.485 33.333 0.00 0.00 36.36 2.17
414 415 2.408835 CATGAAATGGGTCGGCGC 59.591 61.111 0.00 0.00 41.79 6.53
415 416 3.202001 ATGAAATGGGTCGGCGCG 61.202 61.111 0.00 0.00 0.00 6.86
416 417 3.969250 ATGAAATGGGTCGGCGCGT 62.969 57.895 8.43 0.00 0.00 6.01
417 418 3.428282 GAAATGGGTCGGCGCGTT 61.428 61.111 8.43 5.61 38.23 4.84
418 419 3.661025 GAAATGGGTCGGCGCGTTG 62.661 63.158 12.62 0.00 36.96 4.10
438 439 3.055719 CGCACTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
439 440 2.568090 GCACTGCCGACCCAAATG 59.432 61.111 0.00 0.00 0.00 2.32
440 441 2.568090 CACTGCCGACCCAAATGC 59.432 61.111 0.00 0.00 0.00 3.56
441 442 2.115052 ACTGCCGACCCAAATGCA 59.885 55.556 0.00 0.00 0.00 3.96
442 443 1.530419 ACTGCCGACCCAAATGCAA 60.530 52.632 0.00 0.00 32.58 4.08
443 444 1.112315 ACTGCCGACCCAAATGCAAA 61.112 50.000 0.00 0.00 32.58 3.68
444 445 0.033228 CTGCCGACCCAAATGCAAAA 59.967 50.000 0.00 0.00 32.58 2.44
445 446 0.249657 TGCCGACCCAAATGCAAAAC 60.250 50.000 0.00 0.00 0.00 2.43
446 447 0.033366 GCCGACCCAAATGCAAAACT 59.967 50.000 0.00 0.00 0.00 2.66
447 448 1.782044 CCGACCCAAATGCAAAACTG 58.218 50.000 0.00 0.00 0.00 3.16
448 449 1.068434 CCGACCCAAATGCAAAACTGT 59.932 47.619 0.00 0.00 0.00 3.55
449 450 2.482839 CCGACCCAAATGCAAAACTGTT 60.483 45.455 0.00 0.00 0.00 3.16
450 451 2.794350 CGACCCAAATGCAAAACTGTTC 59.206 45.455 0.00 0.00 0.00 3.18
451 452 2.794350 GACCCAAATGCAAAACTGTTCG 59.206 45.455 0.00 0.00 0.00 3.95
452 453 2.134346 CCCAAATGCAAAACTGTTCGG 58.866 47.619 0.00 0.00 0.00 4.30
453 454 2.223923 CCCAAATGCAAAACTGTTCGGA 60.224 45.455 0.00 0.00 0.00 4.55
454 455 2.794350 CCAAATGCAAAACTGTTCGGAC 59.206 45.455 0.00 0.00 0.00 4.79
455 456 2.399396 AATGCAAAACTGTTCGGACG 57.601 45.000 0.00 0.00 0.00 4.79
456 457 0.040425 ATGCAAAACTGTTCGGACGC 60.040 50.000 0.00 0.00 0.00 5.19
457 458 1.370051 GCAAAACTGTTCGGACGCC 60.370 57.895 0.00 0.00 0.00 5.68
487 488 3.765349 CGACCCAAACGGACAAATG 57.235 52.632 0.00 0.00 34.64 2.32
488 489 0.386731 CGACCCAAACGGACAAATGC 60.387 55.000 0.00 0.00 34.64 3.56
489 490 0.386731 GACCCAAACGGACAAATGCG 60.387 55.000 0.00 0.00 46.59 4.73
490 491 1.732683 CCCAAACGGACAAATGCGC 60.733 57.895 0.00 0.00 44.76 6.09
491 492 1.732683 CCAAACGGACAAATGCGCC 60.733 57.895 4.18 0.00 44.76 6.53
495 496 4.160635 CGGACAAATGCGCCGTCC 62.161 66.667 19.71 19.71 44.79 4.79
496 497 4.160635 GGACAAATGCGCCGTCCG 62.161 66.667 16.42 0.29 39.86 4.79
497 498 3.419759 GACAAATGCGCCGTCCGT 61.420 61.111 4.18 0.00 39.71 4.69
498 499 2.961669 GACAAATGCGCCGTCCGTT 61.962 57.895 4.18 0.00 39.71 4.44
499 500 2.254051 CAAATGCGCCGTCCGTTT 59.746 55.556 4.18 0.00 39.71 3.60
500 501 2.080062 CAAATGCGCCGTCCGTTTG 61.080 57.895 4.18 3.18 39.71 2.93
501 502 3.262142 AAATGCGCCGTCCGTTTGG 62.262 57.895 4.18 0.00 39.71 3.28
518 519 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
519 520 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
612 622 2.583685 GATTTCAAGCTGCCGTCCGC 62.584 60.000 0.00 0.00 38.31 5.54
637 647 2.645567 CTGACACGGACTGCTCGT 59.354 61.111 0.00 0.00 41.93 4.18
639 649 1.004277 CTGACACGGACTGCTCGTTC 61.004 60.000 0.00 0.00 38.94 3.95
650 660 2.032528 CTCGTTCAGCCCAGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
653 663 1.973281 CGTTCAGCCCAGCCAATGT 60.973 57.895 0.00 0.00 0.00 2.71
669 679 3.407252 CAATGTCGAACTAACACGCATG 58.593 45.455 0.00 0.00 0.00 4.06
670 680 2.143008 TGTCGAACTAACACGCATGT 57.857 45.000 0.00 0.00 42.46 3.21
671 681 3.285816 TGTCGAACTAACACGCATGTA 57.714 42.857 0.00 0.00 38.45 2.29
672 682 3.239254 TGTCGAACTAACACGCATGTAG 58.761 45.455 0.00 0.00 38.45 2.74
673 683 2.597305 GTCGAACTAACACGCATGTAGG 59.403 50.000 0.00 0.00 38.45 3.18
674 684 2.488937 TCGAACTAACACGCATGTAGGA 59.511 45.455 0.00 0.00 38.45 2.94
675 685 2.852413 CGAACTAACACGCATGTAGGAG 59.148 50.000 0.00 0.00 38.45 3.69
680 690 5.974108 ACTAACACGCATGTAGGAGTATTT 58.026 37.500 0.00 0.00 38.45 1.40
682 692 4.737855 ACACGCATGTAGGAGTATTTCT 57.262 40.909 0.00 0.00 37.26 2.52
693 703 4.148838 AGGAGTATTTCTCAGATCCTCCG 58.851 47.826 0.00 0.00 44.40 4.63
750 760 3.045634 TGGAGGGTTTGAAGAGAGACAA 58.954 45.455 0.00 0.00 0.00 3.18
751 761 3.458118 TGGAGGGTTTGAAGAGAGACAAA 59.542 43.478 0.00 0.00 34.33 2.83
761 771 5.111989 TGAAGAGAGACAAAAGCATATCCG 58.888 41.667 0.00 0.00 0.00 4.18
1294 1381 4.853142 CCATCGACCCCTCCCCGA 62.853 72.222 0.00 0.00 36.72 5.14
1329 1416 1.445582 CAACTACGGCGTCTGGGTC 60.446 63.158 19.21 0.00 0.00 4.46
1920 2007 1.452833 GCTGAGGCACCTGGGAATC 60.453 63.158 0.00 0.00 38.54 2.52
2253 2340 1.214589 CCTCCAAGGTACACGACGG 59.785 63.158 0.00 0.00 0.00 4.79
2340 2427 2.434428 CTGCCTGAGCTCTTGATGTTT 58.566 47.619 16.19 0.00 40.80 2.83
2643 2746 3.557595 GCTGCTGCTACGTTATTGAGATT 59.442 43.478 8.53 0.00 36.03 2.40
2754 2862 7.226720 ACTTACAAAAGGTCGCATAATCATAGG 59.773 37.037 0.00 0.00 37.01 2.57
2783 2892 9.595823 TTTTAGCCTATACAGTAAGAACATGAC 57.404 33.333 0.00 0.00 0.00 3.06
3088 3205 4.597507 TCTTGTATTTGACCCTCAGACCTT 59.402 41.667 0.00 0.00 0.00 3.50
3438 3555 6.414408 AATCGAAGCAACTCAAACATAGAG 57.586 37.500 0.00 0.00 39.04 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.772973 ACACAACTCTACAACATAAATAAGTCA 57.227 29.630 0.00 0.00 0.00 3.41
11 12 8.779303 CCACAACACAACTCTACAACATAAATA 58.221 33.333 0.00 0.00 0.00 1.40
12 13 7.284489 ACCACAACACAACTCTACAACATAAAT 59.716 33.333 0.00 0.00 0.00 1.40
13 14 6.600032 ACCACAACACAACTCTACAACATAAA 59.400 34.615 0.00 0.00 0.00 1.40
14 15 6.116806 ACCACAACACAACTCTACAACATAA 58.883 36.000 0.00 0.00 0.00 1.90
15 16 5.676552 ACCACAACACAACTCTACAACATA 58.323 37.500 0.00 0.00 0.00 2.29
16 17 4.523083 ACCACAACACAACTCTACAACAT 58.477 39.130 0.00 0.00 0.00 2.71
17 18 3.945346 ACCACAACACAACTCTACAACA 58.055 40.909 0.00 0.00 0.00 3.33
18 19 5.989777 AGATACCACAACACAACTCTACAAC 59.010 40.000 0.00 0.00 0.00 3.32
19 20 6.169557 AGATACCACAACACAACTCTACAA 57.830 37.500 0.00 0.00 0.00 2.41
20 21 5.801531 AGATACCACAACACAACTCTACA 57.198 39.130 0.00 0.00 0.00 2.74
21 22 5.638234 GGAAGATACCACAACACAACTCTAC 59.362 44.000 0.00 0.00 0.00 2.59
22 23 5.279809 GGGAAGATACCACAACACAACTCTA 60.280 44.000 0.00 0.00 0.00 2.43
23 24 4.505039 GGGAAGATACCACAACACAACTCT 60.505 45.833 0.00 0.00 0.00 3.24
24 25 3.751698 GGGAAGATACCACAACACAACTC 59.248 47.826 0.00 0.00 0.00 3.01
25 26 3.751518 GGGAAGATACCACAACACAACT 58.248 45.455 0.00 0.00 0.00 3.16
26 27 2.482721 CGGGAAGATACCACAACACAAC 59.517 50.000 0.00 0.00 0.00 3.32
27 28 2.105134 ACGGGAAGATACCACAACACAA 59.895 45.455 0.00 0.00 0.00 3.33
28 29 1.695242 ACGGGAAGATACCACAACACA 59.305 47.619 0.00 0.00 0.00 3.72
29 30 2.073816 CACGGGAAGATACCACAACAC 58.926 52.381 0.00 0.00 0.00 3.32
30 31 1.972075 TCACGGGAAGATACCACAACA 59.028 47.619 0.00 0.00 0.00 3.33
31 32 2.028385 ACTCACGGGAAGATACCACAAC 60.028 50.000 0.00 0.00 0.00 3.32
32 33 2.232941 GACTCACGGGAAGATACCACAA 59.767 50.000 0.00 0.00 0.00 3.33
33 34 1.822990 GACTCACGGGAAGATACCACA 59.177 52.381 0.00 0.00 0.00 4.17
34 35 1.136500 GGACTCACGGGAAGATACCAC 59.864 57.143 0.00 0.00 0.00 4.16
35 36 1.481871 GGACTCACGGGAAGATACCA 58.518 55.000 0.00 0.00 0.00 3.25
36 37 0.751452 GGGACTCACGGGAAGATACC 59.249 60.000 0.00 0.00 0.00 2.73
37 38 1.409427 CAGGGACTCACGGGAAGATAC 59.591 57.143 0.00 0.00 34.60 2.24
38 39 1.286849 TCAGGGACTCACGGGAAGATA 59.713 52.381 0.00 0.00 34.60 1.98
39 40 0.041238 TCAGGGACTCACGGGAAGAT 59.959 55.000 0.00 0.00 34.60 2.40
40 41 0.898789 GTCAGGGACTCACGGGAAGA 60.899 60.000 0.00 0.00 34.60 2.87
41 42 1.592223 GTCAGGGACTCACGGGAAG 59.408 63.158 0.00 0.00 34.60 3.46
42 43 1.911766 GGTCAGGGACTCACGGGAA 60.912 63.158 0.00 0.00 34.60 3.97
43 44 2.283676 GGTCAGGGACTCACGGGA 60.284 66.667 0.00 0.00 34.60 5.14
44 45 1.913762 AAGGTCAGGGACTCACGGG 60.914 63.158 0.00 0.00 34.60 5.28
45 46 1.185618 TCAAGGTCAGGGACTCACGG 61.186 60.000 0.00 0.00 34.60 4.94
46 47 0.898320 ATCAAGGTCAGGGACTCACG 59.102 55.000 0.00 0.00 34.60 4.35
47 48 1.134965 CGATCAAGGTCAGGGACTCAC 60.135 57.143 0.00 0.00 34.60 3.51
48 49 1.186200 CGATCAAGGTCAGGGACTCA 58.814 55.000 0.00 0.00 34.60 3.41
49 50 1.187087 ACGATCAAGGTCAGGGACTC 58.813 55.000 0.00 0.00 34.60 3.36
50 51 2.100989 GTACGATCAAGGTCAGGGACT 58.899 52.381 0.00 0.00 43.88 3.85
51 52 1.822990 TGTACGATCAAGGTCAGGGAC 59.177 52.381 0.00 0.00 0.00 4.46
52 53 1.822990 GTGTACGATCAAGGTCAGGGA 59.177 52.381 0.00 0.00 0.00 4.20
53 54 1.548719 TGTGTACGATCAAGGTCAGGG 59.451 52.381 0.00 0.00 0.00 4.45
54 55 3.526931 ATGTGTACGATCAAGGTCAGG 57.473 47.619 0.00 0.00 0.00 3.86
55 56 4.436050 GCAAATGTGTACGATCAAGGTCAG 60.436 45.833 0.00 0.00 0.00 3.51
56 57 3.435327 GCAAATGTGTACGATCAAGGTCA 59.565 43.478 0.00 0.00 0.00 4.02
57 58 3.483574 CGCAAATGTGTACGATCAAGGTC 60.484 47.826 0.00 0.00 0.00 3.85
58 59 2.415168 CGCAAATGTGTACGATCAAGGT 59.585 45.455 0.00 0.00 0.00 3.50
59 60 2.415168 ACGCAAATGTGTACGATCAAGG 59.585 45.455 0.00 0.00 36.94 3.61
60 61 3.407252 CACGCAAATGTGTACGATCAAG 58.593 45.455 0.00 0.00 36.94 3.02
61 62 2.412195 GCACGCAAATGTGTACGATCAA 60.412 45.455 0.00 0.00 41.94 2.57
62 63 1.127766 GCACGCAAATGTGTACGATCA 59.872 47.619 0.00 0.00 41.94 2.92
63 64 1.127766 TGCACGCAAATGTGTACGATC 59.872 47.619 0.00 0.00 41.94 3.69
64 65 1.152510 TGCACGCAAATGTGTACGAT 58.847 45.000 0.00 0.00 41.94 3.73
65 66 1.136113 CATGCACGCAAATGTGTACGA 60.136 47.619 0.00 0.00 41.94 3.43
66 67 1.136113 TCATGCACGCAAATGTGTACG 60.136 47.619 0.00 0.00 41.94 3.67
67 68 2.610219 TCATGCACGCAAATGTGTAC 57.390 45.000 0.00 0.00 41.94 2.90
68 69 3.846423 AATCATGCACGCAAATGTGTA 57.154 38.095 0.00 0.00 41.94 2.90
69 70 2.728690 AATCATGCACGCAAATGTGT 57.271 40.000 0.00 0.00 41.94 3.72
70 71 3.544682 CACTAATCATGCACGCAAATGTG 59.455 43.478 0.00 0.00 42.81 3.21
71 72 3.191162 ACACTAATCATGCACGCAAATGT 59.809 39.130 0.00 0.00 0.00 2.71
72 73 3.761657 ACACTAATCATGCACGCAAATG 58.238 40.909 0.00 0.00 0.00 2.32
73 74 4.494035 CGTACACTAATCATGCACGCAAAT 60.494 41.667 0.00 0.00 30.70 2.32
74 75 3.181525 CGTACACTAATCATGCACGCAAA 60.182 43.478 0.00 0.00 30.70 3.68
75 76 2.347150 CGTACACTAATCATGCACGCAA 59.653 45.455 0.00 0.00 30.70 4.85
76 77 1.923864 CGTACACTAATCATGCACGCA 59.076 47.619 0.00 0.00 30.70 5.24
77 78 1.257936 CCGTACACTAATCATGCACGC 59.742 52.381 0.00 0.00 35.86 5.34
78 79 2.534349 GACCGTACACTAATCATGCACG 59.466 50.000 0.00 0.00 36.74 5.34
79 80 3.517602 TGACCGTACACTAATCATGCAC 58.482 45.455 0.00 0.00 0.00 4.57
80 81 3.878160 TGACCGTACACTAATCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
81 82 5.556382 CGATTTGACCGTACACTAATCATGC 60.556 44.000 13.93 0.00 32.03 4.06
82 83 5.051039 CCGATTTGACCGTACACTAATCATG 60.051 44.000 13.93 0.00 32.03 3.07
83 84 5.047847 CCGATTTGACCGTACACTAATCAT 58.952 41.667 13.93 0.00 32.03 2.45
84 85 4.426416 CCGATTTGACCGTACACTAATCA 58.574 43.478 13.93 0.90 32.03 2.57
85 86 3.800506 CCCGATTTGACCGTACACTAATC 59.199 47.826 0.00 2.04 0.00 1.75
86 87 3.431207 CCCCGATTTGACCGTACACTAAT 60.431 47.826 0.00 0.00 0.00 1.73
87 88 2.094078 CCCCGATTTGACCGTACACTAA 60.094 50.000 0.00 0.00 0.00 2.24
88 89 1.477700 CCCCGATTTGACCGTACACTA 59.522 52.381 0.00 0.00 0.00 2.74
89 90 0.248289 CCCCGATTTGACCGTACACT 59.752 55.000 0.00 0.00 0.00 3.55
90 91 0.741927 CCCCCGATTTGACCGTACAC 60.742 60.000 0.00 0.00 0.00 2.90
91 92 1.597989 CCCCCGATTTGACCGTACA 59.402 57.895 0.00 0.00 0.00 2.90
92 93 1.816679 GCCCCCGATTTGACCGTAC 60.817 63.158 0.00 0.00 0.00 3.67
93 94 2.585698 GCCCCCGATTTGACCGTA 59.414 61.111 0.00 0.00 0.00 4.02
94 95 4.770874 CGCCCCCGATTTGACCGT 62.771 66.667 0.00 0.00 36.29 4.83
95 96 4.770874 ACGCCCCCGATTTGACCG 62.771 66.667 0.00 0.00 38.29 4.79
96 97 2.822701 GACGCCCCCGATTTGACC 60.823 66.667 0.00 0.00 38.29 4.02
97 98 2.046700 TGACGCCCCCGATTTGAC 60.047 61.111 0.00 0.00 38.29 3.18
98 99 2.046700 GTGACGCCCCCGATTTGA 60.047 61.111 0.00 0.00 38.29 2.69
99 100 2.359354 TGTGACGCCCCCGATTTG 60.359 61.111 0.00 0.00 38.29 2.32
100 101 2.359478 GTGTGACGCCCCCGATTT 60.359 61.111 0.00 0.00 38.29 2.17
101 102 4.404098 GGTGTGACGCCCCCGATT 62.404 66.667 3.20 0.00 38.29 3.34
112 113 0.392706 ACTTGAGCATGTCGGTGTGA 59.607 50.000 0.00 0.00 0.00 3.58
113 114 1.195448 GAACTTGAGCATGTCGGTGTG 59.805 52.381 0.00 0.00 0.00 3.82
114 115 1.512926 GAACTTGAGCATGTCGGTGT 58.487 50.000 0.00 0.00 0.00 4.16
115 116 0.439985 CGAACTTGAGCATGTCGGTG 59.560 55.000 0.00 0.00 0.00 4.94
116 117 0.317160 TCGAACTTGAGCATGTCGGT 59.683 50.000 0.00 0.00 0.00 4.69
117 118 0.716108 GTCGAACTTGAGCATGTCGG 59.284 55.000 0.00 0.00 0.00 4.79
118 119 0.363512 CGTCGAACTTGAGCATGTCG 59.636 55.000 0.00 0.00 0.00 4.35
119 120 1.387084 GTCGTCGAACTTGAGCATGTC 59.613 52.381 0.00 0.00 0.00 3.06
120 121 1.419374 GTCGTCGAACTTGAGCATGT 58.581 50.000 0.00 0.00 0.00 3.21
121 122 0.363512 CGTCGTCGAACTTGAGCATG 59.636 55.000 0.00 0.00 39.71 4.06
122 123 0.240145 TCGTCGTCGAACTTGAGCAT 59.760 50.000 1.37 0.00 43.34 3.79
123 124 0.385598 CTCGTCGTCGAACTTGAGCA 60.386 55.000 6.19 0.00 45.61 4.26
124 125 0.385723 ACTCGTCGTCGAACTTGAGC 60.386 55.000 6.19 0.00 45.61 4.26
125 126 1.070108 TCACTCGTCGTCGAACTTGAG 60.070 52.381 6.19 5.10 45.61 3.02
126 127 0.939419 TCACTCGTCGTCGAACTTGA 59.061 50.000 6.19 6.43 45.61 3.02
127 128 1.905687 GATCACTCGTCGTCGAACTTG 59.094 52.381 6.19 4.25 45.61 3.16
128 129 1.805345 AGATCACTCGTCGTCGAACTT 59.195 47.619 6.19 0.00 45.61 2.66
129 130 1.440708 AGATCACTCGTCGTCGAACT 58.559 50.000 6.19 0.00 45.61 3.01
130 131 3.281601 CATAGATCACTCGTCGTCGAAC 58.718 50.000 6.19 0.00 45.61 3.95
131 132 2.287103 CCATAGATCACTCGTCGTCGAA 59.713 50.000 6.19 0.00 45.61 3.71
132 133 1.865340 CCATAGATCACTCGTCGTCGA 59.135 52.381 4.42 4.42 44.12 4.20
133 134 1.660614 GCCATAGATCACTCGTCGTCG 60.661 57.143 0.00 0.00 38.55 5.12
134 135 1.660614 CGCCATAGATCACTCGTCGTC 60.661 57.143 0.00 0.00 0.00 4.20
135 136 0.308068 CGCCATAGATCACTCGTCGT 59.692 55.000 0.00 0.00 0.00 4.34
136 137 0.386100 CCGCCATAGATCACTCGTCG 60.386 60.000 0.00 0.00 0.00 5.12
137 138 0.664767 GCCGCCATAGATCACTCGTC 60.665 60.000 0.00 0.00 0.00 4.20
138 139 1.364171 GCCGCCATAGATCACTCGT 59.636 57.895 0.00 0.00 0.00 4.18
139 140 1.730902 CGCCGCCATAGATCACTCG 60.731 63.158 0.00 0.00 0.00 4.18
140 141 0.387878 CTCGCCGCCATAGATCACTC 60.388 60.000 0.00 0.00 0.00 3.51
141 142 1.662608 CTCGCCGCCATAGATCACT 59.337 57.895 0.00 0.00 0.00 3.41
142 143 1.373497 CCTCGCCGCCATAGATCAC 60.373 63.158 0.00 0.00 0.00 3.06
143 144 2.574018 CCCTCGCCGCCATAGATCA 61.574 63.158 0.00 0.00 0.00 2.92
144 145 2.262915 CCCTCGCCGCCATAGATC 59.737 66.667 0.00 0.00 0.00 2.75
145 146 4.008933 GCCCTCGCCGCCATAGAT 62.009 66.667 0.00 0.00 0.00 1.98
147 148 3.757248 AAAGCCCTCGCCGCCATAG 62.757 63.158 0.00 0.00 34.57 2.23
148 149 2.830186 AAAAAGCCCTCGCCGCCATA 62.830 55.000 0.00 0.00 34.57 2.74
149 150 4.740822 AAAAGCCCTCGCCGCCAT 62.741 61.111 0.00 0.00 34.57 4.40
150 151 4.966787 AAAAAGCCCTCGCCGCCA 62.967 61.111 0.00 0.00 34.57 5.69
167 168 0.600557 CACCTGCCGGCATACAAAAA 59.399 50.000 32.87 3.62 0.00 1.94
168 169 0.538516 ACACCTGCCGGCATACAAAA 60.539 50.000 32.87 4.54 0.00 2.44
169 170 1.074072 ACACCTGCCGGCATACAAA 59.926 52.632 32.87 5.45 0.00 2.83
170 171 1.673993 CACACCTGCCGGCATACAA 60.674 57.895 32.87 6.37 0.00 2.41
171 172 2.046411 CACACCTGCCGGCATACA 60.046 61.111 32.87 6.85 0.00 2.29
172 173 3.508840 GCACACCTGCCGGCATAC 61.509 66.667 32.87 12.06 37.45 2.39
181 182 3.434319 GTCATGCCGGCACACCTG 61.434 66.667 35.50 26.35 0.00 4.00
182 183 4.722700 GGTCATGCCGGCACACCT 62.723 66.667 36.54 21.00 32.36 4.00
184 185 3.737172 GTGGTCATGCCGGCACAC 61.737 66.667 35.50 29.83 41.21 3.82
189 190 4.838152 CTCCCGTGGTCATGCCGG 62.838 72.222 0.00 0.00 41.21 6.13
207 208 4.889856 TCGACCATGCCATCGCGG 62.890 66.667 6.13 0.00 38.24 6.46
208 209 2.889988 TTCGACCATGCCATCGCG 60.890 61.111 0.00 0.00 38.24 5.87
209 210 1.766143 GAGTTCGACCATGCCATCGC 61.766 60.000 7.22 0.00 38.24 4.58
210 211 0.460109 TGAGTTCGACCATGCCATCG 60.460 55.000 6.04 6.04 39.72 3.84
211 212 1.667724 CTTGAGTTCGACCATGCCATC 59.332 52.381 0.00 0.00 0.00 3.51
212 213 1.003580 ACTTGAGTTCGACCATGCCAT 59.996 47.619 0.00 0.00 0.00 4.40
213 214 0.396435 ACTTGAGTTCGACCATGCCA 59.604 50.000 0.00 0.00 0.00 4.92
214 215 1.079503 GACTTGAGTTCGACCATGCC 58.920 55.000 0.00 0.00 0.00 4.40
215 216 1.079503 GGACTTGAGTTCGACCATGC 58.920 55.000 0.00 0.00 0.00 4.06
216 217 1.001974 TGGGACTTGAGTTCGACCATG 59.998 52.381 0.00 0.00 0.00 3.66
217 218 1.002087 GTGGGACTTGAGTTCGACCAT 59.998 52.381 0.00 0.00 0.00 3.55
218 219 0.391597 GTGGGACTTGAGTTCGACCA 59.608 55.000 0.00 0.00 0.00 4.02
219 220 0.320508 GGTGGGACTTGAGTTCGACC 60.321 60.000 7.72 7.72 43.60 4.79
220 221 0.320508 GGGTGGGACTTGAGTTCGAC 60.321 60.000 0.00 0.00 32.27 4.20
221 222 0.471211 AGGGTGGGACTTGAGTTCGA 60.471 55.000 0.00 0.00 0.00 3.71
222 223 0.396811 AAGGGTGGGACTTGAGTTCG 59.603 55.000 0.00 0.00 0.00 3.95
223 224 2.658807 AAAGGGTGGGACTTGAGTTC 57.341 50.000 0.00 0.00 0.00 3.01
224 225 3.398318 AAAAAGGGTGGGACTTGAGTT 57.602 42.857 0.00 0.00 0.00 3.01
241 242 1.206610 ACACATGCCAGCACACAAAAA 59.793 42.857 0.00 0.00 0.00 1.94
242 243 0.822811 ACACATGCCAGCACACAAAA 59.177 45.000 0.00 0.00 0.00 2.44
243 244 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
244 245 1.734748 CACACATGCCAGCACACAA 59.265 52.632 0.00 0.00 0.00 3.33
245 246 2.847754 GCACACATGCCAGCACACA 61.848 57.895 0.00 0.00 46.97 3.72
246 247 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
280 281 1.230635 ACCACAGTTCATGCTGACGC 61.231 55.000 7.27 0.00 39.62 5.19
281 282 2.078849 TACCACAGTTCATGCTGACG 57.921 50.000 7.27 0.26 39.62 4.35
282 283 5.182001 AGAAAATACCACAGTTCATGCTGAC 59.818 40.000 7.27 0.00 39.62 3.51
283 284 5.181811 CAGAAAATACCACAGTTCATGCTGA 59.818 40.000 7.27 0.00 39.62 4.26
284 285 5.181811 TCAGAAAATACCACAGTTCATGCTG 59.818 40.000 0.00 0.00 41.92 4.41
285 286 5.316167 TCAGAAAATACCACAGTTCATGCT 58.684 37.500 0.00 0.00 0.00 3.79
286 287 5.627499 TCAGAAAATACCACAGTTCATGC 57.373 39.130 0.00 0.00 0.00 4.06
287 288 6.088824 GCTTCAGAAAATACCACAGTTCATG 58.911 40.000 0.00 0.00 0.00 3.07
288 289 5.183904 GGCTTCAGAAAATACCACAGTTCAT 59.816 40.000 0.00 0.00 0.00 2.57
289 290 4.518970 GGCTTCAGAAAATACCACAGTTCA 59.481 41.667 0.00 0.00 0.00 3.18
290 291 4.378459 CGGCTTCAGAAAATACCACAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
291 292 3.502211 CGGCTTCAGAAAATACCACAGTT 59.498 43.478 0.00 0.00 0.00 3.16
292 293 3.074412 CGGCTTCAGAAAATACCACAGT 58.926 45.455 0.00 0.00 0.00 3.55
293 294 3.125316 GTCGGCTTCAGAAAATACCACAG 59.875 47.826 0.00 0.00 0.00 3.66
294 295 3.071479 GTCGGCTTCAGAAAATACCACA 58.929 45.455 0.00 0.00 0.00 4.17
295 296 3.071479 TGTCGGCTTCAGAAAATACCAC 58.929 45.455 0.00 0.00 0.00 4.16
296 297 3.410631 TGTCGGCTTCAGAAAATACCA 57.589 42.857 0.00 0.00 0.00 3.25
297 298 4.215613 ACTTTGTCGGCTTCAGAAAATACC 59.784 41.667 0.00 0.00 0.00 2.73
298 299 5.358298 ACTTTGTCGGCTTCAGAAAATAC 57.642 39.130 0.00 0.00 0.00 1.89
299 300 6.403200 GCATACTTTGTCGGCTTCAGAAAATA 60.403 38.462 0.00 0.00 0.00 1.40
300 301 5.619981 GCATACTTTGTCGGCTTCAGAAAAT 60.620 40.000 0.00 0.00 0.00 1.82
301 302 4.320202 GCATACTTTGTCGGCTTCAGAAAA 60.320 41.667 0.00 0.00 0.00 2.29
302 303 3.188460 GCATACTTTGTCGGCTTCAGAAA 59.812 43.478 0.00 0.00 0.00 2.52
303 304 2.742053 GCATACTTTGTCGGCTTCAGAA 59.258 45.455 0.00 0.00 0.00 3.02
304 305 2.346803 GCATACTTTGTCGGCTTCAGA 58.653 47.619 0.00 0.00 0.00 3.27
305 306 1.398390 GGCATACTTTGTCGGCTTCAG 59.602 52.381 0.00 0.00 0.00 3.02
306 307 1.448985 GGCATACTTTGTCGGCTTCA 58.551 50.000 0.00 0.00 0.00 3.02
313 314 2.106683 AGCGCCGGCATACTTTGTC 61.107 57.895 28.98 4.53 43.41 3.18
314 315 2.046314 AGCGCCGGCATACTTTGT 60.046 55.556 28.98 0.00 43.41 2.83
315 316 2.404789 CAGCGCCGGCATACTTTG 59.595 61.111 28.98 9.29 43.41 2.77
316 317 2.824041 CCAGCGCCGGCATACTTT 60.824 61.111 28.98 0.92 43.41 2.66
326 327 2.515523 ATGTCTCATGCCAGCGCC 60.516 61.111 2.29 0.00 0.00 6.53
327 328 2.713770 CATGTCTCATGCCAGCGC 59.286 61.111 0.00 0.00 0.00 5.92
328 329 2.831366 GCCATGTCTCATGCCAGCG 61.831 63.158 4.43 0.00 0.00 5.18
329 330 2.487532 GGCCATGTCTCATGCCAGC 61.488 63.158 0.00 8.60 43.46 4.85
330 331 2.184830 CGGCCATGTCTCATGCCAG 61.185 63.158 2.24 9.82 44.22 4.85
331 332 2.124612 CGGCCATGTCTCATGCCA 60.125 61.111 2.24 0.00 44.22 4.92
332 333 3.589881 GCGGCCATGTCTCATGCC 61.590 66.667 2.24 8.14 40.54 4.40
333 334 2.515523 AGCGGCCATGTCTCATGC 60.516 61.111 2.24 0.00 0.00 4.06
334 335 2.184830 CCAGCGGCCATGTCTCATG 61.185 63.158 2.24 3.11 0.00 3.07
335 336 2.191375 CCAGCGGCCATGTCTCAT 59.809 61.111 2.24 0.00 0.00 2.90
336 337 4.783621 GCCAGCGGCCATGTCTCA 62.784 66.667 2.24 0.00 44.06 3.27
356 357 4.832608 AAAGACCCGCGGCCGATC 62.833 66.667 33.48 19.64 36.29 3.69
357 358 3.912745 AAAAAGACCCGCGGCCGAT 62.913 57.895 33.48 10.85 36.29 4.18
358 359 4.629523 AAAAAGACCCGCGGCCGA 62.630 61.111 33.48 0.00 36.29 5.54
374 375 9.781834 CATGTCCGCATTTAACTTCTAAATAAA 57.218 29.630 0.00 0.00 31.99 1.40
375 376 9.168451 TCATGTCCGCATTTAACTTCTAAATAA 57.832 29.630 0.00 0.00 31.99 1.40
376 377 8.725405 TCATGTCCGCATTTAACTTCTAAATA 57.275 30.769 0.00 0.00 31.99 1.40
377 378 7.624360 TCATGTCCGCATTTAACTTCTAAAT 57.376 32.000 0.00 0.00 31.99 1.40
378 379 7.441890 TTCATGTCCGCATTTAACTTCTAAA 57.558 32.000 0.00 0.00 31.99 1.85
379 380 7.441890 TTTCATGTCCGCATTTAACTTCTAA 57.558 32.000 0.00 0.00 31.99 2.10
380 381 7.415095 CCATTTCATGTCCGCATTTAACTTCTA 60.415 37.037 0.00 0.00 31.99 2.10
381 382 5.957842 TTTCATGTCCGCATTTAACTTCT 57.042 34.783 0.00 0.00 31.99 2.85
382 383 5.516339 CCATTTCATGTCCGCATTTAACTTC 59.484 40.000 0.00 0.00 31.99 3.01
383 384 5.410067 CCATTTCATGTCCGCATTTAACTT 58.590 37.500 0.00 0.00 31.99 2.66
384 385 4.142182 CCCATTTCATGTCCGCATTTAACT 60.142 41.667 0.00 0.00 31.99 2.24
385 386 4.111916 CCCATTTCATGTCCGCATTTAAC 58.888 43.478 0.00 0.00 31.99 2.01
386 387 3.766591 ACCCATTTCATGTCCGCATTTAA 59.233 39.130 0.00 0.00 31.99 1.52
387 388 3.360867 ACCCATTTCATGTCCGCATTTA 58.639 40.909 0.00 0.00 31.99 1.40
388 389 2.166254 GACCCATTTCATGTCCGCATTT 59.834 45.455 0.00 0.00 31.99 2.32
389 390 1.750778 GACCCATTTCATGTCCGCATT 59.249 47.619 0.00 0.00 31.99 3.56
390 391 1.392589 GACCCATTTCATGTCCGCAT 58.607 50.000 0.00 0.00 35.32 4.73
391 392 1.024046 CGACCCATTTCATGTCCGCA 61.024 55.000 0.00 0.00 0.00 5.69
392 393 1.714899 CCGACCCATTTCATGTCCGC 61.715 60.000 0.00 0.00 0.00 5.54
393 394 1.714899 GCCGACCCATTTCATGTCCG 61.715 60.000 0.00 0.00 0.00 4.79
394 395 1.714899 CGCCGACCCATTTCATGTCC 61.715 60.000 0.00 0.00 0.00 4.02
395 396 1.721487 CGCCGACCCATTTCATGTC 59.279 57.895 0.00 0.00 0.00 3.06
396 397 2.406616 GCGCCGACCCATTTCATGT 61.407 57.895 0.00 0.00 0.00 3.21
397 398 2.408835 GCGCCGACCCATTTCATG 59.591 61.111 0.00 0.00 0.00 3.07
398 399 3.202001 CGCGCCGACCCATTTCAT 61.202 61.111 0.00 0.00 0.00 2.57
399 400 4.690719 ACGCGCCGACCCATTTCA 62.691 61.111 5.73 0.00 0.00 2.69
400 401 3.428282 AACGCGCCGACCCATTTC 61.428 61.111 5.73 0.00 0.00 2.17
401 402 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
421 422 3.055719 ATTTGGGTCGGCAGTGCG 61.056 61.111 9.45 4.79 0.00 5.34
422 423 2.568090 CATTTGGGTCGGCAGTGC 59.432 61.111 6.55 6.55 0.00 4.40
423 424 1.804396 TTGCATTTGGGTCGGCAGTG 61.804 55.000 0.00 0.00 37.59 3.66
424 425 1.112315 TTTGCATTTGGGTCGGCAGT 61.112 50.000 0.00 0.00 37.59 4.40
425 426 0.033228 TTTTGCATTTGGGTCGGCAG 59.967 50.000 0.00 0.00 37.59 4.85
426 427 0.249657 GTTTTGCATTTGGGTCGGCA 60.250 50.000 0.00 0.00 0.00 5.69
427 428 0.033366 AGTTTTGCATTTGGGTCGGC 59.967 50.000 0.00 0.00 0.00 5.54
428 429 1.068434 ACAGTTTTGCATTTGGGTCGG 59.932 47.619 0.00 0.00 0.00 4.79
429 430 2.507339 ACAGTTTTGCATTTGGGTCG 57.493 45.000 0.00 0.00 0.00 4.79
430 431 2.794350 CGAACAGTTTTGCATTTGGGTC 59.206 45.455 0.00 0.00 0.00 4.46
431 432 2.482839 CCGAACAGTTTTGCATTTGGGT 60.483 45.455 0.00 0.00 0.00 4.51
432 433 2.134346 CCGAACAGTTTTGCATTTGGG 58.866 47.619 0.00 0.00 0.00 4.12
433 434 2.794350 GTCCGAACAGTTTTGCATTTGG 59.206 45.455 0.00 0.00 0.00 3.28
434 435 2.467305 CGTCCGAACAGTTTTGCATTTG 59.533 45.455 0.00 0.00 0.00 2.32
435 436 2.726633 CGTCCGAACAGTTTTGCATTT 58.273 42.857 0.00 0.00 0.00 2.32
436 437 1.599419 GCGTCCGAACAGTTTTGCATT 60.599 47.619 0.00 0.00 0.00 3.56
437 438 0.040425 GCGTCCGAACAGTTTTGCAT 60.040 50.000 0.00 0.00 0.00 3.96
438 439 1.353804 GCGTCCGAACAGTTTTGCA 59.646 52.632 0.00 0.00 0.00 4.08
439 440 1.370051 GGCGTCCGAACAGTTTTGC 60.370 57.895 0.00 0.00 0.00 3.68
440 441 4.914291 GGCGTCCGAACAGTTTTG 57.086 55.556 0.00 0.00 0.00 2.44
466 467 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
467 468 1.520600 ATTTGTCCGTTTGGGTCGGC 61.521 55.000 0.00 0.00 46.49 5.54
469 470 0.386731 GCATTTGTCCGTTTGGGTCG 60.387 55.000 0.00 0.00 37.00 4.79
470 471 0.386731 CGCATTTGTCCGTTTGGGTC 60.387 55.000 0.00 0.00 37.00 4.46
471 472 1.657556 CGCATTTGTCCGTTTGGGT 59.342 52.632 0.00 0.00 37.00 4.51
472 473 1.732683 GCGCATTTGTCCGTTTGGG 60.733 57.895 0.30 0.00 35.24 4.12
473 474 1.732683 GGCGCATTTGTCCGTTTGG 60.733 57.895 10.83 0.00 0.00 3.28
474 475 2.080062 CGGCGCATTTGTCCGTTTG 61.080 57.895 10.83 0.00 38.47 2.93
475 476 2.254051 CGGCGCATTTGTCCGTTT 59.746 55.556 10.83 0.00 38.47 3.60
479 480 4.160635 CGGACGGCGCATTTGTCC 62.161 66.667 22.73 22.73 46.91 4.02
480 481 2.452366 AAACGGACGGCGCATTTGTC 62.452 55.000 10.83 11.19 0.00 3.18
481 482 2.548295 AAACGGACGGCGCATTTGT 61.548 52.632 10.83 0.74 0.00 2.83
482 483 2.080062 CAAACGGACGGCGCATTTG 61.080 57.895 10.83 9.01 0.00 2.32
483 484 2.254051 CAAACGGACGGCGCATTT 59.746 55.556 10.83 0.00 0.00 2.32
484 485 3.732892 CCAAACGGACGGCGCATT 61.733 61.111 10.83 0.00 0.00 3.56
501 502 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
502 503 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
505 506 2.180159 TAGAGCAACTCCAACGGGCC 62.180 60.000 0.00 0.00 0.00 5.80
506 507 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
507 508 2.178912 TTTAGAGCAACTCCAACGGG 57.821 50.000 0.00 0.00 0.00 5.28
508 509 3.074412 ACATTTAGAGCAACTCCAACGG 58.926 45.455 0.00 0.00 0.00 4.44
509 510 3.120199 CCACATTTAGAGCAACTCCAACG 60.120 47.826 0.00 0.00 0.00 4.10
510 511 3.821033 ACCACATTTAGAGCAACTCCAAC 59.179 43.478 0.00 0.00 0.00 3.77
511 512 3.820467 CACCACATTTAGAGCAACTCCAA 59.180 43.478 0.00 0.00 0.00 3.53
512 513 3.181445 ACACCACATTTAGAGCAACTCCA 60.181 43.478 0.00 0.00 0.00 3.86
513 514 3.412386 ACACCACATTTAGAGCAACTCC 58.588 45.455 0.00 0.00 0.00 3.85
514 515 6.743575 AATACACCACATTTAGAGCAACTC 57.256 37.500 0.00 0.00 0.00 3.01
515 516 7.014230 ACAAAATACACCACATTTAGAGCAACT 59.986 33.333 0.00 0.00 0.00 3.16
516 517 7.114811 CACAAAATACACCACATTTAGAGCAAC 59.885 37.037 0.00 0.00 0.00 4.17
517 518 7.013750 TCACAAAATACACCACATTTAGAGCAA 59.986 33.333 0.00 0.00 0.00 3.91
518 519 6.488344 TCACAAAATACACCACATTTAGAGCA 59.512 34.615 0.00 0.00 0.00 4.26
519 520 6.908825 TCACAAAATACACCACATTTAGAGC 58.091 36.000 0.00 0.00 0.00 4.09
520 521 8.567948 ACTTCACAAAATACACCACATTTAGAG 58.432 33.333 0.00 0.00 0.00 2.43
521 522 8.458573 ACTTCACAAAATACACCACATTTAGA 57.541 30.769 0.00 0.00 0.00 2.10
577 587 2.154854 AATCGACATGATAGGCCGTG 57.845 50.000 0.00 0.00 35.84 4.94
612 622 3.351450 TCCGTGTCAGGACGAGTG 58.649 61.111 0.00 0.00 42.10 3.51
633 643 1.377725 ATTGGCTGGGCTGAACGAG 60.378 57.895 0.00 0.00 0.00 4.18
637 647 1.675310 CGACATTGGCTGGGCTGAA 60.675 57.895 0.00 0.00 0.00 3.02
639 649 1.675310 TTCGACATTGGCTGGGCTG 60.675 57.895 0.00 0.00 0.00 4.85
650 660 2.683968 ACATGCGTGTTAGTTCGACAT 58.316 42.857 5.51 0.00 34.01 3.06
653 663 2.488937 TCCTACATGCGTGTTAGTTCGA 59.511 45.455 18.34 1.48 39.77 3.71
669 679 6.584185 GGAGGATCTGAGAAATACTCCTAC 57.416 45.833 7.02 1.73 46.77 3.18
750 760 6.321717 CACAAAATACACACGGATATGCTTT 58.678 36.000 0.00 0.00 0.00 3.51
751 761 5.676079 GCACAAAATACACACGGATATGCTT 60.676 40.000 0.00 0.00 0.00 3.91
761 771 1.665735 CCGCCAGCACAAAATACACAC 60.666 52.381 0.00 0.00 0.00 3.82
900 920 3.966543 GGAGTGGTGTGGTGGGGG 61.967 72.222 0.00 0.00 0.00 5.40
901 921 4.329545 CGGAGTGGTGTGGTGGGG 62.330 72.222 0.00 0.00 0.00 4.96
2253 2340 3.470562 GTCGAAGAATGCGTTGAAGAAC 58.529 45.455 0.00 0.00 39.14 3.01
2643 2746 7.923888 GCGATACCTCGGTATATGAACTATAA 58.076 38.462 8.53 0.00 45.15 0.98
2783 2892 1.421410 GCACTGCGTTCCATCCTACG 61.421 60.000 0.00 0.00 40.55 3.51
3088 3205 6.219417 TCTTCAATGGCAAAAGTGAAAAGA 57.781 33.333 0.00 0.00 30.03 2.52
3247 3364 1.682323 GAGTTCCGTCCTCCTATGTCC 59.318 57.143 0.00 0.00 0.00 4.02
3314 3431 9.875460 ATGTATTTCATGTCAGGGGCATATCCC 62.875 44.444 0.00 2.48 44.00 3.85
3361 3478 6.764308 TCCTGGCTCATCTCTTAAAATTTG 57.236 37.500 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.