Multiple sequence alignment - TraesCS6D01G160600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G160600 chr6D 100.000 6814 0 0 1 6814 138903478 138910291 0.000000e+00 12584.0
1 TraesCS6D01G160600 chr6D 86.000 100 14 0 1338 1437 441899542 441899443 2.600000e-19 108.0
2 TraesCS6D01G160600 chr6D 84.466 103 9 5 286 386 412629740 412629643 2.020000e-15 95.3
3 TraesCS6D01G160600 chr6D 84.615 78 12 0 412 489 132756721 132756798 2.040000e-10 78.7
4 TraesCS6D01G160600 chr6A 95.453 2617 61 13 3514 6101 181567394 181569981 0.000000e+00 4120.0
5 TraesCS6D01G160600 chr6A 90.586 2868 121 52 316 3124 181562883 181565660 0.000000e+00 3663.0
6 TraesCS6D01G160600 chr6A 93.366 407 25 2 3113 3519 181566454 181566858 9.780000e-168 601.0
7 TraesCS6D01G160600 chr6A 91.513 271 13 3 6548 6814 181573652 181573916 1.400000e-96 364.0
8 TraesCS6D01G160600 chr6A 86.842 228 18 7 6103 6327 181570097 181570315 1.900000e-60 244.0
9 TraesCS6D01G160600 chr6A 93.103 87 6 0 3 89 181562576 181562662 1.990000e-25 128.0
10 TraesCS6D01G160600 chr6A 86.000 100 14 0 1338 1437 591267548 591267449 2.600000e-19 108.0
11 TraesCS6D01G160600 chr6B 95.621 2489 82 13 3022 5491 238169635 238172115 0.000000e+00 3967.0
12 TraesCS6D01G160600 chr6B 90.095 2938 186 52 2 2853 238166700 238169618 0.000000e+00 3716.0
13 TraesCS6D01G160600 chr6B 94.110 764 31 9 5487 6247 238172137 238172889 0.000000e+00 1149.0
14 TraesCS6D01G160600 chr6B 85.882 255 11 6 6574 6814 238291193 238291436 1.470000e-61 248.0
15 TraesCS6D01G160600 chr6B 88.679 106 9 1 6427 6532 238173872 238173974 7.170000e-25 126.0
16 TraesCS6D01G160600 chr6B 95.000 40 0 1 6548 6585 238174079 238174118 2.050000e-05 62.1
17 TraesCS6D01G160600 chr7A 81.586 391 58 13 3903 4285 567454773 567454389 1.850000e-80 311.0
18 TraesCS6D01G160600 chr7A 82.289 367 36 12 1079 1444 567457074 567456736 2.400000e-74 291.0
19 TraesCS6D01G160600 chr7A 80.899 89 12 5 541 624 716321710 716321622 1.590000e-06 65.8
20 TraesCS6D01G160600 chr7D 81.330 391 59 13 3903 4285 500972280 500971896 8.590000e-79 305.0
21 TraesCS6D01G160600 chr7D 82.289 367 36 11 1079 1444 500974856 500974518 2.400000e-74 291.0
22 TraesCS6D01G160600 chr7D 100.000 59 0 0 3611 3669 301326484 301326426 7.230000e-20 110.0
23 TraesCS6D01G160600 chr7B 81.330 391 59 13 3903 4285 529956044 529955660 8.590000e-79 305.0
24 TraesCS6D01G160600 chr7B 81.744 367 38 13 1079 1444 529958580 529958242 5.200000e-71 279.0
25 TraesCS6D01G160600 chr3A 84.921 126 13 6 1305 1427 485014703 485014581 9.280000e-24 122.0
26 TraesCS6D01G160600 chr3A 94.366 71 4 0 3611 3681 128084179 128084249 7.230000e-20 110.0
27 TraesCS6D01G160600 chr3D 91.011 89 6 2 1340 1427 363871932 363871845 1.200000e-22 119.0
28 TraesCS6D01G160600 chr3D 100.000 59 0 0 3611 3669 217588831 217588773 7.230000e-20 110.0
29 TraesCS6D01G160600 chr3D 100.000 59 0 0 3611 3669 422517732 422517790 7.230000e-20 110.0
30 TraesCS6D01G160600 chr5D 95.455 66 3 0 3611 3676 483269427 483269492 9.350000e-19 106.0
31 TraesCS6D01G160600 chr2D 95.522 67 2 1 3611 3677 489409263 489409198 9.350000e-19 106.0
32 TraesCS6D01G160600 chr2A 93.056 72 3 2 3611 3680 24138152 24138223 3.360000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G160600 chr6D 138903478 138910291 6813 False 12584.00 12584 100.0000 1 6814 1 chr6D.!!$F2 6813
1 TraesCS6D01G160600 chr6A 181562576 181573916 11340 False 1520.00 4120 91.8105 3 6814 6 chr6A.!!$F1 6811
2 TraesCS6D01G160600 chr6B 238166700 238174118 7418 False 1804.02 3967 92.7010 2 6585 5 chr6B.!!$F2 6583
3 TraesCS6D01G160600 chr7A 567454389 567457074 2685 True 301.00 311 81.9375 1079 4285 2 chr7A.!!$R2 3206
4 TraesCS6D01G160600 chr7D 500971896 500974856 2960 True 298.00 305 81.8095 1079 4285 2 chr7D.!!$R2 3206
5 TraesCS6D01G160600 chr7B 529955660 529958580 2920 True 292.00 305 81.5370 1079 4285 2 chr7B.!!$R1 3206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 244 0.828677 TTTAGGCTTAGACCTCCCGC 59.171 55.000 0.00 0.0 41.50 6.13 F
1021 1125 0.465824 CTACTCATCGTCGTCCCCCT 60.466 60.000 0.00 0.0 0.00 4.79 F
1505 1619 1.002624 TGGTTCTGGATTCGGGCAC 60.003 57.895 0.00 0.0 0.00 5.01 F
1974 2227 1.067821 GGCCGTGAGAAGTATCTGGAG 59.932 57.143 0.00 0.0 35.54 3.86 F
2375 2973 2.223745 GTTGGAGTTTTAGCCCGTTGA 58.776 47.619 0.00 0.0 0.00 3.18 F
2891 4082 0.732571 CAGCACGTGGAACTTGTGTT 59.267 50.000 18.88 0.0 38.51 3.32 F
3580 6246 0.537143 ATGTTGCCGCCACTCTTTCA 60.537 50.000 0.00 0.0 0.00 2.69 F
4955 8074 1.414919 TGAGTAACCGCAACACCTCTT 59.585 47.619 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1165 1.465623 CGGGGAGGTCTAGGGCTAT 59.534 63.158 0.00 0.00 0.00 2.97 R
2872 4063 0.732571 AACACAAGTTCCACGTGCTG 59.267 50.000 10.91 4.28 33.89 4.41 R
2873 4064 0.732571 CAACACAAGTTCCACGTGCT 59.267 50.000 10.91 0.00 35.28 4.40 R
2877 4068 1.003851 ACGACAACACAAGTTCCACG 58.996 50.000 0.00 0.00 35.28 4.94 R
3535 6201 2.095263 CCATGTAAACTGGCAAGGAACG 60.095 50.000 0.00 0.00 0.00 3.95 R
4379 7494 0.454600 GTGCATGAATGGGCAGACAG 59.545 55.000 0.00 0.00 41.35 3.51 R
5012 8131 0.526211 TCCCATGAGAACAGTCGACG 59.474 55.000 10.46 7.86 0.00 5.12 R
6542 13700 0.173708 TGCACGTGGGGTTGAAAAAC 59.826 50.000 18.88 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.853355 ATTTTCCACCATTTGTGCCAA 57.147 38.095 0.00 0.00 44.01 4.52
108 140 5.179045 AGCTCAGACAAAAATGTCTTGTG 57.821 39.130 8.68 7.21 45.94 3.33
117 149 8.636213 AGACAAAAATGTCTTGTGAATCTCAAT 58.364 29.630 5.68 0.00 45.94 2.57
118 150 8.583810 ACAAAAATGTCTTGTGAATCTCAATG 57.416 30.769 0.00 0.00 35.70 2.82
149 181 6.586344 AGTGGTATGTGAATATTGTCTGAGG 58.414 40.000 0.00 0.00 0.00 3.86
150 182 6.156949 AGTGGTATGTGAATATTGTCTGAGGT 59.843 38.462 0.00 0.00 0.00 3.85
188 221 6.627395 TCAATCATTTACACCGACAACTTT 57.373 33.333 0.00 0.00 0.00 2.66
189 222 7.033530 TCAATCATTTACACCGACAACTTTT 57.966 32.000 0.00 0.00 0.00 2.27
195 228 8.675504 TCATTTACACCGACAACTTTTCTTTTA 58.324 29.630 0.00 0.00 0.00 1.52
200 233 4.643334 ACCGACAACTTTTCTTTTAGGCTT 59.357 37.500 0.00 0.00 0.00 4.35
210 243 2.764572 TCTTTTAGGCTTAGACCTCCCG 59.235 50.000 0.00 0.00 41.50 5.14
211 244 0.828677 TTTAGGCTTAGACCTCCCGC 59.171 55.000 0.00 0.00 41.50 6.13
233 267 7.201714 CCCGCAGTGGAGTATTATATCTAGTAC 60.202 44.444 0.00 0.00 42.00 2.73
242 276 9.469807 GAGTATTATATCTAGTACCATGCATGC 57.530 37.037 21.69 11.82 0.00 4.06
243 277 8.981659 AGTATTATATCTAGTACCATGCATGCA 58.018 33.333 25.04 25.04 0.00 3.96
245 279 8.728337 ATTATATCTAGTACCATGCATGCAAG 57.272 34.615 26.68 20.93 0.00 4.01
269 303 1.342819 AGGCTGATCACGATAGGAAGC 59.657 52.381 0.00 0.00 43.77 3.86
275 309 5.623141 GCTGATCACGATAGGAAGCATCATA 60.623 44.000 0.00 0.00 43.77 2.15
285 319 9.891828 CGATAGGAAGCATCATATTCTAGTATC 57.108 37.037 0.00 0.00 32.94 2.24
336 370 7.210174 TCTTCACAGTGCATAGTATCATAACC 58.790 38.462 0.00 0.00 0.00 2.85
473 513 2.416431 CCTCAGCAAAATGCCTAGTTGC 60.416 50.000 6.86 6.86 46.52 4.17
489 529 4.155063 AGTTGCCATGCATGATACTACA 57.845 40.909 28.31 12.34 38.76 2.74
490 530 4.722220 AGTTGCCATGCATGATACTACAT 58.278 39.130 28.31 10.30 38.76 2.29
491 531 5.868454 AGTTGCCATGCATGATACTACATA 58.132 37.500 28.31 0.57 38.76 2.29
492 532 6.479006 AGTTGCCATGCATGATACTACATAT 58.521 36.000 28.31 5.95 38.76 1.78
493 533 6.373495 AGTTGCCATGCATGATACTACATATG 59.627 38.462 28.31 7.49 38.76 1.78
494 534 6.052405 TGCCATGCATGATACTACATATGA 57.948 37.500 28.31 0.00 31.71 2.15
495 535 5.876460 TGCCATGCATGATACTACATATGAC 59.124 40.000 28.31 4.00 31.71 3.06
496 536 5.876460 GCCATGCATGATACTACATATGACA 59.124 40.000 28.31 0.00 0.00 3.58
497 537 6.183360 GCCATGCATGATACTACATATGACAC 60.183 42.308 28.31 0.00 0.00 3.67
500 540 8.996271 CATGCATGATACTACATATGACACTTT 58.004 33.333 22.59 0.00 0.00 2.66
501 541 8.593492 TGCATGATACTACATATGACACTTTC 57.407 34.615 10.38 0.13 0.00 2.62
511 551 6.003326 ACATATGACACTTTCATTGTGACCA 58.997 36.000 10.38 0.00 42.87 4.02
512 552 6.489700 ACATATGACACTTTCATTGTGACCAA 59.510 34.615 10.38 0.00 42.87 3.67
691 754 7.277319 GTCTAATTAGTGTGTGGCTACTAAACC 59.723 40.741 12.19 0.00 41.25 3.27
699 762 3.120321 TGGCTACTAAACCACACTGTG 57.880 47.619 6.19 6.19 0.00 3.66
717 780 8.128582 CACACTGTGCTGAACTTCTTATTTTAA 58.871 33.333 7.90 0.00 0.00 1.52
737 800 9.893305 ATTTTAAAGTCAACCGTGAAAGAATAG 57.107 29.630 0.00 0.00 34.87 1.73
741 804 3.500680 GTCAACCGTGAAAGAATAGCCAA 59.499 43.478 0.00 0.00 34.87 4.52
742 805 4.023536 GTCAACCGTGAAAGAATAGCCAAA 60.024 41.667 0.00 0.00 34.87 3.28
743 806 4.580995 TCAACCGTGAAAGAATAGCCAAAA 59.419 37.500 0.00 0.00 0.00 2.44
744 807 4.499037 ACCGTGAAAGAATAGCCAAAAC 57.501 40.909 0.00 0.00 0.00 2.43
745 808 3.254903 ACCGTGAAAGAATAGCCAAAACC 59.745 43.478 0.00 0.00 0.00 3.27
746 809 3.488489 CGTGAAAGAATAGCCAAAACCG 58.512 45.455 0.00 0.00 0.00 4.44
747 810 3.058501 CGTGAAAGAATAGCCAAAACCGT 60.059 43.478 0.00 0.00 0.00 4.83
748 811 4.226761 GTGAAAGAATAGCCAAAACCGTG 58.773 43.478 0.00 0.00 0.00 4.94
749 812 3.254657 TGAAAGAATAGCCAAAACCGTGG 59.745 43.478 0.00 0.00 42.05 4.94
750 813 2.871096 AGAATAGCCAAAACCGTGGA 57.129 45.000 0.00 0.00 41.65 4.02
765 856 7.404671 AAACCGTGGAAAATAATCTTAGCAT 57.595 32.000 0.00 0.00 0.00 3.79
997 1101 2.676822 ACGCGCTCCTCTTCCTCA 60.677 61.111 5.73 0.00 0.00 3.86
1021 1125 0.465824 CTACTCATCGTCGTCCCCCT 60.466 60.000 0.00 0.00 0.00 4.79
1243 1353 3.626924 GTGGTGGAGCTCACGGGT 61.627 66.667 17.19 0.00 46.96 5.28
1505 1619 1.002624 TGGTTCTGGATTCGGGCAC 60.003 57.895 0.00 0.00 0.00 5.01
1636 1751 1.207791 AGGATGGTCGCTTCTTGGAT 58.792 50.000 0.00 0.00 0.00 3.41
1731 1864 2.161855 TGGTGTTGGATTTGCTAGCTG 58.838 47.619 17.23 0.00 0.00 4.24
1865 2097 9.449719 CTAATGGGTGTCTAGTTATTTTGTTCT 57.550 33.333 0.00 0.00 0.00 3.01
1872 2104 9.220767 GTGTCTAGTTATTTTGTTCTTCCTCAT 57.779 33.333 0.00 0.00 0.00 2.90
1973 2226 1.112113 GGCCGTGAGAAGTATCTGGA 58.888 55.000 0.00 0.00 35.54 3.86
1974 2227 1.067821 GGCCGTGAGAAGTATCTGGAG 59.932 57.143 0.00 0.00 35.54 3.86
2018 2271 6.747414 AAGGGGGATATTTGGATTAAAAGC 57.253 37.500 0.00 0.00 0.00 3.51
2023 2276 5.221441 GGGATATTTGGATTAAAAGCGCCTT 60.221 40.000 2.29 0.00 0.00 4.35
2026 2279 3.586100 TTGGATTAAAAGCGCCTTTCC 57.414 42.857 7.37 4.11 31.99 3.13
2375 2973 2.223745 GTTGGAGTTTTAGCCCGTTGA 58.776 47.619 0.00 0.00 0.00 3.18
2543 3141 4.042062 TGGAGTGATTGTCTTGTCCTTCAT 59.958 41.667 0.00 0.00 0.00 2.57
2551 3149 6.707440 TTGTCTTGTCCTTCATTGCTTTTA 57.293 33.333 0.00 0.00 0.00 1.52
2553 3151 7.288810 TGTCTTGTCCTTCATTGCTTTTATT 57.711 32.000 0.00 0.00 0.00 1.40
2554 3152 8.402798 TGTCTTGTCCTTCATTGCTTTTATTA 57.597 30.769 0.00 0.00 0.00 0.98
2555 3153 8.855110 TGTCTTGTCCTTCATTGCTTTTATTAA 58.145 29.630 0.00 0.00 0.00 1.40
2891 4082 0.732571 CAGCACGTGGAACTTGTGTT 59.267 50.000 18.88 0.00 38.51 3.32
2892 4083 0.732571 AGCACGTGGAACTTGTGTTG 59.267 50.000 18.88 0.00 38.51 3.33
2907 4098 2.286833 TGTGTTGTCGTGCTTAGCTTTC 59.713 45.455 5.60 0.00 0.00 2.62
2909 4100 3.002348 GTGTTGTCGTGCTTAGCTTTCTT 59.998 43.478 5.60 0.00 0.00 2.52
3010 4202 1.844497 GCCCTATACAGTTCCCTTGGT 59.156 52.381 0.00 0.00 0.00 3.67
3017 4209 3.721087 ACAGTTCCCTTGGTTCCATAG 57.279 47.619 0.00 0.00 0.00 2.23
3020 4212 1.285078 GTTCCCTTGGTTCCATAGCCT 59.715 52.381 0.00 0.00 0.00 4.58
3250 5251 5.411361 ACAAACTCAGCGTTCTATAATTGCA 59.589 36.000 0.00 0.00 33.90 4.08
3580 6246 0.537143 ATGTTGCCGCCACTCTTTCA 60.537 50.000 0.00 0.00 0.00 2.69
3716 6383 6.991938 TGAAGAAACCTATTTTCACAATGGG 58.008 36.000 0.00 0.00 45.50 4.00
3721 6388 5.835113 ACCTATTTTCACAATGGGAATCG 57.165 39.130 0.00 0.00 33.14 3.34
4250 7365 4.556501 GCAGAACATCGACAAAATTCCACA 60.557 41.667 0.00 0.00 0.00 4.17
4337 7452 7.397192 AGTTTTGACTTTATGTTCAGGGCATAT 59.603 33.333 0.00 0.00 0.00 1.78
4402 7517 2.440065 GCCCATTCATGCACGGGA 60.440 61.111 15.16 0.00 41.62 5.14
4492 7607 5.574188 AGTGGAGAAAATATCAAGCAGGTT 58.426 37.500 0.00 0.00 0.00 3.50
4623 7738 6.863645 GGCTAGAATTTTGACTTTTGAGAACC 59.136 38.462 0.00 0.00 0.00 3.62
4669 7786 5.380043 CATAGGGCCATCACTGTATTTCTT 58.620 41.667 6.18 0.00 0.00 2.52
4784 7901 5.523369 GTGACAATTATTCCATTAGCTGGC 58.477 41.667 0.00 0.00 45.52 4.85
4820 7937 9.669353 CCATGAGTTGATTTTGTATACTATTGC 57.331 33.333 4.17 0.00 0.00 3.56
4821 7938 9.669353 CATGAGTTGATTTTGTATACTATTGCC 57.331 33.333 4.17 0.00 0.00 4.52
4903 8020 9.809096 GATGTAGAACAAGAAAGATGATACAGA 57.191 33.333 0.00 0.00 0.00 3.41
4955 8074 1.414919 TGAGTAACCGCAACACCTCTT 59.585 47.619 0.00 0.00 0.00 2.85
4956 8075 2.158871 TGAGTAACCGCAACACCTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
4957 8076 2.876550 GAGTAACCGCAACACCTCTTTT 59.123 45.455 0.00 0.00 0.00 2.27
5009 8128 3.582647 TCTTTCAGGGTACAGCTGATGAA 59.417 43.478 23.35 17.48 0.00 2.57
5012 8131 2.497675 TCAGGGTACAGCTGATGAAGTC 59.502 50.000 23.35 3.03 0.00 3.01
5270 8389 3.028094 AGCGTAGACCATAGGGAGAAA 57.972 47.619 0.00 0.00 38.05 2.52
5285 8404 2.353109 GGAGAAAACAAGGCCAAGCATC 60.353 50.000 5.01 0.00 0.00 3.91
5310 8429 6.566753 CGATCATAGAAAGAGCACAGATCGTA 60.567 42.308 11.89 0.00 44.86 3.43
5815 8961 5.649831 ACATGCTCCTCAATTTTCTTCCTAC 59.350 40.000 0.00 0.00 0.00 3.18
5833 8979 7.841729 TCTTCCTACTTAGATGAGGTTCAGATT 59.158 37.037 0.00 0.00 0.00 2.40
5881 9027 1.686325 GATAGGCCTGGCTCGGTTCA 61.686 60.000 17.99 0.00 0.00 3.18
5882 9028 1.271840 ATAGGCCTGGCTCGGTTCAA 61.272 55.000 17.99 0.00 0.00 2.69
5883 9029 1.899437 TAGGCCTGGCTCGGTTCAAG 61.899 60.000 17.99 0.00 0.00 3.02
5884 9030 3.435186 GCCTGGCTCGGTTCAAGC 61.435 66.667 12.43 0.00 39.09 4.01
5885 9031 2.348998 CCTGGCTCGGTTCAAGCT 59.651 61.111 0.00 0.00 39.75 3.74
5886 9032 1.743252 CCTGGCTCGGTTCAAGCTC 60.743 63.158 0.00 0.00 39.75 4.09
5918 9064 4.084118 GCTCGATCTGATGTTATTCCAAGC 60.084 45.833 0.00 0.00 0.00 4.01
5922 9068 3.270027 TCTGATGTTATTCCAAGCACGG 58.730 45.455 0.00 0.00 0.00 4.94
6051 9197 1.597742 CAGTTGAGGAAGGTGGTGTG 58.402 55.000 0.00 0.00 0.00 3.82
6164 9427 1.366319 ATTGGTCAGCTGGGAGTTCT 58.634 50.000 15.13 0.00 0.00 3.01
6207 9470 4.405116 TGCCTTGCATCTGTTTCTTTTT 57.595 36.364 0.00 0.00 31.71 1.94
6208 9471 4.370917 TGCCTTGCATCTGTTTCTTTTTC 58.629 39.130 0.00 0.00 31.71 2.29
6209 9472 4.099881 TGCCTTGCATCTGTTTCTTTTTCT 59.900 37.500 0.00 0.00 31.71 2.52
6213 9476 7.404203 CCTTGCATCTGTTTCTTTTTCTTTTG 58.596 34.615 0.00 0.00 0.00 2.44
6258 9521 3.685756 GGGGTGATGTTTTCATTGCATTG 59.314 43.478 2.08 2.08 41.05 2.82
6259 9522 3.125658 GGGTGATGTTTTCATTGCATTGC 59.874 43.478 0.46 0.46 41.05 3.56
6260 9523 3.747010 GGTGATGTTTTCATTGCATTGCA 59.253 39.130 7.38 7.38 41.05 4.08
6261 9524 4.393680 GGTGATGTTTTCATTGCATTGCAT 59.606 37.500 12.95 0.00 41.05 3.96
6263 9526 5.792962 GTGATGTTTTCATTGCATTGCATTG 59.207 36.000 21.75 21.75 41.05 2.82
6264 9527 4.148563 TGTTTTCATTGCATTGCATTGC 57.851 36.364 23.33 23.33 39.03 3.56
6271 9534 3.462427 GCATTGCATTGCATGGGAA 57.538 47.368 24.71 0.00 42.31 3.97
6272 9535 1.011333 GCATTGCATTGCATGGGAAC 58.989 50.000 24.71 0.00 42.31 3.62
6275 9539 5.020071 GCATTGCATTGCATGGGAACAAG 62.020 47.826 24.71 0.00 42.31 3.16
6291 9555 3.609103 ACAAGTTCTCATCGCACAAAC 57.391 42.857 0.00 0.00 0.00 2.93
6311 9575 2.545526 ACTTGCTCACTCAACATCAACG 59.454 45.455 0.00 0.00 0.00 4.10
6382 11388 1.338020 GGTCAGCTCAGTTTGTTTGGG 59.662 52.381 0.00 0.00 0.00 4.12
6392 11398 3.687212 CAGTTTGTTTGGGGTTTTTGGAC 59.313 43.478 0.00 0.00 0.00 4.02
6472 12318 4.753610 GGCTTCGTAAACCATAATACCTCC 59.246 45.833 0.00 0.00 0.00 4.30
6479 12325 6.583806 CGTAAACCATAATACCTCCGATACAC 59.416 42.308 0.00 0.00 0.00 2.90
6480 12326 6.742559 AAACCATAATACCTCCGATACACT 57.257 37.500 0.00 0.00 0.00 3.55
6481 12327 6.742559 AACCATAATACCTCCGATACACTT 57.257 37.500 0.00 0.00 0.00 3.16
6484 12330 7.571025 ACCATAATACCTCCGATACACTTTTT 58.429 34.615 0.00 0.00 0.00 1.94
6522 13680 1.616159 TTTTGAAAAGGAGGCCCTCG 58.384 50.000 4.29 0.00 43.48 4.63
6528 13686 1.617322 AAAGGAGGCCCTCGTTTTTC 58.383 50.000 22.42 0.11 43.14 2.29
6532 13690 2.027100 AGGAGGCCCTCGTTTTTCTAAG 60.027 50.000 4.29 0.00 38.86 2.18
6533 13691 2.357075 GAGGCCCTCGTTTTTCTAAGG 58.643 52.381 0.00 0.00 0.00 2.69
6535 13693 2.027100 AGGCCCTCGTTTTTCTAAGGAG 60.027 50.000 0.00 0.00 0.00 3.69
6536 13694 2.357075 GCCCTCGTTTTTCTAAGGAGG 58.643 52.381 15.72 15.72 43.09 4.30
6538 13696 2.357075 CCTCGTTTTTCTAAGGAGGCC 58.643 52.381 11.83 0.00 38.01 5.19
6539 13697 2.357075 CTCGTTTTTCTAAGGAGGCCC 58.643 52.381 0.00 0.00 0.00 5.80
6541 13699 2.027469 TCGTTTTTCTAAGGAGGCCCTC 60.027 50.000 0.73 0.73 43.48 4.30
6542 13700 2.357075 GTTTTTCTAAGGAGGCCCTCG 58.643 52.381 4.29 0.00 43.48 4.63
6543 13701 1.652947 TTTTCTAAGGAGGCCCTCGT 58.347 50.000 4.29 1.51 43.48 4.18
6544 13702 1.652947 TTTCTAAGGAGGCCCTCGTT 58.347 50.000 21.32 21.32 43.48 3.85
6545 13703 1.652947 TTCTAAGGAGGCCCTCGTTT 58.347 50.000 22.59 13.18 43.48 3.60
6588 13835 0.946221 CGTGGCCTCACTGTGAAGTC 60.946 60.000 12.16 8.02 41.53 3.01
6609 13856 1.746517 GCCGTGTGGATACCCCTAG 59.253 63.158 0.00 0.00 37.49 3.02
6610 13857 1.047034 GCCGTGTGGATACCCCTAGT 61.047 60.000 0.00 0.00 37.49 2.57
6611 13858 0.750850 CCGTGTGGATACCCCTAGTG 59.249 60.000 0.00 0.00 37.49 2.74
6612 13859 0.104304 CGTGTGGATACCCCTAGTGC 59.896 60.000 0.00 0.00 35.38 4.40
6613 13860 0.468648 GTGTGGATACCCCTAGTGCC 59.531 60.000 0.00 0.00 35.38 5.01
6614 13861 0.043485 TGTGGATACCCCTAGTGCCA 59.957 55.000 0.00 0.00 33.38 4.92
6615 13862 0.759346 GTGGATACCCCTAGTGCCAG 59.241 60.000 0.00 0.00 35.62 4.85
6625 13872 1.271054 CCTAGTGCCAGTGGATATGCC 60.271 57.143 15.20 0.00 37.10 4.40
6668 13915 1.388065 CGCCAGAGTCGGAGGAGAAT 61.388 60.000 5.36 0.00 0.00 2.40
6677 13924 2.279784 GAGGAGAATCTGCCGGCG 60.280 66.667 23.90 16.91 33.73 6.46
6701 13948 2.037136 CAGCAAGGCGGTGAGAAGG 61.037 63.158 0.00 0.00 46.47 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.717530 GATTGGTACAGTAGCGTCTCG 58.282 52.381 5.32 0.00 42.39 4.04
29 30 2.932614 CAGCACTAGCATTACAGTCCAC 59.067 50.000 0.00 0.00 45.49 4.02
149 181 7.975866 AATGATTGAAAATACGATGAGCAAC 57.024 32.000 0.00 0.00 0.00 4.17
150 182 9.502145 GTAAATGATTGAAAATACGATGAGCAA 57.498 29.630 0.00 0.00 0.00 3.91
188 221 3.197116 CGGGAGGTCTAAGCCTAAAAGAA 59.803 47.826 0.00 0.00 39.34 2.52
189 222 2.764572 CGGGAGGTCTAAGCCTAAAAGA 59.235 50.000 0.00 0.00 39.34 2.52
195 228 2.038975 TGCGGGAGGTCTAAGCCT 59.961 61.111 0.00 0.00 42.53 4.58
200 233 2.768045 TCCACTGCGGGAGGTCTA 59.232 61.111 0.51 0.00 34.36 2.59
210 243 8.577048 TGGTACTAGATATAATACTCCACTGC 57.423 38.462 0.00 0.00 0.00 4.40
222 256 6.070596 AGCTTGCATGCATGGTACTAGATATA 60.071 38.462 30.06 7.53 34.99 0.86
226 260 2.171237 AGCTTGCATGCATGGTACTAGA 59.829 45.455 30.06 9.34 34.99 2.43
233 267 0.249322 GCCTTAGCTTGCATGCATGG 60.249 55.000 28.66 21.56 35.50 3.66
245 279 2.558795 TCCTATCGTGATCAGCCTTAGC 59.441 50.000 0.00 0.00 40.32 3.09
255 289 7.180322 AGAATATGATGCTTCCTATCGTGAT 57.820 36.000 0.00 0.00 0.00 3.06
311 345 7.069950 AGGTTATGATACTATGCACTGTGAAGA 59.930 37.037 12.86 0.00 0.00 2.87
314 348 6.323739 TCAGGTTATGATACTATGCACTGTGA 59.676 38.462 12.86 0.00 31.12 3.58
315 349 6.515832 TCAGGTTATGATACTATGCACTGTG 58.484 40.000 2.76 2.76 31.12 3.66
316 350 6.731292 TCAGGTTATGATACTATGCACTGT 57.269 37.500 0.00 0.00 31.12 3.55
365 399 7.054491 TGTACTAGTATGTGTCATGCATCAT 57.946 36.000 5.75 0.00 0.00 2.45
367 401 7.147976 TGATGTACTAGTATGTGTCATGCATC 58.852 38.462 5.75 10.73 0.00 3.91
473 513 7.101700 AGTGTCATATGTAGTATCATGCATGG 58.898 38.462 25.97 8.24 0.00 3.66
489 529 6.071952 GGTTGGTCACAATGAAAGTGTCATAT 60.072 38.462 0.00 0.00 44.85 1.78
490 530 5.240623 GGTTGGTCACAATGAAAGTGTCATA 59.759 40.000 0.00 0.00 44.85 2.15
491 531 4.037923 GGTTGGTCACAATGAAAGTGTCAT 59.962 41.667 0.00 0.00 44.85 3.06
492 532 3.380004 GGTTGGTCACAATGAAAGTGTCA 59.620 43.478 0.00 0.00 44.85 3.58
493 533 3.632145 AGGTTGGTCACAATGAAAGTGTC 59.368 43.478 0.00 0.00 44.85 3.67
495 535 5.762045 CTTAGGTTGGTCACAATGAAAGTG 58.238 41.667 0.00 0.00 39.13 3.16
496 536 4.278419 GCTTAGGTTGGTCACAATGAAAGT 59.722 41.667 0.00 0.00 39.13 2.66
497 537 4.278170 TGCTTAGGTTGGTCACAATGAAAG 59.722 41.667 0.00 0.00 39.13 2.62
500 540 3.500448 TGCTTAGGTTGGTCACAATGA 57.500 42.857 0.00 0.00 39.13 2.57
501 541 4.789012 AATGCTTAGGTTGGTCACAATG 57.211 40.909 0.00 0.00 39.13 2.82
652 713 1.123928 ATTAGACTTCCCCGCTCTGG 58.876 55.000 0.00 0.00 37.55 3.86
653 714 2.990066 AATTAGACTTCCCCGCTCTG 57.010 50.000 0.00 0.00 0.00 3.35
654 715 3.385111 CACTAATTAGACTTCCCCGCTCT 59.615 47.826 19.38 0.00 0.00 4.09
655 716 3.132467 ACACTAATTAGACTTCCCCGCTC 59.868 47.826 19.38 0.00 0.00 5.03
657 718 3.195661 CACACTAATTAGACTTCCCCGC 58.804 50.000 19.38 0.00 0.00 6.13
658 719 4.181578 CACACACTAATTAGACTTCCCCG 58.818 47.826 19.38 1.67 0.00 5.73
664 727 7.713734 TTAGTAGCCACACACTAATTAGACT 57.286 36.000 19.38 10.46 33.42 3.24
691 754 5.679734 AATAAGAAGTTCAGCACAGTGTG 57.320 39.130 19.27 19.27 36.51 3.82
696 759 8.898761 TGACTTTAAAATAAGAAGTTCAGCACA 58.101 29.630 5.50 0.00 34.02 4.57
699 762 9.181805 GGTTGACTTTAAAATAAGAAGTTCAGC 57.818 33.333 5.50 0.00 34.02 4.26
717 780 3.751698 GGCTATTCTTTCACGGTTGACTT 59.248 43.478 0.00 0.00 0.00 3.01
737 800 4.816392 AGATTATTTTCCACGGTTTTGGC 58.184 39.130 0.00 0.00 36.48 4.52
741 804 6.827586 TGCTAAGATTATTTTCCACGGTTT 57.172 33.333 0.00 0.00 0.00 3.27
742 805 7.404671 AATGCTAAGATTATTTTCCACGGTT 57.595 32.000 0.00 0.00 0.00 4.44
743 806 7.404671 AAATGCTAAGATTATTTTCCACGGT 57.595 32.000 0.00 0.00 0.00 4.83
744 807 7.973388 TGAAAATGCTAAGATTATTTTCCACGG 59.027 33.333 15.11 0.00 44.31 4.94
745 808 8.909708 TGAAAATGCTAAGATTATTTTCCACG 57.090 30.769 15.11 0.00 44.31 4.94
746 809 9.860898 ACTGAAAATGCTAAGATTATTTTCCAC 57.139 29.630 15.11 0.00 44.31 4.02
821 919 6.164417 TGTGGTAGTTGCTGAAAGTTACTA 57.836 37.500 0.00 0.00 35.30 1.82
997 1101 2.496111 GGACGACGATGAGTAGAGGAT 58.504 52.381 0.00 0.00 0.00 3.24
1021 1125 2.754658 GAGACGGCGAGAGGGGAA 60.755 66.667 16.62 0.00 0.00 3.97
1061 1165 1.465623 CGGGGAGGTCTAGGGCTAT 59.534 63.158 0.00 0.00 0.00 2.97
1457 1571 4.948004 CCCCAATCTAAAGTCTAACCCAAC 59.052 45.833 0.00 0.00 0.00 3.77
1587 1702 2.031157 GCAATCCGAATATTTCCACCGG 60.031 50.000 0.00 0.00 41.36 5.28
1598 1713 2.540515 CTACTGACACGCAATCCGAAT 58.459 47.619 0.00 0.00 41.02 3.34
1636 1751 3.383185 AGAAGTTGGCATTTTTCGTCCAA 59.617 39.130 0.00 0.00 36.35 3.53
1882 2114 9.787435 TCACAATTTGGTAGTAGTTTATTCTGT 57.213 29.630 0.78 0.00 0.00 3.41
1973 2226 3.046374 ACTACCCAAGACTGAACAACCT 58.954 45.455 0.00 0.00 0.00 3.50
1974 2227 3.487120 ACTACCCAAGACTGAACAACC 57.513 47.619 0.00 0.00 0.00 3.77
2018 2271 1.948104 TATCCAATCACGGAAAGGCG 58.052 50.000 0.00 0.00 38.95 5.52
2219 2817 5.227805 CACGTGTGCTTGCATAATAATGTTC 59.772 40.000 7.58 0.00 35.38 3.18
2341 2939 7.755582 AAAACTCCAACGAAAGAAGAAATTG 57.244 32.000 0.00 0.00 0.00 2.32
2375 2973 5.329191 TTCTCCATCCAATGCATAGGAAT 57.671 39.130 0.00 0.00 37.48 3.01
2419 3017 8.492782 ACCTCTCTTCATCAACAGATTCATTAT 58.507 33.333 0.00 0.00 0.00 1.28
2438 3036 5.541868 TCTCATCAGAAACTCAAACCTCTCT 59.458 40.000 0.00 0.00 0.00 3.10
2509 3107 5.835280 AGACAATCACTCCACCAAAGAATTT 59.165 36.000 0.00 0.00 40.26 1.82
2555 3153 9.914131 GCTAGGTAAAGAACAAAAATCTTGATT 57.086 29.630 0.00 0.00 37.22 2.57
2864 4055 4.722700 CCACGTGCTGGGGAAGGG 62.723 72.222 10.91 0.00 36.18 3.95
2866 4057 1.966451 GTTCCACGTGCTGGGGAAG 60.966 63.158 10.91 0.00 41.11 3.46
2867 4058 1.990160 AAGTTCCACGTGCTGGGGAA 61.990 55.000 10.91 8.91 41.06 3.97
2868 4059 2.448582 AAGTTCCACGTGCTGGGGA 61.449 57.895 10.91 0.00 41.06 4.81
2869 4060 2.113139 AAGTTCCACGTGCTGGGG 59.887 61.111 10.91 0.00 41.06 4.96
2870 4061 1.525995 ACAAGTTCCACGTGCTGGG 60.526 57.895 10.91 0.00 41.06 4.45
2871 4062 1.095228 ACACAAGTTCCACGTGCTGG 61.095 55.000 10.91 1.96 42.29 4.85
2872 4063 0.732571 AACACAAGTTCCACGTGCTG 59.267 50.000 10.91 4.28 33.89 4.41
2873 4064 0.732571 CAACACAAGTTCCACGTGCT 59.267 50.000 10.91 0.00 35.28 4.40
2877 4068 1.003851 ACGACAACACAAGTTCCACG 58.996 50.000 0.00 0.00 35.28 4.94
2881 4072 2.825086 AAGCACGACAACACAAGTTC 57.175 45.000 0.00 0.00 35.28 3.01
2891 4082 2.032030 GCAAAGAAAGCTAAGCACGACA 60.032 45.455 0.00 0.00 0.00 4.35
2892 4083 2.575363 GCAAAGAAAGCTAAGCACGAC 58.425 47.619 0.00 0.00 0.00 4.34
3010 4202 2.595095 CCCGGCAAGGCTATGGAA 59.405 61.111 0.00 0.00 39.21 3.53
3020 4212 3.808218 AAGAAGCTTGGCCCGGCAA 62.808 57.895 12.58 6.14 0.00 4.52
3250 5251 7.521669 AGCCTCATAGCTTATTTATGACCTTT 58.478 34.615 0.00 0.00 41.41 3.11
3535 6201 2.095263 CCATGTAAACTGGCAAGGAACG 60.095 50.000 0.00 0.00 0.00 3.95
3580 6246 7.248976 TCCAAGGTACTATATCACAGGATGAT 58.751 38.462 0.00 0.00 45.62 2.45
3716 6383 2.102252 AGAGAGGTTCATCCAGCGATTC 59.898 50.000 0.00 0.00 39.02 2.52
3721 6388 4.100808 AGACATAAGAGAGGTTCATCCAGC 59.899 45.833 0.00 0.00 39.02 4.85
4337 7452 4.481368 AAATGTCTAGGCGGATAACACA 57.519 40.909 0.00 0.00 0.00 3.72
4379 7494 0.454600 GTGCATGAATGGGCAGACAG 59.545 55.000 0.00 0.00 41.35 3.51
4402 7517 9.840427 GTAACATTACTAGAATGCAAATGTGTT 57.160 29.630 10.54 6.21 39.88 3.32
4669 7786 6.486657 GCATTACCATTATAGAGACTTTGGCA 59.513 38.462 0.00 0.00 0.00 4.92
4751 7868 7.441890 TGGAATAATTGTCACGTGTTTACAT 57.558 32.000 16.51 1.54 0.00 2.29
4784 7901 8.246180 ACAAAATCAACTCATGGTAAAGCTATG 58.754 33.333 0.00 0.00 37.40 2.23
4903 8020 8.897872 TTTCGGTCTTCTACAAAAGAATACTT 57.102 30.769 4.09 0.00 43.32 2.24
5009 8128 1.200252 CCATGAGAACAGTCGACGACT 59.800 52.381 24.44 24.44 44.44 4.18
5012 8131 0.526211 TCCCATGAGAACAGTCGACG 59.474 55.000 10.46 7.86 0.00 5.12
5270 8389 1.098050 GATCGATGCTTGGCCTTGTT 58.902 50.000 0.54 0.00 0.00 2.83
5285 8404 4.616381 CGATCTGTGCTCTTTCTATGATCG 59.384 45.833 0.00 0.00 43.33 3.69
5310 8429 1.123928 CTGCCCCTCGGTTTATCTCT 58.876 55.000 0.00 0.00 0.00 3.10
5833 8979 8.383175 AGTCCACAACTAAATCCATCTAAAAGA 58.617 33.333 0.00 0.00 36.07 2.52
5869 9015 2.097038 CGAGCTTGAACCGAGCCAG 61.097 63.158 0.00 0.00 41.50 4.85
5898 9044 4.318333 CGTGCTTGGAATAACATCAGATCG 60.318 45.833 0.00 0.00 0.00 3.69
5918 9064 3.652274 AGACCAAATTGCAAAATCCGTG 58.348 40.909 1.71 0.00 0.00 4.94
5922 9068 4.168760 CGGAGAGACCAAATTGCAAAATC 58.831 43.478 1.71 0.00 38.90 2.17
6067 9215 4.160252 TGCCCAAAATTATCTGAAGAAGCC 59.840 41.667 0.00 0.00 0.00 4.35
6070 9218 5.185635 CACCTGCCCAAAATTATCTGAAGAA 59.814 40.000 0.00 0.00 0.00 2.52
6164 9427 6.460953 GGCATTTTCCTTGAACAAACTAGACA 60.461 38.462 0.00 0.00 0.00 3.41
6199 9462 8.695456 AGGCATAAGACTCAAAAGAAAAAGAAA 58.305 29.630 0.00 0.00 0.00 2.52
6202 9465 7.095899 GCAAGGCATAAGACTCAAAAGAAAAAG 60.096 37.037 0.00 0.00 27.72 2.27
6207 9470 4.397420 TGCAAGGCATAAGACTCAAAAGA 58.603 39.130 0.00 0.00 31.71 2.52
6208 9471 4.771590 TGCAAGGCATAAGACTCAAAAG 57.228 40.909 0.00 0.00 31.71 2.27
6235 9498 1.271934 TGCAATGAAAACATCACCCCG 59.728 47.619 0.00 0.00 41.93 5.73
6237 9500 3.125658 GCAATGCAATGAAAACATCACCC 59.874 43.478 5.79 0.00 41.93 4.61
6258 9521 2.028748 AGAACTTGTTCCCATGCAATGC 60.029 45.455 9.58 0.00 44.97 3.56
6259 9522 3.256383 TGAGAACTTGTTCCCATGCAATG 59.744 43.478 9.58 0.00 46.21 2.82
6260 9523 3.499338 TGAGAACTTGTTCCCATGCAAT 58.501 40.909 9.58 0.00 0.00 3.56
6261 9524 2.942804 TGAGAACTTGTTCCCATGCAA 58.057 42.857 9.58 0.00 0.00 4.08
6263 9526 2.096496 CGATGAGAACTTGTTCCCATGC 59.904 50.000 13.75 6.40 0.00 4.06
6264 9527 2.096496 GCGATGAGAACTTGTTCCCATG 59.904 50.000 13.75 8.39 0.00 3.66
6265 9528 2.290260 TGCGATGAGAACTTGTTCCCAT 60.290 45.455 9.67 9.67 0.00 4.00
6266 9529 1.071542 TGCGATGAGAACTTGTTCCCA 59.928 47.619 9.58 5.14 0.00 4.37
6267 9530 1.464997 GTGCGATGAGAACTTGTTCCC 59.535 52.381 9.58 0.00 0.00 3.97
6268 9531 2.143122 TGTGCGATGAGAACTTGTTCC 58.857 47.619 9.58 3.23 0.00 3.62
6270 9533 3.627577 AGTTTGTGCGATGAGAACTTGTT 59.372 39.130 0.00 0.00 0.00 2.83
6271 9534 3.206150 AGTTTGTGCGATGAGAACTTGT 58.794 40.909 0.00 0.00 0.00 3.16
6272 9535 3.885484 AGTTTGTGCGATGAGAACTTG 57.115 42.857 0.00 0.00 0.00 3.16
6275 9539 2.310577 GCAAGTTTGTGCGATGAGAAC 58.689 47.619 0.00 0.00 34.21 3.01
6291 9555 2.545526 ACGTTGATGTTGAGTGAGCAAG 59.454 45.455 0.00 0.00 0.00 4.01
6358 11363 3.782889 AACAAACTGAGCTGACCAAAC 57.217 42.857 0.00 0.00 0.00 2.93
6447 12293 4.099881 AGGTATTATGGTTTACGAAGCCGA 59.900 41.667 0.00 0.00 39.50 5.54
6522 13680 2.290134 ACGAGGGCCTCCTTAGAAAAAC 60.290 50.000 27.36 0.00 45.05 2.43
6528 13686 2.290071 TGAAAAACGAGGGCCTCCTTAG 60.290 50.000 27.36 15.69 45.05 2.18
6532 13690 0.596577 GTTGAAAAACGAGGGCCTCC 59.403 55.000 27.36 12.77 0.00 4.30
6533 13691 0.596577 GGTTGAAAAACGAGGGCCTC 59.403 55.000 24.06 24.06 0.00 4.70
6535 13693 1.663739 GGGTTGAAAAACGAGGGCC 59.336 57.895 0.00 0.00 30.87 5.80
6536 13694 1.110518 TGGGGTTGAAAAACGAGGGC 61.111 55.000 0.00 0.00 30.87 5.19
6538 13696 0.309612 CGTGGGGTTGAAAAACGAGG 59.690 55.000 0.00 0.00 30.87 4.63
6539 13697 1.018910 ACGTGGGGTTGAAAAACGAG 58.981 50.000 0.00 0.00 37.66 4.18
6540 13698 0.733729 CACGTGGGGTTGAAAAACGA 59.266 50.000 7.95 0.00 37.66 3.85
6541 13699 0.868177 GCACGTGGGGTTGAAAAACG 60.868 55.000 18.88 0.00 40.00 3.60
6542 13700 0.173708 TGCACGTGGGGTTGAAAAAC 59.826 50.000 18.88 0.00 0.00 2.43
6543 13701 0.173708 GTGCACGTGGGGTTGAAAAA 59.826 50.000 18.88 0.00 0.00 1.94
6544 13702 0.965866 TGTGCACGTGGGGTTGAAAA 60.966 50.000 18.88 0.00 0.00 2.29
6545 13703 1.378646 TGTGCACGTGGGGTTGAAA 60.379 52.632 18.88 0.00 0.00 2.69
6588 13835 2.510691 GGGTATCCACACGGCGTG 60.511 66.667 35.89 35.89 45.92 5.34
6609 13856 4.984194 TGGCATATCCACTGGCAC 57.016 55.556 0.00 0.00 43.37 5.01
6610 13857 0.747644 CGTTGGCATATCCACTGGCA 60.748 55.000 0.00 0.00 46.55 4.92
6611 13858 0.463654 TCGTTGGCATATCCACTGGC 60.464 55.000 0.00 0.00 46.55 4.85
6612 13859 1.134401 AGTCGTTGGCATATCCACTGG 60.134 52.381 0.00 0.00 46.55 4.00
6613 13860 2.205074 GAGTCGTTGGCATATCCACTG 58.795 52.381 0.00 0.00 46.55 3.66
6614 13861 1.139058 GGAGTCGTTGGCATATCCACT 59.861 52.381 0.00 0.00 46.55 4.00
6615 13862 1.134521 TGGAGTCGTTGGCATATCCAC 60.135 52.381 0.00 0.00 46.55 4.02
6656 13903 1.066587 CGGCAGATTCTCCTCCGAC 59.933 63.158 11.16 0.00 42.43 4.79
6691 13938 1.376037 GCTTGGTCCCTTCTCACCG 60.376 63.158 0.00 0.00 35.15 4.94
6701 13948 2.514824 GCGATCCAGGCTTGGTCC 60.515 66.667 15.41 6.94 45.26 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.