Multiple sequence alignment - TraesCS6D01G160500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G160500 chr6D 100.000 3693 0 0 1 3693 138897579 138901271 0.000000e+00 6820.0
1 TraesCS6D01G160500 chr6A 90.318 1952 129 22 902 2833 181512164 181514075 0.000000e+00 2503.0
2 TraesCS6D01G160500 chr6A 93.635 817 38 5 1 814 181511191 181511996 0.000000e+00 1208.0
3 TraesCS6D01G160500 chr6A 87.282 401 38 7 2954 3350 181521341 181521732 2.620000e-121 446.0
4 TraesCS6D01G160500 chr6B 91.187 1407 67 24 1516 2908 238160807 238162170 0.000000e+00 1858.0
5 TraesCS6D01G160500 chr6B 94.430 395 20 2 422 814 238157737 238158131 1.130000e-169 606.0
6 TraesCS6D01G160500 chr6B 95.965 347 13 1 78 423 238157270 238157616 2.490000e-156 562.0
7 TraesCS6D01G160500 chr6B 88.011 367 29 13 2991 3346 238162381 238162743 1.590000e-113 420.0
8 TraesCS6D01G160500 chr6B 94.882 254 9 2 1278 1530 238159117 238159367 9.610000e-106 394.0
9 TraesCS6D01G160500 chr6B 85.437 103 4 2 1 103 238157168 238157259 3.040000e-16 97.1
10 TraesCS6D01G160500 chr1D 80.982 163 14 11 3349 3501 285439494 285439649 3.010000e-21 113.0
11 TraesCS6D01G160500 chr2B 85.321 109 10 4 3349 3457 301663306 301663408 1.400000e-19 108.0
12 TraesCS6D01G160500 chr7D 83.333 120 13 4 3348 3467 39957398 39957286 1.810000e-18 104.0
13 TraesCS6D01G160500 chr7D 84.404 109 12 2 3358 3466 435259043 435259146 6.520000e-18 102.0
14 TraesCS6D01G160500 chr5A 82.031 128 17 5 3348 3475 563554044 563554165 1.810000e-18 104.0
15 TraesCS6D01G160500 chr5A 94.286 35 1 1 3538 3571 428992265 428992299 7.000000e-03 52.8
16 TraesCS6D01G160500 chr3B 75.089 281 39 18 3358 3626 350130333 350130072 6.520000e-18 102.0
17 TraesCS6D01G160500 chr7B 82.353 119 15 3 3349 3467 705329055 705329167 8.440000e-17 99.0
18 TraesCS6D01G160500 chr7B 90.385 52 5 0 3569 3620 267238097 267238148 6.620000e-08 69.4
19 TraesCS6D01G160500 chr2D 82.203 118 14 5 3350 3467 541070652 541070542 1.090000e-15 95.3
20 TraesCS6D01G160500 chr2A 73.883 291 38 21 3350 3624 96151419 96151151 8.500000e-12 82.4
21 TraesCS6D01G160500 chr7A 91.379 58 5 0 3563 3620 167656754 167656811 3.060000e-11 80.5
22 TraesCS6D01G160500 chr1A 78.676 136 15 8 3372 3497 84021129 84021260 1.100000e-10 78.7
23 TraesCS6D01G160500 chr4A 100.000 29 0 0 3537 3565 682740706 682740678 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G160500 chr6D 138897579 138901271 3692 False 6820.000000 6820 100.0000 1 3693 1 chr6D.!!$F1 3692
1 TraesCS6D01G160500 chr6A 181511191 181514075 2884 False 1855.500000 2503 91.9765 1 2833 2 chr6A.!!$F2 2832
2 TraesCS6D01G160500 chr6B 238157168 238162743 5575 False 656.183333 1858 91.6520 1 3346 6 chr6B.!!$F1 3345

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1371 0.106894 CCAAGCCCGATTCCTACTCC 59.893 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2840 5082 0.518636 CACGACTTGGCCATTCAGTG 59.481 55.0 13.34 14.05 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.271828 GACATTGTTGTGGATATATCATGTACA 57.728 33.333 14.60 0.00 35.79 2.90
41 42 9.625747 ACATTGTTGTGGATATATCATGTACAA 57.374 29.630 14.60 16.36 33.85 2.41
44 45 9.844257 TTGTTGTGGATATATCATGTACAATCA 57.156 29.630 14.60 14.18 0.00 2.57
61 62 4.398988 ACAATCATGTACATTTGCACCGAT 59.601 37.500 16.68 8.07 38.24 4.18
97 133 1.464997 GAAAAAGGCGAACATCGAGCT 59.535 47.619 3.61 0.00 43.74 4.09
168 204 3.532232 AGTAGGGGTCAGGATCTTCTACA 59.468 47.826 12.44 0.00 0.00 2.74
296 332 4.959839 ACCACACTTCACACCCTTAATTTT 59.040 37.500 0.00 0.00 0.00 1.82
297 333 5.163457 ACCACACTTCACACCCTTAATTTTG 60.163 40.000 0.00 0.00 0.00 2.44
413 450 5.800296 ACATAATGCCAAAAAGTTTACCCC 58.200 37.500 0.00 0.00 0.00 4.95
549 708 3.821033 AGTTTGTGATGTGGCCTCTAAAC 59.179 43.478 3.32 9.50 0.00 2.01
558 717 2.083774 TGGCCTCTAAACAGCAATTCG 58.916 47.619 3.32 0.00 0.00 3.34
773 935 8.900511 ACAAATCTCATGTTATGAATCAAACG 57.099 30.769 0.00 0.00 39.11 3.60
799 961 9.635404 GACATCTCTATAGCCTATAGGTATTGT 57.365 37.037 20.10 14.50 39.80 2.71
825 1192 7.781219 TCATACATGTCATCTGATTTCCCAAAT 59.219 33.333 0.00 0.00 0.00 2.32
884 1278 1.230074 TATTGGGCCCCATCATGACA 58.770 50.000 22.27 0.00 31.53 3.58
918 1329 2.874701 GCAAACAGAGAAGTTCTCAGCA 59.125 45.455 29.85 0.00 45.73 4.41
919 1330 3.059051 GCAAACAGAGAAGTTCTCAGCAG 60.059 47.826 29.85 19.58 45.73 4.24
960 1371 0.106894 CCAAGCCCGATTCCTACTCC 59.893 60.000 0.00 0.00 0.00 3.85
961 1372 0.249489 CAAGCCCGATTCCTACTCCG 60.249 60.000 0.00 0.00 0.00 4.63
962 1373 0.396695 AAGCCCGATTCCTACTCCGA 60.397 55.000 0.00 0.00 0.00 4.55
963 1374 0.824182 AGCCCGATTCCTACTCCGAG 60.824 60.000 0.00 0.00 0.00 4.63
964 1375 0.822532 GCCCGATTCCTACTCCGAGA 60.823 60.000 1.33 0.00 0.00 4.04
965 1376 0.953003 CCCGATTCCTACTCCGAGAC 59.047 60.000 1.33 0.00 0.00 3.36
966 1377 1.676746 CCGATTCCTACTCCGAGACA 58.323 55.000 1.33 0.00 0.00 3.41
967 1378 1.604755 CCGATTCCTACTCCGAGACAG 59.395 57.143 1.33 0.00 0.00 3.51
968 1379 1.604755 CGATTCCTACTCCGAGACAGG 59.395 57.143 1.33 8.27 0.00 4.00
969 1380 2.657143 GATTCCTACTCCGAGACAGGT 58.343 52.381 15.87 3.46 0.00 4.00
970 1381 1.835494 TTCCTACTCCGAGACAGGTG 58.165 55.000 15.87 0.00 0.00 4.00
971 1382 0.697079 TCCTACTCCGAGACAGGTGT 59.303 55.000 15.87 0.57 40.60 4.16
972 1383 1.911357 TCCTACTCCGAGACAGGTGTA 59.089 52.381 15.87 1.58 38.71 2.90
973 1384 2.015587 CCTACTCCGAGACAGGTGTAC 58.984 57.143 1.33 0.00 38.71 2.90
1174 1591 0.973632 TCTCCAAGCTTTAGACGGCA 59.026 50.000 0.00 0.00 0.00 5.69
1188 1605 4.002797 GGCAAATCACGGCCTTCT 57.997 55.556 0.00 0.00 46.74 2.85
1222 1639 0.041839 CTCAGCTGTCGTGTGCAAAC 60.042 55.000 14.67 0.00 0.00 2.93
1400 2177 6.443849 TGTCTAGGTATTTTCTGGATCTGGTT 59.556 38.462 0.00 0.00 0.00 3.67
1452 2229 1.094785 ATTTGGTTTCCGATGCCTCG 58.905 50.000 4.21 4.21 44.62 4.63
1469 2246 1.542915 CTCGGTTCGAAGGACTGGTAA 59.457 52.381 0.00 0.00 34.74 2.85
1503 2280 5.095145 AGCAATCACTGATCATGTAGTGT 57.905 39.130 19.34 9.93 43.59 3.55
1511 2288 7.441836 TCACTGATCATGTAGTGTTAAAGTGT 58.558 34.615 19.34 0.00 43.59 3.55
1563 3794 4.209307 TGAATACCTGTCCGTTGCATTA 57.791 40.909 0.00 0.00 0.00 1.90
1610 3841 5.172934 CAATGTGCTTTAGTGCATCCATTT 58.827 37.500 0.00 0.00 45.23 2.32
1668 3900 3.689649 ACTCGGTTGGCTTTATTGTGATC 59.310 43.478 0.00 0.00 0.00 2.92
1677 3909 5.045872 GGCTTTATTGTGATCTGAAATGGC 58.954 41.667 0.00 0.00 0.00 4.40
1678 3910 5.163478 GGCTTTATTGTGATCTGAAATGGCT 60.163 40.000 0.00 0.00 0.00 4.75
1780 4013 3.506844 GGGCCAAAAATGCATCACAATTT 59.493 39.130 4.39 0.00 32.63 1.82
1818 4054 4.692155 TGTAGCTCACAGATGACACATTTG 59.308 41.667 0.00 0.00 31.89 2.32
1836 4072 4.875544 TTTGTATAGGCATTGCTTCGTC 57.124 40.909 8.82 0.00 0.00 4.20
1926 4162 9.780413 GATTTGCTTACTTAATCAAAAGGAGAG 57.220 33.333 2.96 0.00 35.68 3.20
1990 4227 1.147817 AGAGGCCATCCACTTGGTTTT 59.852 47.619 5.01 0.00 39.11 2.43
2040 4277 4.637534 CAGCTTTCCGGTACTGTACTACTA 59.362 45.833 16.79 0.00 0.00 1.82
2323 4561 6.895607 AAAACAAAAATGGTTAACTGTCCG 57.104 33.333 5.42 0.00 0.00 4.79
2331 4569 3.132925 TGGTTAACTGTCCGTTGCTAAC 58.867 45.455 5.42 0.00 37.05 2.34
2479 4717 1.734477 CCAACGCGTGACAGAGGAG 60.734 63.158 14.98 0.00 0.00 3.69
2489 4727 3.119919 CGTGACAGAGGAGTACAGTAACC 60.120 52.174 0.00 0.00 0.00 2.85
2536 4774 3.498777 GGGTCTTTGTAGAACAGCTGAAC 59.501 47.826 23.35 13.49 40.04 3.18
2569 4807 2.195096 CGGTTTGACGAGTACACAACA 58.805 47.619 0.00 0.00 35.47 3.33
2696 4934 1.452110 TGCTCCCACACAATGATTCG 58.548 50.000 0.00 0.00 0.00 3.34
2702 4940 2.009774 CCACACAATGATTCGTCTCCC 58.990 52.381 0.00 0.00 0.00 4.30
2704 4942 3.073678 CACACAATGATTCGTCTCCCAA 58.926 45.455 0.00 0.00 0.00 4.12
2706 4944 2.096496 CACAATGATTCGTCTCCCAAGC 59.904 50.000 0.00 0.00 0.00 4.01
2707 4945 2.290260 ACAATGATTCGTCTCCCAAGCA 60.290 45.455 0.00 0.00 0.00 3.91
2708 4946 2.947652 CAATGATTCGTCTCCCAAGCAT 59.052 45.455 0.00 0.00 29.89 3.79
2709 4947 2.028420 TGATTCGTCTCCCAAGCATG 57.972 50.000 0.00 0.00 0.00 4.06
2710 4948 1.278985 TGATTCGTCTCCCAAGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
2711 4949 2.290260 TGATTCGTCTCCCAAGCATGTT 60.290 45.455 0.00 0.00 0.00 2.71
2712 4950 1.522668 TTCGTCTCCCAAGCATGTTG 58.477 50.000 0.00 0.00 0.00 3.33
2713 4951 0.396435 TCGTCTCCCAAGCATGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
2714 4952 1.621317 TCGTCTCCCAAGCATGTTGTA 59.379 47.619 0.00 0.00 0.00 2.41
2715 4953 2.236146 TCGTCTCCCAAGCATGTTGTAT 59.764 45.455 0.00 0.00 0.00 2.29
2716 4954 3.449377 TCGTCTCCCAAGCATGTTGTATA 59.551 43.478 0.00 0.00 0.00 1.47
2717 4955 4.100963 TCGTCTCCCAAGCATGTTGTATAT 59.899 41.667 0.00 0.00 0.00 0.86
2718 4956 4.449068 CGTCTCCCAAGCATGTTGTATATC 59.551 45.833 0.00 0.00 0.00 1.63
2719 4957 5.368145 GTCTCCCAAGCATGTTGTATATCA 58.632 41.667 0.00 0.00 0.00 2.15
2720 4958 5.237344 GTCTCCCAAGCATGTTGTATATCAC 59.763 44.000 0.00 0.00 0.00 3.06
2721 4959 4.460263 TCCCAAGCATGTTGTATATCACC 58.540 43.478 0.00 0.00 0.00 4.02
2724 4962 4.464008 CAAGCATGTTGTATATCACCCCT 58.536 43.478 0.00 0.00 0.00 4.79
2737 4975 8.398743 TGTATATCACCCCTATCATCTTCTGTA 58.601 37.037 0.00 0.00 0.00 2.74
2738 4976 9.427821 GTATATCACCCCTATCATCTTCTGTAT 57.572 37.037 0.00 0.00 0.00 2.29
2742 4980 6.495181 TCACCCCTATCATCTTCTGTATTCTC 59.505 42.308 0.00 0.00 0.00 2.87
2743 4981 6.496565 CACCCCTATCATCTTCTGTATTCTCT 59.503 42.308 0.00 0.00 0.00 3.10
2771 5013 9.311916 CAATAATTGAGCATATCTCTAGTAGCC 57.688 37.037 0.00 0.00 42.38 3.93
2792 5034 3.120041 CAAACACGTTTGGATGGGAAAC 58.880 45.455 13.66 0.00 44.47 2.78
2793 5035 2.358322 ACACGTTTGGATGGGAAACT 57.642 45.000 0.00 0.00 32.17 2.66
2795 5037 3.822940 ACACGTTTGGATGGGAAACTTA 58.177 40.909 0.00 0.00 32.17 2.24
2803 5045 6.442541 TTGGATGGGAAACTTAACACTCTA 57.557 37.500 0.00 0.00 0.00 2.43
2805 5047 5.546499 TGGATGGGAAACTTAACACTCTAGT 59.454 40.000 0.00 0.00 0.00 2.57
2838 5080 5.060506 TCCACCATTGTTGTACTTGTAGTG 58.939 41.667 0.00 0.00 0.00 2.74
2840 5082 5.049680 CCACCATTGTTGTACTTGTAGTGTC 60.050 44.000 0.00 0.00 0.00 3.67
2845 5095 5.585820 TGTTGTACTTGTAGTGTCACTGA 57.414 39.130 16.03 0.00 0.00 3.41
2850 5100 3.403038 ACTTGTAGTGTCACTGAATGGC 58.597 45.455 16.03 0.16 0.00 4.40
2852 5102 1.696884 TGTAGTGTCACTGAATGGCCA 59.303 47.619 16.03 8.56 28.68 5.36
2856 5106 1.537202 GTGTCACTGAATGGCCAAGTC 59.463 52.381 10.96 11.58 28.68 3.01
2858 5108 0.396435 TCACTGAATGGCCAAGTCGT 59.604 50.000 10.96 10.13 0.00 4.34
2874 5124 1.069668 GTCGTGGTGTTACTTCCAGGT 59.930 52.381 14.80 0.00 39.61 4.00
2881 5131 4.164604 TGGTGTTACTTCCAGGTACTTGTT 59.835 41.667 4.10 0.00 34.60 2.83
2882 5132 4.514066 GGTGTTACTTCCAGGTACTTGTTG 59.486 45.833 4.10 0.00 34.60 3.33
2894 5145 7.837689 TCCAGGTACTTGTTGATACAGTACTAT 59.162 37.037 4.10 0.00 38.08 2.12
2895 5146 8.136165 CCAGGTACTTGTTGATACAGTACTATC 58.864 40.741 4.10 0.00 38.08 2.08
2896 5147 8.904834 CAGGTACTTGTTGATACAGTACTATCT 58.095 37.037 0.00 0.00 38.08 1.98
2897 5148 9.476928 AGGTACTTGTTGATACAGTACTATCTT 57.523 33.333 0.00 0.00 38.08 2.40
2900 5151 8.480643 ACTTGTTGATACAGTACTATCTTTGC 57.519 34.615 0.00 0.00 35.28 3.68
2901 5152 8.314751 ACTTGTTGATACAGTACTATCTTTGCT 58.685 33.333 0.00 0.00 35.28 3.91
2902 5153 9.803315 CTTGTTGATACAGTACTATCTTTGCTA 57.197 33.333 0.00 0.00 35.28 3.49
2914 5288 3.950087 TCTTTGCTATAATGCACAGCG 57.050 42.857 0.00 0.00 43.20 5.18
2915 5289 2.032054 TCTTTGCTATAATGCACAGCGC 59.968 45.455 0.00 0.00 43.20 5.92
2927 5303 1.201965 GCACAGCGCTGTAAGATTGTC 60.202 52.381 40.17 19.12 42.83 3.18
2935 5311 3.421844 GCTGTAAGATTGTCCCCACTTT 58.578 45.455 0.00 0.00 34.07 2.66
2936 5312 3.440522 GCTGTAAGATTGTCCCCACTTTC 59.559 47.826 0.00 0.00 34.07 2.62
2938 5314 2.200373 AAGATTGTCCCCACTTTCCG 57.800 50.000 0.00 0.00 0.00 4.30
2942 5318 0.547075 TTGTCCCCACTTTCCGTTCA 59.453 50.000 0.00 0.00 0.00 3.18
2945 5321 0.608035 TCCCCACTTTCCGTTCATGC 60.608 55.000 0.00 0.00 0.00 4.06
2946 5322 1.595093 CCCCACTTTCCGTTCATGCC 61.595 60.000 0.00 0.00 0.00 4.40
2964 5355 3.608796 TGCCATGAAACGAATGAGATCA 58.391 40.909 0.00 0.00 0.00 2.92
2968 5359 5.616424 GCCATGAAACGAATGAGATCATAGC 60.616 44.000 0.00 0.00 35.10 2.97
2969 5360 5.106791 CCATGAAACGAATGAGATCATAGCC 60.107 44.000 0.00 0.00 35.10 3.93
2972 5363 0.987715 CGAATGAGATCATAGCCGCG 59.012 55.000 0.00 0.00 35.10 6.46
2989 5380 1.647629 CGGAGCTTCATCATGCAGC 59.352 57.895 0.23 0.23 36.89 5.25
2990 5381 1.093496 CGGAGCTTCATCATGCAGCA 61.093 55.000 12.10 0.00 39.10 4.41
2995 5386 2.561419 AGCTTCATCATGCAGCAGTTTT 59.439 40.909 12.10 0.00 39.10 2.43
3000 5391 3.691118 TCATCATGCAGCAGTTTTACCTC 59.309 43.478 0.00 0.00 0.00 3.85
3003 5394 3.503363 TCATGCAGCAGTTTTACCTCAAG 59.497 43.478 0.00 0.00 0.00 3.02
3008 5399 5.534654 TGCAGCAGTTTTACCTCAAGTATTT 59.465 36.000 0.00 0.00 0.00 1.40
3009 5400 5.858581 GCAGCAGTTTTACCTCAAGTATTTG 59.141 40.000 0.00 0.00 35.57 2.32
3010 5401 6.515035 GCAGCAGTTTTACCTCAAGTATTTGT 60.515 38.462 0.00 0.00 35.73 2.83
3011 5402 6.857964 CAGCAGTTTTACCTCAAGTATTTGTG 59.142 38.462 0.00 0.00 35.73 3.33
3012 5403 5.629435 GCAGTTTTACCTCAAGTATTTGTGC 59.371 40.000 0.00 0.00 35.73 4.57
3014 5405 7.199766 CAGTTTTACCTCAAGTATTTGTGCAA 58.800 34.615 0.00 0.00 35.73 4.08
3015 5406 7.867403 CAGTTTTACCTCAAGTATTTGTGCAAT 59.133 33.333 0.00 0.00 35.73 3.56
3016 5407 7.867403 AGTTTTACCTCAAGTATTTGTGCAATG 59.133 33.333 0.00 0.00 35.73 2.82
3017 5408 7.517614 TTTACCTCAAGTATTTGTGCAATGA 57.482 32.000 0.00 0.00 35.73 2.57
3018 5409 7.517614 TTACCTCAAGTATTTGTGCAATGAA 57.482 32.000 0.00 0.00 35.73 2.57
3019 5410 5.772521 ACCTCAAGTATTTGTGCAATGAAC 58.227 37.500 0.00 0.00 35.73 3.18
3020 5411 5.163513 CCTCAAGTATTTGTGCAATGAACC 58.836 41.667 0.00 0.00 35.73 3.62
3021 5412 5.047802 CCTCAAGTATTTGTGCAATGAACCT 60.048 40.000 0.00 0.00 35.73 3.50
3022 5413 5.771469 TCAAGTATTTGTGCAATGAACCTG 58.229 37.500 0.00 0.00 35.73 4.00
3024 5415 2.460757 ATTTGTGCAATGAACCTGCC 57.539 45.000 0.00 0.00 39.13 4.85
3025 5416 1.412079 TTTGTGCAATGAACCTGCCT 58.588 45.000 0.00 0.00 39.13 4.75
3027 5418 0.111061 TGTGCAATGAACCTGCCTCT 59.889 50.000 0.00 0.00 39.13 3.69
3028 5419 0.524862 GTGCAATGAACCTGCCTCTG 59.475 55.000 0.00 0.00 39.13 3.35
3029 5420 1.246056 TGCAATGAACCTGCCTCTGC 61.246 55.000 0.00 0.00 39.13 4.26
3030 5421 1.941999 GCAATGAACCTGCCTCTGCC 61.942 60.000 0.00 0.00 36.33 4.85
3064 5455 1.316651 GCTGGATTGGCATTCTCCTC 58.683 55.000 9.06 0.59 0.00 3.71
3090 5484 5.923665 CACGTTAGTGTTACAAAGATTCCC 58.076 41.667 0.00 0.00 43.15 3.97
3093 5487 2.073816 AGTGTTACAAAGATTCCCGCG 58.926 47.619 0.00 0.00 0.00 6.46
3094 5488 2.070783 GTGTTACAAAGATTCCCGCGA 58.929 47.619 8.23 0.00 0.00 5.87
3105 5499 4.672409 AGATTCCCGCGAATTTTCAATTC 58.328 39.130 8.23 0.00 38.88 2.17
3140 5534 3.056821 TCGTAAGGACTGGTCAATGACAG 60.057 47.826 15.86 12.42 33.68 3.51
3171 5565 1.346068 GTGACAGAGGAGTTGAAGCCT 59.654 52.381 0.00 0.00 37.18 4.58
3191 5588 3.152341 CTCTGCCACTGAATTTCTTGGT 58.848 45.455 15.08 3.21 0.00 3.67
3196 5593 4.072131 GCCACTGAATTTCTTGGTCTGTA 58.928 43.478 15.08 0.00 0.00 2.74
3208 5605 5.120399 TCTTGGTCTGTAACGTTTTCACAT 58.880 37.500 5.91 0.00 0.00 3.21
3248 5646 1.001597 GCCTCTTATCATTGCAGCTGC 60.002 52.381 31.89 31.89 42.50 5.25
3268 5666 2.675032 GCGATCATGGACTTGACTGACA 60.675 50.000 0.00 0.00 0.00 3.58
3285 5686 6.038161 TGACTGACACCAAATTTCTTACACAG 59.962 38.462 0.00 0.00 0.00 3.66
3351 5752 3.676291 TTGGTACCCAAACCGTAGTAC 57.324 47.619 10.07 0.00 40.92 2.73
3352 5753 2.888212 TGGTACCCAAACCGTAGTACT 58.112 47.619 10.07 0.00 42.91 2.73
3353 5754 2.825532 TGGTACCCAAACCGTAGTACTC 59.174 50.000 10.07 0.00 42.91 2.59
3354 5755 2.825532 GGTACCCAAACCGTAGTACTCA 59.174 50.000 0.00 0.00 36.25 3.41
3355 5756 3.367395 GGTACCCAAACCGTAGTACTCAC 60.367 52.174 0.00 0.00 36.25 3.51
3356 5757 2.601905 ACCCAAACCGTAGTACTCACT 58.398 47.619 0.00 0.00 38.91 3.41
3357 5758 2.560105 ACCCAAACCGTAGTACTCACTC 59.440 50.000 0.00 0.00 36.14 3.51
3358 5759 2.824341 CCCAAACCGTAGTACTCACTCT 59.176 50.000 0.00 0.00 36.14 3.24
3359 5760 3.119566 CCCAAACCGTAGTACTCACTCTC 60.120 52.174 0.00 0.00 36.14 3.20
3360 5761 3.119566 CCAAACCGTAGTACTCACTCTCC 60.120 52.174 0.00 0.00 36.14 3.71
3361 5762 2.021355 ACCGTAGTACTCACTCTCCG 57.979 55.000 0.00 0.00 36.14 4.63
3362 5763 1.297664 CCGTAGTACTCACTCTCCGG 58.702 60.000 0.00 0.00 36.14 5.14
3363 5764 1.406614 CCGTAGTACTCACTCTCCGGT 60.407 57.143 0.00 0.00 36.58 5.28
3364 5765 1.932511 CGTAGTACTCACTCTCCGGTC 59.067 57.143 0.00 0.00 36.14 4.79
3365 5766 2.287769 GTAGTACTCACTCTCCGGTCC 58.712 57.143 0.00 0.00 36.14 4.46
3366 5767 0.993470 AGTACTCACTCTCCGGTCCT 59.007 55.000 0.00 0.00 0.00 3.85
3367 5768 1.355043 AGTACTCACTCTCCGGTCCTT 59.645 52.381 0.00 0.00 0.00 3.36
3368 5769 2.169330 GTACTCACTCTCCGGTCCTTT 58.831 52.381 0.00 0.00 0.00 3.11
3369 5770 1.718280 ACTCACTCTCCGGTCCTTTT 58.282 50.000 0.00 0.00 0.00 2.27
3370 5771 2.047830 ACTCACTCTCCGGTCCTTTTT 58.952 47.619 0.00 0.00 0.00 1.94
3371 5772 3.236896 ACTCACTCTCCGGTCCTTTTTA 58.763 45.455 0.00 0.00 0.00 1.52
3372 5773 3.258622 ACTCACTCTCCGGTCCTTTTTAG 59.741 47.826 0.00 0.00 0.00 1.85
3373 5774 3.236896 TCACTCTCCGGTCCTTTTTAGT 58.763 45.455 0.00 0.00 0.00 2.24
3374 5775 3.257624 TCACTCTCCGGTCCTTTTTAGTC 59.742 47.826 0.00 0.00 0.00 2.59
3375 5776 3.258622 CACTCTCCGGTCCTTTTTAGTCT 59.741 47.826 0.00 0.00 0.00 3.24
3376 5777 3.258622 ACTCTCCGGTCCTTTTTAGTCTG 59.741 47.826 0.00 0.00 0.00 3.51
3377 5778 2.028385 TCTCCGGTCCTTTTTAGTCTGC 60.028 50.000 0.00 0.00 0.00 4.26
3378 5779 1.695242 TCCGGTCCTTTTTAGTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3379 5780 1.804748 CCGGTCCTTTTTAGTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
3380 5781 2.489971 CGGTCCTTTTTAGTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
3381 5782 3.074412 CGGTCCTTTTTAGTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
3382 5783 4.250464 CGGTCCTTTTTAGTCTGCACATA 58.750 43.478 0.00 0.00 0.00 2.29
3383 5784 4.693566 CGGTCCTTTTTAGTCTGCACATAA 59.306 41.667 0.00 0.00 0.00 1.90
3384 5785 5.163854 CGGTCCTTTTTAGTCTGCACATAAG 60.164 44.000 0.00 0.00 0.00 1.73
3385 5786 5.705905 GGTCCTTTTTAGTCTGCACATAAGT 59.294 40.000 0.00 0.00 0.00 2.24
3386 5787 6.206829 GGTCCTTTTTAGTCTGCACATAAGTT 59.793 38.462 0.00 0.00 0.00 2.66
3387 5788 7.255486 GGTCCTTTTTAGTCTGCACATAAGTTT 60.255 37.037 0.00 0.00 0.00 2.66
3388 5789 8.135529 GTCCTTTTTAGTCTGCACATAAGTTTT 58.864 33.333 0.00 0.00 0.00 2.43
3389 5790 8.349983 TCCTTTTTAGTCTGCACATAAGTTTTC 58.650 33.333 0.00 0.00 0.00 2.29
3390 5791 8.352942 CCTTTTTAGTCTGCACATAAGTTTTCT 58.647 33.333 0.00 0.00 0.00 2.52
3391 5792 9.736023 CTTTTTAGTCTGCACATAAGTTTTCTT 57.264 29.630 0.00 0.00 43.24 2.52
3392 5793 9.730420 TTTTTAGTCTGCACATAAGTTTTCTTC 57.270 29.630 0.00 0.00 40.91 2.87
3393 5794 8.445275 TTTAGTCTGCACATAAGTTTTCTTCA 57.555 30.769 0.00 0.00 40.91 3.02
3394 5795 6.942532 AGTCTGCACATAAGTTTTCTTCAA 57.057 33.333 0.00 0.00 40.91 2.69
3395 5796 7.333528 AGTCTGCACATAAGTTTTCTTCAAA 57.666 32.000 0.00 0.00 40.91 2.69
3396 5797 7.420800 AGTCTGCACATAAGTTTTCTTCAAAG 58.579 34.615 0.00 0.00 40.91 2.77
3397 5798 7.067494 AGTCTGCACATAAGTTTTCTTCAAAGT 59.933 33.333 0.00 0.00 40.91 2.66
3398 5799 7.702348 GTCTGCACATAAGTTTTCTTCAAAGTT 59.298 33.333 0.00 0.00 40.52 2.66
3399 5800 8.898761 TCTGCACATAAGTTTTCTTCAAAGTTA 58.101 29.630 0.00 0.00 42.16 2.24
3400 5801 9.515020 CTGCACATAAGTTTTCTTCAAAGTTAA 57.485 29.630 0.00 0.00 41.57 2.01
3401 5802 9.862371 TGCACATAAGTTTTCTTCAAAGTTAAA 57.138 25.926 0.00 0.00 41.57 1.52
3457 5858 8.981647 AGAAACAAGTATCAACATTCAAAATGC 58.018 29.630 0.00 0.00 0.00 3.56
3458 5859 7.656707 AACAAGTATCAACATTCAAAATGCC 57.343 32.000 0.00 0.00 0.00 4.40
3459 5860 6.757237 ACAAGTATCAACATTCAAAATGCCA 58.243 32.000 0.00 0.00 0.00 4.92
3460 5861 7.215789 ACAAGTATCAACATTCAAAATGCCAA 58.784 30.769 0.00 0.00 0.00 4.52
3461 5862 7.714377 ACAAGTATCAACATTCAAAATGCCAAA 59.286 29.630 0.00 0.00 0.00 3.28
3462 5863 8.723311 CAAGTATCAACATTCAAAATGCCAAAT 58.277 29.630 0.00 0.00 0.00 2.32
3463 5864 8.483307 AGTATCAACATTCAAAATGCCAAATC 57.517 30.769 0.00 0.00 0.00 2.17
3464 5865 8.095792 AGTATCAACATTCAAAATGCCAAATCA 58.904 29.630 0.00 0.00 0.00 2.57
3465 5866 7.747155 ATCAACATTCAAAATGCCAAATCAA 57.253 28.000 0.00 0.00 0.00 2.57
3466 5867 7.747155 TCAACATTCAAAATGCCAAATCAAT 57.253 28.000 0.00 0.00 0.00 2.57
3467 5868 7.585867 TCAACATTCAAAATGCCAAATCAATG 58.414 30.769 0.00 0.00 0.00 2.82
3468 5869 7.228906 TCAACATTCAAAATGCCAAATCAATGT 59.771 29.630 0.00 0.00 35.29 2.71
3469 5870 7.513371 ACATTCAAAATGCCAAATCAATGTT 57.487 28.000 0.00 0.00 30.81 2.71
3470 5871 7.942990 ACATTCAAAATGCCAAATCAATGTTT 58.057 26.923 0.00 0.00 30.81 2.83
3471 5872 8.414778 ACATTCAAAATGCCAAATCAATGTTTT 58.585 25.926 0.00 0.00 30.81 2.43
3472 5873 9.894783 CATTCAAAATGCCAAATCAATGTTTTA 57.105 25.926 0.00 0.00 0.00 1.52
3474 5875 9.894783 TTCAAAATGCCAAATCAATGTTTTATG 57.105 25.926 0.00 0.00 0.00 1.90
3475 5876 9.281371 TCAAAATGCCAAATCAATGTTTTATGA 57.719 25.926 0.00 0.00 0.00 2.15
3476 5877 9.894783 CAAAATGCCAAATCAATGTTTTATGAA 57.105 25.926 0.00 0.00 0.00 2.57
3554 5955 5.391060 AAAATTCTAGAATACGCACGAGC 57.609 39.130 18.23 0.00 37.42 5.03
3555 5956 3.710326 ATTCTAGAATACGCACGAGCA 57.290 42.857 16.50 0.00 42.27 4.26
3556 5957 3.710326 TTCTAGAATACGCACGAGCAT 57.290 42.857 5.50 0.00 42.27 3.79
3557 5958 3.000082 TCTAGAATACGCACGAGCATG 58.000 47.619 5.50 0.00 42.27 4.06
3558 5959 1.453524 CTAGAATACGCACGAGCATGC 59.546 52.381 10.51 10.51 42.27 4.06
3564 5965 3.704843 GCACGAGCATGCGTATCA 58.295 55.556 13.01 0.00 43.59 2.15
3565 5966 2.005995 GCACGAGCATGCGTATCAA 58.994 52.632 13.01 0.00 43.59 2.57
3566 5967 0.315382 GCACGAGCATGCGTATCAAC 60.315 55.000 13.01 0.00 43.59 3.18
3567 5968 0.998669 CACGAGCATGCGTATCAACA 59.001 50.000 13.01 0.00 43.59 3.33
3568 5969 1.594397 CACGAGCATGCGTATCAACAT 59.406 47.619 13.01 0.00 43.59 2.71
3569 5970 2.030823 CACGAGCATGCGTATCAACATT 59.969 45.455 13.01 0.00 43.59 2.71
3570 5971 2.677836 ACGAGCATGCGTATCAACATTT 59.322 40.909 13.01 0.00 43.61 2.32
3571 5972 3.031126 CGAGCATGCGTATCAACATTTG 58.969 45.455 13.01 0.00 0.00 2.32
3572 5973 3.242381 CGAGCATGCGTATCAACATTTGA 60.242 43.478 13.01 0.00 45.01 2.69
3573 5974 4.019919 AGCATGCGTATCAACATTTGAC 57.980 40.909 13.01 0.00 43.48 3.18
3574 5975 3.691118 AGCATGCGTATCAACATTTGACT 59.309 39.130 13.01 0.00 43.48 3.41
3575 5976 4.156556 AGCATGCGTATCAACATTTGACTT 59.843 37.500 13.01 0.00 43.48 3.01
3576 5977 4.263677 GCATGCGTATCAACATTTGACTTG 59.736 41.667 0.00 0.00 43.48 3.16
3577 5978 5.630061 CATGCGTATCAACATTTGACTTGA 58.370 37.500 0.00 0.00 43.48 3.02
3578 5979 5.029650 TGCGTATCAACATTTGACTTGAC 57.970 39.130 0.00 0.00 43.48 3.18
3579 5980 4.513318 TGCGTATCAACATTTGACTTGACA 59.487 37.500 0.00 0.00 43.48 3.58
3580 5981 4.846137 GCGTATCAACATTTGACTTGACAC 59.154 41.667 0.00 0.00 43.48 3.67
3581 5982 5.559991 GCGTATCAACATTTGACTTGACACA 60.560 40.000 0.00 0.00 43.48 3.72
3582 5983 6.426327 CGTATCAACATTTGACTTGACACAA 58.574 36.000 0.00 0.00 43.48 3.33
3583 5984 6.909895 CGTATCAACATTTGACTTGACACAAA 59.090 34.615 0.00 0.00 43.48 2.83
3584 5985 7.591057 CGTATCAACATTTGACTTGACACAAAT 59.409 33.333 0.00 0.00 43.48 2.32
3585 5986 7.935338 ATCAACATTTGACTTGACACAAATC 57.065 32.000 0.00 0.00 43.48 2.17
3586 5987 7.099266 TCAACATTTGACTTGACACAAATCT 57.901 32.000 0.00 0.00 42.35 2.40
3587 5988 8.219546 TCAACATTTGACTTGACACAAATCTA 57.780 30.769 0.00 0.00 42.35 1.98
3588 5989 8.681806 TCAACATTTGACTTGACACAAATCTAA 58.318 29.630 0.00 0.00 42.35 2.10
3589 5990 9.467258 CAACATTTGACTTGACACAAATCTAAT 57.533 29.630 0.00 0.00 42.35 1.73
3594 5995 7.346208 TGACTTGACACAAATCTAATACACG 57.654 36.000 0.00 0.00 0.00 4.49
3595 5996 6.367695 TGACTTGACACAAATCTAATACACGG 59.632 38.462 0.00 0.00 0.00 4.94
3596 5997 6.228258 ACTTGACACAAATCTAATACACGGT 58.772 36.000 0.00 0.00 0.00 4.83
3597 5998 6.147164 ACTTGACACAAATCTAATACACGGTG 59.853 38.462 6.58 6.58 0.00 4.94
3598 5999 5.543714 TGACACAAATCTAATACACGGTGT 58.456 37.500 18.89 18.89 40.57 4.16
3599 6000 5.407084 TGACACAAATCTAATACACGGTGTG 59.593 40.000 23.36 7.00 38.25 3.82
3600 6001 5.543714 ACACAAATCTAATACACGGTGTGA 58.456 37.500 23.36 12.27 38.72 3.58
3601 6002 5.992829 ACACAAATCTAATACACGGTGTGAA 59.007 36.000 23.36 5.05 38.72 3.18
3602 6003 6.483974 ACACAAATCTAATACACGGTGTGAAA 59.516 34.615 23.36 4.26 38.72 2.69
3603 6004 7.012515 ACACAAATCTAATACACGGTGTGAAAA 59.987 33.333 23.36 3.87 38.72 2.29
3604 6005 7.533900 CACAAATCTAATACACGGTGTGAAAAG 59.466 37.037 23.36 14.31 37.84 2.27
3605 6006 6.737254 AATCTAATACACGGTGTGAAAAGG 57.263 37.500 23.36 8.77 36.96 3.11
3606 6007 5.471556 TCTAATACACGGTGTGAAAAGGA 57.528 39.130 23.36 10.73 36.96 3.36
3607 6008 5.232463 TCTAATACACGGTGTGAAAAGGAC 58.768 41.667 23.36 0.00 36.96 3.85
3608 6009 2.243602 TACACGGTGTGAAAAGGACC 57.756 50.000 23.36 0.00 36.96 4.46
3609 6010 0.253610 ACACGGTGTGAAAAGGACCA 59.746 50.000 13.92 0.00 36.96 4.02
3610 6011 0.944386 CACGGTGTGAAAAGGACCAG 59.056 55.000 0.00 0.00 35.23 4.00
3611 6012 0.834612 ACGGTGTGAAAAGGACCAGA 59.165 50.000 0.00 0.00 0.00 3.86
3612 6013 1.202651 ACGGTGTGAAAAGGACCAGAG 60.203 52.381 0.00 0.00 0.00 3.35
3613 6014 1.878102 CGGTGTGAAAAGGACCAGAGG 60.878 57.143 0.00 0.00 0.00 3.69
3614 6015 1.545651 GGTGTGAAAAGGACCAGAGGG 60.546 57.143 0.00 0.00 41.29 4.30
3615 6016 1.420138 GTGTGAAAAGGACCAGAGGGA 59.580 52.381 0.00 0.00 38.05 4.20
3616 6017 1.699634 TGTGAAAAGGACCAGAGGGAG 59.300 52.381 0.00 0.00 38.05 4.30
3617 6018 1.700186 GTGAAAAGGACCAGAGGGAGT 59.300 52.381 0.00 0.00 38.05 3.85
3618 6019 2.904434 GTGAAAAGGACCAGAGGGAGTA 59.096 50.000 0.00 0.00 38.05 2.59
3619 6020 2.904434 TGAAAAGGACCAGAGGGAGTAC 59.096 50.000 0.00 0.00 38.05 2.73
3620 6021 3.174779 GAAAAGGACCAGAGGGAGTACT 58.825 50.000 0.00 0.00 38.05 2.73
3621 6022 4.202749 TGAAAAGGACCAGAGGGAGTACTA 60.203 45.833 0.00 0.00 38.05 1.82
3622 6023 4.628661 AAAGGACCAGAGGGAGTACTAT 57.371 45.455 0.00 0.00 38.05 2.12
3623 6024 5.745988 AAAGGACCAGAGGGAGTACTATA 57.254 43.478 0.00 0.00 38.05 1.31
3624 6025 5.952161 AAGGACCAGAGGGAGTACTATAT 57.048 43.478 0.00 0.00 38.05 0.86
3625 6026 5.263872 AGGACCAGAGGGAGTACTATATG 57.736 47.826 0.00 0.00 38.05 1.78
3626 6027 4.670727 AGGACCAGAGGGAGTACTATATGT 59.329 45.833 0.00 0.00 38.05 2.29
3627 6028 5.011586 GGACCAGAGGGAGTACTATATGTC 58.988 50.000 0.00 0.00 38.05 3.06
3628 6029 5.222171 GGACCAGAGGGAGTACTATATGTCT 60.222 48.000 0.00 0.00 38.05 3.41
3629 6030 5.636123 ACCAGAGGGAGTACTATATGTCTG 58.364 45.833 0.00 4.48 38.05 3.51
3630 6031 5.134679 ACCAGAGGGAGTACTATATGTCTGT 59.865 44.000 14.38 5.32 38.05 3.41
3631 6032 6.332103 ACCAGAGGGAGTACTATATGTCTGTA 59.668 42.308 14.38 0.00 38.05 2.74
3632 6033 6.882140 CCAGAGGGAGTACTATATGTCTGTAG 59.118 46.154 14.38 0.00 35.59 2.74
3633 6034 7.256727 CCAGAGGGAGTACTATATGTCTGTAGA 60.257 44.444 14.38 0.00 35.59 2.59
3634 6035 8.325787 CAGAGGGAGTACTATATGTCTGTAGAT 58.674 40.741 0.00 0.00 0.00 1.98
3635 6036 8.325787 AGAGGGAGTACTATATGTCTGTAGATG 58.674 40.741 0.00 0.00 0.00 2.90
3636 6037 6.887545 AGGGAGTACTATATGTCTGTAGATGC 59.112 42.308 0.00 0.00 0.00 3.91
3637 6038 6.659668 GGGAGTACTATATGTCTGTAGATGCA 59.340 42.308 0.00 0.00 0.00 3.96
3638 6039 7.148154 GGGAGTACTATATGTCTGTAGATGCAG 60.148 44.444 0.00 0.00 37.81 4.41
3639 6040 7.151999 AGTACTATATGTCTGTAGATGCAGC 57.848 40.000 0.00 0.00 36.49 5.25
3640 6041 6.945435 AGTACTATATGTCTGTAGATGCAGCT 59.055 38.462 10.44 10.44 36.49 4.24
3641 6042 6.662865 ACTATATGTCTGTAGATGCAGCTT 57.337 37.500 11.02 0.00 36.49 3.74
3642 6043 7.060383 ACTATATGTCTGTAGATGCAGCTTT 57.940 36.000 11.02 0.00 36.49 3.51
3643 6044 6.927936 ACTATATGTCTGTAGATGCAGCTTTG 59.072 38.462 11.02 0.56 36.49 2.77
3644 6045 3.683365 TGTCTGTAGATGCAGCTTTGA 57.317 42.857 11.02 3.30 36.49 2.69
3645 6046 4.006780 TGTCTGTAGATGCAGCTTTGAA 57.993 40.909 11.02 0.00 36.49 2.69
3646 6047 4.582869 TGTCTGTAGATGCAGCTTTGAAT 58.417 39.130 11.02 0.00 36.49 2.57
3647 6048 5.733676 TGTCTGTAGATGCAGCTTTGAATA 58.266 37.500 11.02 0.00 36.49 1.75
3648 6049 6.172630 TGTCTGTAGATGCAGCTTTGAATAA 58.827 36.000 11.02 0.00 36.49 1.40
3649 6050 6.654582 TGTCTGTAGATGCAGCTTTGAATAAA 59.345 34.615 11.02 0.00 36.49 1.40
3650 6051 7.148356 TGTCTGTAGATGCAGCTTTGAATAAAG 60.148 37.037 11.02 0.00 44.86 1.85
3651 6052 7.065085 GTCTGTAGATGCAGCTTTGAATAAAGA 59.935 37.037 11.02 0.00 43.97 2.52
3652 6053 7.279536 TCTGTAGATGCAGCTTTGAATAAAGAG 59.720 37.037 11.02 0.00 43.97 2.85
3653 6054 5.246145 AGATGCAGCTTTGAATAAAGAGC 57.754 39.130 0.00 7.17 44.87 4.09
3654 6055 4.948621 AGATGCAGCTTTGAATAAAGAGCT 59.051 37.500 0.00 0.00 44.87 4.09
3655 6056 5.418209 AGATGCAGCTTTGAATAAAGAGCTT 59.582 36.000 0.00 10.23 44.87 3.74
3656 6057 5.051891 TGCAGCTTTGAATAAAGAGCTTC 57.948 39.130 14.25 0.00 44.87 3.86
3657 6058 4.520111 TGCAGCTTTGAATAAAGAGCTTCA 59.480 37.500 14.25 0.00 44.87 3.02
3658 6059 5.184479 TGCAGCTTTGAATAAAGAGCTTCAT 59.816 36.000 14.25 0.00 44.87 2.57
3659 6060 6.098017 GCAGCTTTGAATAAAGAGCTTCATT 58.902 36.000 4.10 0.00 44.87 2.57
3660 6061 6.034683 GCAGCTTTGAATAAAGAGCTTCATTG 59.965 38.462 4.10 0.00 44.87 2.82
3661 6062 6.530534 CAGCTTTGAATAAAGAGCTTCATTGG 59.469 38.462 4.10 0.00 44.87 3.16
3662 6063 6.435277 AGCTTTGAATAAAGAGCTTCATTGGA 59.565 34.615 4.10 0.00 44.87 3.53
3663 6064 7.123847 AGCTTTGAATAAAGAGCTTCATTGGAT 59.876 33.333 4.10 0.00 44.87 3.41
3664 6065 8.408601 GCTTTGAATAAAGAGCTTCATTGGATA 58.591 33.333 4.10 0.00 44.87 2.59
3673 6074 8.767478 AAGAGCTTCATTGGATAAAACATTTG 57.233 30.769 0.00 0.00 0.00 2.32
3674 6075 7.325694 AGAGCTTCATTGGATAAAACATTTGG 58.674 34.615 0.00 0.00 0.00 3.28
3675 6076 7.178983 AGAGCTTCATTGGATAAAACATTTGGA 59.821 33.333 0.00 0.00 0.00 3.53
3676 6077 7.678837 AGCTTCATTGGATAAAACATTTGGAA 58.321 30.769 0.00 0.00 0.00 3.53
3677 6078 7.820872 AGCTTCATTGGATAAAACATTTGGAAG 59.179 33.333 0.00 0.00 0.00 3.46
3678 6079 7.064966 GCTTCATTGGATAAAACATTTGGAAGG 59.935 37.037 0.00 0.00 0.00 3.46
3679 6080 7.552050 TCATTGGATAAAACATTTGGAAGGT 57.448 32.000 0.00 0.00 0.00 3.50
3680 6081 7.385267 TCATTGGATAAAACATTTGGAAGGTG 58.615 34.615 0.00 0.00 0.00 4.00
3681 6082 6.985653 TTGGATAAAACATTTGGAAGGTGA 57.014 33.333 0.00 0.00 0.00 4.02
3682 6083 7.552050 TTGGATAAAACATTTGGAAGGTGAT 57.448 32.000 0.00 0.00 0.00 3.06
3683 6084 6.934056 TGGATAAAACATTTGGAAGGTGATG 58.066 36.000 0.00 0.00 0.00 3.07
3684 6085 5.812127 GGATAAAACATTTGGAAGGTGATGC 59.188 40.000 0.00 0.00 0.00 3.91
3685 6086 4.686191 AAAACATTTGGAAGGTGATGCA 57.314 36.364 0.00 0.00 0.00 3.96
3686 6087 3.947910 AACATTTGGAAGGTGATGCAG 57.052 42.857 0.00 0.00 0.00 4.41
3687 6088 3.159213 ACATTTGGAAGGTGATGCAGA 57.841 42.857 0.00 0.00 0.00 4.26
3688 6089 3.499338 ACATTTGGAAGGTGATGCAGAA 58.501 40.909 0.00 0.00 0.00 3.02
3689 6090 3.896888 ACATTTGGAAGGTGATGCAGAAA 59.103 39.130 0.00 0.00 0.00 2.52
3690 6091 4.344679 ACATTTGGAAGGTGATGCAGAAAA 59.655 37.500 0.00 0.00 0.00 2.29
3691 6092 5.012354 ACATTTGGAAGGTGATGCAGAAAAT 59.988 36.000 0.00 0.00 0.00 1.82
3692 6093 6.211184 ACATTTGGAAGGTGATGCAGAAAATA 59.789 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.398988 ACATCGGTGCAAATGTACATGATT 59.601 37.500 9.63 0.00 34.42 2.57
41 42 3.947196 ACATCGGTGCAAATGTACATGAT 59.053 39.130 9.63 3.01 34.42 2.45
42 43 3.342719 ACATCGGTGCAAATGTACATGA 58.657 40.909 9.63 0.45 34.42 3.07
43 44 3.763097 ACATCGGTGCAAATGTACATG 57.237 42.857 9.63 0.00 34.42 3.21
44 45 4.782019 AAACATCGGTGCAAATGTACAT 57.218 36.364 1.41 1.41 35.10 2.29
45 46 4.576216 AAAACATCGGTGCAAATGTACA 57.424 36.364 10.12 0.00 35.10 2.90
46 47 5.219633 AGAAAAACATCGGTGCAAATGTAC 58.780 37.500 10.12 0.00 35.10 2.90
47 48 5.009110 TGAGAAAAACATCGGTGCAAATGTA 59.991 36.000 10.12 0.00 35.10 2.29
48 49 4.202101 TGAGAAAAACATCGGTGCAAATGT 60.202 37.500 0.00 5.12 37.71 2.71
49 50 4.148696 GTGAGAAAAACATCGGTGCAAATG 59.851 41.667 0.00 0.00 0.00 2.32
61 62 4.381079 CCTTTTTCACGGGTGAGAAAAACA 60.381 41.667 15.51 0.00 44.32 2.83
97 133 0.970640 TAGTCGTGCCTAGGTTTGCA 59.029 50.000 11.31 0.00 34.54 4.08
168 204 6.500751 TCAAAGTTTCTCTACCTAATGGGACT 59.499 38.462 0.00 0.00 38.76 3.85
391 428 5.799213 TGGGGTAAACTTTTTGGCATTATG 58.201 37.500 0.00 0.00 0.00 1.90
425 584 2.159627 GGTGAGCACGACAACCTATTTG 59.840 50.000 0.00 0.00 41.49 2.32
549 708 4.201485 GCGTTTTTATTGACCGAATTGCTG 60.201 41.667 0.00 0.00 0.00 4.41
558 717 5.163784 GGAGACCTAAGCGTTTTTATTGACC 60.164 44.000 0.00 0.00 0.00 4.02
664 824 9.381033 CTAGATAGGAATAGCAATCCATTCTTG 57.619 37.037 5.41 4.42 39.55 3.02
665 825 9.331466 TCTAGATAGGAATAGCAATCCATTCTT 57.669 33.333 5.41 0.00 39.55 2.52
773 935 9.635404 ACAATACCTATAGGCTATAGAGATGTC 57.365 37.037 33.23 0.00 40.43 3.06
799 961 6.251255 TGGGAAATCAGATGACATGTATGA 57.749 37.500 0.00 1.48 0.00 2.15
825 1192 8.877864 TCCTTTGCTTGGATAGAATAAGAAAA 57.122 30.769 0.00 0.00 30.43 2.29
863 1257 2.225091 TGTCATGATGGGGCCCAATATC 60.225 50.000 32.57 23.36 36.95 1.63
884 1278 1.329171 TGTTTGCAGTTTGCTGGGCT 61.329 50.000 2.48 0.00 45.31 5.19
918 1329 1.589113 GTTCGCCTGTCTGCTCTCT 59.411 57.895 0.00 0.00 0.00 3.10
919 1330 1.803519 CGTTCGCCTGTCTGCTCTC 60.804 63.158 0.00 0.00 0.00 3.20
960 1371 2.202440 CGCCGTACACCTGTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
961 1372 2.181021 CCGCCGTACACCTGTCTC 59.819 66.667 0.00 0.00 0.00 3.36
962 1373 3.379445 CCCGCCGTACACCTGTCT 61.379 66.667 0.00 0.00 0.00 3.41
963 1374 3.352338 CTCCCGCCGTACACCTGTC 62.352 68.421 0.00 0.00 0.00 3.51
964 1375 3.379445 CTCCCGCCGTACACCTGT 61.379 66.667 0.00 0.00 0.00 4.00
965 1376 4.814294 GCTCCCGCCGTACACCTG 62.814 72.222 0.00 0.00 0.00 4.00
1008 1419 3.077556 GCCTCCTCCTTCGCTGGA 61.078 66.667 0.00 0.00 34.52 3.86
1036 1447 2.407210 GGCGAGCTCGTCTCTCTG 59.593 66.667 34.46 7.30 41.36 3.35
1174 1591 0.108138 CCTCGAGAAGGCCGTGATTT 60.108 55.000 15.71 0.00 38.67 2.17
1194 1611 1.758514 GACAGCTGAGATCGGGGGA 60.759 63.158 23.35 0.00 0.00 4.81
1199 1616 1.409227 GCACACGACAGCTGAGATCG 61.409 60.000 23.35 21.35 41.60 3.69
1222 1639 1.630148 ATCGCTCTTCTTTTCGTCCG 58.370 50.000 0.00 0.00 0.00 4.79
1400 2177 4.697756 CGAAGCCCCCGTGAGCAA 62.698 66.667 0.00 0.00 0.00 3.91
1452 2229 3.118884 TGCTATTACCAGTCCTTCGAACC 60.119 47.826 0.00 0.00 0.00 3.62
1469 2246 4.080695 TCAGTGATTGCTTTCCTCTGCTAT 60.081 41.667 0.00 0.00 0.00 2.97
1549 3780 2.609459 GTCCAGATAATGCAACGGACAG 59.391 50.000 12.10 0.00 42.04 3.51
1610 3841 7.833682 TCAAGCATAAATGAGAAATAACCTGGA 59.166 33.333 0.00 0.00 0.00 3.86
1668 3900 3.405831 TCTGAACACAGAGCCATTTCAG 58.594 45.455 3.70 3.70 42.99 3.02
1677 3909 4.999950 AGGCTACAAATTCTGAACACAGAG 59.000 41.667 0.00 0.00 40.93 3.35
1678 3910 4.973168 AGGCTACAAATTCTGAACACAGA 58.027 39.130 0.00 0.00 38.65 3.41
1709 3941 0.600255 AAAGAACCGAGCACAGACCG 60.600 55.000 0.00 0.00 0.00 4.79
1818 4054 5.047847 TGTTAGACGAAGCAATGCCTATAC 58.952 41.667 0.00 0.00 0.00 1.47
1836 4072 4.309933 TCAGCGATGCCTTATCATGTTAG 58.690 43.478 0.00 0.00 35.43 2.34
1990 4227 0.590682 CACGGCATAGCACAAACACA 59.409 50.000 0.00 0.00 0.00 3.72
2176 4414 6.375174 TCAATGAATCTACATGGTTTGGTGAG 59.625 38.462 0.00 0.00 0.00 3.51
2323 4561 2.354821 CCTGCCGATAAAGGTTAGCAAC 59.645 50.000 0.00 0.00 0.00 4.17
2331 4569 2.561569 CAGTAACCCTGCCGATAAAGG 58.438 52.381 0.00 0.00 33.59 3.11
2359 4597 7.643579 TGACGAATCACAAATGTTGATAACAA 58.356 30.769 0.00 0.00 45.86 2.83
2461 4699 1.734477 CTCCTCTGTCACGCGTTGG 60.734 63.158 10.22 0.00 0.00 3.77
2479 4717 3.863142 ACATCTCCGTGGTTACTGTAC 57.137 47.619 0.00 0.00 0.00 2.90
2489 4727 2.009108 CGGATGCAACATCTCCGTG 58.991 57.895 15.90 0.00 45.30 4.94
2569 4807 0.587285 GGTCTATCGCGTCGATCTGT 59.413 55.000 16.03 0.00 43.45 3.41
2642 4880 4.994217 GGACTTCACTTTCTTCTCCAAGAG 59.006 45.833 0.00 0.00 39.90 2.85
2644 4882 3.743396 CGGACTTCACTTTCTTCTCCAAG 59.257 47.826 0.00 0.00 0.00 3.61
2696 4934 5.237344 GTGATATACAACATGCTTGGGAGAC 59.763 44.000 4.44 3.26 0.00 3.36
2702 4940 4.464008 AGGGGTGATATACAACATGCTTG 58.536 43.478 0.00 0.00 38.06 4.01
2704 4942 5.547666 TGATAGGGGTGATATACAACATGCT 59.452 40.000 0.00 0.00 38.06 3.79
2706 4944 7.855375 AGATGATAGGGGTGATATACAACATG 58.145 38.462 0.00 0.00 38.06 3.21
2707 4945 8.454859 AAGATGATAGGGGTGATATACAACAT 57.545 34.615 0.00 0.00 38.06 2.71
2708 4946 7.734865 AGAAGATGATAGGGGTGATATACAACA 59.265 37.037 0.00 0.00 38.06 3.33
2709 4947 8.037758 CAGAAGATGATAGGGGTGATATACAAC 58.962 40.741 0.00 0.00 35.09 3.32
2710 4948 7.734865 ACAGAAGATGATAGGGGTGATATACAA 59.265 37.037 0.00 0.00 0.00 2.41
2711 4949 7.248976 ACAGAAGATGATAGGGGTGATATACA 58.751 38.462 0.00 0.00 0.00 2.29
2712 4950 7.726033 ACAGAAGATGATAGGGGTGATATAC 57.274 40.000 0.00 0.00 0.00 1.47
2714 4952 8.923838 AATACAGAAGATGATAGGGGTGATAT 57.076 34.615 0.00 0.00 0.00 1.63
2715 4953 8.180165 AGAATACAGAAGATGATAGGGGTGATA 58.820 37.037 0.00 0.00 0.00 2.15
2716 4954 7.021873 AGAATACAGAAGATGATAGGGGTGAT 58.978 38.462 0.00 0.00 0.00 3.06
2717 4955 6.385443 AGAATACAGAAGATGATAGGGGTGA 58.615 40.000 0.00 0.00 0.00 4.02
2718 4956 6.496565 AGAGAATACAGAAGATGATAGGGGTG 59.503 42.308 0.00 0.00 0.00 4.61
2719 4957 6.629156 AGAGAATACAGAAGATGATAGGGGT 58.371 40.000 0.00 0.00 0.00 4.95
2720 4958 7.671819 TGTAGAGAATACAGAAGATGATAGGGG 59.328 40.741 0.00 0.00 0.00 4.79
2721 4959 8.642935 TGTAGAGAATACAGAAGATGATAGGG 57.357 38.462 0.00 0.00 0.00 3.53
2771 5013 3.120041 GTTTCCCATCCAAACGTGTTTG 58.880 45.455 16.57 16.57 46.93 2.93
2792 5034 8.311836 TGGAAACATTAGGACTAGAGTGTTAAG 58.688 37.037 0.00 0.00 33.40 1.85
2793 5035 8.092687 GTGGAAACATTAGGACTAGAGTGTTAA 58.907 37.037 0.00 0.00 46.14 2.01
2795 5037 6.465084 GTGGAAACATTAGGACTAGAGTGTT 58.535 40.000 0.00 0.00 46.14 3.32
2803 5045 4.998051 ACAATGGTGGAAACATTAGGACT 58.002 39.130 0.00 0.00 46.14 3.85
2805 5047 5.144100 ACAACAATGGTGGAAACATTAGGA 58.856 37.500 2.39 0.00 46.14 2.94
2838 5080 0.798776 CGACTTGGCCATTCAGTGAC 59.201 55.000 13.34 0.00 0.00 3.67
2840 5082 0.518636 CACGACTTGGCCATTCAGTG 59.481 55.000 13.34 14.05 0.00 3.66
2852 5102 2.224209 CCTGGAAGTAACACCACGACTT 60.224 50.000 0.00 0.00 36.14 3.01
2856 5106 2.298163 AGTACCTGGAAGTAACACCACG 59.702 50.000 0.00 0.00 32.44 4.94
2858 5108 3.712733 ACAAGTACCTGGAAGTAACACCA 59.287 43.478 0.00 0.00 34.81 4.17
2865 5115 5.307196 ACTGTATCAACAAGTACCTGGAAGT 59.693 40.000 0.00 0.00 34.49 3.01
2874 5124 9.582431 GCAAAGATAGTACTGTATCAACAAGTA 57.418 33.333 5.39 0.00 34.49 2.24
2907 5281 0.798776 ACAATCTTACAGCGCTGTGC 59.201 50.000 44.69 4.76 44.63 4.57
2914 5288 2.789409 AGTGGGGACAATCTTACAGC 57.211 50.000 0.00 0.00 46.06 4.40
2915 5289 4.010349 GGAAAGTGGGGACAATCTTACAG 58.990 47.826 0.00 0.00 46.06 2.74
2927 5303 1.595093 GGCATGAACGGAAAGTGGGG 61.595 60.000 0.00 0.00 0.00 4.96
2942 5318 4.201657 TGATCTCATTCGTTTCATGGCAT 58.798 39.130 0.00 0.00 0.00 4.40
2945 5321 5.106791 GGCTATGATCTCATTCGTTTCATGG 60.107 44.000 0.00 0.00 37.76 3.66
2946 5322 5.389202 CGGCTATGATCTCATTCGTTTCATG 60.389 44.000 0.00 0.00 37.76 3.07
2952 5328 1.667177 CGCGGCTATGATCTCATTCGT 60.667 52.381 0.00 0.00 37.76 3.85
2964 5355 1.005630 GATGAAGCTCCGCGGCTAT 60.006 57.895 23.51 6.29 42.24 2.97
2968 5359 2.890109 GCATGATGAAGCTCCGCGG 61.890 63.158 22.12 22.12 0.00 6.46
2969 5360 2.102394 CTGCATGATGAAGCTCCGCG 62.102 60.000 0.00 0.00 0.00 6.46
2977 5368 4.081406 AGGTAAAACTGCTGCATGATGAA 58.919 39.130 1.31 0.00 0.00 2.57
2979 5370 3.441222 TGAGGTAAAACTGCTGCATGATG 59.559 43.478 1.31 0.00 0.00 3.07
2980 5371 3.689347 TGAGGTAAAACTGCTGCATGAT 58.311 40.909 1.31 0.00 0.00 2.45
2981 5372 3.138884 TGAGGTAAAACTGCTGCATGA 57.861 42.857 1.31 0.00 0.00 3.07
2982 5373 3.254166 ACTTGAGGTAAAACTGCTGCATG 59.746 43.478 1.31 0.00 0.00 4.06
2983 5374 3.490348 ACTTGAGGTAAAACTGCTGCAT 58.510 40.909 1.31 0.00 0.00 3.96
2984 5375 2.930950 ACTTGAGGTAAAACTGCTGCA 58.069 42.857 0.88 0.88 0.00 4.41
2985 5376 5.629079 AATACTTGAGGTAAAACTGCTGC 57.371 39.130 0.00 0.00 33.74 5.25
2986 5377 6.857964 CACAAATACTTGAGGTAAAACTGCTG 59.142 38.462 0.00 0.00 36.33 4.41
2987 5378 6.515035 GCACAAATACTTGAGGTAAAACTGCT 60.515 38.462 0.00 0.00 36.33 4.24
2988 5379 5.629435 GCACAAATACTTGAGGTAAAACTGC 59.371 40.000 0.00 0.00 36.33 4.40
2989 5380 6.734137 TGCACAAATACTTGAGGTAAAACTG 58.266 36.000 0.00 0.00 36.33 3.16
2990 5381 6.952773 TGCACAAATACTTGAGGTAAAACT 57.047 33.333 0.00 0.00 36.33 2.66
2995 5386 6.072175 GGTTCATTGCACAAATACTTGAGGTA 60.072 38.462 0.00 0.00 36.33 3.08
3000 5391 4.386652 GCAGGTTCATTGCACAAATACTTG 59.613 41.667 0.00 0.00 41.17 3.16
3003 5394 3.056607 AGGCAGGTTCATTGCACAAATAC 60.057 43.478 0.00 0.00 43.28 1.89
3008 5399 0.111061 AGAGGCAGGTTCATTGCACA 59.889 50.000 0.00 0.00 43.28 4.57
3009 5400 0.524862 CAGAGGCAGGTTCATTGCAC 59.475 55.000 0.00 0.00 43.28 4.57
3010 5401 1.246056 GCAGAGGCAGGTTCATTGCA 61.246 55.000 0.00 0.00 43.28 4.08
3011 5402 1.509923 GCAGAGGCAGGTTCATTGC 59.490 57.895 0.00 0.00 40.72 3.56
3012 5403 1.651240 CGGCAGAGGCAGGTTCATTG 61.651 60.000 0.00 0.00 43.71 2.82
3014 5405 2.270205 CGGCAGAGGCAGGTTCAT 59.730 61.111 0.00 0.00 43.71 2.57
3015 5406 3.241530 ACGGCAGAGGCAGGTTCA 61.242 61.111 0.00 0.00 43.71 3.18
3016 5407 2.743928 CACGGCAGAGGCAGGTTC 60.744 66.667 0.00 0.00 43.71 3.62
3027 5418 2.435410 CATCAGAGCTGCACGGCA 60.435 61.111 1.02 0.00 36.92 5.69
3028 5419 3.200593 CCATCAGAGCTGCACGGC 61.201 66.667 1.02 0.00 0.00 5.68
3029 5420 3.200593 GCCATCAGAGCTGCACGG 61.201 66.667 1.02 0.00 0.00 4.94
3030 5421 2.125229 AGCCATCAGAGCTGCACG 60.125 61.111 1.02 0.00 39.69 5.34
3036 5427 1.453762 GCCAATCCAGCCATCAGAGC 61.454 60.000 0.00 0.00 0.00 4.09
3051 5442 0.674581 CGTGCAGAGGAGAATGCCAA 60.675 55.000 0.00 0.00 41.85 4.52
3064 5455 5.591643 ATCTTTGTAACACTAACGTGCAG 57.408 39.130 0.00 0.00 45.10 4.41
3076 5470 4.351131 AATTCGCGGGAATCTTTGTAAC 57.649 40.909 25.67 0.00 41.99 2.50
3077 5471 5.048643 TGAAAATTCGCGGGAATCTTTGTAA 60.049 36.000 25.67 13.20 41.99 2.41
3090 5484 4.031652 GGTTCCATGAATTGAAAATTCGCG 59.968 41.667 0.00 0.00 0.00 5.87
3093 5487 7.260603 AGATCGGTTCCATGAATTGAAAATTC 58.739 34.615 0.00 5.89 0.00 2.17
3094 5488 7.174107 AGATCGGTTCCATGAATTGAAAATT 57.826 32.000 0.00 0.00 0.00 1.82
3105 5499 2.361119 TCCTTACGAGATCGGTTCCATG 59.639 50.000 7.22 0.00 44.95 3.66
3140 5534 2.234661 TCCTCTGTCACCACATGTCATC 59.765 50.000 0.00 0.00 0.00 2.92
3171 5565 3.149196 GACCAAGAAATTCAGTGGCAGA 58.851 45.455 13.55 0.00 34.27 4.26
3191 5588 3.060138 GTCGCATGTGAAAACGTTACAGA 60.060 43.478 11.25 4.43 0.00 3.41
3196 5593 2.540769 CCAAGTCGCATGTGAAAACGTT 60.541 45.455 11.25 0.00 0.00 3.99
3208 5605 1.033202 ATGCATGATGCCAAGTCGCA 61.033 50.000 15.70 0.00 44.23 5.10
3248 5646 2.926200 GTGTCAGTCAAGTCCATGATCG 59.074 50.000 0.00 0.00 0.00 3.69
3268 5666 6.976934 ATGAACCTGTGTAAGAAATTTGGT 57.023 33.333 0.00 0.00 0.00 3.67
3346 5747 2.194859 AGGACCGGAGAGTGAGTACTA 58.805 52.381 9.46 0.00 37.25 1.82
3347 5748 0.993470 AGGACCGGAGAGTGAGTACT 59.007 55.000 9.46 0.00 40.66 2.73
3348 5749 1.836802 AAGGACCGGAGAGTGAGTAC 58.163 55.000 9.46 0.00 0.00 2.73
3349 5750 2.599408 AAAGGACCGGAGAGTGAGTA 57.401 50.000 9.46 0.00 0.00 2.59
3350 5751 1.718280 AAAAGGACCGGAGAGTGAGT 58.282 50.000 9.46 0.00 0.00 3.41
3351 5752 2.841442 AAAAAGGACCGGAGAGTGAG 57.159 50.000 9.46 0.00 0.00 3.51
3352 5753 3.236896 ACTAAAAAGGACCGGAGAGTGA 58.763 45.455 9.46 0.00 0.00 3.41
3353 5754 3.258622 AGACTAAAAAGGACCGGAGAGTG 59.741 47.826 9.46 0.00 0.00 3.51
3354 5755 3.258622 CAGACTAAAAAGGACCGGAGAGT 59.741 47.826 9.46 0.00 0.00 3.24
3355 5756 3.851098 CAGACTAAAAAGGACCGGAGAG 58.149 50.000 9.46 0.00 0.00 3.20
3356 5757 2.028385 GCAGACTAAAAAGGACCGGAGA 60.028 50.000 9.46 0.00 0.00 3.71
3357 5758 2.289444 TGCAGACTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3358 5759 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3359 5760 1.804748 GTGCAGACTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
3360 5761 2.489971 TGTGCAGACTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
3361 5762 5.705905 ACTTATGTGCAGACTAAAAAGGACC 59.294 40.000 0.00 0.00 0.00 4.46
3362 5763 6.803154 ACTTATGTGCAGACTAAAAAGGAC 57.197 37.500 0.00 0.00 0.00 3.85
3363 5764 7.817418 AAACTTATGTGCAGACTAAAAAGGA 57.183 32.000 0.00 0.00 0.00 3.36
3364 5765 8.352942 AGAAAACTTATGTGCAGACTAAAAAGG 58.647 33.333 0.00 0.00 0.00 3.11
3365 5766 9.736023 AAGAAAACTTATGTGCAGACTAAAAAG 57.264 29.630 0.00 0.00 0.00 2.27
3366 5767 9.730420 GAAGAAAACTTATGTGCAGACTAAAAA 57.270 29.630 0.00 0.00 0.00 1.94
3367 5768 8.898761 TGAAGAAAACTTATGTGCAGACTAAAA 58.101 29.630 0.00 0.00 0.00 1.52
3368 5769 8.445275 TGAAGAAAACTTATGTGCAGACTAAA 57.555 30.769 0.00 0.00 0.00 1.85
3369 5770 8.445275 TTGAAGAAAACTTATGTGCAGACTAA 57.555 30.769 0.00 0.00 0.00 2.24
3370 5771 8.445275 TTTGAAGAAAACTTATGTGCAGACTA 57.555 30.769 0.00 0.00 0.00 2.59
3371 5772 6.942532 TTGAAGAAAACTTATGTGCAGACT 57.057 33.333 0.00 0.00 0.00 3.24
3372 5773 7.196331 ACTTTGAAGAAAACTTATGTGCAGAC 58.804 34.615 0.00 0.00 0.00 3.51
3373 5774 7.333528 ACTTTGAAGAAAACTTATGTGCAGA 57.666 32.000 0.00 0.00 0.00 4.26
3374 5775 7.992180 AACTTTGAAGAAAACTTATGTGCAG 57.008 32.000 0.00 0.00 0.00 4.41
3375 5776 9.862371 TTTAACTTTGAAGAAAACTTATGTGCA 57.138 25.926 0.00 0.00 0.00 4.57
3431 5832 8.981647 GCATTTTGAATGTTGATACTTGTTTCT 58.018 29.630 2.97 0.00 0.00 2.52
3432 5833 8.223100 GGCATTTTGAATGTTGATACTTGTTTC 58.777 33.333 2.97 0.00 0.00 2.78
3433 5834 7.714377 TGGCATTTTGAATGTTGATACTTGTTT 59.286 29.630 2.97 0.00 0.00 2.83
3434 5835 7.215789 TGGCATTTTGAATGTTGATACTTGTT 58.784 30.769 2.97 0.00 0.00 2.83
3435 5836 6.757237 TGGCATTTTGAATGTTGATACTTGT 58.243 32.000 2.97 0.00 0.00 3.16
3436 5837 7.655236 TTGGCATTTTGAATGTTGATACTTG 57.345 32.000 0.00 0.00 0.00 3.16
3437 5838 8.851541 ATTTGGCATTTTGAATGTTGATACTT 57.148 26.923 0.00 0.00 0.00 2.24
3438 5839 8.095792 TGATTTGGCATTTTGAATGTTGATACT 58.904 29.630 0.00 0.00 0.00 2.12
3439 5840 8.254178 TGATTTGGCATTTTGAATGTTGATAC 57.746 30.769 0.00 0.00 0.00 2.24
3440 5841 8.843885 TTGATTTGGCATTTTGAATGTTGATA 57.156 26.923 0.00 0.00 0.00 2.15
3441 5842 7.747155 TTGATTTGGCATTTTGAATGTTGAT 57.253 28.000 0.00 0.00 0.00 2.57
3442 5843 7.228906 ACATTGATTTGGCATTTTGAATGTTGA 59.771 29.630 0.00 0.00 30.53 3.18
3443 5844 7.364200 ACATTGATTTGGCATTTTGAATGTTG 58.636 30.769 0.00 0.00 30.53 3.33
3444 5845 7.513371 ACATTGATTTGGCATTTTGAATGTT 57.487 28.000 0.00 0.00 30.53 2.71
3445 5846 7.513371 AACATTGATTTGGCATTTTGAATGT 57.487 28.000 0.00 0.00 34.97 2.71
3446 5847 8.804688 AAAACATTGATTTGGCATTTTGAATG 57.195 26.923 0.00 0.00 0.00 2.67
3448 5849 9.894783 CATAAAACATTGATTTGGCATTTTGAA 57.105 25.926 2.46 0.00 0.00 2.69
3449 5850 9.281371 TCATAAAACATTGATTTGGCATTTTGA 57.719 25.926 2.46 0.00 0.00 2.69
3450 5851 9.894783 TTCATAAAACATTGATTTGGCATTTTG 57.105 25.926 2.46 0.00 0.00 2.44
3531 5932 5.350365 TGCTCGTGCGTATTCTAGAATTTTT 59.650 36.000 22.60 2.36 43.34 1.94
3532 5933 4.868171 TGCTCGTGCGTATTCTAGAATTTT 59.132 37.500 22.60 2.74 43.34 1.82
3533 5934 4.430007 TGCTCGTGCGTATTCTAGAATTT 58.570 39.130 22.60 3.50 43.34 1.82
3534 5935 4.041740 TGCTCGTGCGTATTCTAGAATT 57.958 40.909 22.60 7.80 43.34 2.17
3535 5936 3.710326 TGCTCGTGCGTATTCTAGAAT 57.290 42.857 21.28 21.28 43.34 2.40
3536 5937 3.372060 CATGCTCGTGCGTATTCTAGAA 58.628 45.455 7.82 7.82 43.34 2.10
3537 5938 2.858646 GCATGCTCGTGCGTATTCTAGA 60.859 50.000 11.37 0.00 43.34 2.43
3538 5939 1.453524 GCATGCTCGTGCGTATTCTAG 59.546 52.381 11.37 0.00 43.34 2.43
3539 5940 1.487482 GCATGCTCGTGCGTATTCTA 58.513 50.000 11.37 0.00 43.34 2.10
3540 5941 2.301505 GCATGCTCGTGCGTATTCT 58.698 52.632 11.37 0.00 43.34 2.40
3541 5942 4.880748 GCATGCTCGTGCGTATTC 57.119 55.556 11.37 0.00 43.34 1.75
3547 5948 0.315382 GTTGATACGCATGCTCGTGC 60.315 55.000 17.13 1.71 43.21 5.34
3548 5949 0.998669 TGTTGATACGCATGCTCGTG 59.001 50.000 17.13 2.03 43.21 4.35
3549 5950 1.939974 ATGTTGATACGCATGCTCGT 58.060 45.000 17.13 9.84 45.49 4.18
3550 5951 3.031126 CAAATGTTGATACGCATGCTCG 58.969 45.455 17.13 3.27 0.00 5.03
3551 5952 4.031028 GTCAAATGTTGATACGCATGCTC 58.969 43.478 17.13 7.33 42.47 4.26
3552 5953 3.691118 AGTCAAATGTTGATACGCATGCT 59.309 39.130 17.13 5.50 42.47 3.79
3553 5954 4.019919 AGTCAAATGTTGATACGCATGC 57.980 40.909 7.91 7.91 42.47 4.06
3554 5955 5.509272 GTCAAGTCAAATGTTGATACGCATG 59.491 40.000 0.00 0.00 42.47 4.06
3555 5956 5.181056 TGTCAAGTCAAATGTTGATACGCAT 59.819 36.000 0.00 0.00 42.47 4.73
3556 5957 4.513318 TGTCAAGTCAAATGTTGATACGCA 59.487 37.500 0.00 0.00 42.47 5.24
3557 5958 4.846137 GTGTCAAGTCAAATGTTGATACGC 59.154 41.667 0.00 0.00 42.47 4.42
3558 5959 5.984627 TGTGTCAAGTCAAATGTTGATACG 58.015 37.500 7.25 0.00 43.78 3.06
3559 5960 8.801715 ATTTGTGTCAAGTCAAATGTTGATAC 57.198 30.769 5.34 5.34 42.19 2.24
3560 5961 8.849168 AGATTTGTGTCAAGTCAAATGTTGATA 58.151 29.630 7.66 0.00 42.05 2.15
3561 5962 7.719483 AGATTTGTGTCAAGTCAAATGTTGAT 58.281 30.769 7.66 0.00 42.05 2.57
3562 5963 7.099266 AGATTTGTGTCAAGTCAAATGTTGA 57.901 32.000 7.66 0.00 42.05 3.18
3563 5964 8.854979 TTAGATTTGTGTCAAGTCAAATGTTG 57.145 30.769 7.66 0.00 42.05 3.33
3568 5969 8.279800 CGTGTATTAGATTTGTGTCAAGTCAAA 58.720 33.333 7.50 0.00 37.82 2.69
3569 5970 7.095397 CCGTGTATTAGATTTGTGTCAAGTCAA 60.095 37.037 7.50 2.05 0.00 3.18
3570 5971 6.367695 CCGTGTATTAGATTTGTGTCAAGTCA 59.632 38.462 7.50 0.00 0.00 3.41
3571 5972 6.367969 ACCGTGTATTAGATTTGTGTCAAGTC 59.632 38.462 0.00 0.00 0.00 3.01
3572 5973 6.147164 CACCGTGTATTAGATTTGTGTCAAGT 59.853 38.462 0.00 0.00 0.00 3.16
3573 5974 6.147164 ACACCGTGTATTAGATTTGTGTCAAG 59.853 38.462 1.18 0.00 30.44 3.02
3574 5975 5.992829 ACACCGTGTATTAGATTTGTGTCAA 59.007 36.000 1.18 0.00 30.44 3.18
3575 5976 5.407084 CACACCGTGTATTAGATTTGTGTCA 59.593 40.000 3.25 0.00 33.76 3.58
3576 5977 5.636121 TCACACCGTGTATTAGATTTGTGTC 59.364 40.000 3.25 0.00 35.64 3.67
3577 5978 5.543714 TCACACCGTGTATTAGATTTGTGT 58.456 37.500 3.25 0.00 35.64 3.72
3578 5979 6.474819 TTCACACCGTGTATTAGATTTGTG 57.525 37.500 3.25 0.00 34.79 3.33
3579 5980 7.308348 CCTTTTCACACCGTGTATTAGATTTGT 60.308 37.037 3.25 0.00 34.79 2.83
3580 5981 7.021196 CCTTTTCACACCGTGTATTAGATTTG 58.979 38.462 3.25 0.00 34.79 2.32
3581 5982 6.938030 TCCTTTTCACACCGTGTATTAGATTT 59.062 34.615 3.25 0.00 34.79 2.17
3582 5983 6.370718 GTCCTTTTCACACCGTGTATTAGATT 59.629 38.462 3.25 0.00 34.79 2.40
3583 5984 5.873164 GTCCTTTTCACACCGTGTATTAGAT 59.127 40.000 3.25 0.00 34.79 1.98
3584 5985 5.232463 GTCCTTTTCACACCGTGTATTAGA 58.768 41.667 3.25 0.00 34.79 2.10
3585 5986 4.390909 GGTCCTTTTCACACCGTGTATTAG 59.609 45.833 3.25 0.22 34.79 1.73
3586 5987 4.202336 TGGTCCTTTTCACACCGTGTATTA 60.202 41.667 3.25 0.00 34.79 0.98
3587 5988 3.143728 GGTCCTTTTCACACCGTGTATT 58.856 45.455 3.25 0.00 34.79 1.89
3588 5989 2.105134 TGGTCCTTTTCACACCGTGTAT 59.895 45.455 3.25 0.00 34.79 2.29
3589 5990 1.485480 TGGTCCTTTTCACACCGTGTA 59.515 47.619 3.25 0.00 34.79 2.90
3590 5991 0.253610 TGGTCCTTTTCACACCGTGT 59.746 50.000 0.00 0.00 34.79 4.49
3591 5992 0.944386 CTGGTCCTTTTCACACCGTG 59.056 55.000 0.00 0.00 32.27 4.94
3592 5993 0.834612 TCTGGTCCTTTTCACACCGT 59.165 50.000 0.00 0.00 32.27 4.83
3593 5994 1.512926 CTCTGGTCCTTTTCACACCG 58.487 55.000 0.00 0.00 32.27 4.94
3594 5995 1.545651 CCCTCTGGTCCTTTTCACACC 60.546 57.143 0.00 0.00 0.00 4.16
3595 5996 1.420138 TCCCTCTGGTCCTTTTCACAC 59.580 52.381 0.00 0.00 0.00 3.82
3596 5997 1.699634 CTCCCTCTGGTCCTTTTCACA 59.300 52.381 0.00 0.00 0.00 3.58
3597 5998 1.700186 ACTCCCTCTGGTCCTTTTCAC 59.300 52.381 0.00 0.00 0.00 3.18
3598 5999 2.118403 ACTCCCTCTGGTCCTTTTCA 57.882 50.000 0.00 0.00 0.00 2.69
3599 6000 3.174779 AGTACTCCCTCTGGTCCTTTTC 58.825 50.000 0.00 0.00 0.00 2.29
3600 6001 3.277416 AGTACTCCCTCTGGTCCTTTT 57.723 47.619 0.00 0.00 0.00 2.27
3601 6002 4.628661 ATAGTACTCCCTCTGGTCCTTT 57.371 45.455 0.00 0.00 0.00 3.11
3602 6003 5.136392 ACATATAGTACTCCCTCTGGTCCTT 59.864 44.000 0.00 0.00 0.00 3.36
3603 6004 4.670727 ACATATAGTACTCCCTCTGGTCCT 59.329 45.833 0.00 0.00 0.00 3.85
3604 6005 5.000570 ACATATAGTACTCCCTCTGGTCC 57.999 47.826 0.00 0.00 0.00 4.46
3605 6006 5.708230 CAGACATATAGTACTCCCTCTGGTC 59.292 48.000 0.00 0.00 0.00 4.02
3606 6007 5.134679 ACAGACATATAGTACTCCCTCTGGT 59.865 44.000 0.00 0.00 0.00 4.00
3607 6008 5.636123 ACAGACATATAGTACTCCCTCTGG 58.364 45.833 0.00 0.00 0.00 3.86
3608 6009 7.681679 TCTACAGACATATAGTACTCCCTCTG 58.318 42.308 0.00 6.54 0.00 3.35
3609 6010 7.875338 TCTACAGACATATAGTACTCCCTCT 57.125 40.000 0.00 0.00 0.00 3.69
3610 6011 7.066525 GCATCTACAGACATATAGTACTCCCTC 59.933 44.444 0.00 0.00 0.00 4.30
3611 6012 6.887545 GCATCTACAGACATATAGTACTCCCT 59.112 42.308 0.00 0.00 0.00 4.20
3612 6013 6.659668 TGCATCTACAGACATATAGTACTCCC 59.340 42.308 0.00 0.00 0.00 4.30
3613 6014 7.627513 GCTGCATCTACAGACATATAGTACTCC 60.628 44.444 0.00 0.00 40.25 3.85
3614 6015 7.120579 AGCTGCATCTACAGACATATAGTACTC 59.879 40.741 0.00 0.00 40.25 2.59
3615 6016 6.945435 AGCTGCATCTACAGACATATAGTACT 59.055 38.462 1.02 0.00 40.25 2.73
3616 6017 7.151999 AGCTGCATCTACAGACATATAGTAC 57.848 40.000 1.02 0.00 40.25 2.73
3617 6018 7.767250 AAGCTGCATCTACAGACATATAGTA 57.233 36.000 1.02 0.00 40.25 1.82
3618 6019 6.662865 AAGCTGCATCTACAGACATATAGT 57.337 37.500 1.02 0.00 40.25 2.12
3619 6020 7.150640 TCAAAGCTGCATCTACAGACATATAG 58.849 38.462 1.02 0.00 40.25 1.31
3620 6021 7.054491 TCAAAGCTGCATCTACAGACATATA 57.946 36.000 1.02 0.00 40.25 0.86
3621 6022 5.922053 TCAAAGCTGCATCTACAGACATAT 58.078 37.500 1.02 0.00 40.25 1.78
3622 6023 5.343307 TCAAAGCTGCATCTACAGACATA 57.657 39.130 1.02 0.00 40.25 2.29
3623 6024 4.212143 TCAAAGCTGCATCTACAGACAT 57.788 40.909 1.02 0.00 40.25 3.06
3624 6025 3.683365 TCAAAGCTGCATCTACAGACA 57.317 42.857 1.02 0.00 40.25 3.41
3625 6026 6.668541 TTATTCAAAGCTGCATCTACAGAC 57.331 37.500 1.02 0.00 40.25 3.51
3626 6027 7.105588 TCTTTATTCAAAGCTGCATCTACAGA 58.894 34.615 1.02 0.00 40.89 3.41
3627 6028 7.312657 TCTTTATTCAAAGCTGCATCTACAG 57.687 36.000 1.02 0.00 40.89 2.74
3628 6029 6.183360 GCTCTTTATTCAAAGCTGCATCTACA 60.183 38.462 1.02 0.00 40.89 2.74
3629 6030 6.038050 AGCTCTTTATTCAAAGCTGCATCTAC 59.962 38.462 1.02 0.00 40.89 2.59
3630 6031 6.118170 AGCTCTTTATTCAAAGCTGCATCTA 58.882 36.000 1.02 0.00 40.89 1.98
3631 6032 4.948621 AGCTCTTTATTCAAAGCTGCATCT 59.051 37.500 1.02 0.00 40.89 2.90
3632 6033 5.246145 AGCTCTTTATTCAAAGCTGCATC 57.754 39.130 1.02 0.00 40.89 3.91
3633 6034 5.184479 TGAAGCTCTTTATTCAAAGCTGCAT 59.816 36.000 1.02 0.00 40.89 3.96
3634 6035 4.520111 TGAAGCTCTTTATTCAAAGCTGCA 59.480 37.500 1.02 0.00 40.89 4.41
3635 6036 5.051891 TGAAGCTCTTTATTCAAAGCTGC 57.948 39.130 0.00 0.00 40.89 5.25
3636 6037 6.530534 CCAATGAAGCTCTTTATTCAAAGCTG 59.469 38.462 0.00 0.00 40.89 4.24
3637 6038 6.435277 TCCAATGAAGCTCTTTATTCAAAGCT 59.565 34.615 0.00 0.00 40.89 3.74
3638 6039 6.624423 TCCAATGAAGCTCTTTATTCAAAGC 58.376 36.000 0.00 0.00 40.89 3.51
3647 6048 9.211485 CAAATGTTTTATCCAATGAAGCTCTTT 57.789 29.630 0.00 0.00 0.00 2.52
3648 6049 7.820872 CCAAATGTTTTATCCAATGAAGCTCTT 59.179 33.333 0.00 0.00 0.00 2.85
3649 6050 7.178983 TCCAAATGTTTTATCCAATGAAGCTCT 59.821 33.333 0.00 0.00 0.00 4.09
3650 6051 7.322664 TCCAAATGTTTTATCCAATGAAGCTC 58.677 34.615 0.00 0.00 0.00 4.09
3651 6052 7.243604 TCCAAATGTTTTATCCAATGAAGCT 57.756 32.000 0.00 0.00 0.00 3.74
3652 6053 7.064966 CCTTCCAAATGTTTTATCCAATGAAGC 59.935 37.037 0.00 0.00 0.00 3.86
3653 6054 8.096414 ACCTTCCAAATGTTTTATCCAATGAAG 58.904 33.333 0.00 0.00 0.00 3.02
3654 6055 7.877097 CACCTTCCAAATGTTTTATCCAATGAA 59.123 33.333 0.00 0.00 0.00 2.57
3655 6056 7.234371 TCACCTTCCAAATGTTTTATCCAATGA 59.766 33.333 0.00 0.00 0.00 2.57
3656 6057 7.385267 TCACCTTCCAAATGTTTTATCCAATG 58.615 34.615 0.00 0.00 0.00 2.82
3657 6058 7.552050 TCACCTTCCAAATGTTTTATCCAAT 57.448 32.000 0.00 0.00 0.00 3.16
3658 6059 6.985653 TCACCTTCCAAATGTTTTATCCAA 57.014 33.333 0.00 0.00 0.00 3.53
3659 6060 6.574073 GCATCACCTTCCAAATGTTTTATCCA 60.574 38.462 0.00 0.00 0.00 3.41
3660 6061 5.812127 GCATCACCTTCCAAATGTTTTATCC 59.188 40.000 0.00 0.00 0.00 2.59
3661 6062 6.397272 TGCATCACCTTCCAAATGTTTTATC 58.603 36.000 0.00 0.00 0.00 1.75
3662 6063 6.211184 TCTGCATCACCTTCCAAATGTTTTAT 59.789 34.615 0.00 0.00 0.00 1.40
3663 6064 5.538053 TCTGCATCACCTTCCAAATGTTTTA 59.462 36.000 0.00 0.00 0.00 1.52
3664 6065 4.344679 TCTGCATCACCTTCCAAATGTTTT 59.655 37.500 0.00 0.00 0.00 2.43
3665 6066 3.896888 TCTGCATCACCTTCCAAATGTTT 59.103 39.130 0.00 0.00 0.00 2.83
3666 6067 3.499338 TCTGCATCACCTTCCAAATGTT 58.501 40.909 0.00 0.00 0.00 2.71
3667 6068 3.159213 TCTGCATCACCTTCCAAATGT 57.841 42.857 0.00 0.00 0.00 2.71
3668 6069 4.524316 TTTCTGCATCACCTTCCAAATG 57.476 40.909 0.00 0.00 0.00 2.32
3669 6070 5.750352 ATTTTCTGCATCACCTTCCAAAT 57.250 34.783 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.